<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:54:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539812" ref_strand="+" ref_description="SGN-E539812 [TUS-59-M7](-)">
      <seq>tagaaggactgaaccagctaaaaactggtaacttaatttcactatctgaacaacaacttctagattgtgagtccagaaacaacaatggttgtggaggcggcgtcaggaacgaagcatttctatacatagccgaaaacggagggctcacaacagaatcaaattacccgtacactggaattcctggaagttgtaatagcaaaatggcggaatcaactgcagtaacaatttcgagctacaaaacagtggatccaagtgaatcagcattgttacaggcagtactaattcagccagtttctgcaggtgtaaatattgggagcgacaaatttcgattttacaaaggtggaattttcagcggggaatgtggggagagttcacatcatgcagttacagtggtagggtatgggacaagtgaggatggtagtagtaattattggttggtgaagaattcatggggagaaaattggggtgaaagtggatatatgagaatggctagagatgttgtggatggtggagtttgtggccttgctactcgagcttcttttcctactgcttagtgttagacagaggattttacaactctgttttatggtacttcttttagttatgtaccatcgtattatcttattcttcaatctttattattacgtaccatctcatttgataaggtttgtttatacgtcatctttctcaaattctacctatgagattacactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="4026" stop="2710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3726" g_stop="3011" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E539812" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3726" e_stop="3011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGGACTGAACCAGCTAAAAACTGGTAACTTAATTTCACTATCTGAACAACAACTTCTAGATTGTGAGTCCAGAAACAACAATGGTTGTGGAGGCGGCGTCAGGAACGAAGCATTTCTATACATAGCCGAAAACGGAGGGCTCACAACAGAATCAAATTACCCGTACACTGGAATTCCTGGAAGTTGTAATAGCAAAATGGCGGAATCAACTGCAGTAACAATTTCGAGCTACAAAACAGTGGATCCAAGTGAATCAGCATTGTTACAGGCAGTACTAATTCAGCCAGTTTCTGCAGGTGTAAATATTGGGAGCGACAAATTTCGATTTTACAAAGGTGGAATTTTCAGCGGGGAATGTGGGGAGAGTTCACATCATGCAGTTACAGTGGTAGGGTATGGGACAAGTGAGGATGGTAGTAGTAATTATTGGTTGGTGAAGAATTCATGGGGAGAAAATTGGGGTGAAAGTGGATATATGAGAATGGCTAGAGATGTTGTGGATGGTGGAGTTTGTGGCCTTGCTACTCGAGCTTCTTTTCCTACTGCTTAGTGTTAGACAGAGGATTTTACAACTCTGTTTTATGGTACTTCTTTTAGTTATGTACCATCGTATTATCTTATTCTTCAATCTTTATTATTACGTACCATCTCATTTGATAAGGTTTGTTTATACGTCATCTTTCTCAAATTCTACCTATGAGATTACACTCAG</genome_strand>
        <mrna_strand>TAGAAGGACTGAACCAGCTAAAAACTGGTAACTTAATTTCACTATCTGAACAACAACTTCTAGATTGTGAGTCCAGAAACAACAATGGTTGTGGAGGCGGCGTCAGGAACGAAGCATTTCTATACATAGCCGAAAACGGAGGGCTCACAACAGAATCAAATTACCCGTACACTGGAATTCCTGGAAGTTGTAATAGCAAAATGGCGGAATCAACTGCAGTAACAATTTCGAGCTACAAAACAGTGGATCCAAGTGAATCAGCATTGTTACAGGCAGTACTAATTCAGCCAGTTTCTGCAGGTGTAAATATTGGGAGCGACAAATTTCGATTTTACAAAGGTGGAATTTTCAGCGGGGAATGTGGGGAGAGTTCACATCATGCAGTTACAGTGGTAGGGTATGGGACAAGTGAGGATGGTAGTAGTAATTATTGGTTGGTGAAGAATTCATGGGGAGAAAATTGGGGTGAAAGTGGATATATGAGAATGGCTAGAGATGTTGTGGATGGTGGAGTTTGTGGCCTTGCTACTCGAGCTTCTTTTCCTACTGCTTAGTGTTAGACAGAGGATTTTACAACTCTGTTTTATGGTACTTCTTTTAGTTATGTACCATCGTATTATCTTATTCTTCAATCTTTATTATTACGTACCATCTCATTTGATAAGGTTTGTTTATACGTCATCTTTCTCAAATTCTACCTATGAGATTACACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539814" ref_strand="+" ref_description="SGN-E539814 [TUS-59-M7]">
      <seq>ttttattttcacataacaaatatagtttcagattttcacgatggcattgaaattttgcaggttaagcctcgtagcacttttactagtggtcgcaactctcagcttccgagccactagtgctcgtgacttgcaagtgtattccatgctcgaaaggcacgaaaaatggatgagtcaccatgggcgcgtatacaaagatgatgttgaaaaggcagagcgattgaagatatttaaagaaaatgttgaatttatcgaggcattcaacaatgatgctgctcattcttaccagcttggcgtcaataaatttgcagatctaacgaatgaagagtttcaatctatggttggtagatataatctatctttccttccaaagacatcgaatttgcaatcatttagttaccaaagtgaaaattccagtcctgatagttggaactggagagaacagggtgctgttactcctgttaaggaccagggtaaatgtggtaagtcccaaatcaaagttcattctcctattcacaatttatatgaccgtatttgattaggccgggattttaatttaaaactcaataaattaaaaagactagaattttgaatctataatctgactatagcaggttagactaaatttcccttgcaaacgtaggtagtaccacaaactaacatactgtaaattgataaactactagtagctactataaaatgcagggtcatgnttgggcattttcagcggtagcagcagtagaaggactgaaccagctaaaaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="4761" stop="3398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4461" g_stop="3698" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E539814" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4461" e_stop="3698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCACATAACAAATATAGTTTCAGATTTTCACGATGGCATTGAAATTTTGCAGGTTAAGCCTCGTAGCACTTTTACTAGTGGTCGCAACTCTCAGCTTCCGAGCCACTAGTGCTCGTGACTTGCAAGTGTATTCCATGCTCGAAAGGCACGAAAAATGGATGAGTCACCATGGGCGCGTATACAAAGATGATGTTGAAAAGGCAGAGCGATTGAAGATATTTAAAGAAAATGTTGAATTTATCGAGGCATTCAACAATGATGCTGCTCATTCTTACCAGCTTGGCGTCAATAAATTTGCAGATCTAACGAATGAAGAGTTTCAATCTATGGTTGGTAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACAGGGTGCTGTTACTCCTGTTAAGGACCAGGGTAAATGTGGTAAGTCCCAAATCAAAGTTCATTCTCCTATTCACAATTTATATGACCGTATTTGATTAGGCCGGGATTTTAATTTAAAACTCAATAAATTAAAAAGACTAGAATTTTGAATCTATAATCTGACTATAGCAGGTTAGACTAAATTTCCCTTGCAAACGTAGGTAGTACCACAAACTAACATACTGTAAATTGATAAACTACTAGTAGCTACTATAAAATGCAGGGTCATG-TTGGGCATTTTCAGCGGTAGCAGCAGTAGAAGGACTGAACCAGCTAAAAACTGGT</genome_strand>
        <mrna_strand>TTTTATTTTCACATAACAAATATAGTTTCAGATTTTCACGATGGCATTGAAATTTTGCAGGTTAAGCCTCGTAGCACTTTTACTAGTGGTCGCAACTCTCAGCTTCCGAGCCACTAGTGCTCGTGACTTGCAAGTGTATTCCATGCTCGAAAGGCACGAAAAATGGATGAGTCACCATGGGCGCGTATACAAAGATGATGTTGAAAAGGCAGAGCGATTGAAGATATTTAAAGAAAATGTTGAATTTATCGAGGCATTCAACAATGATGCTGCTCATTCTTACCAGCTTGGCGTCAATAAATTTGCAGATCTAACGAATGAAGAGTTTCAATCTATGGTTGGTAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACAGGGTGCTGTTACTCCTGTTAAGGACCAGGGTAAATGTGGTAAGTCCCAAATCAAAGTTCATTCTCCTATTCACAATTTATATGACCGTATTTGATTAGGCCGGGATTTTAATTTAAAACTCAATAAATTAAAAAGACTAGAATTTTGAATCTATAATCTGACTATAGCAGGTTAGACTAAATTTCCCTTGCAAACGTAGGTAGTACCACAAACTAACATACTGTAAATTGATAAACTACTAGTAGCTACTATAAAATGCAGGGTCATGNTTGGGCATTTTCAGCGGTAGCAGCAGTAGAAGGACTGAACCAGCTAAAAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312960" ref_strand="+" ref_description="SGN-E312960 [cTOA-14-B5]">
      <seq>aagagtttcaatctatggttgggagatataatctatctttccttccaaagacatcgaatttgcaatcatttagttaccaaagtgaaaattccagtcctgatagttggaactggagagaacagggtgctgttactcctgttaaggaccagggtaaatgtggtaagtcccaaatcaaagttcattctcctattcacaatttatatgaccgtatttgattaggccgggattttaatttaaaactcaataaattaaaaagactagaattttgaatctataatctgactatagcaggttagactaaatttcccttgcaaacgtaggtagtaccacaaactaacatactgtaaattgataaactactagtagctactataaaatgcagggtcatgttgggcattttcagcggtagcagcagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="4441" stop="3424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4141" g_stop="3724" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E312960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4141" e_stop="3724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTTCAATCTATGGTTGGTAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACAGGGTGCTGTTACTCCTGTTAAGGACCAGGGTAAATGTGGTAAGTCCCAAATCAAAGTTCATTCTCCTATTCACAATTTATATGACCGTATTTGATTAGGCCGGGATTTTAATTTAAAACTCAATAAATTAAAAAGACTAGAATTTTGAATCTATAATCTGACTATAGCAGGTTAGACTAAATTTCCCTTGCAAACGTAGGTAGTACCACAAACTAACATACTGTAAATTGATAAACTACTAGTAGCTACTATAAAATGCAGGGTCATGTTGGGCATTTTCAGCGGTAGCAGCAGTAG</genome_strand>
        <mrna_strand>AAGAGTTTCAATCTATGGTTGGGAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACAGGGTGCTGTTACTCCTGTTAAGGACCAGGGTAAATGTGGTAAGTCCCAAATCAAAGTTCATTCTCCTATTCACAATTTATATGACCGTATTTGATTAGGCCGGGATTTTAATTTAAAACTCAATAAATTAAAAAGACTAGAATTTTGAATCTATAATCTGACTATAGCAGGTTAGACTAAATTTCCCTTGCAAACGTAGGTAGTACCACAAACTAACATACTGTAAATTGATAAACTACTAGTAGCTACTATAAAATGCAGGGTCATGTTGGGCATTTTCAGCGGTAGCAGCAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284552" ref_strand="+" ref_description="SGN-E284552 [cLES-3-N3]">
      <seq>tttattttcacataacaaatatagtttcagattttcacgatggcattgaaattttgcaggttaagcctcgtagcacttttactagtggtcgcaactctcagcttccgagccactagtgctcgtgacttgcaagtgtattccatgctcgaaaggcacgaaaaatggatgagtcaccatgggcgcgtatacaaagatgatgttgaaaaggcagagcgattgaagatatttaaagaaaatgttgaatttatcgaggcattcaacaatgatgctgctcattcttaccagcttggcgtcaataaatttgcagatctaacgaatgaagagtttcaatctatggttggtagatataatctatctttccttccaaagacatcgaatttgcaatcatttagttaccaaagtgaaaattccagtcctgatagttggaactggagagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="4760" stop="3721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4460" g_stop="4021" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E284552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4460" e_stop="4021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTCACATAACAAATATAGTTTCAGATTTTCACGATGGCATTGAAATTTTGCAGGTTAAGCCTCGTAGCACTTTTACTAGTGGTCGCAACTCTCAGCTTCCGAGCCACTAGTGCTCGTGACTTGCAAGTGTATTCCATGCTCGAAAGGCACGAAAAATGGATGAGTCACCATGGGCGCGTATACAAAGATGATGTTGAAAAGGCAGAGCGATTGAAGATATTTAAAGAAAATGTTGAATTTATCGAGGCATTCAACAATGATGCTGCTCATTCTTACCAGCTTGGCGTCAATAAATTTGCAGATCTAACGAATGAAGAGTTTCAATCTATGGTTGGTAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACA</genome_strand>
        <mrna_strand>TTTATTTTCACATAACAAATATAGTTTCAGATTTTCACGATGGCATTGAAATTTTGCAGGTTAAGCCTCGTAGCACTTTTACTAGTGGTCGCAACTCTCAGCTTCCGAGCCACTAGTGCTCGTGACTTGCAAGTGTATTCCATGCTCGAAAGGCACGAAAAATGGATGAGTCACCATGGGCGCGTATACAAAGATGATGTTGAAAAGGCAGAGCGATTGAAGATATTTAAAGAAAATGTTGAATTTATCGAGGCATTCAACAATGATGCTGCTCATTCTTACCAGCTTGGCGTCAATAAATTTGCAGATCTAACGAATGAAGAGTTTCAATCTATGGTTGGTAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351474" ref_strand="+" ref_description="SGN-E351474 [cTOS-12-P14]">
      <seq>ttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgttggtattgcggctaacgatgagtttcatatgtacggaagtggaatatatgatggaagttgtaattctagactgaatcatgcagtgacagttataggttatgggacaagtgaagaagatggtacaaaatattggatagtgaagaattcatgggggagtgattggggtgaggaaggatatatgagaattgctagagatgttggagttgatggtggccattgtggcattgcaaaggttgcttcgttccctactgtttgaatttatattacaaaaaaataggcattgctattaatattatgtagaagagttgccaatgctatagcttgtaattcgtgtttcaacaataaattaatcaatatatgaatgagaagtatttttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="9050" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8750" g_stop="8195" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E351474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8750" e_stop="8195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTAGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCTTCGTTCCCTACTGTTTGAATTTATATTACAAAAAAATAGGCATTGCTATTAATATTATGTAGAAGAGTTGCCAATGCTATAGCTTGTAATTCGTGTTTCAACAATAAATTAATCAATATATGAATGAGAAGTATTTTTCTTTTTT</genome_strand>
        <mrna_strand>TTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTAGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCTTCGTTCCCTACTGTTTGAATTTATATTACAAAAAAATAGGCATTGCTATTAATATTATGTAGAAGAGTTGCCAATGCTATAGCTTGTAATTCGTGTTTCAACAATAAATTAATCAATATATGAATGAGAAGTATTTTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715342" ref_strand="+" ref_description="SGN-E715342 [FB14AA09]">
      <seq>ctgcggccgcggctatagaaggagcatatcaaattgcaaacaacgaactaatctctctttcagagcaacaactattggattgctctacgcagaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgttggtattgcggctaacgatgagtttcatatgtacggaagtggaatatatgatggaagttgtaattctagactgaatcatgcagtgacagttataggttatgggacaagtgaagaagatggtacaaaatattggatagtgaagaattcatgggggagtgattggggtgaggaaggatatatgagaattgctagagatgttggagttgatggtggccattgtggcattgcaaaggttgcttcgttccctactgtttgaatttatattacaaaaaaataggcattgctattaatattatgtagaagagttgccaatgctatagcttgtaattcgtgtttcaacaataaattaatcaatatatgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="9187" stop="7910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8887" g_stop="8217" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="691"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E715342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8887" e_stop="8217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTAGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCTTCGTTCCCTACTGTTTGAATTTATATTACAAAAAAATAGGCATTGCTATTAATATTATGTAGAAGAGTTGCCAATGCTATAGCTTGTAATTCGTGTTTCAACAATAAATTAATCAATATATGA</genome_strand>
        <mrna_strand>CTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTAGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCTTCGTTCCCTACTGTTTGAATTTATATTACAAAAAAATAGGCATTGCTATTAATATTATGTAGAAGAGTTGCCAATGCTATAGCTTGTAATTCGTGTTTCAACAATAAATTAATCAATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283739" ref_strand="+" ref_description="SGN-E283739 [cLES-1-I3]">
      <seq>agaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgttggtattgcggctaacgatgagtttcatatgtacggaagtggaatatatgatggaagttgtaattctagactgaatcatgcagtgacagttataggttatgggacaagtgaagaagatggtacaaaatattggatagtgaagaattcatgggggagtgattggggtgaggaaggatatatgagaattgctcgagatgttggagttgatggtggccattgtggcattgcaaaggttgcgtcgttccctactgcttgaatttatattacaaaaaaacaggcattgctattaatattatgtagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="8997" stop="7974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8697" g_stop="8274" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E283739" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8697" e_stop="8274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTAGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCTTCGTTCCCTACTGTTTGAATTTATATTACAAAAAAATAGGCATTGCTATTAATATTATGTAGAAGA</genome_strand>
        <mrna_strand>AGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTCGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCGTCGTTCCCTACTGCTTGAATTTATATTACAAAAAAACAGGCATTGCTATTAATATTATGTAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286614" ref_strand="+" ref_description="SGN-E286614 [cLES-12-K10]">
      <seq>aaattgcaaacaacgaactaatctctctttcagagcaacaactattggattgctctacgcagaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgttggtattgcggctaacgatgagtttcatatgtacggaagtggaatatatgatggaagttgtaattctagactgaatcatgcagtgacagttataggttatgggacaagtgaagaagatggtacaaaatattggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="9157" stop="8142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8857" g_stop="8442" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E286614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8857" e_stop="8442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATA</genome_strand>
        <mrna_strand>AAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698881" ref_strand="+" ref_description="SGN-E698881 [FA07DE09]">
      <seq>aaacgttgagttcatcgaatctttcaacaagaacggaactcaacgttataagctagccatcaataaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctgcggccgcggctatagaaggagcatatcaaattgcaaacaacgaactaatctctctttcagagcaacaactattggattgctctacgcagaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgttggtattgcggctaacgatgagtttcatatgtacggaagtggaatatatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="9835" stop="8224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9535" g_stop="9282" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8524" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="636" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E698881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9535" e_stop="9282"/>
          <exon e_start="8905" e_stop="8524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGG</genome_strand>
        <mrna_strand>AAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282159" ref_strand="+" ref_description="SGN-E282159 [cLES-4-M16]">
      <seq>aaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctgcggccgcggctatagaaggagcatatcaaattgcaaacaacgaactaatctctctttcagagcaacaactattggattgctctacgcagaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgttggtattgcggctaacgatgagtttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="9771" stop="8249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9471" g_stop="9282" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8549" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="547" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E282159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9471" e_stop="9282"/>
          <exon e_start="8905" e_stop="8549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATA</genome_strand>
        <mrna_strand>AAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720834" ref_strand="+" ref_description="SGN-E720834 [FC12AA02]">
      <seq>cggccgaattgagcctctcttttagtcctttaaaagttcctattttgatatttcattaccatttaccaccaatggcttccaattttttcctcaagaatattactgttgttcttcttcttttttccattcttagcctatatccctttatagtaacttcccgcaacttaaaagaattatccatgcttgaaaggcatgaaaattggatggttcatcatggacgtgtatacaaagatgatatagaaaaagaacaccgcttcaaaacattcaaggaaaacgttgagttcatcgaatctttcaacaagaacggaactcaacgttataagctagccatcaataaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctgcggccgcggctatagaaggagcatatcaaattgcaaacaacgaactaatctctctttcaaagcaacaactattggattgctctacgcaaaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcaaaacaatggcggggtcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatggctacgaagtcgtaccatctgacgagtcatcgttgttgaaagctgtagtgaatcaacctatttctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="10072" stop="8277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9794" g_stop="9282" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="525" r_length="512" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8577" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="854" r_length="329" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E720834" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9794" e_stop="9282"/>
          <exon e_start="8905" e_stop="8577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTTTAGTTTTTAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTT</genome_strand>
        <mrna_strand>CCTCTCTTTTAGTCCTTTA-AAAGTTCCTATTTTGATATTTCATTACCATTTACCACCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAAAGCAACAACTATTGGATTGCTCTACGCAAAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAAAACAATGGCGGGGTCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700856" ref_strand="+" ref_description="SGN-E700856 [FA14BD11]">
      <seq>ctcttttagtttttaacttagttcctattttgatatttcattaccctttaccatcaatggcttccaattttttcctcaagaatattactgttgttcttcttcttttttccattcttagcctatatccctttatagtaacttcccgcaacttaaaagaattatccatgcttgaaaggcatgaaaattggatggttcatcatggacgtgtatacaaagatgatatagaaaaagaacaccgcttcaaaacattcaaggaaaacgttgagttcatcgaatctttcaacaagaacggaactcaacgttataagctagccatcaataaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctgcggccgcggctatagaaggagcatatcaaattgcaaacaacgaactaatctctctttcagagcaacaactattggattgctctacgcagaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="10091" stop="8345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9791" g_stop="9282" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8645" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="771" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E700856" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9791" e_stop="9282"/>
          <exon e_start="8905" e_stop="8645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTAGTTTTTAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATG</genome_strand>
        <mrna_strand>CTCTTTTAGTTTTTAACTTAGTTCCTATTTTGATATTTCATTACCCTTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719886" ref_strand="+" ref_description="SGN-E719886 [FC09AF08]">
      <seq>aatcggccgaattgattcactcagcctctcttttagtttttaacttagttcctattttgatatttcattaccatttaccatcaatggcttccaattttttcctcaagaatattactgttgttcttcttcttttttccattcttagcctatatccctttatagtaacttcccgcaacttaaaagaattatccatgcttgaaaggcatgaaaattggatggttcatcatggacgtgtatacaaagatgatatagaaaaagaacaccgcttcaaaacattcaaggaaaacgttgagttcatcgaatctttcaacaagaacggaactcaacgttataagctagccatcaataaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctgcggccgcggctatagaaggagcatatcaaattgcaaacaacgaactaatctctctttcaaagcaacaactattggattgctctacgcaaaacaaaggttgtgagggcggactaatgactgtcgcttacgacttcttacttcagaacaatggcgggggcattaccacagagactaattatccttatgaagaagctcaaaatgtttgcaagaccgaacaaccagcagcagttactatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="10106" stop="8348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9819" g_stop="9282" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8648" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="795" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E719886" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9819" e_stop="9282"/>
          <exon e_start="8905" e_stop="8648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGATAAGTTCTTATTCACTCAGCCTCTCTTTTAGTTTTTAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCA</genome_strand>
        <mrna_strand>AATCG-GCCGAATTGATTCACTCAGCCTCTCTTTTAGTTTTTAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAAAGCAACAACTATTGGATTGCTCTACGCAAAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282728" ref_strand="+" ref_description="SGN-E282728 [cLER-15-H8]">
      <seq>taacttagttcctattttgatatttcattaccatttaccatcaatggcttccaattttttcctcaagaatattactgttgttcttcttcttttttccattcttagcctatatccctttatagtaacttcccgcaacttaaaagaattatccatgcttgaaaggcatgaaaattggatggttcatcatggacgtgtatacaaagatgatatagaaaaagaacaccgcttcaaaacattcaaggaaaacgttgagttcatcgaatctttcaacaagaacggaactcaacgttataagctagccatcaataaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="10078" stop="8585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9778" g_stop="9282" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8885" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="518" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E282728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9778" e_stop="9282"/>
          <exon e_start="8905" e_stop="8885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTG</genome_strand>
        <mrna_strand>TAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283188" ref_strand="+" ref_description="SGN-E283188 [cLER-17-J17]">
      <seq>tgatatttcattaccatttaccatcaatggcttccaattttttcctcaagaatattactgttgttcttctttttttttccattcttagcctatatccctttatagtaacttcccgcaacttaaaagaattatccatgcttgaaaggcatgaaaattggatggttcatcatggacgtgtatacaaagatgatatagaaaaagaacaccgcttcaaaacattcaaggaaaacgttgagttcatcgaatctttcaacaagaacggaactcaacgttataagctagccatcaataaatatgctgatctgaccactgaggaattcacaacatcatttatggggctcgacacttcattactatcccagcaagaatcaacagctacaacaacgtcctttaaatatgatagtgtgactgaagttccaaatagcatggactggagaaagagagggagtgtcacaggagtcaaggatcaaggtgtatgtggatgttgttgggcattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="10061" stop="8585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9761" g_stop="9282" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8905" g_stop="8885" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="501" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E283188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9761" e_stop="9282"/>
          <exon e_start="8905" e_stop="8885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTGGTAAGACCAGTTCAAATTCTTATTCGTTTCACTTGAGTTGTGGTTAAGTATGTTCGTCTTAAAATATTGGTTATGCTTGTCGAGAATCAAACTATATGAATTTTAATATATAACTTAATATCATGTATTTTTTCGTCATATTGATACGAGAAGATCAATTCCTACTTATTGTTATTTAATTTTCATTTAGATTTTAAGTATCTAAATTATAATTTTAAAAGGTGACCACTATTTTTGAATAGACAGAGTATATATGTGTGCTCTTGAAAATTCTATATGCCAATAACCATCATGTGTAACTATAAATGGAAAGTTCAATTTCAAAATGTATAAACTAGGTACGTACTTGTTTTTAAATAAACTATCACACGTACAGGATGTTGTTGGGCATTTTCTG</genome_strand>
        <mrna_strand>TGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTTTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG........................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTGGGCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="18832" stop="17425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18532" g_stop="17725" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18532" e_stop="17725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="19491" stop="18243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19191" g_stop="18543" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19191" e_stop="18543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="19490" stop="18506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19190" g_stop="18806" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19190" e_stop="18806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267238" ref_strand="-" ref_description="SGN-E267238 [cLEI-4-H3]">
      <seq>catcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataacaacaatatgagttcttgtcagttaaaaaaaaaaaaaaaaaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27257" stop="25182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26957" g_stop="26425" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26424" i_stop="25503" i_length="922">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25502" g_stop="25482" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="554" r_length="21" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267238" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26957" e_stop="26425"/>
          <exon e_start="25502" e_stop="25482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTAATTAACTTGCTCTAAGTTAATTAAAAAATGGACAACCTTTTTTAGTCTACATATTGATGCAAACTATAGTTACAAAAAAAAGTTAGAAAATTCATATACATCTCTAGTTGATTAGGCGGTCTATCTGTGCAAATTATGTTCAAAGTTGTTTTTAAAAAAAATATATATATATATACACTATATATGAGCATCAATGTAGTAGGATGTTGGTCTGACCCAAATGGTAAGGCTTGGTGGGCTAATTTCTATCCTGAGTTGGGTCACAGGCCAAATTGGAAGAATGGGCTGCGTGATCCTTAAAATGGGTGACTATATACCTTTACCCAATCCTAGAACTTTGAAGCCAATCCTATAACTTTAGGTTTTACACTATGACATTTACGTTAAGTTATACAAAAATAAAAGGAAAATTTTTCAAAATGACAATATTTTAGCTTCTAATAGAATCTCGTGGCAAAAGTTTCATTATTTCTTTAAAATGTCAATATTTTAGTTTGTTAAGAGTTGAGTTATGTATTTTTTTAAAAAAGGAGCATTTCCAATTCAACATCAAATTTTACACCTAATTCTAAATTTGGTGTAAAATTTGATATTTTGAGGTTCAACCCACATCAATTTTACATCAAATCTGGTGTAACACTATTCATCATATCAATTCACTTTTTGAATATTAAACGTTCAATAAAATAGTAATTGACATTCACTATGAATTACTACGGAGAATGTTTTCGAAAGAATTTGTAATGAAAAGAGATAAAAATATACCTTTATGATGTAAAATTTAGTGTAGTAAGGACCAAAATAATGTTGACACCAAATTTAATGTAAAATTTGATGTTTGGATTGGAGATGCACTTCACAAGCCAAACCATCAAAAAAAGAAAAAGAGAAGATGATGAGGGAATAACTGAATTTGCAAGCAATTAAAAAAAAAAAAAATCCA</genome_strand>
        <mrna_strand>CATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266205" ref_strand="-" ref_description="SGN-E266205 [cLEI-3-A22]">
      <seq>gcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataacaacaatatgagttcttgtcagttaaaaaaaaaaaaaaaaaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27114" stop="25182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26814" g_stop="26425" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26424" i_stop="25503" i_length="922">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25502" g_stop="25482" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="411" r_length="21" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266205" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26814" e_stop="26425"/>
          <exon e_start="25502" e_stop="25482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTAATTAACTTGCTCTAAGTTAATTAAAAAATGGACAACCTTTTTTAGTCTACATATTGATGCAAACTATAGTTACAAAAAAAAGTTAGAAAATTCATATACATCTCTAGTTGATTAGGCGGTCTATCTGTGCAAATTATGTTCAAAGTTGTTTTTAAAAAAAATATATATATATATACACTATATATGAGCATCAATGTAGTAGGATGTTGGTCTGACCCAAATGGTAAGGCTTGGTGGGCTAATTTCTATCCTGAGTTGGGTCACAGGCCAAATTGGAAGAATGGGCTGCGTGATCCTTAAAATGGGTGACTATATACCTTTACCCAATCCTAGAACTTTGAAGCCAATCCTATAACTTTAGGTTTTACACTATGACATTTACGTTAAGTTATACAAAAATAAAAGGAAAATTTTTCAAAATGACAATATTTTAGCTTCTAATAGAATCTCGTGGCAAAAGTTTCATTATTTCTTTAAAATGTCAATATTTTAGTTTGTTAAGAGTTGAGTTATGTATTTTTTTAAAAAAGGAGCATTTCCAATTCAACATCAAATTTTACACCTAATTCTAAATTTGGTGTAAAATTTGATATTTTGAGGTTCAACCCACATCAATTTTACATCAAATCTGGTGTAACACTATTCATCATATCAATTCACTTTTTGAATATTAAACGTTCAATAAAATAGTAATTGACATTCACTATGAATTACTACGGAGAATGTTTTCGAAAGAATTTGTAATGAAAAGAGATAAAAATATACCTTTATGATGTAAAATTTAGTGTAGTAAGGACCAAAATAATGTTGACACCAAATTTAATGTAAAATTTGATGTTTGGATTGGAGATGCACTTCACAAGCCAAACCATCAAAAAAAGAAAAAGAGAAGATGATGAGGGAATAACTGAATTTGCAAGCAATTAAAAAAAAAAAAAATCCA</genome_strand>
        <mrna_strand>GCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267213" ref_strand="-" ref_description="SGN-E267213 [cLEI-4-M8]">
      <seq>gattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataacaacaatatgagttcttgtcagttaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27240" stop="26120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26940" g_stop="26425" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="537"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267213" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26940" e_stop="26425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTA</genome_strand>
        <mrna_strand>GATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265793" ref_strand="+" ref_description="SGN-E265793 [cLEI-11-P2]">
      <seq>ttttttgttataaaggaaccataatacgatttgcatatataaaaaataggatgcggtttccccatgctgaggaaaaccttttattcaaacaatacatgaaataacaaaacaacaatttgaaatccaactgctttgatctctcagaactcatactcatcacgatcctggagaagccaagttccatcttcttgttgaaccattcctttgtgcttctcagaccaccaaaggggaggaatacaatgttcatctttcagtacgttccactgtttgttcacaagtgaaatatcgcgattcacctctagtttaaaacctgctaacattcctattccttgagtcccagcaattccatgcaaatatggttccaataaatgccagctcacaggttctcctggaggcttcacatacggagattttgtcgtatcaatcattatctcctgaccaacgtcaaaatacccgatgggtgggtatttcggaacaatatccaatacattatgaatcctcaagatatgaagatgcttcagtttggaaaatgcattgagaaaattgacatctccaactttagggcttgcgaatacaaaagcagtcactggaaactccttgccattacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="+" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="26144" stop="27353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26443" g_stop="27053" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="+" ref_id="SGN-E265793" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26443" e_stop="27053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGTTATAAAGGAACCATAATACGATTTGCATATATAAAAAATAGGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAATCCTCAAGATATGAAGATGCTTCAGTTTGGAAAATGCATTGAGAAAATTGACATCTCCAACTTTAGGGCTTGCGAATACAAAAGCAGTCACTGGAAACTCCTTGCCATTACTTGC</genome_strand>
        <mrna_strand>TTTTTTGTTATAAAGGAACCATAATACGATTTGCATATATAAAAAATAGGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAATCCTCAAGATATGAAGATGCTTCAGTTTGGAAAATGCATTGAGAAAATTGACATCTCCAACTTTAGGGCTTGCGAATACAAAAGCAGTCACTGGAAACTCCTTGCCATTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265794" ref_strand="+" ref_description="SGN-E265794 [cLEI-11-P6]">
      <seq>ttttttgttataaaggaaccataatacgatttgcatatataaaaaataggatgcggtttccccatgctgaggaaaaccttttattcaaacaatacatgaaataacaaaacaacaatttgaaatccaactgctttgatctctcagaactcatactcatcacgatcctggagaagccaagttccatcttcttgttgaaccattcctttgtgcttctcagaccaccaaaggggaggaatacaatgttcatctttcagtacgttccactgtttgttcacaagtgaaatatcgcgattcacctctagtttaaaacctgctaacattcctattccttgagtcccagcaattccatgcaaatatggttccaataaatgccagctcacaggttctcctggaggcttcacatacggagattttgtcgtatcaatcattatctcctgaccaacgtcaaaatacccgatgggtgggtatttcggaacaatatccaatacattatgaatcctcaagatatgaagatgcttcagtttggaaaatgcattgagaaaattgacatctccaactttagggcttgcgaatacaaaagcagtcactggaaactccttgccattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="+" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="26144" stop="27349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26443" g_stop="27049" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="+" ref_id="SGN-E265794" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26443" e_stop="27049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGTTATAAAGGAACCATAATACGATTTGCATATATAAAAAATAGGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAATCCTCAAGATATGAAGATGCTTCAGTTTGGAAAATGCATTGAGAAAATTGACATCTCCAACTTTAGGGCTTGCGAATACAAAAGCAGTCACTGGAAACTCCTTGCCATTAC</genome_strand>
        <mrna_strand>TTTTTTGTTATAAAGGAACCATAATACGATTTGCATATATAAAAAATAGGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAATCCTCAAGATATGAAGATGCTTCAGTTTGGAAAATGCATTGAGAAAATTGACATCTCCAACTTTAGGGCTTGCGAATACAAAAGCAGTCACTGGAAACTCCTTGCCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267025" ref_strand="-" ref_description="SGN-E267025 [cLEI-4-E9]">
      <seq>ttttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactaaaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataacaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27285" stop="26142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26985" g_stop="26445" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="558"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267025" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267025" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26985" e_stop="26445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACA</genome_strand>
        <mrna_strand>TTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAAAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267602" ref_strand="-" ref_description="SGN-E267602 [cLEI-8-H9]">
      <seq>tttcaaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27271" stop="26142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26971" g_stop="26445" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="542"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267602" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267602" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26971" e_stop="26445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACA</genome_strand>
        <mrna_strand>TTTCAAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267791" ref_strand="-" ref_description="SGN-E267791 [cLEI-12-L12]">
      <seq>cataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataacaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27236" stop="26142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26936" g_stop="26445" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="507"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267791" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267791" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26936" e_stop="26445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACA</genome_strand>
        <mrna_strand>CATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265246" ref_strand="-" ref_description="SGN-E265246 [cLEI-9-C13]">
      <seq>caaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacaaaggaatggttcaacaagaagatggaacttggcttctccaggatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaattgttgttttgttatttcatgtattgtttgaataaaaggttttcctcagcatggggaaaccgcatcctattttttatatatgcaaatcgtattatggttcctttataacaaaaaaaaaaaaaaaaaaaactcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27074" stop="26142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26774" g_stop="26445" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="347"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265246" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265246" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26774" e_stop="26445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACA</genome_strand>
        <mrna_strand>CAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267519" ref_strand="+" ref_description="SGN-E267519 [cLEI-8-C17]">
      <seq>tttttattaaggaaccataatacgatttgcatatataaaaaataagatgcggtttccccatgctgaggaaaaccttttattcaaacaatacatgaaataacaaaacaacaatttgaaatccaactgctttgatctctcagaactcatactcatcacgatcctggagaagccaagttccatcttcttgttgaaccattcctttgtgcttctcagaccaccaaaggggaggaatacaatgttcatctttcagtacgttccactgtttgttcacaagtgaaatatcgcgattcacctctagtttaaaacctgctaacattcctattccttgagtcccagcaattccatgcaaatatggttccaataaatgccagctcacaggttctcctggaggcttcacatacggagattttgtcgtatcaatcattatctcctgaccaacgtcaaaatacccgatgggtgggtatttcggaacaatatccaatacattatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="+" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="26146" stop="27238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26447" g_stop="26938" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="+" ref_id="SGN-E267519" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26447" e_stop="26938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTATAAAGGAACCATAATACGATTTGCATATATAAAAAATAGGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAA</genome_strand>
        <mrna_strand>TTTTTATTAAGGAACCATAATACGATTTGCATATATAAAAAATAAGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266238" ref_strand="+" ref_description="SGN-E266238 [cLEI-3-M6]">
      <seq>agtgactgcttttgtattcgcaagccctaaagttggagatgtcaattctctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaagaataggaatgttagcacgttttaaactacaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagcacacaggaatggttcaacaagaagatggaacttggcttctccaagatcgtgatgagtatgagttctgagagatcaaagcagttggatttcaaatagtagatttgctatttcatgtattgtttgaataaaatgttttcctcagcatggggaaaccgcatcctattgtttatatatgcaaatcgtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27330" stop="26164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27030" g_stop="26464" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266238" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27030" e_stop="26464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTA</genome_strand>
        <mrna_strand>AGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTCTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAAGAATAGGAATGTTAGCACGTTTTAAACTACAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACACAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAAGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATAGTAGATTTGCTATTTCATGTATTGTTTGAATAAAATGTTTTCCTCAGCATGGGGAAACCGCATCCTATTGTTTATATATGCAAATCGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266915" ref_strand="+" ref_description="SGN-E266915 [cLEI-7-C10]">
      <seq>ttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcacgagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtgggctggaaagcacaaaggaatggttcaacaagaagatggaacttggcttttccaggatcgtgatgagtatgagttctgagagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27371" stop="26275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27071" g_stop="26575" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266915" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27071" e_stop="26575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAA</genome_strand>
        <mrna_strand>TTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCACGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGGCTGGAAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTTTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267084" ref_strand="+" ref_description="SGN-E267084 [cLEI-4-M18]">
      <seq>tttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctttggtggtctgagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27597" stop="26351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27297" g_stop="27271" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="26651" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="565" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27297" e_stop="27271"/>
          <exon e_start="27188" e_stop="26651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGC</genome_strand>
        <mrna_strand>TTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266516" ref_strand="+" ref_description="SGN-E266516 [cLEI-5-I6]">
      <seq>agattggttgtggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattgtccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttctaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27470" stop="26367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27170" g_stop="26667" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266516" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27170" e_stop="26667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTT</genome_strand>
        <mrna_strand>AGATTGGTTGTGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTGTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTCTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265253" ref_strand="+" ref_description="SGN-E265253 [cLEI-9-G15]">
      <seq>aataagacgtgtgttggggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgaccaaatcttccttttgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaacaaacagtggaacgtactgaaagatgaacattgtattcctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27492" stop="26369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27294" g_stop="27271" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="26669" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="545" r_length="521" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265253" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27294" e_stop="27271"/>
          <exon e_start="27188" e_stop="26669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATC-TCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCC</genome_strand>
        <mrna_strand>AATAAGACGTGTGTTGGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACCAAATCTTCCTTTTGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267777" ref_strand="+" ref_description="SGN-E267777 [cLEI-12-F12]">
      <seq>cacagtttaataagacgtgtgttagggatcaggtgatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaatgttagcaggttttaaactagaggtgaatcgcgatatttcacttgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27602" stop="26412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27302" g_stop="27271" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="26712" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="509" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267777" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27302" e_stop="27271"/>
          <exon e_start="27188" e_stop="26712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAAC</genome_strand>
        <mrna_strand>CACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTGATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265334" ref_strand="+" ref_description="SGN-E265334 [cLEI-9-L23]">
      <seq>ggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccatgagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggactcaaggaataggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27678" stop="26462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27378" g_stop="27271" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="26762" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="535" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27378" e_stop="27271"/>
          <exon e_start="27188" e_stop="26762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAA</genome_strand>
        <mrna_strand>GGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCATGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266077" ref_strand="+" ref_description="SGN-E266077 [cLEI-6-G2]">
      <seq>tcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattgatacgacaaaatctccgtatgtgaagcctccaggagaacctgtgagctggcatttattggaaccatatttgcatggaattgctgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27655" stop="26475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27355" g_stop="27271" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="26775" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="499" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27355" e_stop="27271"/>
          <exon e_start="27188" e_stop="26775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACT</genome_strand>
        <mrna_strand>TCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267920" ref_strand="+" ref_description="SGN-E267920 [cLEI-12-F8]">
      <seq>aactttgcaagtattggagtgggttaatgaccttgaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaataaaatcaataaagcaagtaatggcaaggagtttccagtgactgcttttgtattcgcaagccctaaagttggagatgtcaattttctcaatgcattttccaaactgaagcatcttcatatcttgaggattcataatgtattggatattgttccgaaatacccacccatcgggtattttgacgttggtcaggagataatgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27751" stop="26563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27451" g_stop="27271" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="26863" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="507" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267920" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27451" e_stop="27271"/>
          <exon e_start="27188" e_stop="26863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGA</genome_strand>
        <mrna_strand>AACTTTGCAAGTATTGGAGTGGGTTAATGACCTTGAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267390" ref_strand="+" ref_description="SGN-E267390 [cLEI-8-I5]">
      <seq>cacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaagtgcatcacttgcaactctaaatgcagttgacatagctctcaataaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27893" stop="26759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27593" g_stop="27271" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27059" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="453" r_length="130" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267390" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27593" e_stop="27271"/>
          <exon e_start="27188" e_stop="27059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCA</genome_strand>
        <mrna_strand>CACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAAGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTCTCAATAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265146" ref_strand="+" ref_description="SGN-E265146 [cLEI-2-C4]">
      <seq>gactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27980" stop="26774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27681" g_stop="27271" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27074" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="526" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27681" e_stop="27271"/>
          <exon e_start="27188" e_stop="27074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAG</genome_strand>
        <mrna_strand>GACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265571" ref_strand="+" ref_description="SGN-E265571 [cLEI-14-F12]">
      <seq>gtccatgccttttcctgatgctttcataacgaaatggttgtttagggaagcatggggtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtatcggagtgggttaatgaccttcaatttttacttgtcccaccaccccaagtttttggtgatggaggtttgcttcctttgtttcatactttggtgcatcatggcttccataacatttatacaactgaaaatccaccatcacagtttaataagacgtgtgttagggatcatgtaatggaagaagtgaaaagattggtggaggaatataacgatgaagaggtgagcataactgtgactggacacagcctacgtgcatcacttgcaactctaaatgcatttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27900" stop="26776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27601" g_stop="27271" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27076" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="444" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265571" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27601" e_stop="27271"/>
          <exon e_start="27188" e_stop="27076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACAT</genome_strand>
        <mrna_strand>GTCCATGCCTTTTCCTGATGCTTTCATAACGAAATGGTTGTTTAGGGAAGCATGGGGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATCGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCACCACCCCAAGTTTTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATACTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACCATCACAGTTTAATAAGACGTGTGTTAGGGATCAT..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAACGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTACGTGCATCACTTGCAACTCTAAATGCATTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267752" ref_strand="+" ref_description="SGN-E267752 [cLEI-12-L7]">
      <seq>aacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaagattggtggaggaatataaggatgaagaggtgagcataactgtgactggacacagcctaggtgcatcacttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28036" stop="26794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27736" g_stop="27271" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27094" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="561" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27736" e_stop="27271"/>
          <exon e_start="27188" e_stop="27094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAAC</genome_strand>
        <mrna_strand>AACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267423" ref_strand="+" ref_description="SGN-E267423 [cLEI-8-E12]">
      <seq>aaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaagtaatggaagaagtgaaaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28192" stop="26866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27892" g_stop="27271" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27166" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="645" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267423" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27892" e_stop="27271"/>
          <exon e_start="27188" e_stop="27166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGATT</genome_strand>
        <mrna_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAA..................................................................................GTAATGGAAGAAGTGAAAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265344" ref_strand="+" ref_description="SGN-E265344 [cLEI-9-D16]">
      <seq>gcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28154" stop="26868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27854" g_stop="27271" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27168" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="605" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27854" e_stop="27271"/>
          <exon e_start="27188" e_stop="27168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAAAGA</genome_strand>
        <mrna_strand>GCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268611" ref_strand="+" ref_description="SGN-E268611 [cLEI-13-D16]">
      <seq>tgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28194" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27894" g_stop="27271" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27171" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="642" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27894" e_stop="27271"/>
          <exon e_start="27188" e_stop="27171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAA</genome_strand>
        <mrna_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265566" ref_strand="+" ref_description="SGN-E265566 [cLEI-14-B16]">
      <seq>cattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28059" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27759" g_stop="27271" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27171" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="507" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27759" e_stop="27271"/>
          <exon e_start="27188" e_stop="27171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAAA</genome_strand>
        <mrna_strand>CATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267753" ref_strand="+" ref_description="SGN-E267753 [cLEI-12-L9]">
      <seq>ggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatggaagaagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28122" stop="26872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27822" g_stop="27271" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27172" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="569" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27822" e_stop="27271"/>
          <exon e_start="27188" e_stop="27172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAGAAGTGAA</genome_strand>
        <mrna_strand>GGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGAAGAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265749" ref_strand="+" ref_description="SGN-E265749 [cLEI-11-K18]">
      <seq>aataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaagtaatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28165" stop="26969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27865" g_stop="27271" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27179" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="605" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265749" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27865" e_stop="27271"/>
          <exon e_start="27188" e_stop="27179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGAAG</genome_strand>
        <mrna_strand>AATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAA..................................................................................GTAATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267589" ref_strand="+" ref_description="SGN-E267589 [cLEI-8-D7]">
      <seq>caacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatcaggtaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28037" stop="26969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27737" g_stop="27271" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27188" g_stop="27181" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="475" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27737" e_stop="27271"/>
          <exon e_start="27188" e_stop="27181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAGGTGCGCGCATCATGTTAATGCTTTTACTTCATATATTACCTATAGATTCGATCTAACAATTCAATTCATTATTTCCTTTTAGGTAATGGA</genome_strand>
        <mrna_strand>CAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG..................................................................................GTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268135" ref_strand="+" ref_description="SGN-E268135 [cLEI-15-G2]">
      <seq>acaaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28202" stop="26972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27902" g_stop="27272" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27902" e_stop="27272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCA</genome_strand>
        <mrna_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265806" ref_strand="+" ref_description="SGN-E265806 [cLEI-11-G15]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="26973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27273" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATC</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269190" ref_strand="+" ref_description="SGN-E269190 [cLEI-16-H15]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggataggaactctgcaagtattggagtgggttaatgaccttcaatttttacttgtaccagcaccccaagtatttggtgatggaggaatgcttcctttgttacatcctttggtgcatcatggcttccataacatttatacaactgaaaattcacgatcacagtttaataagacgtgtgttaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="26973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27273" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269190" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATC</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGATAGGAACTCTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTACCAGCACCCCAAGTATTTGGTGATGGAGGAATGCTTCCTTTGTTACATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATTCACGATCACAGTTTAATAAGACGTGTGTTAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267267" ref_strand="+" ref_description="SGN-E267267 [cLEI-4-B16]">
      <seq>gacactttcatttcagagagagcatctaaatatgcaggagctagcagatgctctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28029" stop="26973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27729" g_stop="27273" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267267" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27729" e_stop="27273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATC</genome_strand>
        <mrna_strand>GACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATGCTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267167" ref_strand="+" ref_description="SGN-E267167 [cLEI-4-G13]">
      <seq>gacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccacaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28029" stop="26973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27729" g_stop="27273" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27729" e_stop="27273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATC</genome_strand>
        <mrna_strand>GACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCACAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266387" ref_strand="+" ref_description="SGN-E266387 [cLEI-3-I12]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaacccctttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgttagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="26974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27274" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266387" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCC-TTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGAT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265462" ref_strand="+" ref_description="SGN-E265462 [cLEI-9-F8]">
      <seq>aaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28192" stop="26980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27892" g_stop="27280" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27892" e_stop="27280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTT</genome_strand>
        <mrna_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265129" ref_strand="+" ref_description="SGN-E265129 [cLEI-2-I15]">
      <seq>aaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28192" stop="26981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27892" g_stop="27281" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27892" e_stop="27281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGT</genome_strand>
        <mrna_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268542" ref_strand="+" ref_description="SGN-E268542 [cLEI-13-K8]">
      <seq>ggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtcaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggctaccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28122" stop="26982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27822" g_stop="27282" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27822" e_stop="27282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTG</genome_strand>
        <mrna_strand>GGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTCAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTACCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268193" ref_strand="+" ref_description="SGN-E268193 [cLEI-15-D10]">
      <seq>gagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagacgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28052" stop="26982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27752" g_stop="27282" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27752" e_stop="27282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTG</genome_strand>
        <mrna_strand>GAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265795" ref_strand="+" ref_description="SGN-E265795 [cLEI-11-A11]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatgggctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="26987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27287" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265795" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGAC</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATGGGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265986" ref_strand="+" ref_description="SGN-E265986 [cLEI-6-L13]">
      <seq>tcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28075" stop="26989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27775" g_stop="27289" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27775" e_stop="27289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAG</genome_strand>
        <mrna_strand>TCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267443" ref_strand="+" ref_description="SGN-E267443 [cLEI-8-M14]">
      <seq>aaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28189" stop="26991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27889" g_stop="27291" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27889" e_stop="27291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATA</genome_strand>
        <mrna_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267911" ref_strand="+" ref_description="SGN-E267911 [cLEI-12-D2]">
      <seq>tgctgagaaatgggaggaacttagtggaaaaaacgattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28147" stop="26992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27847" g_stop="27292" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267911" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27847" e_stop="27292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAAT</genome_strand>
        <mrna_strand>TGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACGATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267246" ref_strand="+" ref_description="SGN-E267246 [cLEI-4-J9]">
      <seq>tgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttnctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28194" stop="26993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27894" g_stop="27293" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267246" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27894" e_stop="27293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAA</genome_strand>
        <mrna_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTNCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268956" ref_strand="+" ref_description="SGN-E268956 [cLEI-16-G11]">
      <seq>aaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="26993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27293" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAA</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267459" ref_strand="+" ref_description="SGN-E267459 [cLEI-8-H15]">
      <seq>aattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgggattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttggcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28049" stop="26993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27749" g_stop="27293" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267459" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27749" e_stop="27293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAA</genome_strand>
        <mrna_strand>AATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGGGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGGCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265830" ref_strand="+" ref_description="SGN-E265830 [cLEI-11-E4]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="26995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27295" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268504" ref_strand="+" ref_description="SGN-E268504 [cLEI-13-M17]">
      <seq>ctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcccttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28145" stop="26995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27845" g_stop="27295" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268504" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27845" e_stop="27295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTT</genome_strand>
        <mrna_strand>CTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCCTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267082" ref_strand="+" ref_description="SGN-E267082 [cLEI-4-M12]">
      <seq>tgacccaaaaaagtattgggtcaccaaatatatctatgctacctaatccatgccacttcctgatgctttcataacgaaatcattgccaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgcgattaattggagaggaactttgcaagtattgcagtgggtcaatgaccttcaacttttacttgtcccagcaccccaagtatttggtgatggaggcttgcttcctttgttacatcctttggtgcatcatggcttccataacatatatacaactgaaaatacacgatcacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="27946" stop="26997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27646" g_stop="27297" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267082" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27646" e_stop="27297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGT</genome_strand>
        <mrna_strand>TGACCCAAAAAAGTATTGGGTCACCAAATATATCTATGCTACCTAATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGCCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGCGATTAATTGGAGAGGAACTTTGCAAGTATTGCAGTGGGTCAATGACCTTCAACTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGCTTGCTTCCTTTGTTACATCCTTTGGTGCATCATGGCTTCCATAACATATATACAACTGAAAATACACGATCACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266229" ref_strand="+" ref_description="SGN-E266229 [cLEI-3-I24]">
      <seq>aaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28189" stop="26998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27889" g_stop="27298" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27889" e_stop="27298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAG</genome_strand>
        <mrna_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266395" ref_strand="+" ref_description="SGN-E266395 [cLEI-3-M10]">
      <seq>gaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaaaatccacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28193" stop="27001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27893" g_stop="27301" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27893" e_stop="27301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCA</genome_strand>
        <mrna_strand>GAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268148" ref_strand="+" ref_description="SGN-E268148 [cLEI-15-K6]">
      <seq>gagaacaaaacaaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28211" stop="27013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27911" g_stop="27313" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27911" e_stop="27313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAAAACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAA</genome_strand>
        <mrna_strand>GAGAACAAAACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267029" ref_strand="+" ref_description="SGN-E267029 [cLEI-4-G3]">
      <seq>tgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttnctttgtttcatcccttggtgcatcatggcttccataacatttatacaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28194" stop="27013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27894" g_stop="27313" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27894" e_stop="27313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAA</genome_strand>
        <mrna_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTNCTTTGTTTCATCCCTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268534" ref_strand="+" ref_description="SGN-E268534 [cLEI-13-I2]">
      <seq>aaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgaatggggtttgcttnctttgtttcatcccttggtgcatcatggcttccataacatttatacaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="27013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27313" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268534" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAA</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAATGGGGTTTGCTTNCTTTGTTTCATCCCTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265053" ref_strand="+" ref_description="SGN-E265053 [cLEI-2-I18]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcccttggtgcatcatggcttccataacatttatacaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27315" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265053" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTG</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCCTTGGTGCATCATGGCTTCCATAACATTTATACAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268001" ref_strand="+" ref_description="SGN-E268001 [cLEI-15-E10]">
      <seq>acaaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgagattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccaacaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttatacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28202" stop="27017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27902" g_stop="27317" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268001" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27902" e_stop="27317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAAC</genome_strand>
        <mrna_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGAGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAACACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266419" ref_strand="+" ref_description="SGN-E266419 [cLEI-3-J13]">
      <seq>gaatattggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28166" stop="27021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27866" g_stop="27321" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27866" e_stop="27321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATA</genome_strand>
        <mrna_strand>GAATATTGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267722" ref_strand="+" ref_description="SGN-E267722 [cLEI-12-O8]">
      <seq>cttggatcttgatcttcgtaaatacatcattcatgacggagaattggctcaagcaacttatgacactttcatttcaaagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgctttctttgattcatcctttggtgcatcatggcttccataacatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28090" stop="27021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27790" g_stop="27321" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267722" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27790" e_stop="27321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATA</genome_strand>
        <mrna_strand>CTTGGATCTTGATCTTCGTAAATACATCATTCATGACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAAAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTTCTTTGATTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268516" ref_strand="+" ref_description="SGN-E268516 [cLEI-13-C4]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcccttggtgcatcatggcttccataacatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27322" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268516" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTAT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCCTTGGTGCATCATGGCTTCCATAACATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266155" ref_strand="+" ref_description="SGN-E266155 [cLEI-6-J12]">
      <seq>aaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcatcctttggtgcatcatggcttccataacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="27025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27325" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATT</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267650" ref_strand="+" ref_description="SGN-E267650 [cLEI-8-P18]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27376" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGA</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265593" ref_strand="+" ref_description="SGN-E265593 [cLEI-14-P12]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27378" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATG</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267683" ref_strand="+" ref_description="SGN-E267683 [cLEI-12-A22]">
      <seq>aaagagtgaaaaaaacatagaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27379" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267683" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAGAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265189" ref_strand="+" ref_description="SGN-E265189 [cLEI-2-F5]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27379" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265488" ref_strand="+" ref_description="SGN-E265488 [cLEI-14-C2]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27379" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265569" ref_strand="+" ref_description="SGN-E265569 [cLEI-14-D16]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27379" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269146" ref_strand="+" ref_description="SGN-E269146 [cLEI-16-A18]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27379" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269251" ref_strand="+" ref_description="SGN-E269251 [cLEI-16-P2]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27379" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265391" ref_strand="+" ref_description="SGN-E265391 [cLEI-9-M3]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaagttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaattcaatttttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27379" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265391" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAA-TCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAAGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATTCAATTTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265771" ref_strand="+" ref_description="SGN-E265771 [cLEI-11-B6]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaaggatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27379" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAAGGATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268087" ref_strand="+" ref_description="SGN-E268087 [cLEI-15-N22]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27379" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268413" ref_strand="+" ref_description="SGN-E268413 [cLEI-13-J15]">
      <seq>aaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27379" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269038" ref_strand="+" ref_description="SGN-E269038 [cLEI-16-H5]">
      <seq>gagtgaaaaaaacatacaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttactggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggggaattggctcaagcaacttatgacactttcatttcagaaagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27381" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269038" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTG</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATACAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTACTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGGGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAAAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266526" ref_strand="+" ref_description="SGN-E266526 [cLEI-5-M6]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattgagccgcttgggtgttgagcttcggaaatgcgtcattcattacngagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagccagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccccaagtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27385" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266526" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTT</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTGAGCCGCTTGGGTGTTGAGCTTCGGAAATGCGTCATTCATTACNGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCCAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269114" ref_strand="+" ref_description="SGN-E269114 [cLEI-16-G7]">
      <seq>aaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattatgaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaattttttacttgtcccagcaccccaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="27088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27388" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269114" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAA-TTTTTACTTGTCCCAGCACCCCAAGTA</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTATGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTTACTTGTCCCAGCACCCCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265148" ref_strand="+" ref_description="SGN-E265148 [cLEI-2-C8]">
      <seq>acaaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28202" stop="27094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27902" g_stop="27394" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27902" e_stop="27394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCC</genome_strand>
        <mrna_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265654" ref_strand="+" ref_description="SGN-E265654 [cLEI-14-B20]">
      <seq>tgaaaaaaacataaaagatcaagaaaaagaataagtggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28194" stop="27094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27894" g_stop="27394" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265654" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27894" e_stop="27394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAA-TGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCC</genome_strand>
        <mrna_strand>TGAAAAAAACATAAAAGATCAAGAAAAAGAATAAGTGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266827" ref_strand="+" ref_description="SGN-E266827 [cLEI-7-J7]">
      <seq>aaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgtcccagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28189" stop="27095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27889" g_stop="27395" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27889" e_stop="27395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACC</genome_strand>
        <mrna_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266686" ref_strand="+" ref_description="SGN-E266686 [cLEI-5-N15]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaaccttagtggaaaaaacaattgggatgggcctattaaaccccttggatcttgatcttcgtaaataccatcattcattaccggagaattggctcaagccaccttatgaccacctttcatttcagagagagcatctaaatatgcaggagctagcagatacctctatggaaaacttctttacctaaggttggacctcgaccccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccctgccacttcctgatgctttcataaccgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgcggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaacttcgcacgtattggagcgggttaatgaccttcaatttttacttgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27402" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266686" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAAC-TTAGTGGAAAAAACAATTGGGATGGG-CTATTAAACCCCTTGGATCTTGATCTTCGTAAATA-CATCATTCATTA-CGGAGAATTGGCTCAAG-CAACTTATGA-CA-CTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATA-CTCTATGGAAAACTTCTTTA-CTAAGGTTGGA-CTTGA-CCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAA-CGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCC</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACCTTAGTGGAAAAAACAATTGGGATGGGCCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACCATCATTCATTACCGGAGAATTGGCTCAAGCCACCTTATGACCACCTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACCTCTATGGAAAACTTCTTTACCTAAGGTTGGACCTCGACCCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCCTGCCACTTCCTGATGCTTTCATAACCGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGCGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTCGCACGTATTGGAGCGGGTTAATGACCTTCAATTTTTACTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266960" ref_strand="+" ref_description="SGN-E266960 [cLEI-7-L13]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27404" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268399" ref_strand="+" ref_description="SGN-E268399 [cLEI-13-D13]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27405" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTG</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267610" ref_strand="+" ref_description="SGN-E267610 [cLEI-8-L21]">
      <seq>gagaacaaaacaaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgacctttaatttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28211" stop="27106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27911" g_stop="27406" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267610" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27911" e_stop="27406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAAAACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTT</genome_strand>
        <mrna_strand>GAGAACAAAACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTTAATTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267307" ref_strand="+" ref_description="SGN-E267307 [cLEI-17-E23]">
      <seq>aaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtgaaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28192" stop="27106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27892" g_stop="27406" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27892" e_stop="27406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTT</genome_strand>
        <mrna_strand>AAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGAAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266264" ref_strand="+" ref_description="SGN-E266264 [cLEI-3-H1]">
      <seq>acataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgggtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28186" stop="27108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27886" g_stop="27408" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27886" e_stop="27408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTAC</genome_strand>
        <mrna_strand>ACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGGGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269040" ref_strand="+" ref_description="SGN-E269040 [cLEI-16-H9]">
      <seq>aaagagtgaaaaaaacataatatatcaagaaaaagaataatggcttgcatatgtgctgagaaatgggaggaacttattggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgggttaatgaccttcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27413" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269040" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAATATATCAAGAAAAAGAATAATGGCTTGCATATGTGCTGAGAAATGGGAGGAACTTATTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268428" ref_strand="+" ref_description="SGN-E268428 [cLEI-13-P17]">
      <seq>tgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaactttgcaagtattggagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28147" stop="27130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27847" g_stop="27430" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27847" e_stop="27430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGG</genome_strand>
        <mrna_strand>TGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265321" ref_strand="+" ref_description="SGN-E265321 [cLEI-9-H7]">
      <seq>agtgaaaaaaacataaaagatcaagaaaaataataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaagttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28196" stop="27148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27896" g_stop="27448" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27896" e_stop="27448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACT</genome_strand>
        <mrna_strand>AGTGAAAAAAACATAAAAGATCAAGAAAAATAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAAGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266909" ref_strand="+" ref_description="SGN-E266909 [cLEI-7-O21]">
      <seq>aaaacataaaagatcaagaaaaagaataatggctggcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28189" stop="27148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27889" g_stop="27448" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266909" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27889" e_stop="27448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACT</genome_strand>
        <mrna_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTGGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265022" ref_strand="+" ref_description="SGN-E265022 [cLEI-2-I1]">
      <seq>aaacataaaagatcaagaaaaagaatcttggcttgcatatttgctgataaatgggaggaacttagtggaaaaaacaattgtgatgggctattcaaccccttgaatcttgatctccgcaaatacatcattcattacgcaaaatcggctcaagcaacatatgacactattatttgagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttatttactaaggttggacttgacccaaaaaagtatagcgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataaccaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctgctgatgagggtaaagcttcattaggaaggagggatattgtgattaattggagaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="27149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27449" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265022" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAAC</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATCTTGGCTTGCATATTTGCTGATAAATGGGAGGAACTTAGTGGAAAAAACAATTGTGATGGGCTATTCAACCCCTTGAATCTTGATCTCCGCAAATACATCATTCATTACGCAAAATCGGCTCAAGCAACATATGACACTATTATTTGAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTATTTACTAAGGTTGGACTTGACCCAAAAAAGTATAGCGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACCAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTGCTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265552" ref_strand="+" ref_description="SGN-E265552 [cLEI-14-N3]">
      <seq>gaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctatgaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatattgtgattaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28193" stop="27157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27893" g_stop="27457" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27893" e_stop="27457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGG</genome_strand>
        <mrna_strand>GAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATGAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310708" ref_strand="+" ref_description="SGN-E310708 [cLEZ-15-M11]">
      <seq>acaaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28202" stop="27170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27902" g_stop="27470" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E310708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27902" e_stop="27470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATAT</genome_strand>
        <mrna_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267673" ref_strand="+" ref_description="SGN-E267673 [cLEI-12-K17]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcattaggaaggagggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27471" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATA</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265709" ref_strand="+" ref_description="SGN-E265709 [cLEI-11-I3]">
      <seq>acatagagtgaaacaaacgtaatagatcacgacaaagaataatggcttgcatatgagctgagaaatggaaggaactgagcggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcatgagctagcagatactatatggaaaacttctttactaacgttggacttgacccacaaaagtattgtgtgaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaatcctatgggatatattgctgtggctactgatgagggtaaagcttcattaggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28202" stop="27178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27902" g_stop="27478" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265709" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27902" e_stop="27478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGG</genome_strand>
        <mrna_strand>ACATAGAGTGAAACAAACGTAATAGATCACGACAAAGAATAATGGCTTGCATATGAGCTGAGAAATGGAAGGAACTGAGCGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCATGAGCTAGCAGATACTATATGGAAAACTTCTTTACTAACGTTGGACTTGACCCACAAAAGTATTGTGTGACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATCCTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267350" ref_strand="+" ref_description="SGN-E267350 [cLEI-17-I13]">
      <seq>aaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28188" stop="27184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27484" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTA</genome_strand>
        <mrna_strand>AAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269219" ref_strand="+" ref_description="SGN-E269219 [cLEI-16-D24]">
      <seq>aaagagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatgtgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28200" stop="27185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27900" g_stop="27485" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E269219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27900" e_stop="27485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATT</genome_strand>
        <mrna_strand>AAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATGTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265320" ref_strand="+" ref_description="SGN-E265320 [cLEI-9-H5]">
      <seq>agtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28196" stop="27186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27896" g_stop="27486" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27896" e_stop="27486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCAT</genome_strand>
        <mrna_strand>AGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267031" ref_strand="+" ref_description="SGN-E267031 [cLEI-4-G7]">
      <seq>gaaaaaaacataaaagatcaagaaaaagaataatggcttgcataggtgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttgtatgctacctaatgcatgccacttcctgatgctttcatgacgaagtcattgtcaagggaggcatggagttaggaatcaaaatttatgggatatattgctgtggctactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28193" stop="27201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27893" g_stop="27501" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267031" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27893" e_stop="27501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATG</genome_strand>
        <mrna_strand>GAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATAGGTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTGTATGCTACCTAATGCATGCCACTTCCTGATGCTTTCATGACGAAGTCATTGTCAAGGGAGGCATGGAGTTAGGAATCAAAATTTATGGGATATATTGCTGTGGCTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266623" ref_strand="+" ref_description="SGN-E266623 [cLEI-5-K23]">
      <seq>aaaacataaaagatcaagaggaggaataatggcttgcatatttgctgagaaatgggaggaacttactggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28189" stop="27201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27889" g_stop="27501" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266623" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27889" e_stop="27501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATG</genome_strand>
        <mrna_strand>AAAACATAAAAGATCAAGAGGAGGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTACTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265040" ref_strand="+" ref_description="SGN-E265040 [cLEI-2-C12]">
      <seq>gagaaatgggaggaacttattggaaaaaacaatggggatgggctattaaaccccttggatcttgatcttcgtaaatacataattcattacggagaattggctcaagcaacttatgacactttcatttcaaagagagcatttaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtatggtgtaaccaaatatgactatgctacctaatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggataatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28143" stop="27214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27843" g_stop="27514" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265040" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27843" e_stop="27514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGAT-ATATTGCT</genome_strand>
        <mrna_strand>GAGAAATGGGAGGAACTTATTGGAAAAAACAATGGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATAATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAAAGAGAGCATTTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATGGTGTAACCAAATATGACTATGCTACCTAATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATAATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265015" ref_strand="+" ref_description="SGN-E265015 [cLEI-2-E7]">
      <seq>aaaaacataatagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacatttgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggtgaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcaaatactctatggaaaacttttttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttactgatgctttcataacgaaatcattgtcaagggaagcatggagcaaggaatcaaattttatgggatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28190" stop="27218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27890" g_stop="27518" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E265015" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27890" e_stop="27518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATAT</genome_strand>
        <mrna_strand>AAAAACATAATAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACATTTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGTGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAAATACTCTATGGAAAACTTTTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTACTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGCAAGGAATCAAATTTTATGGGATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267363" ref_strand="+" ref_description="SGN-E267363 [cLEI-17-O17]">
      <seq>gagtgaaaaaaacataaaagatcaagaaaaagaataatggcttgcatatttgctgagaaatgggaggaacttagtggaaaaaacaattgggatgggctattaaaccccttggatcttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcatttcagagagagcatctaaatatgcaggagctagcagatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttctatgctacctcatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28197" stop="27219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27519" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATA</genome_strand>
        <mrna_strand>GAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266962" ref_strand="+" ref_description="SGN-E266962 [cLEI-7-L17]">
      <seq>ataaaagatcaagaaaaagaataatggcttgcatatttgctgaaaaatgggaggaacttattggaaaaaacaattggcatgggctattaaaccccttggatcttgatctgtctgaaatacatcattcattacggagaattggctcaagcaccttatgacactttcatttcacagagagcatctaaatatgcaggagctagcatatactctatggaaaacttctttactaaggttggacttgacccaaaaaagtattgtgtaaccaaatatttgtatgctacctgatccatgccacttcctgatgctttcataacgaaatcattgtcaagggaagcatggagtaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="28184" stop="27238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27884" g_stop="27538" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E266962" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27884" e_stop="27538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCT-TCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAA</genome_strand>
        <mrna_strand>ATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAAAAATGGGAGGAACTTATTGGAAAAAACAATTGGCATGGGCTATTAAACCCCTTGGATCTTGATCTGTCTGAAATACATCATTCATTACGGAGAATTGGCTCAAGCACCTTATGACACTTTCATTTCACAGAGAGCATCTAAATATGCAGGAGCTAGCATATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTGTATGCTACCTGATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544833" ref_strand="+" ref_description="SGN-E544833 [TUS-67-F23](-)">
      <seq>gttgggcaggagctaatgattgacaccacaaaatctccctatgtgaagcctccaggagaacctgtgagctggcatttgctggagccctacttgcatggagtcgctggaactcaaggtttaggacttttagcaggttttaaactagaggtgaatcgcgatatttcacttgtcaacaagcagtgggacgtattgaaagatgaatattgcattcctgggctttggtgggttgagaaaaacaaaggaatggttcaacaagaagatggatcttggcttatgttggatcgcgatgagtatgacttctgagggagctacctacacttttaaaaagtgatcattttatttacttttaagaaatgtttgaataaaagttttttttttttttaatgtatgagttatgtatctctagttgattaggcatggcttacctatgcagtgtgtactcaaatttattatatgcatgaaataatatattgaatgtttttgtttgcttataagctaaaaaaaaaaaaaaaaggaaaannnaactcgaggggggcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="43235" stop="29078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42935" g_stop="42435" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42434" i_stop="40833" i_length="1602">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.45"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40832" g_stop="40793" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="540" r_length="39" r_score="0.450"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E544833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42935" e_stop="42435"/>
          <exon e_start="40832" e_stop="40793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTGCTGGAGCCCTACTTGCATGGAGTCGCTGGAACTCAAGGTTTAGGACTTTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTCAACAAGCAGTGGGACGTATTGAAAGATGAATATTGCATTCCTGGGCTTTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTATGTTGGATCGCGATGAGTATGACTTCTGAGGGAGCTACCTACACTTTTAAAAAGTGATCATTTTATTTACTTTTAAGAAATGTTTGAATAAAAGTTTTTTTTTTTTTTAATGTATGAGTTATGTATCTCTAGTTGATTAGGCATGGCTTACCTATGCAGTGTGTACTCAAATTTATTATATGCATGAAATAATATATTGAATGTTTTTGTTTGCTTATAAGCTAAAAATTTGCTTTTGATTTCATGAATCTCTCTTGATTAATAGTGTAATTAATTAGTAGTAATTGATCACAAAGCATCAGAAAGTTGATTGTGAGTCCGTTTGGATATGCTTAAAAAAAGTAATTTTTAAAAAATACTTTTGAAAGTGGTGAAACTTATTTTTAAAATAAGTAGATATGCGTTTGGATAAAAGTGTTTCAACTGAAAAAAAATTGTTGATGTGTTTAGCAAATAAGTGATGATAAACACTTTTTTTTATCAAAATGTTTGAAATACCATTAAAACTGTTAACATGATAAAAAGTTGATTAATTTAAGATTTTTATACTTAAAAAATTAAAACAAAATTAATTTATATTTTACATCCATAAGTAATAATATTTTGTATCATTCACATATTTCTTTGTCATCACAAATTTTTTATAATAATAATAATAATAATAATAAAAATAAAAGTATAAATAAAACTAAAAATAATAATAATGATAATAATAATAAAAAAATAATAAGAAAAATAATAATAATAATAATTTTTTACAAAAAATAAAGGCAAAAAGGTAATATACTTAATCACATAAAATGATTTTTAAGTTGAAAAAAAAAACACTCTCACCTAGCTTTTAGCTTTTGACTTAAATAAGTTATTTTTTACTTAAAATAACCATTTTGATAATTGTCAAACACTCTAATAAGTCAAAAACTGACTTTTAAATCAGTTTGATAAGCTTTTAAGCTCATCCAAACAGGCTCTGTGACTTTAAATTTAATTTCTTGCGATTTTAATGACTTGTGTCAATTAAGCGATTTTGATGGTTTATGAGAGAGTTAGGATATGCTTATTAGTAAGATGGTATAAGACTTGTAAAAGTTTTGATAATTTTCACAAATTACAAAAAAAAAAATGTTTGGTTATAAAGAAATTATAATTTTGTAAAATTTAATTACATGTCCTAACGAATTAAATTCCAACTTTAGATAAACTCTTACACAATTTAAAGATTTCATATTCACAACCAAATGCTTACTGATTAAGTCATGAAAAAAATGAAAAATTAAAGAACATAACATAAAGAATATGTCAAGGAATATTAAAGAGTTTCTTTACTTAAACATTTAAAAGTGGGTTTGTTTTCGGGGAAAAAAACTCTCACCTTATGTTTTTCTTATAAAAAACTTCTTTTATAAAAATCAAATTGAAGAAATTAAATAGCAATTTTTTTATTTGGTTTTGGTATATAATTTCAAAATTGATATAATTTAATTTGATTTTTATAGCAAATAACATTCTTTCAATTTAAATTATTTTTTATAATTTATCTGAGTAACTAATAAAAGTATTGATATTATGAATATATATAAAAATATATTTAACAATGAATTGTTATAAAATCAAACTCATAAGAAGAAGGCAAGAGAAGTAGATAGAAGAATAAAAATATTGGTATTTGTATATTTAATCTTTATCTCGCTTTACACATACAAATTATAAAGCGAAAGAGAAAAACAAAATATAAATAAACATATGAAAATTTGTATTTGTTTAATTATAAGTGAATATGATGAAAAAAATATTAAAATGTATTTGTATAATTTTTGTTTTGTAAAAAGTGAGAGAGAGATTGACAAAAGATAAGCAAGAGAGACTTGG</genome_strand>
        <mrna_strand>GTTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTGCTGGAGCCCTACTTGCATGGAGTCGCTGGAACTCAAGGTTTAGGACTTTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTCAACAAGCAGTGGGACGTATTGAAAGATGAATATTGCATTCCTGGGCTTTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTATGTTGGATCGCGATGAGTATGACTTCTGAGGGAGCTACCTACACTTTTAAAAAGTGATCATTTTATTTACTTTTAAGAAATGTTTGAATAAAAGTTTTTTTTTTTTTTAATGTATGAGTTATGTATCTCTAGTTGATTAGGCATGGCTTACCTATGCAGTGTGTACTCAAATTTATTATATGCATGAAATAATATATTGAATGTTTTTGTTTGCTTATAAGCTAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAGGA-AAANNNAACTCGAGGGGGGCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544834" ref_strand="-" ref_description="SGN-E544834 [TUS-67-F23]">
      <seq>ttttttttttttttttttttagcttataagcaaacaaaaacattcaatatattatttcatgcatataataaatttgagtacacactgcataggtaagccatgcctaatcaactagagatacataactcatacattaaaaaaaaaaaaaacttttattcaaacatttcttaaaagtaaataaaatgatcactttttaaaagtgtaggtagctccctcagaagtcatactcatcgcgatccaacataagccaagatccatcttcttgttgaaccattcctttgtttttctcaacccaccaaagcccaggaatgcaatattcatctttcaatacgtcccactgcttgttgacaagtgaaatatcgcgattcacctctagtttaaaacctgctaaaagtcctaaaccttgagttccagcgactccatgcaagtagggctccagcaaatgccagctcacaggttctcctggaggcttcacatagggagattttgtggtgtcaatcattagctcctgcccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="+" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="29078" stop="43235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40802" g_stop="40816" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40817" i_stop="42433" i_length="1617">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42434" g_stop="42935" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="517" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="+" ref_id="SGN-E544834" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544834" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40802" e_stop="40816"/>
          <exon e_start="42434" e_stop="42935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCTTATCTTTTGTCAATCTCTCTCTCACTTTTTACAAAACAAAAATTATACAAATACATTTTAATATTTTTTTCATCATATTCACTTATAATTAAACAAATACAAATTTTCATATGTTTATTTATATTTTGTTTTTCTCTTTCGCTTTATAATTTGTATGTGTAAAGCGAGATAAAGATTAAATATACAAATACCAATATTTTTATTCTTCTATCTACTTCTCTTGCCTTCTTCTTATGAGTTTGATTTTATAACAATTCATTGTTAAATATATTTTTATATATATTCATAATATCAATACTTTTATTAGTTACTCAGATAAATTATAAAAAATAATTTAAATTGAAAGAATGTTATTTGCTATAAAAATCAAATTAAATTATATCAATTTTGAAATTATATACCAAAACCAAATAAAAAAATTGCTATTTAATTTCTTCAATTTGATTTTTATAAAAGAAGTTTTTTATAAGAAAAACATAAGGTGAGAGTTTTTTTCCCCGAAAACAAACCCACTTTTAAATGTTTAAGTAAAGAAACTCTTTAATATTCCTTGACATATTCTTTATGTTATGTTCTTTAATTTTTCATTTTTTTCATGACTTAATCAGTAAGCATTTGGTTGTGAATATGAAATCTTTAAATTGTGTAAGAGTTTATCTAAAGTTGGAATTTAATTCGTTAGGACATGTAATTAAATTTTACAAAATTATAATTTCTTTATAACCAAACATTTTTTTTTTTGTAATTTGTGAAAATTATCAAAACTTTTACAAGTCTTATACCATCTTACTAATAAGCATATCCTAACTCTCTCATAAACCATCAAAATCGCTTAATTGACACAAGTCATTAAAATCGCAAGAAATTAAATTTAAAGTCACAGAGCCTGTTTGGATGAGCTTAAAAGCTTATCAAACTGATTTAAAAGTCAGTTTTTGACTTATTAGAGTGTTTGACAATTATCAAAATGGTTATTTTAAGTAAAAAATAACTTATTTAAGTCAAAAGCTAAAAGCTAGGTGAGAGTGTTTTTTTTTTCAACTTAAAAATCATTTTATGTGATTAAGTATATTACCTTTTTGCCTTTATTTTTTGTAAAAAATTATTATTATTATTATTTTTCTTATTATTTTTTTATTATTATTATCATTATTATTATTTTTAGTTTTATTTATACTTTTATTTTTATTATTATTATTATTATTATTATAAAAAATTTGTGATGACAAAGAAATATGTGAATGATACAAAATATTATTACTTATGGATGTAAAATATAAATTAATTTTGTTTTAATTTTTTAAGTATAAAAATCTTAAATTAATCAACTTTTTATCATGTTAACAGTTTTAATGGTATTTCAAACATTTTGATAAAAAAAAGTGTTTATCATCACTTATTTGCTAAACACATCAACAATTTTTTTTCAGTTGAAACACTTTTATCCAAACGCATATCTACTTATTTTAAAAATAAGTTTCACCACTTTCAAAAGTATTTTTTAAAAATTACTTTTTTTAAGCATATCCAAACGGACTCACAATCAACTTTCTGATGCTTTGTGATCAATTACTACTAATTAATTACACTATTAATCAAGAGAGATTCATGAAATCAAAAGCAAATTTTTAGCTTATAAGCAAACAAAAACATTCAATATATTATTTCATGCATATAATAAATTTGAGTACACACTGCATAGGTAAGCCATGCCTAATCAACTAGAGATACATAACTCATACATTAAAAAAAAAAAAAACTTTTATTCAAACATTTCTTAAAAGTAAATAAAATGATCACTTTTTAAAAGTGTAGGTAGCTCCCTCAGAAGTCATACTCATCGCGATCCAACATAAGCCAAGATCCATCTTCTTGTTGAACCATTCCTTTGTTTTTCTCAACCCACCAAAGCCCAGGAATGCAATATTCATCTTTCAATACGTCCCACTGCTTGTTGACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAAAAGTCCTAAACCTTGAGTTCCAGCGACTCCATGCAAGTAGGGCTCCAGCAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATAGGGAGATTTTGTGGTGTCAATCATTAGCTCCTGCCCAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCTTATAAGCAAACAAAAACATTCAATATATTATTTCATGCATATAATAAATTTGAGTACACACTGCATAGGTAAGCCATGCCTAATCAACTAGAGATACATAACTCATACATTAAAAAAAAAAAAAACTTTTATTCAAACATTTCTTAAAAGTAAATAAAATGATCACTTTTTAAAAGTGTAGGTAGCTCCCTCAGAAGTCATACTCATCGCGATCCAACATAAGCCAAGATCCATCTTCTTGTTGAACCATTCCTTTGTTTTTCTCAACCCACCAAAGCCCAGGAATGCAATATTCATCTTTCAATACGTCCCACTGCTTGTTGACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAAAAGTCCTAAACCTTGAGTTCCAGCGACTCCATGCAAGTAGGGCTCCAGCAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATAGGGAGATTTTGTGGTGTCAATCATTAGCTCCTGCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308582" ref_strand="+" ref_description="SGN-E308582 [cLEY-21-E10]">
      <seq>ttgggcaggagctaatgattgacaccacaaaatctccctatgtgaagcctccaggagaacctgtgagctggcatttgctggagccctacttgcatggagtcgctggaactcaaggtttaggacttttagcaggttttaaactagaggtgaatcgcgatatttcacttgtcaacaagcagtgggacgtattgaaagatgaatattgcattcctgggctttggtgggttgagaaaaacaaaggaatggttcaacaagaagatggatcttggcttatgttggatcgcgatgagtatgacttctgagggagctacctacacttttaaaaagtgatcattttatttacttttaagaaatgtttgaataaaagttttttttttttttaatgtatgagttatgtatctctagttgattaggcatggcttacctatgcagtgtgtactcaaatttattatatgcatgaaataatatattgaatgtttttgtttgcttataagctaaannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="43234" stop="42136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42934" g_stop="42435" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="516"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E308582" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42934" e_stop="42435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTGCTGGAGCCCTACTTGCATGGAGTCGCTGGAACTCAAGGTTTAGGACTTTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTCAACAAGCAGTGGGACGTATTGAAAGATGAATATTGCATTCCTGGGCTTTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTATGTTGGATCGCGATGAGTATGACTTCTGAGGGAGCTACCTACACTTTTAAAAAGTGATCATTTTATTTACTTTTAAGAAATGTTTGAATAAAAGTTTTTTTTTTTTTTAATGTATGAGTTATGTATCTCTAGTTGATTAGGCATGGCTTACCTATGCAGTGTGTACTCAAATTTATTATATGCATGAAATAATATATTGAATGTTTTTGTTTGCTTATAAGCTAAAA</genome_strand>
        <mrna_strand>TTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTGCTGGAGCCCTACTTGCATGGAGTCGCTGGAACTCAAGGTTTAGGACTTTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTCAACAAGCAGTGGGACGTATTGAAAGATGAATATTGCATTCCTGGGCTTTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTATGTTGGATCGCGATGAGTATGACTTCTGAGGGAGCTACCTACACTTTTAAAAAGTGATCATTTTATTTACTTTTAAGAAATGTTTGAATAAAAGTTTTTTTTTTTTTTAATGTATGAGTTATGTATCTCTAGTTGATTAGGCATGGCTTACCTATGCAGTGTGTACTCAAATTTATTATATGCATGAAATAATATATTGAATGTTTTTGTTTGCTTATAAGCTAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304406" ref_strand="+" ref_description="SGN-E304406 [cLEX-12-E15]">
      <seq>tctaaatatgcaggtgctagcagatactcaatggaaaatctttttactaaggtcggacttgacccaaacaagtatcgtgtgaccaaatttttctatgctactgcatccattccacttcctgatggtttcatcgtgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagtttcactaggaagaagggatattgtgattgcttggagaggaactatgcagaagctggagtgggttaatgatcttcaatttttacttgtgccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcaacctttggtgcatcatggcttttacaatgcttatacatcatcgagttcacgatcacagtttaatctgactagtgccagagatcaggtaattgaagaagtgaaaagattggtggaggaatataagcatgaagaggtgagtataactgtgactggacacagcctaggtgcatcacttgcaactctaaatgcagttgacatagctttcaatggaatcaataaaacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="44049" stop="42798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43749" g_stop="43315" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43314" i_stop="43239" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43238" g_stop="43098" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="576" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E304406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43749" e_stop="43315"/>
          <exon e_start="43238" e_stop="43098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACGATCACAGTTTAATCTGACTAGTGCCAGAGATCAGGTACGTACATGTTAATTTTCTATTCGATTTGATATATCGGAACAATTCATCATTATTTCTTCCTTTTAATTATCAGGTAATTGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGCATGAAGAGGTGAGTATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATGGAATCAATAAAACAAGT</genome_strand>
        <mrna_strand>TCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACGATCACAGTTTAATCTGACTAGTGCCAGAGATCAG............................................................................GTAATTGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGCATGAAGAGGTGAGTATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATGGAATCAATAAAACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268394" ref_strand="+" ref_description="SGN-E268394 [cLEI-13-B13]">
      <seq>gaaaatctttttactaaggtcggacttgacccaaacaagtatcgtgtgaccaaatttttctatgctactgcatccattccacttcctgatggtttcatcgtgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagtttcactaggaagaagggatattgtgattgcttggagaggaactatgcagaagctggagtgggttaatgatcttcaatttttacttgtgccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcaacctttggtgcatcatggcttttacaatgcttatacatcatcgagttcacgatcacagtttaatctgactagtgccagagatcaggtaattgaagaagtgaaaagattggtggaggaatataagcatgaagaggtgagtataactgtgactggacacagcctangtgcatcacttgcaactctaaatgcagttgacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="44016" stop="42825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43716" g_stop="43315" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43314" i_stop="43239" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43238" g_stop="43125" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="516" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E268394" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43716" e_stop="43315"/>
          <exon e_start="43238" e_stop="43125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACGATCACAGTTTAATCTGACTAGTGCCAGAGATCAGGTACGTACATGTTAATTTTCTATTCGATTTGATATATCGGAACAATTCATCATTATTTCTTCCTTTTAATTATCAGGTAATTGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGCATGAAGAGGTGAGTATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATA</genome_strand>
        <mrna_strand>GAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACGATCACAGTTTAATCTGACTAGTGCCAGAGATCAG............................................................................GTAATTGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGCATGAAGAGGTGAGTATAACTGTGACTGGACACAGCCTANGTGCATCACTTGCAACTCTAAATGCAGTTGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311671" ref_strand="+" ref_description="SGN-E311671 [cLEZ-9-L17]">
      <seq>tggctgagaaatgggaggaacttagtggtaaaaacaattgggaaggtctattacaccccttggatgttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcattacagaaagagcgtctaaatatgcaggtgctagcagatactcaatggaaaatctttttactaaggtcggacttgacccaaacaagtatcgtgtgaccaaatttttctatgctactgcatccattccacttcctgatggtttcatcgtgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagtttcactaggaagaagggatattgtgattgcttggagaggaactatgcagaagctggagtgggttaatgatcttcaatttttacttgtgccagcaccccaagtatttggtgatggaggtttgcttcctttgtttcaacctttggtgcatcatggcttttacaatgcttatacatcatcgagttcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="44192" stop="43049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43892" g_stop="43349" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E311671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43892" e_stop="43349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACG</genome_strand>
        <mrna_strand>TGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214491" ref_strand="+" ref_description="SGN-E214491 [cLEC-77-H12]">
      <seq>gaaaagagaggagtaatatggctgagaaatgggaggaacttagtggtaaaaacaattgggaaggtctattacaccccttggatgttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcattacagaaagagcgtctaaatatgcaggtgctagcagatactcaatggaaaatctttttactaaggtcggacttgacccaaacaagtatcgtgtgaccaaatttttctatgctactgcatccattccacttcctgatggtttcatcgtgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagtttcactangaagaagggatattgtgattgcttggagaggaactatgcagaagctggagtgggttaatgatcttcaatttttacttgtgccagcaccccaagtatttggtgatggaaggttgcttcctttgtttcacctttggtgcatcatggcttttacaatgcttatacatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="44210" stop="43059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43910" g_stop="43359" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E214491" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43910" e_stop="43359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGAGGAGTAATATGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCAT</genome_strand>
        <mrna_strand>GAAAAGAGAGGAGTAATATGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTANGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAAGGTTGCTTCCTTTGTTTC-ACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297066" ref_strand="+" ref_description="SGN-E297066 [cLEW-2-A23]">
      <seq>ataaatgggaggaacttagtggttaaaacaattgggaaggtctattacaccccttggatgttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactctcattacagaacgagcgtctaaatatgcacgtgctagcaaatactcaatggaaaatctttttactaaggtcggacttgacccaaacaagtatcgtgtgaccaaatttttctatgctactgcatccattccacttcctgatgggttcatcgagaaatcattgtcaagggaagcctggagtaaggaatcacattttatgggatatattgctgtggctactgatgaaggtgaagttccactaggaagaagggatattgtgattgcttggagaggaactatgcagaagctggagtgggctaatgatcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="44186" stop="43158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43458" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E297066" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAAT</genome_strand>
        <mrna_strand>ATAAATGGGAGGAACTTAGTGGTTAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTCTCATTACAGAACGAGCGTCTAAATATGCACGTGCTAGCAAATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGGTTCATCGAGAAATCATTGTCAAGGGAAGCCTGGAGTAAGGAATCACATTTTATGGGATATATTGCTGTGGCTACTGATGAAGGTGAAGTTCCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGCTAATGATCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267389" ref_strand="+" ref_description="SGN-E267389 [cLEI-8-I3]">
      <seq>agagaggagtaatatggctgagaaatgggaggaacttagtggtaaaaacaattgggaaggtctattacaccccttggatgttgatcttcgtaaatacatcattcattacggagaattggctcaagcaacttatgacactttcattacagaaagagcgtctaaatatgcaggtgctagcagatactcaatggaaaatctttttactaaggtcggacttgacccaaacaagtatcgtgtgaccaaatttttctatgctactgcatccattccacttcctgatggtttcatcgtgaaatcattgtcaagggaagcatggagtaaggaatcaaattttatgggatatattgctgtggctactgatgagggtaaagtttcactaggaagaagggatattgtgattgcttggagaggaactatgcagaagctggagtgggttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="44206" stop="43167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43906" g_stop="43467" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E267389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43906" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGAGTAATATGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATG</genome_strand>
        <mrna_strand>AGAGAGGAGTAATATGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545464" ref_strand="+" ref_description="SGN-E545464 [TUS-68-F6](-)">
      <seq>gttcaagatcacagtttaatgtgactagtgccagagatcaggtaatggaagaagtgaaaagattggttgaggaatataagaatgaagaggtgagcataactgtgacgggacacagcctgggtgcatcacttgcaactctgaatgcagttgacatagctttcaataaaatcaacaaagcaagtaatggcaaagagttcccagtcactgcttttccattcgcatgtcctaaagttggagatctccaatttaaggcagcatttgacaaaataatagggcttcgtatcttgagaattgataacttattggatattgctccgaaatacccacctattggatactttgacgttgggcaggagctaatgattgacaccacaaaatctccctatgtgaaacctccaggacaacctgtgaactggcattcgctggagtcatacttgcatggaatcgctggaactcaaggtacggggcttttagcgggttttaatttagaggtgaatcgtgatatctcacttatcaacaagcagttggacggattgaaagatgaatattgcattcctgtgaattggtgggttgagaaaaacaaaggaatggttcaacaagaagatggatcttggcttctcttggatcgcgatgattatgacttctgatggagctaccaacacttttaaaaaaactatcattttatttcctttcatcaaatgttttttttattattattattgttttatgtatgactgatgtatctctagttgattgggcatggctttcctatgntaatttatatgcatgtgtaataaaatattgaatgtttttgtttgcttacaagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="49270" stop="47761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48970" g_stop="48930" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48929" i_stop="48851" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48850" g_stop="48062" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="831" r_length="790" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E545464" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48970" e_stop="48930"/>
          <exon e_start="48850" e_stop="48062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGATCACAGTTTAATGTGACTAGTGCCAGAGATCAGGTACTACATGTACTTTTATTTATTAGTCGGAAAAAAGGCTAAAGATATATTAAAATAATTCATCATATATATTTTTTAGGTAATGGAAGAAGTGAAAAGATTGGTTGAGGAATATAAGAATGAAGAGGTGAGCATAACTGTGACGGGACACAGCCTGGGTGCATCACTTGCAACTCTGAATGCAGTTGACATAGCTTTCAATAAAATCAACAAAGCAAGTAATGGCAAAGAGTTCCCAGTCACTGCTTTTCCATTCGCATGTCCTAAAGTTGGAGATCTCCAATTTAAGGCAGCATTTGACAAAATAATAGGGCTTCGTATCTTGAGAATTGATAACTTATTGGATATTGCTCCGAAATACCCACCTATTGGATACTTTGACGTTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAACCTCCAGGACAACCTGTGAACTGGCATTCGCTGGAGTCATACTTGCATGGAATCGCTGGAACTCAAGGTACGGGGCTTTTAGCGGGTTTTAATTTAGAGGTGAATCGTGATATCTCACTTATCAACAAGCAGTTGGACGGATTGAAAGATGAATATTGCATTCCTGTGAATTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTCTCTTGGATCGCGATGATTATGACTTCTGATGGAGCTACCAACACTTTTAAAAAAACTATCATTTTATTTCCTTTCATCAAATGTTTTTTTTATTATTATTATTGTTTTATGTATGACTGATGTATCTCTAGTTGATTGGGCATGGCTTTCCTATG-TAATTTATATGCATGTGTAATAAAATATTGAATGTTTTTGTTTGCTTACAAGCTAAA</genome_strand>
        <mrna_strand>GTTCAAGATCACAGTTTAATGTGACTAGTGCCAGAGATCAG...............................................................................GTAATGGAAGAAGTGAAAAGATTGGTTGAGGAATATAAGAATGAAGAGGTGAGCATAACTGTGACGGGACACAGCCTGGGTGCATCACTTGCAACTCTGAATGCAGTTGACATAGCTTTCAATAAAATCAACAAAGCAAGTAATGGCAAAGAGTTCCCAGTCACTGCTTTTCCATTCGCATGTCCTAAAGTTGGAGATCTCCAATTTAAGGCAGCATTTGACAAAATAATAGGGCTTCGTATCTTGAGAATTGATAACTTATTGGATATTGCTCCGAAATACCCACCTATTGGATACTTTGACGTTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAACCTCCAGGACAACCTGTGAACTGGCATTCGCTGGAGTCATACTTGCATGGAATCGCTGGAACTCAAGGTACGGGGCTTTTAGCGGGTTTTAATTTAGAGGTGAATCGTGATATCTCACTTATCAACAAGCAGTTGGACGGATTGAAAGATGAATATTGCATTCCTGTGAATTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTCTCTTGGATCGCGATGATTATGACTTCTGATGGAGCTACCAACACTTTTAAAAAAACTATCATTTTATTTCCTTTCATCAAATGTTTTTTTTATTATTATTATTGTTTTATGTATGACTGATGTATCTCTAGTTGATTGGGCATGGCTTTCCTATGNTAATTTATATGCATGTGTAATAAAATATTGAATGTTTTTGTTTGCTTACAAGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310764" ref_strand="+" ref_description="SGN-E310764 [cLEZ-15-J23]">
      <seq>ttaaaccccttggatcttgatcttcgtaaatatatcattcaatacggagaattggctcaagcaatcaatgacactttcattacagaaaaagcgtctaaatatgcaggagctagcagatactctatggaaaacctttttactaaagttggacttgacccaaccaagtatcgtgtaaccaaatatttctatgctactgcatccattccacttcctgatggtgttttcttcgtgaaatcattgtcaagagaagcatggagtaaggaatcaaattttatgggatatattgctgtagctactgatgagggtaaagtttcactaggaagaagggatattgttattaattggagaggaagtatgcaaacattggagtgggtgaatgaccttcaatttgtacttgttccagcaccagaagtatttggtgatggaggcttgcttcaacctttggtgcatcagggcttctataatgtctatacagcatccagttcaagatcacagtttaatgtgactagtgccagagatcaggttatggaagaagtgaaaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="49751" stop="26865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49451" g_stop="48930" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48929" i_stop="48851" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48850" g_stop="48827" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="546" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E310764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49451" e_stop="48930"/>
          <exon e_start="48850" e_stop="48827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCCTTGGATCTTGATCTTCGTAAATATATCATTCAATACGGAGAATTGGCTCAAGCAATCAATGACACTTTCATTACAGAAAAAGCGTCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACCTTTTTACTAAAGTTGGACTTGACCCAACCAAGTATCGTGTAACCAAATATTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTGTTTTCTTCGTGAAATCATTGTCAAGAGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTAGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTTATTAATTGGAGAGGAAGTATGCAAACATTGGAGTGGGTGAATGACCTTCAATTTGTACTTGTTCCAGCACCAGAAGTATTTGGTGATGGAGGCTTGCTTCAACCTTTGGTGCATCAGGGCTTCTATAATGTCTATACAGCATCCAGTTCAAGATCACAGTTTAATGTGACTAGTGCCAGAGATCAGGTACTACATGTACTTTTATTTATTAGTCGGAAAAAAGGCTAAAGATATATTAAAATAATTCATCATATATATTTTTTAGGTAATGGAAGAAGTGAAAAGATTG</genome_strand>
        <mrna_strand>TTAAACCCCTTGGATCTTGATCTTCGTAAATATATCATTCAATACGGAGAATTGGCTCAAGCAATCAATGACACTTTCATTACAGAAAAAGCGTCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACCTTTTTACTAAAGTTGGACTTGACCCAACCAAGTATCGTGTAACCAAATATTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTGTTTTCTTCGTGAAATCATTGTCAAGAGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTAGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTTATTAATTGGAGAGGAAGTATGCAAACATTGGAGTGGGTGAATGACCTTCAATTTGTACTTGTTCCAGCACCAGAAGTATTTGGTGATGGAGGCTTGCTTCAACCTTTGGTGCATCAGGGCTTCTATAATGTCTATACAGCATCCAGTTCAAGATCACAGTTTAATGTGACTAGTGCCAGAGATCAG...............................................................................GTTATGGAAGAAGTGAAAAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549211" ref_strand="+" ref_description="SGN-E549211 [TUS-68-F6]">
      <seq>attaaaccccttggatcttgatcttcgtaaatatatcattcaatacggagaattggctcaagcaatcaatgacactttcattacagaaaaagcgtctaaatatgcaggagctagcagatactctatggaaaacctttttactaaagttggacttgacccaaccaagtatcgtgtaaccaaatatttctatgctactgcatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="49752" stop="48950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49452" g_stop="49250" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E549211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49452" e_stop="49250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAACCCCTTGGATCTTGATCTTCGTAAATATATCATTCAATACGGAGAATTGGCTCAAGCAATCAATGACACTTTCATTACAGAAAAAGCGTCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACCTTTTTACTAAAGTTGGACTTGACCCAACCAAGTATCGTGTAACCAAATATTTCTATGCTACTGCATCCA</genome_strand>
        <mrna_strand>ATTAAACCCCTTGGATCTTGATCTTCGTAAATATATCATTCAATACGGAGAATTGGCTCAAGCAATCAATGACACTTTCATTACAGAAAAAGCGTCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACCTTTTTACTAAAGTTGGACTTGACCCAACCAAGTATCGTGTAACCAAATATTTCTATGCTACTGCATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="+" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="53151" stop="54045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53451" g_stop="53771" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53451" e_stop="53771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAACATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAG-A-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="+" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="53151" stop="54041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53451" g_stop="53756" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53451" e_stop="53756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAACATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGATTATACACTTCTGTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349469" ref_strand="+" ref_description="SGN-E349469 [cTOS-1-A5]">
      <seq>tcgattgcaccaccaacaattatggctgcaacggaggttttatgacgaatgcattcgattttatcatagaaaatggtggaatttcaagggaatcagattatgaatacctaggtcaacagtacacatgcagaagccaagagaaaacagcagcagtgcaaataagtagttatcaagtcgtgcctgaaggtgaaacatcactattacaagccgtaactaaacagccagtgtccattggaatagctgctagccaagatttacagttttacgcgggaggaacttatgacggaaactgtgccgatcgaattaaccatgctgtaacagcgataggatatggaactgatgaggaaggtcagaaatattggttgttgaagaattcatggggaacaagttggggtgagaatgggtatatgaaaattataagagattctggggatccttcaggtctttgtgatatcgcaaagatgtcttcttatccaaacatagcgtagcatagataagcaagcatttcttatatgttgttgtattattaagaattgaggggaaaaaatattgattgtgtacatgcaaaagctttttgcatgaagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="55914" stop="54729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55614" g_stop="55026" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E349469" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55614" e_stop="55026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTGATATCGCAAAGATGTCTTCTTATCCAAACATAGCGTAGCATAGATAAGCAAGCATTTCTTATATGTTGTTGTATTATTAAGAATTGAGGGGAAAAAATATTGATTGTGTACATGCAAAAGCTTTTTGCATGAAGTATTT</genome_strand>
        <mrna_strand>TCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTGATATCGCAAAGATGTCTTCTTATCCAAACATAGCGTAGCATAGATAAGCAAGCATTTCTTATATGTTGTTGTATTATTAAGAATTGAGGGGAAAAAATATTGATTGTGTACATGCAAAAGCTTTTTGCATGAAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356607" ref_strand="+" ref_description="SGN-E356607 [cTOS-21-J21]">
      <seq>gaatttgcagatattacttcacaagagtttttggctaaatttactggattaaacatacctaattcatatctttcaccttctccaatgtcatcaacggaatttaaaaaaattaatgatcttagcgatgattacatgccgtctaacttggactggagagagtctggggctgtcactcaagtgaaacatcaaggtcgatgtggatgttgctgggcgttttctgcagttggatcactagaaggagcctacaaaattgcaacaggcaacttgatggaattctctgaacaggaacttctcgattgcaccaccaacaattatggctgcaacggaggttttatgacgaatgcattcgattttatcatagaaaatggtggaatttcaagggaatcagattatgaatacctaggtcaacagtacacatgcagaagccaagagaaaacagcagcagtgcaaataagtagttatcaagtcgtgcctgaaggtgaaacatcactattacaagccgtaactaaacagccagtgtccattggaatagctgctagccaagatttacagttttacgcgggaggaacttatgacggaaactgtgccgatcgaattaaccatgctgtaacagcgataggatatggaactgatgaggaaggtcagaaatattggttgttgaagaattcatggggaacaagttggggtgagaatgggtatatgaaaattataagagattctggggatccttcaggtctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="56280" stop="54865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55980" g_stop="55782" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55781" i_stop="55708" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55707" g_stop="55165" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="742" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E356607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55980" e_stop="55782"/>
          <exon e_start="55707" e_stop="55165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGCAGATATTACTTCACAAGAGTTTTTGGCTAAATTTACTGGATTAAACATACCTAATTCATATCTTTCACCTTCTCCAATGTCATCAACGGAATTTAAAAAAATTAATGATCTTAGCGATGATTACATGCCGTCTAACTTGGACTGGAGAGAGTCTGGGGCTGTCACTCAAGTGAAACATCAAGGTCGATGTGGTAAGATAGAACACTGTCTCATGAAATATTATTCACTGATATTAATTAATTAGGTATTTTTTTTGTATTATTAGGATGTTGCTGGGCGTTTTCTGCAGTTGGATCACTAGAAGGAGCCTACAAAATTGCAACAGGCAACTTGATGGAATTCTCTGAACAGGAACTTCTCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTG</genome_strand>
        <mrna_strand>GAATTTGCAGATATTACTTCACAAGAGTTTTTGGCTAAATTTACTGGATTAAACATACCTAATTCATATCTTTCACCTTCTCCAATGTCATCAACGGAATTTAAAAAAATTAATGATCTTAGCGATGATTACATGCCGTCTAACTTGGACTGGAGAGAGTCTGGGGCTGTCACTCAAGTGAAACATCAAGGTCGATGTG..........................................................................GATGTTGCTGGGCGTTTTCTGCAGTTGGATCACTAGAAGGAGCCTACAAAATTGCAACAGGCAACTTGATGGAATTCTCTGAACAGGAACTTCTCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689261" ref_strand="+" ref_description="SGN-E689261 [t3_tus_80_M13]">
      <seq>ctcttntcttccntctgcccttctctggttttncttggagtgggggaaaccatctcttcacagtcttgtcccaaggtacttctgttgaatggtactcatgatcgagaaacttgtggccttagtgcttcttgctttgtgactgccattaccgatgccttaaatcgaacttatggagatcctcataattgtcttaaaaatcctccaaacaaatatatcaacacccttttggtgccgaaaaacggattaatacctatggataaagaaagcctggcttctcaaggaattttcaatgtggtcacggtggattcctttcctgatccaaaattgggtgtgctttttgatcccaaatcattgattcaagcactttccaatctgttgacggatgcatgaacctgaattctactatgatttgttaaaccttaatttatcagaaattttggagcttgtggcacagtagttttcgcaacggatctgaagagaaacgggctgtttgtgagaacttgtagatcgataacaattcaaagacctctgcattgatttcaactccatgaagtccgaaggaagagggtaaggcttccatagtttcacgttggcattggcttagatcttattcagctcttactgggaaagaatatcattgttcacaattgagctgaaacaaatctgatgtttcgtatttgggcacgtacagatcaatgaaattttttccaacctcagtttgtttggaattgaagcgtaatggctgttgtacataataaaatttcttttcatcattggccttattttataggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="64517" stop="61109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64217" g_stop="64191" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64190" i_stop="63904" i_length="287">
            <donor d_prob="0.794" d_score="0.00"/>
            <acceptor a_prob="0.150" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63903" g_stop="63856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="75" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63855" i_stop="63696" i_length="160">
            <donor d_prob="0.666" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63695" g_stop="63570" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="201" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63569" i_stop="62316" i_length="1254">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62315" g_stop="62223" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="294" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62222" i_stop="62004" i_length="219">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62003" g_stop="61830" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="468" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61829" i_stop="61741" i_length="89">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61740" g_stop="61415" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="794" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="818"/>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E689261" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64217" e_stop="64191"/>
          <exon e_start="63903" e_stop="63856"/>
          <exon e_start="63695" e_stop="63570"/>
          <exon e_start="62315" e_stop="62223"/>
          <exon e_start="62003" e_stop="61830"/>
          <exon e_start="61740" e_stop="61415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTACTTCCATCTGCCCTTCTCTGGTAGAGTAGCCTGCAACTTAAGTTCTTTCACATTAGTTCATAGATATGTTTAGCATATGCAAGTATCTAATTTTGTCGAGTCGATCCTGCTTGTGAGACAAACTAAAACAAGTAGGTTGAAGATATACCTAATATTGGCAAACTAATTTGTTTTCTTTTAATTGAGTTCATCTTCTCAAGCATGGCATTGTCATCACTCATCACTATTTTATTATCATTCTTCTTCTCATTTTTTTTTTGAAAAGAACGAAAATAAGTACTCAGTGGTTTTGCTGCTCCATTTGAAGGTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAGGTAATTTGGGCAATGCAAATAATTCCTGTATTGCTGCTTTCTCAGACAAATCGAGTTGTCTGAGTCAATGATTTCCTCGTCTCATTGATGTTTTTCTCATGTCAATGTTATTAATTTCTTCTTCTCCTTCCCCAACAATTCTTCTTCTTCTTAATCCCAGGTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCTGTAAGTAGCTAAGCATTTATGCGTTTCTTCTCAAATTGACTGATTGTTATGGATTTTCATTTGCCCACGGTGGGATTACACTGGGTATGTTGGTATGTATTTTCATTTAATTGGGGTTTTCACTCTCAGTCCTTATGTGCAGAACATGCATCCTGTTAGTTGAATATTTTTCTAATCATTGCCTAGATGTGTAACTTAAGGAAAGTGATGAGAAATTATGGACTACTCAATAGGTTCCCGAGTGTGATGTAGGCTCCTGAATCTAACCCAAAAGTTACTGAATAAAGCACACATAAAAGTCTCAATGTGTGGATGGATCGTCTGAAGCATTGACAATTGTTCATTCTCAAGCACTTCCACATCAGCAATATTCCAACTTATTTGTCAATTGTTCATTACTAAACTATAGCTGATGACAGATGCCTCAGTTAAATTTCACGGGAGCTCATATGATTTGCCATCCCATTTTTGTGATTACATGATCCGTACATTGAACGTCATGGAATTATGAGTTCCTTCCCCAAGAGATCAGTACTAATGCTGAAGCATTTATTATATGTGGTTTGCGTTGGTGTTTTGGTTCCAATCTTCTATAGTATCGTGTTTACTACATCTCATATCAGGCATCCTGGATAGGCTGGCAAAGTATGAGGGTGACAGTCAAAATTTTATTTTACTTAAATAGAAGTGTTTCTGAAAGTGGAGAGAATTAACTTGATGAAGAATTTAAACTCTCTTCATACATAAGTATTTTCCTACTGCATCTCATAAGCTAATTTTTGAGTCCTATAGTTCTGTAGATCGATGAAAAATGCTACTCCCTTTATCCCAATTGAATATACCAGATGCCATTCGGGTTTTTAAAATATGAGAATTGAAAAAGTCTGTTGTTTAGTATTAGCGGATGGAAAATCTTGGGGCACAGTTGCTTTTTGAATTGTGAAGAATAGAAAGAGAGATATGACAAAGAGGAAAAGTGGCGCAAGATTCCCCTCACACTACATATTAGGCTGTAAAGTTCTTCTTGAGAGTATAAATTATTTAATGGACAAACAATGGATATTCCCTAATATGTTGTAATTTGATCAAAATCATTAGGCTCTCATCACTGTAATTTTAATTTGCTTTTAGTTCATTTGGCAACTAGCTGAGTGTAACACACAACAGTAGATTTCACATACTTGCACAAACAACCTTGAATCATGTCATGAAAATTAAATTTTTTGTTTCTTCTGATGGAATTTTTCTTTTCAGCCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTGGTATGTTCCTGTTTCATGGTTATTAGAAATGCTTCTTGGTAAATCAATAATGTACTTGATCAGTTTCTATTGGTCATGAGATTTGTCGTTCTGATTTGAAAAACCTAGTGCTCATTTGAAATTCTCAAAGTTGGTCTCCTAAATGTCGCTAGATCCGGTACATGTGATTGCTTTGCTGGTGGTCCTCTTCAATTAAGTTGACGATTAGAGTTCTTGTAGGTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACGGTATGAAGTTCGCTAATAGGGAGTCCAGTAATCTTGTTTTGTTTATACATCTATCGATTTTCATAATATTTTTAGTGCTGCTATTGCAGGATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCCGAAGGAAGAGGGTAAGGCTTCCATAGTTTCACGTTGGCATTGGCTTAGATCTTATTCAGCTCTTACTGGGAAAGAATATCATTGTTCACAATTGAGCTGAAACAAATCTGATGTTTCGTATTTGGGCACGTACAGATCAATGAAATTTTTTCCAACCTCAGTTTGTTTGGAATTGAAGCGTAATGGCTGTTGTACATAATAAAATTTCTTTTCATCAATGGCCTTATTTTATAGGAAA</genome_strand>
        <mrna_strand>CTCTTNTCTTCCNTCTGCCCTTCTCTG...............................................................................................................................................................................................................................................................................................GTTTTNCTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAG................................................................................................................................................................GTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTG...........................................................................................................................................................................................................................GTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACG.........................................................................................GATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCCGAAGGAAGAGGGTAAGGCTTCCATAGTTTCACGTTGGCATTGGCTTAGATCTTATTCAGCTCTTACTGGGAAAGAATATCATTGTTCACAATTGAGCTGAAACAAATCTGATGTTTCGTATTTGGGCACGTACAGATCAATGAAATTTTTTCCAACCTCAGTTTGTTTGGAATTGAAGCGTAATGGCTGTTGTACATAATAAAATTTCTTTTCATCATTGGCCTTATTTTATAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326372" ref_strand="+" ref_description="SGN-E326372 [cTOC-14-C9]">
      <seq>tctttacttccatctgcccttctctggttttacttggagtgggggaaaccatctcttcacagtcttgtcccaaggtacttctgttgaatggtactcatgatcgagaaacttgtggccttagtgcttcttgctttgtgactgccattaccgatgccttaaatcgaacttatggagatcctcataattgtcttaaaaatcctccaaacaaatatatcaacacccttttggtgccgaaaaacggattaatacctatggataaagaaagcctggcttctcaaggaattttcaatgtggtcacggtggattcctttcctgatccaaaattgggtgtgctttttgatcccaaatcattgattcaagcactttccaatctgttgacggatgcatgaacctgaattctactatgatttgttaaaccttaatttatcagaaattttggagcttgtggcacagtagttttcgcaacggatctgaagagaaacgggctgtttgtgagaacttgtagatcgataacaattcaaagacctctgcattgatttcaactccatgaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="64516" stop="61353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64216" g_stop="64191" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64190" i_stop="63904" i_length="287">
            <donor d_prob="0.794" d_score="0.00"/>
            <acceptor a_prob="0.150" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63903" g_stop="63856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="74" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63855" i_stop="63696" i_length="160">
            <donor d_prob="0.666" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63695" g_stop="63570" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="200" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63569" i_stop="62316" i_length="1254">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62315" g_stop="62223" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="293" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62222" i_stop="62004" i_length="219">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62003" g_stop="61830" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="467" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61829" i_stop="61741" i_length="89">
            <donor d_prob="0.454" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61740" g_stop="61653" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="555" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E326372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64216" e_stop="64191"/>
          <exon e_start="63903" e_stop="63856"/>
          <exon e_start="63695" e_stop="63570"/>
          <exon e_start="62315" e_stop="62223"/>
          <exon e_start="62003" e_stop="61830"/>
          <exon e_start="61740" e_stop="61653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTACTTCCATCTGCCCTTCTCTGGTAGAGTAGCCTGCAACTTAAGTTCTTTCACATTAGTTCATAGATATGTTTAGCATATGCAAGTATCTAATTTTGTCGAGTCGATCCTGCTTGTGAGACAAACTAAAACAAGTAGGTTGAAGATATACCTAATATTGGCAAACTAATTTGTTTTCTTTTAATTGAGTTCATCTTCTCAAGCATGGCATTGTCATCACTCATCACTATTTTATTATCATTCTTCTTCTCATTTTTTTTTTGAAAAGAACGAAAATAAGTACTCAGTGGTTTTGCTGCTCCATTTGAAGGTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAGGTAATTTGGGCAATGCAAATAATTCCTGTATTGCTGCTTTCTCAGACAAATCGAGTTGTCTGAGTCAATGATTTCCTCGTCTCATTGATGTTTTTCTCATGTCAATGTTATTAATTTCTTCTTCTCCTTCCCCAACAATTCTTCTTCTTCTTAATCCCAGGTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCTGTAAGTAGCTAAGCATTTATGCGTTTCTTCTCAAATTGACTGATTGTTATGGATTTTCATTTGCCCACGGTGGGATTACACTGGGTATGTTGGTATGTATTTTCATTTAATTGGGGTTTTCACTCTCAGTCCTTATGTGCAGAACATGCATCCTGTTAGTTGAATATTTTTCTAATCATTGCCTAGATGTGTAACTTAAGGAAAGTGATGAGAAATTATGGACTACTCAATAGGTTCCCGAGTGTGATGTAGGCTCCTGAATCTAACCCAAAAGTTACTGAATAAAGCACACATAAAAGTCTCAATGTGTGGATGGATCGTCTGAAGCATTGACAATTGTTCATTCTCAAGCACTTCCACATCAGCAATATTCCAACTTATTTGTCAATTGTTCATTACTAAACTATAGCTGATGACAGATGCCTCAGTTAAATTTCACGGGAGCTCATATGATTTGCCATCCCATTTTTGTGATTACATGATCCGTACATTGAACGTCATGGAATTATGAGTTCCTTCCCCAAGAGATCAGTACTAATGCTGAAGCATTTATTATATGTGGTTTGCGTTGGTGTTTTGGTTCCAATCTTCTATAGTATCGTGTTTACTACATCTCATATCAGGCATCCTGGATAGGCTGGCAAAGTATGAGGGTGACAGTCAAAATTTTATTTTACTTAAATAGAAGTGTTTCTGAAAGTGGAGAGAATTAACTTGATGAAGAATTTAAACTCTCTTCATACATAAGTATTTTCCTACTGCATCTCATAAGCTAATTTTTGAGTCCTATAGTTCTGTAGATCGATGAAAAATGCTACTCCCTTTATCCCAATTGAATATACCAGATGCCATTCGGGTTTTTAAAATATGAGAATTGAAAAAGTCTGTTGTTTAGTATTAGCGGATGGAAAATCTTGGGGCACAGTTGCTTTTTGAATTGTGAAGAATAGAAAGAGAGATATGACAAAGAGGAAAAGTGGCGCAAGATTCCCCTCACACTACATATTAGGCTGTAAAGTTCTTCTTGAGAGTATAAATTATTTAATGGACAAACAATGGATATTCCCTAATATGTTGTAATTTGATCAAAATCATTAGGCTCTCATCACTGTAATTTTAATTTGCTTTTAGTTCATTTGGCAACTAGCTGAGTGTAACACACAACAGTAGATTTCACATACTTGCACAAACAACCTTGAATCATGTCATGAAAATTAAATTTTTTGTTTCTTCTGATGGAATTTTTCTTTTCAGCCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTGGTATGTTCCTGTTTCATGGTTATTAGAAATGCTTCTTGGTAAATCAATAATGTACTTGATCAGTTTCTATTGGTCATGAGATTTGTCGTTCTGATTTGAAAAACCTAGTGCTCATTTGAAATTCTCAAAGTTGGTCTCCTAAATGTCGCTAGATCCGGTACATGTGATTGCTTTGCTGGTGGTCCTCTTCAATTAAGTTGACGATTAGAGTTCTTGTAGGTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACGGTATGAAGTTCGCTAATAGGGAGTCCAGTAATCTTGTTTTGTTTATACATCTATCGATTTTCATAATATTTTTAGTGCTGCTATTGCAGGATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCC</genome_strand>
        <mrna_strand>TCTTTACTTCCATCTGCCCTTCTCTG...............................................................................................................................................................................................................................................................................................GTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAG................................................................................................................................................................GTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTG...........................................................................................................................................................................................................................GTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACG.........................................................................................GATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315381" ref_strand="+" ref_description="SGN-E315381 [cTOA-22-G5]">
      <seq>agttatcggctattcataatatcagttttcaattggtcataagtgcctgaaaagtcatttggatgcctgctttttgtgcttgctaatagtagggaattaaggaacctatccaccttctttgagatctttttgatcaattacacggcttcttataatccataatcttgggaagtttctataatttgcgttttgaagttatcttaaacaatgacggtcaaacgctagtgctaaatgctaagaaccatggcttgaaagttgttatcagtgagtaacttgcaatataaattgaatagtgttttcatcagcaagaattgcagctttctcagaccccactttggggatttcactaggtatgttgttcttgttagagtagcaccttgtagttatctcagaagtgatgaagttgaatttctataggaatttagggtgatgatccttctagaacaaggctctgaacagtaactctcaaagttaaaatctgtttcctgtgctcaaagtggtaaatagtggtcgttaaaccattcaaaatctcttttatttgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0209I20-LntPy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0209I20.1" temp_strand="-" temp_description="C02HBa0209I20.1  AC215420.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0209I20 sequenced_by:kribb upload_account_name:korea">
        <position start="67595" stop="66450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67288" g_stop="66750" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="547" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0209I20.1" gen_strand="-" ref_id="SGN-E315381" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0209I20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67288" e_stop="66750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTCATAATATCAGTTTTCAATTGGTCATAAGTGCCTGAAAAGTCATTTGGATGCCTGCTTTTTGTGCTTGCTAATAGTAGGGAATTAAGGAACCTATCCACCTTCTTTGAGATCTTTTTGATCAATTACACGGCTTCTTATAATCCATAATCTTGGGAAGTTTCTATAATTTGCGTTTTGAAGTTATCTTAAACAATGACGGTCAAACGCTAGTGCTAAATGCTAAGAACCATGGCTTGAAAGTTGTTATCAGTGAGTAACTTGCAATATAAATTGAATAGTGTTTTCATCAGCAAGAATTGCAGCTTTCTCAGACCCCACTTTGGGGATTTCACTAGGTATGTTGTTCTTGTTAGAGTAGCACCTTGTAGTTATCTCAGAAGTGATGAAGTTGAATTTCTATAGGAATTTAGGGTGATGATCCTTCTAGAACAAGGCTCTGAACAGTAACTCTCAAAGTTAAAATCTGTTTCCTGTGCTCAAAGTGGTAAATAGTGTTCGTTAAACCATTCAAAATCTCTTTTATTTGTTGATT</genome_strand>
        <mrna_strand>GCTATTCATAATATCAGTTTTCAATTGGTCATAAGTGCCTGAAAAGTCATTTGGATGCCTGCTTTTTGTGCTTGCTAATAGTAGGGAATTAAGGAACCTATCCACCTTCTTTGAGATCTTTTTGATCAATTACACGGCTTCTTATAATCCATAATCTTGGGAAGTTTCTATAATTTGCGTTTTGAAGTTATCTTAAACAATGACGGTCAAACGCTAGTGCTAAATGCTAAGAACCATGGCTTGAAAGTTGTTATCAGTGAGTAACTTGCAATATAAATTGAATAGTGTTTTCATCAGCAAGAATTGCAGCTTTCTCAGACCCCACTTTGGGGATTTCACTAGGTATGTTGTTCTTGTTAGAGTAGCACCTTGTAGTTATCTCAGAAGTGATGAAGTTGAATTTCTATAGGAATTTAGGGTGATGATCCTTCTAGAACAAGGCTCTGAACAGTAACTCTCAAAGTTAAAATCTGTTTCCTGTGCTCAAAGTGGTAAATAGTGGTCGTTAAACCATTCAAAATCTCTTTTATTTGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>140</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4461" PGL_stop="3011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4461" e_stop="3011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="4461" e_stop="3011" e_length="1451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4461" stop="3698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4460" stop="4021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4141" stop="3724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3726" stop="3011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTTTCACATAACAAATATAGTTTCAGATTTTCACGATGGCATTGAAATTTTGCAGGTTAAGCCTCGTAGCACTTTTACTAGTGGTCGCAACTCTCAGCTTCCGAGCCACTAGTGCTCGTGACTTGCAAGTGTATTCCATGCTCGAAAGGCACGAAAAATGGATGAGTCACCATGGGCGCGTATACAAAGATGATGTTGAAAAGGCAGAGCGATTGAAGATATTTAAAGAAAATGTTGAATTTATCGAGGCATTCAACAATGATGCTGCTCATTCTTACCAGCTTGGCGTCAATAAATTTGCAGATCTAACGAATGAAGAGTTTCAATCTATGGTTGGTAGATATAATCTATCTTTCCTTCCAAAGACATCGAATTTGCAATCATTTAGTTACCAAAGTGAAAATTCCAGTCCTGATAGTTGGAACTGGAGAGAACAGGGTGCTGTTACTCCTGTTAAGGACCAGGGTAAATGTGGTAAGTCCCAAATCAAAGTTCATTCTCCTATTCACAATTTATATGACCGTATTTGATTAGGCCGGGATTTTAATTTAAAACTCAATAAATTAAAAAGACTAGAATTTTGAATCTATAATCTGACTATAGCAGGTTAGACTAAATTTCCCTTGCAAACGTAGGTAGTACCACAAACTAACATACTGTAAATTGATAAACTACTAGTAGCTACTATAAAATGCAGGGTCATGTTGGGCATTTTCAGCGGTAGCAGCAGTAGAAGGACTGAACCAGCTAAAAACTGGTAACTTAATTTCACTATCTGAACAACAACTTCTAGATTGTGAGTCCAGAAACAACAATGGTTGTGGAGGCGGCGTCAGGAACGAAGCATTTCTATACATAGCCGAAAACGGAGGGCTCACAACAGAATCAAATTACCCGTACACTGGAATTCCTGGAAGTTGTAATAGCAAAATGGCGGAATCAACTGCAGTAACAATTTCGAGCTACAAAACAGTGGATCCAAGTGAATCAGCATTGTTACAGGCAGTACTAATTCAGCCAGTTTCTGCAGGTGTAAATATTGGGAGCGACAAATTTCGATTTTACAAAGGTGGAATTTTCAGCGGGGAATGTGGGGAGAGTTCACATCATGCAGTTACAGTGGTAGGGTATGGGACAAGTGAGGATGGTAGTAGTAATTATTGGTTGGTGAAGAATTCATGGGGAGAAAATTGGGGTGAAAGTGGATATATGAGAATGGCTAGAGATGTTGTGGATGGTGGAGTTTGTGGCCTTGCTACTCGAGCTTCTTTTCCTACTGCTTAGTGTTAGACAGAGGATTTTACAACTCTGTTTTATGGTACTTCTTTTAGTTATGTACCATCGTATTATCTTATTCTTCAATCTTTATTATTACGTACCATCTCATTTGATAAGGTTTGTTTATACGTCATCTTTCTCAAATTCTACCTATGAGATTACACTCAG</gDNA_template>
            <first_frame> F  Y  F  H  I  T  N  I  V  S  D  F  H  D  G  I  E  I  L  Q  V  K  P  R  S  T  F  T  S  G  R  N  S  Q  L  P  S  H  *  C  S  *  L  A  S  V  F  H  A  R  K  A  R  K  M  D  E  S  P  W  A  R  I  Q  R  *  C  *  K  G  R  A  I  E  D  I  *  R  K  C  *  I  Y  R  G  I  Q  Q  *  C  C  S  F  L  P  A  W  R  Q  *  I  C  R  S  N  E  *  R  V  S  I  Y  G  W  *  I  *  S  I  F  P  S  K  D  I  E  F  A  I  I  *  L  P  K  *  K  F  Q  S  *  *  L  E  L  E  R  T  G  C  C  Y  S  C  *  G  P  G  *  M  W  *  V  P  N  Q  S  S  F  S  Y  S  Q  F  I  *  P  Y  L  I  R  P  G  F  *  F  K  T  Q  *  I  K  K  T  R  I  L  N  L  *  S  D  Y  S  R  L  D  *  I  S  L  A  N  V  G  S  T  T  N  *  H  T  V  N  *  *  T  T  S  S  Y  Y  K  M  Q  G  H  V  G  H  F  Q  R  *  Q  Q  *  K  D  *  T  S  *  K  L  V  T  *  F  H  Y  L  N  N  N  F  *  I  V  S  P  E  T  T  M  V  V  E  A  A  S  G  T  K  H  F  Y  T  *  P  K  T  E  G  S  Q  Q  N  Q  I  T  R  T  L  E  F  L  E  V  V  I  A  K  W  R  N  Q  L  Q  *  Q  F  R  A  T  K  Q  W  I  Q  V  N  Q  H  C  Y  R  Q  Y  *  F  S  Q  F  L  Q  V  *  I  L  G  A  T  N  F  D  F  T  K  V  E  F  S  A  G  N  V  G  R  V  H  I  M  Q  L  Q  W  *  G  M  G  Q  V  R  M  V  V  V  I  I  G  W  *  R  I  H  G  E  K  I  G  V  K  V  D  I  *  E  W  L  E  M  L  W  M  V  E  F  V  A  L  L  L  E  L  L  F  L  L  L  S  V  R  Q  R  I  L  Q  L  C  F  M  V  L  L  L  V  M  Y  H  R  I  I  L  F  F  N  L  Y  Y  Y  V  P  S  H  L  I  R  F  V  Y  T  S  S  F  S  N  S  T  Y  E  I  T  L   </first_frame>
            <second_frame>  F  I  F  T  *  Q  I  *  F  Q  I  F  T  M  A  L  K  F  C  R  L  S  L  V  A  L  L  L  V  V  A  T  L  S  F  R  A  T  S  A  R  D  L  Q  V  Y  S  M  L  E  R  H  E  K  W  M  S  H  H  G  R  V  Y  K  D  D  V  E  K  A  E  R  L  K  I  F  K  E  N  V  E  F  I  E  A  F  N  N  D  A  A  H  S  Y  Q  L  G  V  N  K  F  A  D  L  T  N  E  E  F  Q  S  M  V  G  R  Y  N  L  S  F  L  P  K  T  S  N  L  Q  S  F  S  Y  Q  S  E  N  S  S  P  D  S  W  N  W  R  E  Q  G  A  V  T  P  V  K  D  Q  G  K  C  G  K  S  Q  I  K  V  H  S  P  I  H  N  L  Y  D  R  I  *  L  G  R  D  F  N  L  K  L  N  K  L  K  R  L  E  F  *  I  Y  N  L  T  I  A  G  *  T  K  F  P  L  Q  T  *  V  V  P  Q  T  N  I  L  *  I  D  K  L  L  V  A  T  I  K  C  R  V  M  L  G  I  F  S  G  S  S  S  R  R  T  E  P  A  K  N  W  *  L  N  F  T  I  *  T  T  T  S  R  L  *  V  Q  K  Q  Q  W  L  W  R  R  R  Q  E  R  S  I  S  I  H  S  R  K  R  R  A  H  N  R  I  K  L  P  V  H  W  N  S  W  K  L  *  *  Q  N  G  G  I  N  C  S  N  N  F  E  L  Q  N  S  G  S  K  *  I  S  I  V  T  G  S  T  N  S  A  S  F  C  R  C  K  Y  W  E  R  Q  I  S  I  L  Q  R  W  N  F  Q  R  G  M  W  G  E  F  T  S  C  S  Y  S  G  R  V  W  D  K  *  G  W  *  *  *  L  L  V  G  E  E  F  M  G  R  K  L  G  *  K  W  I  Y  E  N  G  *  R  C  C  G  W  W  S  L  W  P  C  Y  S  S  F  F  S  Y  C  L  V  L  D  R  G  F  Y  N  S  V  L  W  Y  F  F  *  L  C  T  I  V  L  S  Y  S  S  I  F  I  I  T  Y  H  L  I  *  *  G  L  F  I  R  H  L  S  Q  I  L  P  M  R  L  H  S  </second_frame>
            <third_frame>   L  F  S  H  N  K  Y  S  F  R  F  S  R  W  H  *  N  F  A  G  *  A  S  *  H  F  Y  *  W  S  Q  L  S  A  S  E  P  L  V  L  V  T  C  K  C  I  P  C  S  K  G  T  K  N  G  *  V  T  M  G  A  Y  T  K  M  M  L  K  R  Q  S  D  *  R  Y  L  K  K  M  L  N  L  S  R  H  S  T  M  M  L  L  I  L  T  S  L  A  S  I  N  L  Q  I  *  R  M  K  S  F  N  L  W  L  V  D  I  I  Y  L  S  F  Q  R  H  R  I  C  N  H  L  V  T  K  V  K  I  P  V  L  I  V  G  T  G  E  N  R  V  L  L  L  L  L  R  T  R  V  N  V  V  S  P  K  S  K  F  I  L  L  F  T  I  Y  M  T  V  F  D  *  A  G  I  L  I  *  N  S  I  N  *  K  D  *  N  F  E  S  I  I  *  L  *  Q  V  R  L  N  F  P  C  K  R  R  *  Y  H  K  L  T  Y  C  K  L  I  N  Y  *  *  L  L  *  N  A  G  S  C  W  A  F  S  A  V  A  A  V  E  G  L  N  Q  L  K  T  G  N  L  I  S  L  S  E  Q  Q  L  L  D  C  E  S  R  N  N  N  G  C  G  G  G  V  R  N  E  A  F  L  Y  I  A  E  N  G  G  L  T  T  E  S  N  Y  P  Y  T  G  I  P  G  S  C  N  S  K  M  A  E  S  T  A  V  T  I  S  S  Y  K  T  V  D  P  S  E  S  A  L  L  Q  A  V  L  I  Q  P  V  S  A  G  V  N  I  G  S  D  K  F  R  F  Y  K  G  G  I  F  S  G  E  C  G  E  S  S  H  H  A  V  T  V  V  G  Y  G  T  S  E  D  G  S  S  N  Y  W  L  V  K  N  S  W  G  E  N  W  G  E  S  G  Y  M  R  M  A  R  D  V  V  D  G  G  V  C  G  L  A  T  R  A  S  F  P  T  A  *  C  *  T  E  D  F  T  T  L  F  Y  G  T  S  F  S  Y  V  P  S  Y  Y  L  I  L  Q  S  L  L  L  R  T  I  S  F  D  K  V  C  L  Y  V  I  F  L  K  F  Y  L  *  D  Y  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3766" stop="3173"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAGSCWAFSAVAAVEGLNQLKTGNLISLSEQQLLDCESRNNNGCGGGVRNEAFLYIAENGGLTTESNYPYTGIPGSCNSKMAESTAVTISSYKTVDPSESALLQAVLIQPVSAGVNIGSDKFRFYKGGIFSGECGESSHHAVTVVGYGTSEDGSSNYWLVKNSWGENWGESGYMRMARDVVDGGVCGLATRASFPTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4436" stop="3927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQIFTMALKFCRLSLVALLLVVATLSFRATSARDLQVYSMLERHEKWMSHHGRVYKDDVEKAERLKIFKENVEFIEAFNNDAAHSYQLGVNKFADLTNEEFQSMVGRYNLSFLPKTSNLQSFSYQSENSSPDSWNWREQGAVTPVKDQGKCGKSQIKVHSPIHNLYDRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9819" PGL_stop="8195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9819" e_stop="9282"/>
            <exon e_start="8905" e_stop="8195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="9819" e_stop="9282" e_length="538"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9281" i_stop="8906" i_length="376"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8905" e_stop="8195" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9819" stop="9282"/>
              <exon start="8905" stop="8648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9794" stop="9282"/>
              <exon start="8905" stop="8577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9791" stop="9282"/>
              <exon start="8905" stop="8645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9778" stop="9282"/>
              <exon start="8905" stop="8885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9761" stop="9282"/>
              <exon start="8905" stop="8885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9535" stop="9282"/>
              <exon start="8905" stop="8524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9471" stop="9282"/>
              <exon start="8905" stop="8549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8887" stop="8217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8857" stop="8442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8750" stop="8195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8697" stop="8274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCGATAAGTTCTTATTCACTCAGCCTCTCTTTTAGTTTTTAACTTAGTTCCTATTTTGATATTTCATTACCATTTACCATCAATGGCTTCCAATTTTTTCCTCAAGAATATTACTGTTGTTCTTCTTCTTTTTTCCATTCTTAGCCTATATCCCTTTATAGTAACTTCCCGCAACTTAAAAGAATTATCCATGCTTGAAAGGCATGAAAATTGGATGGTTCATCATGGACGTGTATACAAAGATGATATAGAAAAAGAACACCGCTTCAAAACATTCAAGGAAAACGTTGAGTTCATCGAATCTTTCAACAAGAACGGAACTCAACGTTATAAGCTAGCCATCAATAAATATGCTGATCTGACCACTGAGGAATTCACAACATCATTTATGGGGCTCGACACTTCATTACTATCCCAGCAAGAATCAACAGCTACAACAACGTCCTTTAAATATGATAGTGTGACTGAAGTTCCAAATAGCATGGACTGGAGAAAGAGAGGGAGTGTCACAGGAGTCAAGGATCAAGGTGTATGTG : GATGTTGTTGGGCATTTTCTGCGGCCGCGGCTATAGAAGGAGCATATCAAATTGCAAACAACGAACTAATCTCTCTTTCAGAGCAACAACTATTGGATTGCTCTACGCAGAACAAAGGTTGTGAGGGCGGACTAATGACTGTCGCTTACGACTTCTTACTTCAGAACAATGGCGGGGGCATTACCACAGAGACTAATTATCCTTATGAAGAAGCTCAAAATGTTTGCAAGACCGAACAACCAGCAGCAGTTACTATCAATGGCTACGAAGTCGTACCATCTGACGAGTCATCGTTGTTGAAAGCTGTAGTGAATCAACCTATTTCTGTTGGTATTGCGGCTAACGATGAGTTTCATATGTACGGAAGTGGAATATATGATGGAAGTTGTAATTCTAGACTGAATCATGCAGTGACAGTTATAGGTTATGGGACAAGTGAAGAAGATGGTACAAAATATTGGATAGTGAAGAATTCATGGGGGAGTGATTGGGGTGAGGAAGGATATATGAGAATTGCTAGAGATGTTGGAGTTGATGGTGGCCATTGTGGCATTGCAAAGGTTGCTTCGTTCCCTACTGTTTGAATTTATATTACAAAAAAATAGGCATTGCTATTAATATTATGTAGAAGAGTTGCCAATGCTATAGCTTGTAATTCGTGTTTCAACAATAAATTAATCAATATATGAATGAGAAGTATTTTTCTTTTTT</gDNA_template>
            <first_frame> H  R  *  V  L  I  H  S  A  S  L  L  V  F  N  L  V  P  I  L  I  F  H  Y  H  L  P  S  M  A  S  N  F  F  L  K  N  I  T  V  V  L  L  L  F  S  I  L  S  L  Y  P  F  I  V  T  S  R  N  L  K  E  L  S  M  L  E  R  H  E  N  W  M  V  H  H  G  R  V  Y  K  D  D  I  E  K  E  H  R  F  K  T  F  K  E  N  V  E  F  I  E  S  F  N  K  N  G  T  Q  R  Y  K  L  A  I  N  K  Y  A  D  L  T  T  E  E  F  T  T  S  F  M  G  L  D  T  S  L  L  S  Q  Q  E  S  T  A  T  T  T  S  F  K  Y  D  S  V  T  E  V  P  N  S  M  D  W  R  K  R  G  S  V  T  G  V  K  D  Q  G  V  C   : G  C  C  W  A  F  S  A  A  A  A  I  E  G  A  Y  Q  I  A  N  N  E  L  I  S  L  S  E  Q  Q  L  L  D  C  S  T  Q  N  K  G  C  E  G  G  L  M  T  V  A  Y  D  F  L  L  Q  N  N  G  G  G  I  T  T  E  T  N  Y  P  Y  E  E  A  Q  N  V  C  K  T  E  Q  P  A  A  V  T  I  N  G  Y  E  V  V  P  S  D  E  S  S  L  L  K  A  V  V  N  Q  P  I  S  V  G  I  A  A  N  D  E  F  H  M  Y  G  S  G  I  Y  D  G  S  C  N  S  R  L  N  H  A  V  T  V  I  G  Y  G  T  S  E  E  D  G  T  K  Y  W  I  V  K  N  S  W  G  S  D  W  G  E  E  G  Y  M  R  I  A  R  D  V  G  V  D  G  G  H  C  G  I  A  K  V  A  S  F  P  T  V  *  I  Y  I  T  K  K  *  A  L  L  L  I  L  C  R  R  V  A  N  A  I  A  C  N  S  C  F  N  N  K  L  I  N  I  *  M  R  S  I  F  L  F  </first_frame>
            <second_frame>  I  D  K  F  L  F  T  Q  P  L  F  *  F  L  T  *  F  L  F  *  Y  F  I  T  I  Y  H  Q  W  L  P  I  F  S  S  R  I  L  L  L  F  F  F  F  F  P  F  L  A  Y  I  P  L  *  *  L  P  A  T  *  K  N  Y  P  C  L  K  G  M  K  I  G  W  F  I  M  D  V  Y  T  K  M  I  *  K  K  N  T  A  S  K  H  S  R  K  T  L  S  S  S  N  L  S  T  R  T  E  L  N  V  I  S  *  P  S  I  N  M  L  I  *  P  L  R  N  S  Q  H  H  L  W  G  S  T  L  H  Y  Y  P  S  K  N  Q  Q  L  Q  Q  R  P  L  N  M  I  V  *  L  K  F  Q  I  A  W  T  G  E  R  E  G  V  S  Q  E  S  R  I  K  V  Y  V  :  D  V  V  G  H  F  L  R  P  R  L  *  K  E  H  I  K  L  Q  T  T  N  *  S  L  F  Q  S  N  N  Y  W  I  A  L  R  R  T  K  V  V  R  A  D  *  *  L  S  L  T  T  S  Y  F  R  T  M  A  G  A  L  P  Q  R  L  I  I  L  M  K  K  L  K  M  F  A  R  P  N  N  Q  Q  Q  L  L  S  M  A  T  K  S  Y  H  L  T  S  H  R  C  *  K  L  *  *  I  N  L  F  L  L  V  L  R  L  T  M  S  F  I  C  T  E  V  E  Y  M  M  E  V  V  I  L  D  *  I  M  Q  *  Q  L  *  V  M  G  Q  V  K  K  M  V  Q  N  I  G  *  *  R  I  H  G  G  V  I  G  V  R  K  D  I  *  E  L  L  E  M  L  E  L  M  V  A  I  V  A  L  Q  R  L  L  R  S  L  L  F  E  F  I  L  Q  K  N  R  H  C  Y  *  Y  Y  V  E  E  L  P  M  L  *  L  V  I  R  V  S  T  I  N  *  S  I  Y  E  *  E  V  F  F  F  F </second_frame>
            <third_frame>   S  I  S  S  Y  S  L  S  L  S  F  S  F  *  L  S  S  Y  F  D  I  S  L  P  F  T  I  N  G  F  Q  F  F  P  Q  E  Y  Y  C  C  S  S  S  F  F  H  S  *  P  I  S  L  Y  S  N  F  P  Q  L  K  R  I  I  H  A  *  K  A  *  K  L  D  G  S  S  W  T  C  I  Q  R  *  Y  R  K  R  T  P  L  Q  N  I  Q  G  K  R  *  V  H  R  I  F  Q  Q  E  R  N  S  T  L  *  A  S  H  Q  *  I  C  *  S  D  H  *  G  I  H  N  I  I  Y  G  A  R  H  F  I  T  I  P  A  R  I  N  S  Y  N  N  V  L  *  I  *  *  C  D  *  S  S  K  *  H  G  L  E  K  E  R  E  C  H  R  S  Q  G  S  R  C  M  W :   M  L  L  G  I  F  C  G  R  G  Y  R  R  S  I  S  N  C  K  Q  R  T  N  L  S  F  R  A  T  T  I  G  L  L  Y  A  E  Q  R  L  *  G  R  T  N  D  C  R  L  R  L  L  T  S  E  Q  W  R  G  H  Y  H  R  D  *  L  S  L  *  R  S  S  K  C  L  Q  D  R  T  T  S  S  S  Y  Y  Q  W  L  R  S  R  T  I  *  R  V  I  V  V  E  S  C  S  E  S  T  Y  F  C  W  Y  C  G  *  R  *  V  S  Y  V  R  K  W  N  I  *  W  K  L  *  F  *  T  E  S  C  S  D  S  Y  R  L  W  D  K  *  R  R  W  Y  K  I  L  D  S  E  E  F  M  G  E  *  L  G  *  G  R  I  Y  E  N  C  *  R  C  W  S  *  W  W  P  L  W  H  C  K  G  C  F  V  P  Y  C  L  N  L  Y  Y  K  K  I  G  I  A  I  N  I  M  *  K  S  C  Q  C  Y  S  L  *  F  V  F  Q  Q  *  I  N  Q  Y  M  N  E  K  Y  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9810" stop="9282"/>
                    <exon start="8905" stop="8322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLIHSASLLVFNLVPILIFHYHLPSMASNFFLKNITVVLLLFSILSLYPFIVTSRNLKELSMLERHENWMVHHGRVYKDDIEKEHRFKTFKENVEFIESFNKNGTQRYKLAINKYADLTTEEFTTSFMGLDTSLLSQQESTATTTSFKYDSVTEVPNSMDWRKRGSVTGVKDQGVCGCCWAFSAAAAIEGAYQIANNELISLSEQQLLDCSTQNKGCEGGLMTVAYDFLLQNNGGGITTETNYPYEEAQNVCKTEQPAAVTINGYEVVPSDESSLLKAVVNQPISVGIAANDEFHMYGSGIYDGSCNSRLNHAVTVIGYGTSEEDGTKYWIVKNSWGSDWGEEGYMRIARDVGVDGGHCGIAKVASFPTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18532" PGL_stop="17725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18532" e_stop="17725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="18532" e_stop="17725" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18532" stop="17725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18530" stop="17727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19191" PGL_stop="18543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19191" e_stop="18543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="19191" e_stop="18543" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19191" stop="18543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19190" stop="18806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19190" stop="18543"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27911" PGL_stop="25482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27911" e_stop="27271"/>
            <exon e_start="27188" e_stop="26425"/>
            <exon e_start="25502" e_stop="25482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27911" e_stop="27271" e_length="641"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27270" i_stop="27189" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27188" e_stop="26425" e_length="764"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26424" i_stop="25503" i_length="922"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="25502" e_stop="25482" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27911" stop="27313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27911" stop="27406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27902" stop="27272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27902" stop="27317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27902" stop="27394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27902" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27902" stop="27478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27900" stop="27485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27896" stop="27448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27896" stop="27486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27894" stop="27271"/>
              <exon start="27188" stop="27171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27894" stop="27293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27894" stop="27313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27894" stop="27394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27893" stop="27301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27893" stop="27457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27893" stop="27501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27892" stop="27271"/>
              <exon start="27188" stop="27166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27892" stop="27280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27892" stop="27281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27892" stop="27406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27890" stop="27518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27889" stop="27291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27889" stop="27298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27889" stop="27395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27889" stop="27448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27889" stop="27501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27886" stop="27408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27884" stop="27538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27866" stop="27321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27865" stop="27271"/>
              <exon start="27188" stop="27179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27854" stop="27271"/>
              <exon start="27188" stop="27168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27845" stop="27295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27843" stop="27514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27822" stop="27271"/>
              <exon start="27188" stop="27172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27822" stop="27282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27790" stop="27321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27775" stop="27289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27759" stop="27271"/>
              <exon start="27188" stop="27171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27752" stop="27282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27749" stop="27293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27271"/>
              <exon start="27188" stop="27181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27736" stop="27271"/>
              <exon start="27188" stop="27094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27729" stop="27273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27729" stop="27273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27681" stop="27271"/>
              <exon start="27188" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27646" stop="27297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27601" stop="27271"/>
              <exon start="27188" stop="27076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27593" stop="27271"/>
              <exon start="27188" stop="27059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27451" stop="27271"/>
              <exon start="27188" stop="26863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27378" stop="27271"/>
              <exon start="27188" stop="26762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27355" stop="27271"/>
              <exon start="27188" stop="26775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27302" stop="27271"/>
              <exon start="27188" stop="26712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27297" stop="27271"/>
              <exon start="27188" stop="26651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27294" stop="27271"/>
              <exon start="27188" stop="26669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27170" stop="26667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27071" stop="26575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27030" stop="26464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26985" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26971" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267602" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26957" stop="26425"/>
              <exon start="25502" stop="25482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26940" stop="26425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267213" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26936" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26814" stop="26425"/>
              <exon start="25502" stop="25482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26774" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265246" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAACAAAACAAAGAGTGAAAAAAACATAAAAGATCAAGAAAAAGAATAATGGCTTGCATATTTGCTGAGAAATGGGAGGAACTTAGTGGAAAAAACAATTGGGATGGGCTATTAAACCCCTTGGATCTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTTCAGAGAGAGCATCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACTTCTTTACTAAGGTTGGACTTGACCCAAAAAAGTATTGTGTAACCAAATATTTCTATGCTACCTCATCCATGCCACTTCCTGATGCTTTCATAACGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGCTTCATTAGGAAGGAGGGATATTGTGATTAATTGGAGAGGAACTTTGCAAGTATTGGAGTGGGTTAATGACCTTCAATTTTTACTTGTCCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCATCCTTTGGTGCATCATGGCTTCCATAACATTTATACAACTGAAAATCCACGATCACAGTTTAATAAGACGTGTGTTAGGGATCAG : GTAATGGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGGATGAAGAGGTGAGCATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATAAAATCAATAAAGCAAGTAATGGCAAGGAGTTTCCAGTGACTGCTTTTGTATTCGCAAGCCCTAAAGTTGGAGATGTCAATTTTCTCAATGCATTTTCCAAACTGAAGCATCTTCATATCTTGAGGATTCATAATGTATTGGATATTGTTCCGAAATACCCACCCATCGGGTATTTTGACGTTGGTCAGGAGATAATGATTGATACGACAAAATCTCCGTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTATTGGAACCATATTTGCATGGAATTGCTGGGACTCAAGGAATAGGAATGTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTGAACAAACAGTGGAACGTACTGAAAGATGAACATTGTATTCCTCCCCTTTGGTGGTCTGAGAAGCACAAAGGAATGGTTCAACAAGAAGATGGAACTTGGCTTCTCCAGGATCGTGATGAGTATGAGTTCTGAGAGATCAAAGCAGTTGGATTTCAAATTGTTGTTTTGTTATTTCATGTATTGTTTGAATAAAAGGTTTTCCTCAGCATGGGGAAACCGCATCCTATTTTTTATATATGCAAATCGTATTATGGTTCCTTTATAACAACAATATGAGTTCTTGTCAGTTA : ATTAAAAAAAAAAAAAATCCA</gDNA_template>
            <first_frame> E  N  K  T  K  S  E  K  N  I  K  D  Q  E  K  E  *  W  L  A  Y  L  L  R  N  G  R  N  L  V  E  K  T  I  G  M  G  Y  *  T  P  W  I  L  I  F  V  N  T  S  F  I  T  E  N  W  L  K  Q  L  M  T  L  S  F  Q  R  E  H  L  N  M  Q  E  L  A  D  T  L  W  K  T  S  L  L  R  L  D  L  T  Q  K  S  I  V  *  P  N  I  S  M  L  P  H  P  C  H  F  L  M  L  S  *  R  N  H  C  Q  G  K  H  G  V  R  N  Q  I  L  W  D  I  L  L  W  L  L  M  R  V  K  L  H  *  E  G  G  I  L  *  L  I  G  E  E  L  C  K  Y  W  S  G  L  M  T  F  N  F  Y  L  S  Q  H  P  K  Y  L  V  M  E  V  C  F  L  C  F  I  L  W  C  I  M  A  S  I  T  F  I  Q  L  K  I  H  D  H  S  L  I  R  R  V  L  G  I  R :   *  W  K  K  *  K  D  W  W  R  N  I  R  M  K  R  *  A  *  L  *  L  D  T  A  *  V  H  H  L  Q  L  *  M  Q  L  T  *  L  S  I  K  S  I  K  Q  V  M  A  R  S  F  Q  *  L  L  L  Y  S  Q  A  L  K  L  E  M  S  I  F  S  M  H  F  P  N  *  S  I  F  I  S  *  G  F  I  M  Y  W  I  L  F  R  N  T  H  P  S  G  I  L  T  L  V  R  R  *  *  L  I  R  Q  N  L  R  M  *  S  L  Q  E  N  L  *  A  G  I  Y  W  N  H  I  C  M  E  L  L  G  L  K  E  *  E  C  *  Q  V  L  N  *  R  *  I  A  I  F  H  L  *  T  N  S  G  T  Y  *  K  M  N  I  V  F  L  P  F  G  G  L  R  S  T  K  E  W  F  N  K  K  M  E  L  G  F  S  R  I  V  M  S  M  S  S  E  R  S  K  Q  L  D  F  K  L  L  F  C  Y  F  M  Y  C  L  N  K  R  F  S  S  A  W  G  N  R  I  L  F  F  I  Y  A  N  R  I  M  V  P  L  *  Q  Q  Y  E  F  L  S  V   : N  *  K  K  K  K  S  </first_frame>
            <second_frame>  R  T  K  Q  R  V  K  K  T  *  K  I  K  K  K  N  N  G  L  H  I  C  *  E  M  G  G  T  *  W  K  K  Q  L  G  W  A  I  K  P  L  G  S  *  S  S  *  I  H  H  S  L  R  R  I  G  S  S  N  L  *  H  F  H  F  R  E  S  I  *  I  C  R  S  *  Q  I  L  Y  G  K  L  L  Y  *  G  W  T  *  P  K  K  V  L  C  N  Q  I  F  L  C  Y  L  I  H  A  T  S  *  C  F  H  N  E  I  I  V  K  G  S  M  E  *  G  I  K  F  Y  G  I  Y  C  C  G  Y  *  *  G  *  S  F  I  R  K  E  G  Y  C  D  *  L  E  R  N  F  A  S  I  G  V  G  *  *  P  S  I  F  T  C  P  S  T  P  S  I  W  *  W  R  F  A  S  F  V  S  S  F  G  A  S  W  L  P  *  H  L  Y  N  *  K  S  T  I  T  V  *  *  D  V  C  *  G  S   : G  N  G  R  S  E  K  I  G  G  G  I  *  G  *  R  G  E  H  N  C  D  W  T  Q  P  R  C  I  T  C  N  S  K  C  S  *  H  S  F  Q  *  N  Q  *  S  K  *  W  Q  G  V  S  S  D  C  F  C  I  R  K  P  *  S  W  R  C  Q  F  S  Q  C  I  F  Q  T  E  A  S  S  Y  L  E  D  S  *  C  I  G  Y  C  S  E  I  P  T  H  R  V  F  *  R  W  S  G  D  N  D  *  Y  D  K  I  S  V  C  E  A  S  R  R  T  C  E  L  A  F  I  G  T  I  F  A  W  N  C  W  D  S  R  N  R  N  V  S  R  F  *  T  R  G  E  S  R  Y  F  T  C  E  Q  T  V  E  R  T  E  R  *  T  L  Y  S  S  P  L  V  V  *  E  A  Q  R  N  G  S  T  R  R  W  N  L  A  S  P  G  S  *  *  V  *  V  L  R  D  Q  S  S  W  I  S  N  C  C  F  V  I  S  C  I  V  *  I  K  G  F  P  Q  H  G  E  T  A  S  Y  F  L  Y  M  Q  I  V  L  W  F  L  Y  N  N  N  M  S  S  C  Q  L  :  I  K  K  K  K  N  P </second_frame>
            <third_frame>   E  Q  N  K  E  *  K  K  H  K  R  S  R  K  R  I  M  A  C  I  F  A  E  K  W  E  E  L  S  G  K  N  N  W  D  G  L  L  N  P  L  D  L  D  L  R  K  Y  I  I  H  Y  G  E  L  A  Q  A  T  Y  D  T  F  I  S  E  R  A  S  K  Y  A  G  A  S  R  Y  S  M  E  N  F  F  T  K  V  G  L  D  P  K  K  Y  C  V  T  K  Y  F  Y  A  T  S  S  M  P  L  P  D  A  F  I  T  K  S  L  S  R  E  A  W  S  K  E  S  N  F  M  G  Y  I  A  V  A  T  D  E  G  K  A  S  L  G  R  R  D  I  V  I  N  W  R  G  T  L  Q  V  L  E  W  V  N  D  L  Q  F  L  L  V  P  A  P  Q  V  F  G  D  G  G  L  L  P  L  F  H  P  L  V  H  H  G  F  H  N  I  Y  T  T  E  N  P  R  S  Q  F  N  K  T  C  V  R  D  Q  :  V  M  E  E  V  K  R  L  V  E  E  Y  K  D  E  E  V  S  I  T  V  T  G  H  S  L  G  A  S  L  A  T  L  N  A  V  D  I  A  F  N  K  I  N  K  A  S  N  G  K  E  F  P  V  T  A  F  V  F  A  S  P  K  V  G  D  V  N  F  L  N  A  F  S  K  L  K  H  L  H  I  L  R  I  H  N  V  L  D  I  V  P  K  Y  P  P  I  G  Y  F  D  V  G  Q  E  I  M  I  D  T  T  K  S  P  Y  V  K  P  P  G  E  P  V  S  W  H  L  L  E  P  Y  L  H  G  I  A  G  T  Q  G  I  G  M  L  A  G  F  K  L  E  V  N  R  D  I  S  L  V  N  K  Q  W  N  V  L  K  D  E  H  C  I  P  P  L  W  W  S  E  K  H  K  G  M  V  Q  Q  E  D  G  T  W  L  L  Q  D  R  D  E  Y  E  F  *  E  I  K  A  V  G  F  Q  I  V  V  L  L  F  H  V  L  F  E  *  K  V  F  L  S  M  G  K  P  H  P  I  F  Y  I  C  K  S  Y  Y  G  S  F  I  T  T  I  *  V  L  V  S  * :   L  K  K  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27891" stop="27271"/>
                    <exon start="27188" stop="26583"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKHKRSRKRIMACIFAEKWEELSGKNNWDGLLNPLDLDLRKYIIHYGELAQATYDTFISERASKYAGASRYSMENFFTKVGLDPKKYCVTKYFYATSSMPLPDAFITKSLSREAWSKESNFMGYIAVATDEGKASLGRRDIVINWRGTLQVLEWVNDLQFLLVPAPQVFGDGGLLPLFHPLVHHGFHNIYTTENPRSQFNKTCVRDQVMEEVKRLVEEYKDEEVSITVTGHSLGASLATLNAVDIAFNKINKASNGKEFPVTAFVFASPKVGDVNFLNAFSKLKHLHILRIHNVLDIVPKYPPIGYFDVGQEIMIDTTKSPYVKPPGEPVSWHLLEPYLHGIAGTQGIGMLAGFKLEVNRDISLVNKQWNVLKDEHCIPPLWWSEKHKGMVQQEDGTWLLQDRDEYEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26443" PGL_stop="27053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26443" e_stop="27053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="26443" e_stop="27053" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26443" stop="27053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26443" stop="27049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26447" stop="26938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGTTGTTATAAAGGAACCATAATACGATTTGCATATATAAAAAATAGGATGCGGTTTCCCCATGCTGAGGAAAACCTTTTATTCAAACAATACATGAAATAACAAAACAACAATTTGAAATCCAACTGCTTTGATCTCTCAGAACTCATACTCATCACGATCCTGGAGAAGCCAAGTTCCATCTTCTTGTTGAACCATTCCTTTGTGCTTCTCAGACCACCAAAGGGGAGGAATACAATGTTCATCTTTCAGTACGTTCCACTGTTTGTTCACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAACATTCCTATTCCTTGAGTCCCAGCAATTCCATGCAAATATGGTTCCAATAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATACGGAGATTTTGTCGTATCAATCATTATCTCCTGACCAACGTCAAAATACCCGATGGGTGGGTATTTCGGAACAATATCCAATACATTATGAATCCTCAAGATATGAAGATGCTTCAGTTTGGAAAATGCATTGAGAAAATTGACATCTCCAACTTTAGGGCTTGCGAATACAAAAGCAGTCACTGGAAACTCCTTGCCATTACTTGC</gDNA_template>
            <first_frame> I  V  V  I  K  E  P  *  Y  D  L  H  I  *  K  I  G  C  G  F  P  M  L  R  K  T  F  Y  S  N  N  T  *  N  N  K  T  T  I  *  N  P  T  A  L  I  S  Q  N  S  Y  S  S  R  S  W  R  S  Q  V  P  S  S  C  *  T  I  P  L  C  F  S  D  H  Q  R  G  G  I  Q  C  S  S  F  S  T  F  H  C  L  F  T  S  E  I  S  R  F  T  S  S  L  K  P  A  N  I  P  I  P  *  V  P  A  I  P  C  K  Y  G  S  N  K  C  Q  L  T  G  S  P  G  G  F  T  Y  G  D  F  V  V  S  I  I  I  S  *  P  T  S  K  Y  P  M  G  G  Y  F  G  T  I  S  N  T  L  *  I  L  K  I  *  R  C  F  S  L  E  N  A  L  R  K  L  T  S  P  T  L  G  L  A  N  T  K  A  V  T  G  N  S  L  P  L  L   </first_frame>
            <second_frame>  L  L  L  *  R  N  H  N  T  I  C  I  Y  K  K  *  D  A  V  S  P  C  *  G  K  P  F  I  Q  T  I  H  E  I  T  K  Q  Q  F  E  I  Q  L  L  *  S  L  R  T  H  T  H  H  D  P  G  E  A  K  F  H  L  L  V  E  P  F  L  C  A  S  Q  T  T  K  G  E  E  Y  N  V  H  L  S  V  R  S  T  V  C  S  Q  V  K  Y  R  D  S  P  L  V  *  N  L  L  T  F  L  F  L  E  S  Q  Q  F  H  A  N  M  V  P  I  N  A  S  S  Q  V  L  L  E  A  S  H  T  E  I  L  S  Y  Q  S  L  S  P  D  Q  R  Q  N  T  R  W  V  G  I  S  E  Q  Y  P  I  H  Y  E  S  S  R  Y  E  D  A  S  V  W  K  M  H  *  E  N  *  H  L  Q  L  *  G  L  R  I  Q  K  Q  S  L  E  T  P  C  H  Y  L  </second_frame>
            <third_frame>   C  C  Y  K  G  T  I  I  R  F  A  Y  I  K  N  R  M  R  F  P  H  A  E  E  N  L  L  F  K  Q  Y  M  K  *  Q  N  N  N  L  K  S  N  C  F  D  L  S  E  L  I  L  I  T  I  L  E  K  P  S  S  I  F  L  L  N  H  S  F  V  L  L  R  P  P  K  G  R  N  T  M  F  I  F  Q  Y  V  P  L  F  V  H  K  *  N  I  A  I  H  L  *  F  K  T  C  *  H  S  Y  S  L  S  P  S  N  S  M  Q  I  W  F  Q  *  M  P  A  H  R  F  S  W  R  L  H  I  R  R  F  C  R  I  N  H  Y  L  L  T  N  V  K  I  P  D  G  W  V  F  R  N  N  I  Q  Y  I  M  N  P  Q  D  M  K  M  L  Q  F  G  K  C  I  E  K  I  D  I  S  N  F  R  A  C  E  Y  K  S  S  H  W  K  L  L  A  I  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26811" stop="27053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPAHRFSWRLHIRRFCRINHYLLTNVKIPDGWVFRNNIQYIMNPQDMKMLQFGKCIEKIDISNFRACEYKSSHWKLLAITC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26750" stop="26980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLTFLFLESQQFHANMVPINASSQVLLEASHTEILSYQSLSPDQRQNTRWVGISEQYPIHYESSRYEDASVWKMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42935" PGL_stop="40793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42935" e_stop="42435"/>
            <exon e_start="40832" e_stop="40793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.450"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42935" e_stop="42435" e_length="501"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42434" i_stop="40833" i_length="1602"/>
          </intron>
          <exon e_serial="2" e_score="0.450">
            <gDNA_exon_boundary e_start="40832" e_stop="40793" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42935" stop="42435"/>
              <exon start="40832" stop="40793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42934" stop="42435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAGCCTCCAGGAGAACCTGTGAGCTGGCATTTGCTGGAGCCCTACTTGCATGGAGTCGCTGGAACTCAAGGTTTAGGACTTTTAGCAGGTTTTAAACTAGAGGTGAATCGCGATATTTCACTTGTCAACAAGCAGTGGGACGTATTGAAAGATGAATATTGCATTCCTGGGCTTTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTATGTTGGATCGCGATGAGTATGACTTCTGAGGGAGCTACCTACACTTTTAAAAAGTGATCATTTTATTTACTTTTAAGAAATGTTTGAATAAAAGTTTTTTTTTTTTTTAATGTATGAGTTATGTATCTCTAGTTGATTAGGCATGGCTTACCTATGCAGTGTGTACTCAAATTTATTATATGCATGAAATAATATATTGAATGTTTTTGTTTGCTTATAAGCTAAAA : TGAGAGAGAGATTGACAAAAGATAAGCAAGAGAGACTTGG</gDNA_template>
            <first_frame> V  G  Q  E  L  M  I  D  T  T  K  S  P  Y  V  K  P  P  G  E  P  V  S  W  H  L  L  E  P  Y  L  H  G  V  A  G  T  Q  G  L  G  L  L  A  G  F  K  L  E  V  N  R  D  I  S  L  V  N  K  Q  W  D  V  L  K  D  E  Y  C  I  P  G  L  W  W  V  E  K  N  K  G  M  V  Q  Q  E  D  G  S  W  L  M  L  D  R  D  E  Y  D  F  *  G  S  Y  L  H  F  *  K  V  I  I  L  F  T  F  K  K  C  L  N  K  S  F  F  F  F  *  C  M  S  Y  V  S  L  V  D  *  A  W  L  T  Y  A  V  C  T  Q  I  Y  Y  M  H  E  I  I  Y  *  M  F  L  F  A  Y  K  L  K  :  *  E  R  D  *  Q  K  I  S  K  R  D  L  </first_frame>
            <second_frame>  L  G  R  S  *  *  L  T  P  Q  N  L  P  M  *  S  L  Q  E  N  L  *  A  G  I  C  W  S  P  T  C  M  E  S  L  E  L  K  V  *  D  F  *  Q  V  L  N  *  R  *  I  A  I  F  H  L  S  T  S  S  G  T  Y  *  K  M  N  I  A  F  L  G  F  G  G  L  R  K  T  K  E  W  F  N  K  K  M  D  L  G  L  C  W  I  A  M  S  M  T  S  E  G  A  T  Y  T  F  K  K  *  S  F  Y  L  L  L  R  N  V  *  I  K  V  F  F  F  F  N  V  *  V  M  Y  L  *  L  I  R  H  G  L  P  M  Q  C  V  L  K  F  I  I  C  M  K  *  Y  I  E  C  F  C  L  L  I  S  *  N :   E  R  E  I  D  K  R  *  A  R  E  T  W </second_frame>
            <third_frame>   W  A  G  A  N  D  *  H  H  K  I  S  L  C  E  A  S  R  R  T  C  E  L  A  F  A  G  A  L  L  A  W  S  R  W  N  S  R  F  R  T  F  S  R  F  *  T  R  G  E  S  R  Y  F  T  C  Q  Q  A  V  G  R  I  E  R  *  I  L  H  S  W  A  L  V  G  *  E  K  Q  R  N  G  S  T  R  R  W  I  L  A  Y  V  G  S  R  *  V  *  L  L  R  E  L  P  T  L  L  K  S  D  H  F  I  Y  F  *  E  M  F  E  *  K  F  F  F  F  L  M  Y  E  L  C  I  S  S  *  L  G  M  A  Y  L  C  S  V  Y  S  N  L  L  Y  A  *  N  N  I  L  N  V  F  V  C  L  *  A  K   : M  R  E  R  L  T  K  D  K  Q  E  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42935" stop="42633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGQELMIDTTKSPYVKPPGEPVSWHLLEPYLHGVAGTQGLGLLAGFKLEVNRDISLVNKQWDVLKDEYCIPGLWWVEKNKGMVQQEDGSWLMLDRDEYDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="40802" PGL_stop="42935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40802" e_stop="40816"/>
            <exon e_start="42434" e_stop="42935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="40802" e_stop="40816" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40817" i_stop="42433" i_length="1617"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42434" e_stop="42935" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40802" stop="40816"/>
              <exon start="42434" stop="42935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544834" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGCTTATCTTTT : TTTTTAGCTTATAAGCAAACAAAAACATTCAATATATTATTTCATGCATATAATAAATTTGAGTACACACTGCATAGGTAAGCCATGCCTAATCAACTAGAGATACATAACTCATACATTAAAAAAAAAAAAAACTTTTATTCAAACATTTCTTAAAAGTAAATAAAATGATCACTTTTTAAAAGTGTAGGTAGCTCCCTCAGAAGTCATACTCATCGCGATCCAACATAAGCCAAGATCCATCTTCTTGTTGAACCATTCCTTTGTTTTTCTCAACCCACCAAAGCCCAGGAATGCAATATTCATCTTTCAATACGTCCCACTGCTTGTTGACAAGTGAAATATCGCGATTCACCTCTAGTTTAAAACCTGCTAAAAGTCCTAAACCTTGAGTTCCAGCGACTCCATGCAAGTAGGGCTCCAGCAAATGCCAGCTCACAGGTTCTCCTGGAGGCTTCACATAGGGAGATTTTGTGGTGTCAATCATTAGCTCCTGCCCAAC</gDNA_template>
            <first_frame> S  C  L  S  F  :  F  L  A  Y  K  Q  T  K  T  F  N  I  L  F  H  A  Y  N  K  F  E  Y  T  L  H  R  *  A  M  P  N  Q  L  E  I  H  N  S  Y  I  K  K  K  K  N  F  Y  S  N  I  S  *  K  *  I  K  *  S  L  F  K  S  V  G  S  S  L  R  S  H  T  H  R  D  P  T  *  A  K  I  H  L  L  V  E  P  F  L  C  F  S  Q  P  T  K  A  Q  E  C  N  I  H  L  S  I  R  P  T  A  C  *  Q  V  K  Y  R  D  S  P  L  V  *  N  L  L  K  V  L  N  L  E  F  Q  R  L  H  A  S  R  A  P  A  N  A  S  S  Q  V  L  L  E  A  S  H  R  E  I  L  W  C  Q  S  L  A  P  A  Q  </first_frame>
            <second_frame>  L  A  Y  L  F :   F  *  L  I  S  K  Q  K  H  S  I  Y  Y  F  M  H  I  I  N  L  S  T  H  C  I  G  K  P  C  L  I  N  *  R  Y  I  T  H  T  L  K  K  K  K  T  F  I  Q  T  F  L  K  S  K  *  N  D  H  F  L  K  V  *  V  A  P  S  E  V  I  L  I  A  I  Q  H  K  P  R  S  I  F  L  L  N  H  S  F  V  F  L  N  P  P  K  P  R  N  A  I  F  I  F  Q  Y  V  P  L  L  V  D  K  *  N  I  A  I  H  L  *  F  K  T  C  *  K  S  *  T  L  S  S  S  D  S  M  Q  V  G  L  Q  Q  M  P  A  H  R  F  S  W  R  L  H  I  G  R  F  C  G  V  N  H  *  L  L  P  N </second_frame>
            <third_frame>   L  L  I  F   : F  F  S  L  *  A  N  K  N  I  Q  Y  I  I  S  C  I  *  *  I  *  V  H  T  A  *  V  S  H  A  *  S  T  R  D  T  *  L  I  H  *  K  K  K  K  L  L  F  K  H  F  L  K  V  N  K  M  I  T  F  *  K  C  R  *  L  P  Q  K  S  Y  S  S  R  S  N  I  S  Q  D  P  S  S  C  *  T  I  P  L  F  F  S  T  H  Q  S  P  G  M  Q  Y  S  S  F  N  T  S  H  C  L  L  T  S  E  I  S  R  F  T  S  S  L  K  P  A  K  S  P  K  P  *  V  P  A  T  P  C  K  *  G  S  S  K  C  Q  L  T  G  S  P  G  G  F  T  *  G  D  F  V  V  S  I  I  S  S  C  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0209I20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="43910" PGL_stop="43098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43910" e_stop="43315"/>
            <exon e_start="43238" e_stop="43098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43910" e_stop="43315" e_length="596"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43314" i_stop="43239" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43238" e_stop="43098" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43910" stop="43359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43906" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43892" stop="43349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43749" stop="43315"/>
              <exon start="43238" stop="43098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43716" stop="43315"/>
              <exon start="43238" stop="43125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAGAGAGGAGTAATATGGCTGAGAAATGGGAGGAACTTAGTGGTAAAAACAATTGGGAAGGTCTATTACACCCCTTGGATGTTGATCTTCGTAAATACATCATTCATTACGGAGAATTGGCTCAAGCAACTTATGACACTTTCATTACAGAAAGAGCGTCTAAATATGCAGGTGCTAGCAGATACTCAATGGAAAATCTTTTTACTAAGGTCGGACTTGACCCAAACAAGTATCGTGTGACCAAATTTTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTTTCATCGTGAAATCATTGTCAAGGGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTGGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTGATTGCTTGGAGAGGAACTATGCAGAAGCTGGAGTGGGTTAATGATCTTCAATTTTTACTTGTGCCAGCACCCCAAGTATTTGGTGATGGAGGTTTGCTTCCTTTGTTTCAACCTTTGGTGCATCATGGCTTTTACAATGCTTATACATCATCGAGTTCACGATCACAGTTTAATCTGACTAGTGCCAGAGATCAG : GTAATTGAAGAAGTGAAAAGATTGGTGGAGGAATATAAGCATGAAGAGGTGAGTATAACTGTGACTGGACACAGCCTAGGTGCATCACTTGCAACTCTAAATGCAGTTGACATAGCTTTCAATGGAATCAATAAAACAAGT</gDNA_template>
            <first_frame> E  K  R  G  V  I  W  L  R  N  G  R  N  L  V  V  K  T  I  G  K  V  Y  Y  T  P  W  M  L  I  F  V  N  T  S  F  I  T  E  N  W  L  K  Q  L  M  T  L  S  L  Q  K  E  R  L  N  M  Q  V  L  A  D  T  Q  W  K  I  F  L  L  R  S  D  L  T  Q  T  S  I  V  *  P  N  F  S  M  L  L  H  P  F  H  F  L  M  V  S  S  *  N  H  C  Q  G  K  H  G  V  R  N  Q  I  L  W  D  I  L  L  W  L  L  M  R  V  K  F  H  *  E  E  G  I  L  *  L  L  G  E  E  L  C  R  S  W  S  G  L  M  I  F  N  F  Y  L  C  Q  H  P  K  Y  L  V  M  E  V  C  F  L  C  F  N  L  W  C  I  M  A  F  T  M  L  I  H  H  R  V  H  D  H  S  L  I  *  L  V  P  E  I  R :   *  L  K  K  *  K  D  W  W  R  N  I  S  M  K  R  *  V  *  L  *  L  D  T  A  *  V  H  H  L  Q  L  *  M  Q  L  T  *  L  S  M  E  S  I  K  Q   </first_frame>
            <second_frame>  K  R  E  E  *  Y  G  *  E  M  G  G  T  *  W  *  K  Q  L  G  R  S  I  T  P  L  G  C  *  S  S  *  I  H  H  S  L  R  R  I  G  S  S  N  L  *  H  F  H  Y  R  K  S  V  *  I  C  R  C  *  Q  I  L  N  G  K  S  F  Y  *  G  R  T  *  P  K  Q  V  S  C  D  Q  I  F  L  C  Y  C  I  H  S  T  S  *  W  F  H  R  E  I  I  V  K  G  S  M  E  *  G  I  K  F  Y  G  I  Y  C  C  G  Y  *  *  G  *  S  F  T  R  K  K  G  Y  C  D  C  L  E  R  N  Y  A  E  A  G  V  G  *  *  S  S  I  F  T  C  A  S  T  P  S  I  W  *  W  R  F  A  S  F  V  S  T  F  G  A  S  W  L  L  Q  C  L  Y  I  I  E  F  T  I  T  V  *  S  D  *  C  Q  R  S   : G  N  *  R  S  E  K  I  G  G  G  I  *  A  *  R  G  E  Y  N  C  D  W  T  Q  P  R  C  I  T  C  N  S  K  C  S  *  H  S  F  Q  W  N  Q  *  N  K  </second_frame>
            <third_frame>   K  E  R  S  N  M  A  E  K  W  E  E  L  S  G  K  N  N  W  E  G  L  L  H  P  L  D  V  D  L  R  K  Y  I  I  H  Y  G  E  L  A  Q  A  T  Y  D  T  F  I  T  E  R  A  S  K  Y  A  G  A  S  R  Y  S  M  E  N  L  F  T  K  V  G  L  D  P  N  K  Y  R  V  T  K  F  F  Y  A  T  A  S  I  P  L  P  D  G  F  I  V  K  S  L  S  R  E  A  W  S  K  E  S  N  F  M  G  Y  I  A  V  A  T  D  E  G  K  V  S  L  G  R  R  D  I  V  I  A  W  R  G  T  M  Q  K  L  E  W  V  N  D  L  Q  F  L  L  V  P  A  P  Q  V  F  G  D  G  G  L  L  P  L  F  Q  P  L  V  H  H  G  F  Y  N  A  Y  T  S  S  S  S  R  S  Q  F  N  L  T  S  A  R  D  Q  :  V  I  E  E  V  K  R  L  V  E  E  Y  K  H  E  E  V  S  I  T  V  T  G  H  S  L  G  A  S  L  A  T  L  N  A  V  D  I  A  F  N  G  I  N  K  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43908" stop="43315"/>
                    <exon start="43238" stop="43098"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KERSNMAEKWEELSGKNNWEGLLHPLDVDLRKYIIHYGELAQATYDTFITERASKYAGASRYSMENLFTKVGLDPNKYRVTKFFYATASIPLPDGFIVKSLSREAWSKESNFMGYIAVATDEGKVSLGRRDIVIAWRGTMQKLEWVNDLQFLLVPAPQVFGDGGLLPLFQPLVHHGFYNAYTSSSSRSQFNLTSARDQVIEEVKRLVEEYKHEEVSITVTGHSLGASLATLNAVDIAFNGINKTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49452" PGL_stop="48062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49452" e_stop="48930"/>
            <exon e_start="48850" e_stop="48062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49452" e_stop="48930" e_length="523"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="48929" i_stop="48851" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="48850" e_stop="48062" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49452" stop="49250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49451" stop="48930"/>
              <exon start="48850" stop="48827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48970" stop="48930"/>
              <exon start="48850" stop="48062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAACCCCTTGGATCTTGATCTTCGTAAATATATCATTCAATACGGAGAATTGGCTCAAGCAATCAATGACACTTTCATTACAGAAAAAGCGTCTAAATATGCAGGAGCTAGCAGATACTCTATGGAAAACCTTTTTACTAAAGTTGGACTTGACCCAACCAAGTATCGTGTAACCAAATATTTCTATGCTACTGCATCCATTCCACTTCCTGATGGTGTTTTCTTCGTGAAATCATTGTCAAGAGAAGCATGGAGTAAGGAATCAAATTTTATGGGATATATTGCTGTAGCTACTGATGAGGGTAAAGTTTCACTAGGAAGAAGGGATATTGTTATTAATTGGAGAGGAAGTATGCAAACATTGGAGTGGGTGAATGACCTTCAATTTGTACTTGTTCCAGCACCAGAAGTATTTGGTGATGGAGGCTTGCTTCAACCTTTGGTGCATCAGGGCTTCTATAATGTCTATACAGCATCCAGTTCAAGATCACAGTTTAATGTGACTAGTGCCAGAGATCAG : GTAATGGAAGAAGTGAAAAGATTGGTTGAGGAATATAAGAATGAAGAGGTGAGCATAACTGTGACGGGACACAGCCTGGGTGCATCACTTGCAACTCTGAATGCAGTTGACATAGCTTTCAATAAAATCAACAAAGCAAGTAATGGCAAAGAGTTCCCAGTCACTGCTTTTCCATTCGCATGTCCTAAAGTTGGAGATCTCCAATTTAAGGCAGCATTTGACAAAATAATAGGGCTTCGTATCTTGAGAATTGATAACTTATTGGATATTGCTCCGAAATACCCACCTATTGGATACTTTGACGTTGGGCAGGAGCTAATGATTGACACCACAAAATCTCCCTATGTGAAACCTCCAGGACAACCTGTGAACTGGCATTCGCTGGAGTCATACTTGCATGGAATCGCTGGAACTCAAGGTACGGGGCTTTTAGCGGGTTTTAATTTAGAGGTGAATCGTGATATCTCACTTATCAACAAGCAGTTGGACGGATTGAAAGATGAATATTGCATTCCTGTGAATTGGTGGGTTGAGAAAAACAAAGGAATGGTTCAACAAGAAGATGGATCTTGGCTTCTCTTGGATCGCGATGATTATGACTTCTGATGGAGCTACCAACACTTTTAAAAAAACTATCATTTTATTTCCTTTCATCAAATGTTTTTTTTATTATTATTATTGTTTTATGTATGACTGATGTATCTCTAGTTGATTGGGCATGGCTTTCCTATGTAATTTATATGCATGTGTAATAAAATATTGAATGTTTTTGTTTGCTTACAAGCTAAA</gDNA_template>
            <first_frame> I  K  P  L  G  S  *  S  S  *  I  Y  H  S  I  R  R  I  G  S  S  N  Q  *  H  F  H  Y  R  K  S  V  *  I  C  R  S  *  Q  I  L  Y  G  K  P  F  Y  *  S  W  T  *  P  N  Q  V  S  C  N  Q  I  F  L  C  Y  C  I  H  S  T  S  *  W  C  F  L  R  E  I  I  V  K  R  S  M  E  *  G  I  K  F  Y  G  I  Y  C  C  S  Y  *  *  G  *  S  F  T  R  K  K  G  Y  C  Y  *  L  E  R  K  Y  A  N  I  G  V  G  E  *  P  S  I  C  T  C  S  S  T  R  S  I  W  *  W  R  L  A  S  T  F  G  A  S  G  L  L  *  C  L  Y  S  I  Q  F  K  I  T  V  *  C  D  *  C  Q  R  S   : G  N  G  R  S  E  K  I  G  *  G  I  *  E  *  R  G  E  H  N  C  D  G  T  Q  P  G  C  I  T  C  N  S  E  C  S  *  H  S  F  Q  *  N  Q  Q  S  K  *  W  Q  R  V  P  S  H  C  F  S  I  R  M  S  *  S  W  R  S  P  I  *  G  S  I  *  Q  N  N  R  A  S  Y  L  E  N  *  *  L  I  G  Y  C  S  E  I  P  T  Y  W  I  L  *  R  W  A  G  A  N  D  *  H  H  K  I  S  L  C  E  T  S  R  T  T  C  E  L  A  F  A  G  V  I  L  A  W  N  R  W  N  S  R  Y  G  A  F  S  G  F  *  F  R  G  E  S  *  Y  L  T  Y  Q  Q  A  V  G  R  I  E  R  *  I  L  H  S  C  E  L  V  G  *  E  K  Q  R  N  G  S  T  R  R  W  I  L  A  S  L  G  S  R  *  L  *  L  L  M  E  L  P  T  L  L  K  K  L  S  F  Y  F  L  S  S  N  V  F  F  I  I  I  I  V  L  C  M  T  D  V  S  L  V  D  W  A  W  L  S  Y  V  I  Y  M  H  V  *  *  N  I  E  C  F  C  L  L  T  S  *  </first_frame>
            <second_frame>  L  N  P  L  D  L  D  L  R  K  Y  I  I  Q  Y  G  E  L  A  Q  A  I  N  D  T  F  I  T  E  K  A  S  K  Y  A  G  A  S  R  Y  S  M  E  N  L  F  T  K  V  G  L  D  P  T  K  Y  R  V  T  K  Y  F  Y  A  T  A  S  I  P  L  P  D  G  V  F  F  V  K  S  L  S  R  E  A  W  S  K  E  S  N  F  M  G  Y  I  A  V  A  T  D  E  G  K  V  S  L  G  R  R  D  I  V  I  N  W  R  G  S  M  Q  T  L  E  W  V  N  D  L  Q  F  V  L  V  P  A  P  E  V  F  G  D  G  G  L  L  Q  P  L  V  H  Q  G  F  Y  N  V  Y  T  A  S  S  S  R  S  Q  F  N  V  T  S  A  R  D  Q  :  V  M  E  E  V  K  R  L  V  E  E  Y  K  N  E  E  V  S  I  T  V  T  G  H  S  L  G  A  S  L  A  T  L  N  A  V  D  I  A  F  N  K  I  N  K  A  S  N  G  K  E  F  P  V  T  A  F  P  F  A  C  P  K  V  G  D  L  Q  F  K  A  A  F  D  K  I  I  G  L  R  I  L  R  I  D  N  L  L  D  I  A  P  K  Y  P  P  I  G  Y  F  D  V  G  Q  E  L  M  I  D  T  T  K  S  P  Y  V  K  P  P  G  Q  P  V  N  W  H  S  L  E  S  Y  L  H  G  I  A  G  T  Q  G  T  G  L  L  A  G  F  N  L  E  V  N  R  D  I  S  L  I  N  K  Q  L  D  G  L  K  D  E  Y  C  I  P  V  N  W  W  V  E  K  N  K  G  M  V  Q  Q  E  D  G  S  W  L  L  L  D  R  D  D  Y  D  F  *  W  S  Y  Q  H  F  *  K  N  Y  H  F  I  S  F  H  Q  M  F  F  L  L  L  L  L  F  Y  V  *  L  M  Y  L  *  L  I  G  H  G  F  P  M  *  F  I  C  M  C  N  K  I  L  N  V  F  V  C  L  Q  A  K </second_frame>
            <third_frame>   *  T  P  W  I  L  I  F  V  N  I  S  F  N  T  E  N  W  L  K  Q  S  M  T  L  S  L  Q  K  K  R  L  N  M  Q  E  L  A  D  T  L  W  K  T  F  L  L  K  L  D  L  T  Q  P  S  I  V  *  P  N  I  S  M  L  L  H  P  F  H  F  L  M  V  F  S  S  *  N  H  C  Q  E  K  H  G  V  R  N  Q  I  L  W  D  I  L  L  *  L  L  M  R  V  K  F  H  *  E  E  G  I  L  L  L  I  G  E  E  V  C  K  H  W  S  G  *  M  T  F  N  L  Y  L  F  Q  H  Q  K  Y  L  V  M  E  A  C  F  N  L  W  C  I  R  A  S  I  M  S  I  Q  H  P  V  Q  D  H  S  L  M  *  L  V  P  E  I  R :   *  W  K  K  *  K  D  W  L  R  N  I  R  M  K  R  *  A  *  L  *  R  D  T  A  W  V  H  H  L  Q  L  *  M  Q  L  T  *  L  S  I  K  S  T  K  Q  V  M  A  K  S  S  Q  S  L  L  F  H  S  H  V  L  K  L  E  I  S  N  L  R  Q  H  L  T  K  *  *  G  F  V  S  *  E  L  I  T  Y  W  I  L  L  R  N  T  H  L  L  D  T  L  T  L  G  R  S  *  *  L  T  P  Q  N  L  P  M  *  N  L  Q  D  N  L  *  T  G  I  R  W  S  H  T  C  M  E  S  L  E  L  K  V  R  G  F  *  R  V  L  I  *  R  *  I  V  I  S  H  L  S  T  S  S  W  T  D  *  K  M  N  I  A  F  L  *  I  G  G  L  R  K  T  K  E  W  F  N  K  K  M  D  L  G  F  S  W  I  A  M  I  M  T  S  D  G  A  T  N  T  F  K  K  T  I  I  L  F  P  F  I  K  C  F  F  Y  Y  Y  Y  C  F  M  Y  D  *  C  I  S  S  *  L  G  M  A  F  L  C  N  L  Y  A  C  V  I  K  Y  *  M  F  L  F  A  Y  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49451" stop="48930"/>
                    <exon start="48850" stop="48245"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNPLDLDLRKYIIQYGELAQAINDTFITEKASKYAGASRYSMENLFTKVGLDPTKYRVTKYFYATASIPLPDGVFFVKSLSREAWSKESNFMGYIAVATDEGKVSLGRRDIVINWRGSMQTLEWVNDLQFVLVPAPEVFGDGGLLQPLVHQGFYNVYTASSSRSQFNVTSARDQVMEEVKRLVEEYKNEEVSITVTGHSLGASLATLNAVDIAFNKINKASNGKEFPVTAFPFACPKVGDLQFKAAFDKIIGLRILRIDNLLDIAPKYPPIGYFDVGQELMIDTTKSPYVKPPGQPVNWHSLESYLHGIAGTQGTGLLAGFNLEVNRDISLINKQLDGLKDEYCIPVNWWVEKNKGMVQQEDGSWLLLDRDDYDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53451" PGL_stop="53771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53451" e_stop="53771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="53451" e_stop="53771" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53451" stop="53771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53451" stop="53756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAACATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  H  I  H  L  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  L  Y  T  S  V  Y  K  A  R  E </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  D  Y  T  L  L  C  I  K  R  E   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  T  Y  T  L  M  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  I  I  H  F  C  V  *  S  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0209I20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="55980" PGL_stop="55026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55980" e_stop="55782"/>
            <exon e_start="55707" e_stop="55026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55980" e_stop="55782" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55781" i_stop="55708" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="55707" e_stop="55026" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="55782"/>
              <exon start="55707" stop="55165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55614" stop="55026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTTGCAGATATTACTTCACAAGAGTTTTTGGCTAAATTTACTGGATTAAACATACCTAATTCATATCTTTCACCTTCTCCAATGTCATCAACGGAATTTAAAAAAATTAATGATCTTAGCGATGATTACATGCCGTCTAACTTGGACTGGAGAGAGTCTGGGGCTGTCACTCAAGTGAAACATCAAGGTCGATGTG : GATGTTGCTGGGCGTTTTCTGCAGTTGGATCACTAGAAGGAGCCTACAAAATTGCAACAGGCAACTTGATGGAATTCTCTGAACAGGAACTTCTCGATTGCACCACCAACAATTATGGCTGCAACGGAGGTTTTATGACGAATGCATTCGATTTTATCATAGAAAATGGTGGAATTTCAAGGGAATCAGATTATGAATACCTAGGTCAACAGTACACATGCAGAAGCCAAGAGAAAACAGCAGCAGTGCAAATAAGTAGTTATCAAGTCGTGCCTGAAGGTGAAACATCACTATTACAAGCCGTAACTAAACAGCCAGTGTCCATTGGAATAGCTGCTAGCCAAGATTTACAGTTTTACGCGGGAGGAACTTATGACGGAAACTGTGCCGATCGAATTAACCATGCTGTAACAGCGATAGGATATGGAACTGATGAGGAAGGTCAGAAATATTGGTTGTTGAAGAATTCATGGGGAACAAGTTGGGGTGAGAATGGGTATATGAAAATTATAAGAGATTCTGGGGATCCTTCAGGTCTTTGTGATATCGCAAAGATGTCTTCTTATCCAAACATAGCGTAGCATAGATAAGCAAGCATTTCTTATATGTTGTTGTATTATTAAGAATTGAGGGGAAAAAATATTGATTGTGTACATGCAAAAGCTTTTTGCATGAAGTATTT</gDNA_template>
            <first_frame> E  F  A  D  I  T  S  Q  E  F  L  A  K  F  T  G  L  N  I  P  N  S  Y  L  S  P  S  P  M  S  S  T  E  F  K  K  I  N  D  L  S  D  D  Y  M  P  S  N  L  D  W  R  E  S  G  A  V  T  Q  V  K  H  Q  G  R  C   : G  C  C  W  A  F  S  A  V  G  S  L  E  G  A  Y  K  I  A  T  G  N  L  M  E  F  S  E  Q  E  L  L  D  C  T  T  N  N  Y  G  C  N  G  G  F  M  T  N  A  F  D  F  I  I  E  N  G  G  I  S  R  E  S  D  Y  E  Y  L  G  Q  Q  Y  T  C  R  S  Q  E  K  T  A  A  V  Q  I  S  S  Y  Q  V  V  P  E  G  E  T  S  L  L  Q  A  V  T  K  Q  P  V  S  I  G  I  A  A  S  Q  D  L  Q  F  Y  A  G  G  T  Y  D  G  N  C  A  D  R  I  N  H  A  V  T  A  I  G  Y  G  T  D  E  E  G  Q  K  Y  W  L  L  K  N  S  W  G  T  S  W  G  E  N  G  Y  M  K  I  I  R  D  S  G  D  P  S  G  L  C  D  I  A  K  M  S  S  Y  P  N  I  A  *  H  R  *  A  S  I  S  Y  M  L  L  Y  Y  *  E  L  R  G  K  N  I  D  C  V  H  A  K  A  F  C  M  K  Y   </first_frame>
            <second_frame>  N  L  Q  I  L  L  H  K  S  F  W  L  N  L  L  D  *  T  Y  L  I  H  I  F  H  L  L  Q  C  H  Q  R  N  L  K  K  L  M  I  L  A  M  I  T  C  R  L  T  W  T  G  E  S  L  G  L  S  L  K  *  N  I  K  V  D  V  :  D  V  A  G  R  F  L  Q  L  D  H  *  K  E  P  T  K  L  Q  Q  A  T  *  W  N  S  L  N  R  N  F  S  I  A  P  P  T  I  M  A  A  T  E  V  L  *  R  M  H  S  I  L  S  *  K  M  V  E  F  Q  G  N  Q  I  M  N  T  *  V  N  S  T  H  A  E  A  K  R  K  Q  Q  Q  C  K  *  V  V  I  K  S  C  L  K  V  K  H  H  Y  Y  K  P  *  L  N  S  Q  C  P  L  E  *  L  L  A  K  I  Y  S  F  T  R  E  E  L  M  T  E  T  V  P  I  E  L  T  M  L  *  Q  R  *  D  M  E  L  M  R  K  V  R  N  I  G  C  *  R  I  H  G  E  Q  V  G  V  R  M  G  I  *  K  L  *  E  I  L  G  I  L  Q  V  F  V  I  S  Q  R  C  L  L  I  Q  T  *  R  S  I  D  K  Q  A  F  L  I  C  C  C  I  I  K  N  *  G  E  K  I  L  I  V  Y  M  Q  K  L  F  A  *  S  I  </second_frame>
            <third_frame>   I  C  R  Y  Y  F  T  R  V  F  G  *  I  Y  W  I  K  H  T  *  F  I  S  F  T  F  S  N  V  I  N  G  I  *  K  N  *  *  S  *  R  *  L  H  A  V  *  L  G  L  E  R  V  W  G  C  H  S  S  E  T  S  R  S  M  W :   M  L  L  G  V  F  C  S  W  I  T  R  R  S  L  Q  N  C  N  R  Q  L  D  G  I  L  *  T  G  T  S  R  L  H  H  Q  Q  L  W  L  Q  R  R  F  Y  D  E  C  I  R  F  Y  H  R  K  W  W  N  F  K  G  I  R  L  *  I  P  R  S  T  V  H  M  Q  K  P  R  E  N  S  S  S  A  N  K  *  L  S  S  R  A  *  R  *  N  I  T  I  T  S  R  N  *  T  A  S  V  H  W  N  S  C  *  P  R  F  T  V  L  R  G  R  N  L  *  R  K  L  C  R  S  N  *  P  C  C  N  S  D  R  I  W  N  *  *  G  R  S  E  I  L  V  V  E  E  F  M  G  N  K  L  G  *  E  W  V  Y  E  N  Y  K  R  F  W  G  S  F  R  S  L  *  Y  R  K  D  V  F  L  S  K  H  S  V  A  *  I  S  K  H  F  L  Y  V  V  V  L  L  R  I  E  G  K  K  Y  *  L  C  T  C  K  S  F  L  H  E  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55980" stop="55782"/>
                    <exon start="55707" stop="55127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFADITSQEFLAKFTGLNIPNSYLSPSPMSSTEFKKINDLSDDYMPSNLDWRESGAVTQVKHQGRCGCCWAFSAVGSLEGAYKIATGNLMEFSEQELLDCTTNNYGCNGGFMTNAFDFIIENGGISRESDYEYLGQQYTCRSQEKTAAVQISSYQVVPEGETSLLQAVTKQPVSIGIAASQDLQFYAGGTYDGNCADRINHAVTAIGYGTDEEGQKYWLLKNSWGTSWGENGYMKIIRDSGDPSGLCDIAKMSSYPNIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="64217" PGL_stop="61415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64217" e_stop="64191"/>
            <exon e_start="63903" e_stop="63856"/>
            <exon e_start="63695" e_stop="63570"/>
            <exon e_start="62315" e_stop="62223"/>
            <exon e_start="62003" e_stop="61830"/>
            <exon e_start="61740" e_stop="61415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.794" acc_prob="0.150" e_score="1.000"/>
          <exon-intron don_prob="0.666" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.454" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64217" e_stop="64191" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.794" acc_prob="0.150">
            <gDNA_intron_boundary i_start="64190" i_stop="63904" i_length="287"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63903" e_stop="63856" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.666" acc_prob="0.975">
            <gDNA_intron_boundary i_start="63855" i_stop="63696" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63695" e_stop="63570" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.981">
            <gDNA_intron_boundary i_start="63569" i_stop="62316" i_length="1254"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62315" e_stop="62223" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.539">
            <gDNA_intron_boundary i_start="62222" i_stop="62004" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62003" e_stop="61830" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.454" acc_prob="0.992">
            <gDNA_intron_boundary i_start="61829" i_stop="61741" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="61740" e_stop="61415" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64217" stop="64191"/>
              <exon start="63903" stop="63856"/>
              <exon start="63695" stop="63570"/>
              <exon start="62315" stop="62223"/>
              <exon start="62003" stop="61830"/>
              <exon start="61740" stop="61415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64216" stop="64191"/>
              <exon start="63903" stop="63856"/>
              <exon start="63695" stop="63570"/>
              <exon start="62315" stop="62223"/>
              <exon start="62003" stop="61830"/>
              <exon start="61740" stop="61653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTACTTCCATCTGCCCTTCTCTG : GTTTTACTTGGAGTGGGGGAAACCATCTCTTCACAGTCTTGTCCCAAG : GTACTTCTGTTGAATGGTACTCATGATCGAGAAACTTGTGGCCTTAGTGCTTCTTGCTTTGTGACTGCCATTACCGATGCCTTAAATCGAACTTATGGAGATCCTCATAATTGTCTTAAAAATCCT : CCAAACAAATATATCAACACCCTTTTGGTGCCGAAAAACGGATTAATACCTATGGATAAAGAAAGCCTGGCTTCTCAAGGAATTTTCAATGTG : GTCACGGTGGATTCCTTTCCTGATCCAAAATTGGGTGTGCTTTTTGATCCCAAATCATTGATTCAAGCACTTTCCAATCTGTTGACGGATGCATGAACCTGAATTCTACTATGATTTGTTAAACCTTAATTTATCAGAAATTTTGGAGCTTGTGGCACAGTAGTTTTCGCAACG : GATCTGAAGAGAAACGGGCTGTTTGTGAGAACTTGTAGATCGATAACAATTCAAAGACCTCTGCATTGATTTCAACTCCATGAAGTCCGAAGGAAGAGGGTAAGGCTTCCATAGTTTCACGTTGGCATTGGCTTAGATCTTATTCAGCTCTTACTGGGAAAGAATATCATTGTTCACAATTGAGCTGAAACAAATCTGATGTTTCGTATTTGGGCACGTACAGATCAATGAAATTTTTTCCAACCTCAGTTTGTTTGGAATTGAAGCGTAATGGCTGTTGTACATAATAAAATTTCTTTTCATCAATGGCCTTATTTTATAGGAAA</gDNA_template>
            <first_frame> L  F  T  S  I  C  P  S  L  :  V  L  L  G  V  G  E  T  I  S  S  Q  S  C  P  K  :  V  L  L  L  N  G  T  H  D  R  E  T  C  G  L  S  A  S  C  F  V  T  A  I  T  D  A  L  N  R  T  Y  G  D  P  H  N  C  L  K  N  P  :  P  N  K  Y  I  N  T  L  L  V  P  K  N  G  L  I  P  M  D  K  E  S  L  A  S  Q  G  I  F  N  V  :  V  T  V  D  S  F  P  D  P  K  L  G  V  L  F  D  P  K  S  L  I  Q  A  L  S  N  L  L  T  D  A  *  T  *  I  L  L  *  F  V  K  P  *  F  I  R  N  F  G  A  C  G  T  V  V  F  A  T  :  D  L  K  R  N  G  L  F  V  R  T  C  R  S  I  T  I  Q  R  P  L  H  *  F  Q  L  H  E  V  R  R  K  R  V  R  L  P  *  F  H  V  G  I  G  L  D  L  I  Q  L  L  L  G  K  N  I  I  V  H  N  *  A  E  T  N  L  M  F  R  I  W  A  R  T  D  Q  *  N  F  F  Q  P  Q  F  V  W  N  *  S  V  M  A  V  V  H  N  K  I  S  F  H  Q  W  P  Y  F  I  G   </first_frame>
            <second_frame>  S  L  L  P  S  A  L  L  W :   F  Y  L  E  W  G  K  P  S  L  H  S  L  V  P  R :   Y  F  C  *  M  V  L  M  I  E  K  L  V  A  L  V  L  L  A  L  *  L  P  L  P  M  P  *  I  E  L  M  E  I  L  I  I  V  L  K  I  L :   Q  T  N  I  S  T  P  F  W  C  R  K  T  D  *  Y  L  W  I  K  K  A  W  L  L  K  E  F  S  M  W :   S  R  W  I  P  F  L  I  Q  N  W  V  C  F  L  I  P  N  H  *  F  K  H  F  P  I  C  *  R  M  H  E  P  E  F  Y  Y  D  L  L  N  L  N  L  S  E  I  L  E  L  V  A  Q  *  F  S  Q  R :   I  *  R  E  T  G  C  L  *  E  L  V  D  R  *  Q  F  K  D  L  C  I  D  F  N  S  M  K  S  E  G  R  G  *  G  F  H  S  F  T  L  A  L  A  *  I  L  F  S  S  Y  W  E  R  I  S  L  F  T  I  E  L  K  Q  I  *  C  F  V  F  G  H  V  Q  I  N  E  I  F  S  N  L  S  L  F  G  I  E  A  *  W  L  L  Y  I  I  K  F  L  F  I  N  G  L  I  L  *  E  </second_frame>
            <third_frame>   L  Y  F  H  L  P  F  S   : G  F  T  W  S  G  G  N  H  L  F  T  V  L  S  Q   : G  T  S  V  E  W  Y  S  *  S  R  N  L  W  P  *  C  F  L  L  C  D  C  H  Y  R  C  L  K  S  N  L  W  R  S  S  *  L  S  *  K  S   : S  K  Q  I  Y  Q  H  P  F  G  A  E  K  R  I  N  T  Y  G  *  R  K  P  G  F  S  R  N  F  Q  C   : G  H  G  G  F  L  S  *  S  K  I  G  C  A  F  *  S  Q  I  I  D  S  S  T  F  Q  S  V  D  G  C  M  N  L  N  S  T  M  I  C  *  T  L  I  Y  Q  K  F  W  S  L  W  H  S  S  F  R  N   : G  S  E  E  K  R  A  V  C  E  N  L  *  I  D  N  N  S  K  T  S  A  L  I  S  T  P  *  S  P  K  E  E  G  K  A  S  I  V  S  R  W  H  W  L  R  S  Y  S  A  L  T  G  K  E  Y  H  C  S  Q  L  S  *  N  K  S  D  V  S  Y  L  G  T  Y  R  S  M  K  F  F  P  T  S  V  C  L  E  L  K  R  N  G  C  C  T  *  *  N  F  F  S  S  M  A  L  F  Y  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0209I20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64217" stop="64191"/>
                    <exon start="63903" stop="63856"/>
                    <exon start="63695" stop="63570"/>
                    <exon start="62315" stop="62223"/>
                    <exon start="62003" stop="61908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFTSICPSLVLLGVGETISSQSCPKVLLLNGTHDRETCGLSASCFVTAITDALNRTYGDPHNCLKNPPNKYINTLLVPKNGLIPMDKESLASQGIFNVVTVDSFPDPKLGVLFDPKSLIQALSNLLTDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="67288" PGL_stop="66750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67288" e_stop="66750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67288" e_stop="66750" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67288" stop="66750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATTCATAATATCAGTTTTCAATTGGTCATAAGTGCCTGAAAAGTCATTTGGATGCCTGCTTTTTGTGCTTGCTAATAGTAGGGAATTAAGGAACCTATCCACCTTCTTTGAGATCTTTTTGATCAATTACACGGCTTCTTATAATCCATAATCTTGGGAAGTTTCTATAATTTGCGTTTTGAAGTTATCTTAAACAATGACGGTCAAACGCTAGTGCTAAATGCTAAGAACCATGGCTTGAAAGTTGTTATCAGTGAGTAACTTGCAATATAAATTGAATAGTGTTTTCATCAGCAAGAATTGCAGCTTTCTCAGACCCCACTTTGGGGATTTCACTAGGTATGTTGTTCTTGTTAGAGTAGCACCTTGTAGTTATCTCAGAAGTGATGAAGTTGAATTTCTATAGGAATTTAGGGTGATGATCCTTCTAGAACAAGGCTCTGAACAGTAACTCTCAAAGTTAAAATCTGTTTCCTGTGCTCAAAGTGGTAAATAGTGTTCGTTAAACCATTCAAAATCTCTTTTATTTGTTGATT</gDNA_template>
            <first_frame> A  I  H  N  I  S  F  Q  L  V  I  S  A  *  K  V  I  W  M  P  A  F  C  A  C  *  *  *  G  I  K  E  P  I  H  L  L  *  D  L  F  D  Q  L  H  G  F  L  *  S  I  I  L  G  S  F  Y  N  L  R  F  E  V  I  L  N  N  D  G  Q  T  L  V  L  N  A  K  N  H  G  L  K  V  V  I  S  E  *  L  A  I  *  I  E  *  C  F  H  Q  Q  E  L  Q  L  S  Q  T  P  L  W  G  F  H  *  V  C  C  S  C  *  S  S  T  L  *  L  S  Q  K  *  *  S  *  I  S  I  G  I  *  G  D  D  P  S  R  T  R  L  *  T  V  T  L  K  V  K  I  C  F  L  C  S  K  W  *  I  V  F  V  K  P  F  K  I  S  F  I  C  *   </first_frame>
            <second_frame>  L  F  I  I  S  V  F  N  W  S  *  V  P  E  K  S  F  G  C  L  L  F  V  L  A  N  S  R  E  L  R  N  L  S  T  F  F  E  I  F  L  I  N  Y  T  A  S  Y  N  P  *  S  W  E  V  S  I  I  C  V  L  K  L  S  *  T  M  T  V  K  R  *  C  *  M  L  R  T  M  A  *  K  L  L  S  V  S  N  L  Q  Y  K  L  N  S  V  F  I  S  K  N  C  S  F  L  R  P  H  F  G  D  F  T  R  Y  V  V  L  V  R  V  A  P  C  S  Y  L  R  S  D  E  V  E  F  L  *  E  F  R  V  M  I  L  L  E  Q  G  S  E  Q  *  L  S  K  L  K  S  V  S  C  A  Q  S  G  K  *  C  S  L  N  H  S  K  S  L  L  F  V  D  </second_frame>
            <third_frame>   Y  S  *  Y  Q  F  S  I  G  H  K  C  L  K  S  H  L  D  A  C  F  L  C  L  L  I  V  G  N  *  G  T  Y  P  P  S  L  R  S  F  *  S  I  T  R  L  L  I  I  H  N  L  G  K  F  L  *  F  A  F  *  S  Y  L  K  Q  *  R  S  N  A  S  A  K  C  *  E  P  W  L  E  S  C  Y  Q  *  V  T  C  N  I  N  *  I  V  F  S  S  A  R  I  A  A  F  S  D  P  T  L  G  I  S  L  G  M  L  F  L  L  E  *  H  L  V  V  I  S  E  V  M  K  L  N  F  Y  R  N  L  G  *  *  S  F  *  N  K  A  L  N  S  N  S  Q  S  *  N  L  F  P  V  L  K  V  V  N  S  V  R  *  T  I  Q  N  L  F  Y  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0209I20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 190 chains have been computed
$ 
$ memory statistics:
$ 376432 bytes spliced alignments in total
$ 140 spliced alignments have been stored
$ 2688 bytes was the average size of a spliced alignment
$ 22832 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 205 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:56:12
-->
