<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:03:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703268" ref_strand="+" ref_description="SGN-E703268 [FA21AB05]">
      <seq>cgcaacctgtgtatgtcgcaagcaaaagagtacagagacaatacccctttctctctcttattcttgattacctgcaacactcttcccattattcaaagtcccgtctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaagcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggaactgccctctgctggaacttaattgcttatttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="845" stop="4848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1145" g_stop="1268" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4548" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="850" r_length="726" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E703268" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1145" e_stop="1268"/>
          <exon e_start="3823" e_stop="4548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACCTGTGTATGTCGCAAGCAAAAGAGTACAGAGACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG</genome_strand>
        <mrna_strand>CGCAACCTGTGTATGTCGCAAGCAAAAGAGTACAGAGACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAAGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGAACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708636" ref_strand="+" ref_description="SGN-E708636 [FA36BC06]">
      <seq>cctgtgtatgtcgcaagcaaaagagtacagagacaatacccctttctctctcttattcttgattacctgcaacactcttcccattattcaaagtcccgtctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="850" stop="4845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1150" g_stop="1268" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4545" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="842" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E708636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1150" e_stop="1268"/>
          <exon e_start="3823" e_stop="4545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTGTATGTCGCAAGCAAAAGAGTACAGAGACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTT</genome_strand>
        <mrna_strand>CCTGTGTATGTCGCAAGCAAAAGAGTACAGAGACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308054" ref_strand="+" ref_description="SGN-E308054 [cLEY-14-H19]">
      <seq>gacaatacccctttctctctcttattcttgattacctgcaacactcttcccattattcaaagtcccgtctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="881" stop="4607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1181" g_stop="1268" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4307" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="573" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1181" e_stop="1268"/>
          <exon e_start="3823" e_stop="4307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCT</genome_strand>
        <mrna_strand>GACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301876" ref_strand="+" ref_description="SGN-E301876 [cLEW-25-B15]">
      <seq>acaatacccctttctctctctgattcttgattacctgcaacactcttcccattattcaaagagccgtctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgctgccaactcccatggaggttaaactatggaatgataagcggaaaagagaaatgtaccaaacctttgcagagctctttgctatcataaaggcagccgaagagctcgagaaggcttatgttcacgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcagaactatatcttccacgttgaaagataccggacctagcatagagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="882" stop="4486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1182" g_stop="1268" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4186" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="451" r_length="364" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E301876" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1182" e_stop="1268"/>
          <exon e_start="3823" e_stop="4186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCC</genome_strand>
        <mrna_strand>ACAATACCCCTTTCTCTCTCTGATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGAGCCGTCTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGCTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGAAAAGAGAAATGTACCAAACCTTTGCAGAGCTCTTTGCTATCATAAAGGCAGCCGAAGAGCTCGAGAAGGCTTATGTTCACGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAGAACTATATCTTCCACGTTGAAAGATACCGGACCTAGCATAGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308045" ref_strand="+" ref_description="SGN-E308045 [cLEY-14-B19]">
      <seq>ttctctctcttattcttgattgggtgcggttctctttccattattcaaagtcccgtctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatccttttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatctttcacgttgaaagataccgttcctagcattgagcgattttctgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="893" stop="4490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1193" g_stop="1268" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.743" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4190" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="444" r_length="368" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308045" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1193" e_stop="1268"/>
          <exon e_start="3823" e_stop="4190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCC</genome_strand>
        <mrna_strand>TTCTCTCTCTTATTCTTGATTGGGTGCGGTTCTCTTTCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTTTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTTCACGTTGAAAGATACCGTTCCTAGCATTGAGCGATTTTCTGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730132" ref_strand="+" ref_description="SGN-E730132 [LA23AF11]">
      <seq>caacactcttcccattattcaaagtcccgtctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcaggtgatatgtttgtacatatgtggctgaaattcttgttttttcctacaaaagttatactacatatgatgctttatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="919" stop="4926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1219" g_stop="1268" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4626" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="854" r_length="804" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E730132" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1219" e_stop="1268"/>
          <exon e_start="3823" e_stop="4626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTG-AATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGG</genome_strand>
        <mrna_strand>CAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAAATTCTTG-TTTTTTCCTACAAAAGTTATACTACATATGATGCTTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710069" ref_strand="+" ref_description="SGN-E710069 [FA54AE01]">
      <seq>ctttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcagatccatatatcgtaaggggtccagatacgtagctacaatattaggccaaacagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="949" stop="6554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1249" g_stop="1268" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4548" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="746" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4549" i_stop="6197" i_length="1649">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6198" g_stop="6254" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="803" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E710069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1249" e_stop="1268"/>
          <exon e_start="3823" e_stop="4548"/>
          <exon e_start="6198" e_stop="6254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTTATTTTGGTTATCTTTGGCTTCCCTCATATTTTGAACTTGGGTTAAAGAAGGGTCTGGATTCATAACGATAGTGTCATTGTCTTGCTAATATTCTCAACAAGAGTATTCTAAGAAATTGTTAAATTGAAAGATCTGGTGCTTTCAGTTGATTAGGCAAGCTTTGTGGCAGTTTATTCAAGTCACTCTATGCTTGTGAAATGTGATACAAAAACGTGCTGTCTGATATGTGGTTCAGCTTCCTCAAACTTTAAGCTTTGAAGTATTTTGACAGCAGAATCCGAAATGTCAGTTATCAGCATTAGTATGTGGATAAAACTTTCCTGGTTTATCCTGTATTCTCTTCATCTGCTACTTAGGAGTATTTGCACAACTAGTGTGTGGAATGATGTTAAACTTTTGTCTCGATTTTCAAAGCTTTTGCTAATATATAGTCCCATTGGCAGGACTTCTCCTCCTTCATTATGATGTGATTTACCTCAAAACTTTAATCCATTTCAAGTGTATCTGCATACCAGAAAAGAAGGGATTTTTGCTTCGCGTAATAGTTCAATTTCTGTGTTTGATGAATTGTAACTTGAATATAAAAGAATTTAACTAGAGATTTGAATAATTTGTTTGGGATGGATGCTTTCTCCCTATCTTAGCATTAGTAAATGGATGGGCCGTCCTATCCATCTTATGGTCGTCCATACAGGCTTTGTGTTGGGTATTTGCCCTAATTTCTTAAGTAAATTCGCCATATTTGGCTAGTCTTTTTTTTTTTAGGAAAAAGTTTAGGACTGTATAAATAGGAATTCGTTTCTTCTAACATAGTAGTATTCACAATATAGTTCTTGAGACTTTGAGATTTTTGTTATTGCTTGTGTGAATCTCTTTGTATTCCGAATATTTCTTTGTATATTTTTTATTATTATATTATACAGTGGATTGTTCATTTCCCAAACCACATTAAGTTTGTATCTTATGGTATATTTCTCGTTTGTCTTGTTACTCGTAGTTTCTCCAGGTCTGTTGGTTAGATTTTGCATGACAGCTAATTATTTCGGTTCCAATACTCGGAGCCGTAGGAAACTCATGAAAGTCTGAAACACTTGTTTGAACCTCCAATGATAGGCTTCTGTAGTCCTTTAAAGGCTGGCCAATTATTTTAAATGATCCATACCATTAAACCAGTAAATTAAAGAGCACTTGCAAAGTTTGATTTTACATCAGTTGGTTCTTATCTTTTGATTTAATCTTTTACAAGGTTTTTTTTTTCTATAGTATGACTCAGCCCAAGTATTAATTTCACGACCATTAACTGTGAATTGCAGATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAG</genome_strand>
        <mrna_strand>CTTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202048" ref_strand="+" ref_description="SGN-E202048 [cLEC-7-B10]">
      <seq>tttcaccttcttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="950" stop="4601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1250" g_stop="1268" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3823" g_stop="4301" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="498" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E202048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1250" e_stop="1268"/>
          <exon e_start="3823" e_stop="4301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACCTTCTTCTTTACCGTAAGTCTTTTCTCCTTACTCTTTTTATCTCGTATTTACTCACCAAACTTTATTATTTGTTTCTTCAATTTCTTGAGATATATCTTTCCATGTTGTTAATTTTAGGGTAATTTTTAATATTTTTACTGATCCAATACATATAAACAACAATGGATGTGATTGAATCCGTAGCTAAGGGCTAGATCCGTATCTTTAAGCATGTTTGTTCTAACCAGAGATTTCCAGCTCTATCTCTGTATCATGTTTATGGAGGATTTTAGTATTTAATTAGTAATAATAATATGATCTGTGTAAGAAGGGGCTTTATTTTGTTTGCTCAGATTGCTTTTGAACGATGTTGCTCGGACTCTACAAAATGTCAATGGGTACATGTTGGATCCTTTGAAAATAGTGCTTTTTTGAAGGATAAGATATGGGTGCCGTTGAAGTGTCTGAGCAACATAGGTTTTGATGGATTGTCTTACTCATCCTTACGGCTTACTGCTCTTTTTTTAAATCGGAAGCTCAGATTTTTATTGTTGCATATCCCATTTGGAGGACTATTAGCTCGGGTAATGTATTTTTTCCTTGAAGAAATTTAAGCAGAACCAGATGAAACAAGCATATGAAATATGTATTTTTGAAATGCTGATGTTAAAGATGGATATGTGGAATTGATAAGACAAAATGTATAAAGTAATAATGTAATGCTGAAAGATTGATGAAGATATGTAGAAGGTACAAATTGATCAAGGTGTTCTTATGTTTTACCCATACTCATGGAAAAAATGGAGGAAAAGAGGAGAAATAGAGCTGAATAGAGAAGTAGACTCATATAGCTGGCCCCAAGTAGTGAGTAAGGTGTGCATTAAGTTGATCTTATTTGTATAACAACATTTATCCATATCTCCTTACATGTGCCTGTTTTTTTTACTTGCATTTGGTTCGTGACATCAGATGTATTTGCTTGTGGTTAGGTTTTCCACTATTTTACTACATTGTTTGATTTATTTCAAAATTTCTATTAGTTTTTCTTCTCTCTGGAACTGATTTATAGGATTGTTCTTTCTGTTGACAGTGTAACATTAGGGTAAGAAGTGAGGATGTACCAAAACAGGAGAGGGGAGAAAGTAAAGGGGTAGAAGTGAGGACAGAAAAAGGAATCAGAGAGAGAGAGAAGAGAAAAATAAGAATGAAATATAGGAACAGAGCTAGATCAATTCAATTCAAACATAGTAAGAAAAGGTTATATTTATTGTGTTTTGAACTTCCCAGATCTCACTTACACTGGGTATGTTGTTGTTTGTTGTCTGATGAACTTTTGATAAGTTGGAATTCCCAATGCATTTAAAACTTATCTCTGAAGTCTAATAAGAAGATAATTATAATGTCAGTAGACCAGACTTAAATCTAACCAATTAAGAGAACACAATGGTAAAGGGTACACACTAATCTAAAAAATAGCTAAGCATAATCTCACAGCTAAATGATGAATATTAGTTGGAGAAAGGTCTTTATCTACAATCAGAGATAGAGTTTCAATTGTTTCAGTAGATTTGACCTTTTCAGGACTCCGTACGATATATAAGGCAGTTTTATTTTGTTTAGCTGAAATGAATTTGATATAAGGCTCAAACATGACAGGGGGAATTTTTTTGTTAGTTACTTGTATATGTATACCTTTTCACGATGTTGGACTGTTATTGTTACATTTTCCTCCTTTCACTCTGTTTGTAAAGGATTTAATACTCTTAAACCTTGTGTTGTATTCGGAGGTAAGGCCCAGCCCCCCTTCTTGTATTTGTCTATTGATGTATACACCCCAGATAGCCAGGGATGAAATTATAAAAAATAAATAATCTGACACAGCAATTTGTCTCTACTCATTCCCTTCTTTCGCCCCCCTTCTCCATCTTTCATTTCTCGCTAACTCTCCAATCTTATTTTTGATGAAGACTTATTTTTCTGTCTTCCTCTCGTAGTCTTCTTTCTTTATTTATTTCTCATTTTTTTTCCTGGTTTCAACTTCCTTTCTGTCTTCCTCTTCTGATAAACTGAGATAATTCCATGTAGTTTTAACTCCTGTATTTTCACTTGAGATGCTTTCTGCATGTTAATCAAACTTGACCTCTTGAGGGAACTTTGGGACTAGAAACTATCGGAGAGAAATATAATATCTATTGCTGGGGACGTATTGTCTGTCACCCATTTCTGGGATGGTAACTGTATTTGTCATTATTCGGAATACTGGGATCCCAAATAAATTTGTCTAGGATGTCTATTGAACTGGTCCTTTTCACCTCGCAATGGTGATCTTTTTTTCATTTAGTTTAGTAGACTGACAAATTTATTTTAAGCTATCATATCTGAGGGAAATTCTATATGTGCTGTTCTTTGAAGTTTGAACTTTTGTGCACTTTTCAATTAAATGAATCTACACTATATCCAATTGGTAAATTCTATTTCCAAATATCTGTATGGAGGTTAGCGCCTACAAGTCTGATCACTGTAATTAAAAGATATTTGTTAGTTGTAGATTGGCATATTGTAACAGTAGGGCATAATGTTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATG</genome_strand>
        <mrna_strand>TTTCACCTTCTTCTTTACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210513" ref_strand="+" ref_description="SGN-E210513 [cLEC-35-H3]">
      <seq>ttctttacctgacaaagactagcatctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagaaaaatgtacgaaaactttgcagaactctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccaactgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaagctgtcaaaaatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3523" stop="4736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3814" g_stop="4436" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E210513" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3814" e_stop="4436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCT</genome_strand>
        <mrna_strand>TTCTTTACCTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAAAAATGTACGAAAACTTTGCAGAACTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAACTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAAGCTGTCAAAAATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697306" ref_strand="+" ref_description="SGN-E697306 [FA02AF06]">
      <seq>caccgctttaccttcttctttacctgacaaagactagcatcttcccgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcctcatacaattctttcatggcggcactgccctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3523" stop="4824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3823" g_stop="4524" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="726" r_length="702" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E697306" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3823" e_stop="4524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTG</genome_strand>
        <mrna_strand>TGACAAAGACTAGCATCTTCCCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCCTCATACAATTCTTTCATGGCGGCACTGCCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728629" ref_strand="+" ref_description="SGN-E728629 [LA18BG05]">
      <seq>cctctttgcgcgtgtcccatcctcttctccaacctttttgacaaaggtcaaaatattgttgccaactcccatggaggttaaactatggaatgataagcgggaaagagaaatgtacgaaaactttgcagagctctttgctataataaaggcaaccgaaaagctcgagaaggcttatgttcgtgacatcatttcaccagctgaatatgaagctgaatgccagaagttgattgctcatttcaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcaggtgatatgtttgtacatatgtggctgaattcttgtttttttcctacaaagtttatactacatatgatgctttatttggtcgaagtgctgattgacgaagattcagannagagtcttgtaatttatggaacttgtgtctggtggtccattttattcaatgaactcagccccagacaagatgcttatttgggttgcatatcttttctttttgttacattaatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3536" stop="5073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3836" g_stop="4773" g_length="938"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="937" r_length="937" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E728629" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3836" e_stop="4773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATA</genome_strand>
        <mrna_strand>CCTCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAAGATTCAGANNAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGG-TCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGGTTGCATATCTTTTCTTTTTGTTACATTAATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728935" ref_strand="+" ref_description="SGN-E728935 [LA19BG05]">
      <seq>aataaaggcaaccgaaaagctcgagaaggcttatgtaacttgacatcatttcaccatctgaatatgaagctgaatgccaaaagttgattgctcattacaaaactttatcttccacgttgaaagataccgtacctagcattgagcgatttcatgacacctacaaaatggattgccctgctgccttaaaccggcttgtgacctctggggtgcctgccactgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttccctttataaacttttaatacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3677" stop="4671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3977" g_stop="4371" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E728935" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3977" e_stop="4371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGT-TCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTC</genome_strand>
        <mrna_strand>AATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTAACTTGACATCATTTCACCATCTGAATATGAAGCTGAATGCCAAAAGTTGATTGCTCATTACAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTTATAAACTTTTAATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371401" ref_strand="-" ref_description="SGN-E371401 [TUS-27-O17]">
      <seq>ctgtggagcaccgtgccgccgctgctacatcatctgcatcctcagcttctgttgtggctgagtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcagatccatatatcgtaaggggtccagatacgtagctacaatattaggccaaacagctaggaatatgtaatgaagctgctgtctcagtccctagctatttactttcattcaaagttaataactacaagacactggtctggaccacttaccatcaacatgttaactatttgtgttccttttgtgagcagctagaggagaagtagatgatcatcaacagtgaaactaattgtactataaaaagtggggagactatcgattaatgcatttgtactactttgtgttttatgtcattctggtcgtctatttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3892" stop="6802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4192" g_stop="4548" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4549" i_stop="6197" i_length="1649">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6198" g_stop="6507" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="667" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E371401" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4192" e_stop="4548"/>
          <exon e_start="6198" e_stop="6507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTTATTTTGGTTATCTTTGGCTTCCCTCATATTTTGAACTTGGGTTAAAGAAGGGTCTGGATTCATAACGATAGTGTCATTGTCTTGCTAATATTCTCAACAAGAGTATTCTAAGAAATTGTTAAATTGAAAGATCTGGTGCTTTCAGTTGATTAGGCAAGCTTTGTGGCAGTTTATTCAAGTCACTCTATGCTTGTGAAATGTGATACAAAAACGTGCTGTCTGATATGTGGTTCAGCTTCCTCAAACTTTAAGCTTTGAAGTATTTTGACAGCAGAATCCGAAATGTCAGTTATCAGCATTAGTATGTGGATAAAACTTTCCTGGTTTATCCTGTATTCTCTTCATCTGCTACTTAGGAGTATTTGCACAACTAGTGTGTGGAATGATGTTAAACTTTTGTCTCGATTTTCAAAGCTTTTGCTAATATATAGTCCCATTGGCAGGACTTCTCCTCCTTCATTATGATGTGATTTACCTCAAAACTTTAATCCATTTCAAGTGTATCTGCATACCAGAAAAGAAGGGATTTTTGCTTCGCGTAATAGTTCAATTTCTGTGTTTGATGAATTGTAACTTGAATATAAAAGAATTTAACTAGAGATTTGAATAATTTGTTTGGGATGGATGCTTTCTCCCTATCTTAGCATTAGTAAATGGATGGGCCGTCCTATCCATCTTATGGTCGTCCATACAGGCTTTGTGTTGGGTATTTGCCCTAATTTCTTAAGTAAATTCGCCATATTTGGCTAGTCTTTTTTTTTTTAGGAAAAAGTTTAGGACTGTATAAATAGGAATTCGTTTCTTCTAACATAGTAGTATTCACAATATAGTTCTTGAGACTTTGAGATTTTTGTTATTGCTTGTGTGAATCTCTTTGTATTCCGAATATTTCTTTGTATATTTTTTATTATTATATTATACAGTGGATTGTTCATTTCCCAAACCACATTAAGTTTGTATCTTATGGTATATTTCTCGTTTGTCTTGTTACTCGTAGTTTCTCCAGGTCTGTTGGTTAGATTTTGCATGACAGCTAATTATTTCGGTTCCAATACTCGGAGCCGTAGGAAACTCATGAAAGTCTGAAACACTTGTTTGAACCTCCAATGATAGGCTTCTGTAGTCCTTTAAAGGCTGGCCAATTATTTTAAATGATCCATACCATTAAACCAGTAAATTAAAGAGCACTTGCAAAGTTTGATTTTACATCAGTTGGTTCTTATCTTTTGATTTAATCTTTTACAAGGTTTTTTTTTTCTATAGTATGACTCAGCCCAAGTATTAATTTCACGACCATTAACTGTGAATTGCAGATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTTTATGTCATTCTGGTCGTCTATTTGATTTGT</genome_strand>
        <mrna_strand>CTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTTTATGTCATTCTGGTCGTCTATTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273301" ref_strand="-" ref_description="SGN-E273301 [cLEM-24-J14]">
      <seq>gtgtgtgcagaacttcatcactgcgatggactctttgaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcagatccatatatcgtaaggggtccagatacgtagctacaatattaggccaaacagctaggaatatgtaatgaagctgctgtctcagtccctagctatttactttcattcaaagttaataactacaagacactggtctggaccacttaccatcaacatgttaactatttgtgttccttttgtgagcagctagaggagaagtagatgatcatcaacagtgaaactaattgtactataaaaagtggggagactatcgattaatgcatttgtactactttgtgttccatgtcattctggtcgtctatttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3953" stop="6802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4253" g_stop="4548" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4549" i_stop="6197" i_length="1649">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6198" g_stop="6507" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="606" r_length="310" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E273301" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4253" e_stop="4548"/>
          <exon e_start="6198" e_stop="6507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTTATTTTGGTTATCTTTGGCTTCCCTCATATTTTGAACTTGGGTTAAAGAAGGGTCTGGATTCATAACGATAGTGTCATTGTCTTGCTAATATTCTCAACAAGAGTATTCTAAGAAATTGTTAAATTGAAAGATCTGGTGCTTTCAGTTGATTAGGCAAGCTTTGTGGCAGTTTATTCAAGTCACTCTATGCTTGTGAAATGTGATACAAAAACGTGCTGTCTGATATGTGGTTCAGCTTCCTCAAACTTTAAGCTTTGAAGTATTTTGACAGCAGAATCCGAAATGTCAGTTATCAGCATTAGTATGTGGATAAAACTTTCCTGGTTTATCCTGTATTCTCTTCATCTGCTACTTAGGAGTATTTGCACAACTAGTGTGTGGAATGATGTTAAACTTTTGTCTCGATTTTCAAAGCTTTTGCTAATATATAGTCCCATTGGCAGGACTTCTCCTCCTTCATTATGATGTGATTTACCTCAAAACTTTAATCCATTTCAAGTGTATCTGCATACCAGAAAAGAAGGGATTTTTGCTTCGCGTAATAGTTCAATTTCTGTGTTTGATGAATTGTAACTTGAATATAAAAGAATTTAACTAGAGATTTGAATAATTTGTTTGGGATGGATGCTTTCTCCCTATCTTAGCATTAGTAAATGGATGGGCCGTCCTATCCATCTTATGGTCGTCCATACAGGCTTTGTGTTGGGTATTTGCCCTAATTTCTTAAGTAAATTCGCCATATTTGGCTAGTCTTTTTTTTTTTAGGAAAAAGTTTAGGACTGTATAAATAGGAATTCGTTTCTTCTAACATAGTAGTATTCACAATATAGTTCTTGAGACTTTGAGATTTTTGTTATTGCTTGTGTGAATCTCTTTGTATTCCGAATATTTCTTTGTATATTTTTTATTATTATATTATACAGTGGATTGTTCATTTCCCAAACCACATTAAGTTTGTATCTTATGGTATATTTCTCGTTTGTCTTGTTACTCGTAGTTTCTCCAGGTCTGTTGGTTAGATTTTGCATGACAGCTAATTATTTCGGTTCCAATACTCGGAGCCGTAGGAAACTCATGAAAGTCTGAAACACTTGTTTGAACCTCCAATGATAGGCTTCTGTAGTCCTTTAAAGGCTGGCCAATTATTTTAAATGATCCATACCATTAAACCAGTAAATTAAAGAGCACTTGCAAAGTTTGATTTTACATCAGTTGGTTCTTATCTTTTGATTTAATCTTTTACAAGGTTTTTTTTTTCTATAGTATGACTCAGCCCAAGTATTAATTTCACGACCATTAACTGTGAATTGCAGATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTTTATGTCATTCTGGTCGTCTATTTGATTTGT</genome_strand>
        <mrna_strand>GTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTCCATGTCATTCTGGTCGTCTATTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544421" ref_strand="+" ref_description="SGN-E544421 [TUS-66-L23](-)">
      <seq>gaagctgaatatgattgctgtagaccaggtccatccccttttgtcagacctatcatcttcccttaataaacttttaatacttccatctgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcaggtgatatgtttgtacatatgtggctgaattcttgtttttttcctacaaagtttatactacatatgatgctttatttggtcgaagtgctgattgacgaggattcagaaaagagtcttgtaatttatggaacttgtgtctggtggttccattttattcaatgaactcagccccagacaagatgcttatttggtttgcatatcttttctttttgttacattaatcatattacaaggaaatattgagctgttagatatgcttttgtaaatttaagtggaaattttgatgtaaaacttagttccatggtattaaatcaactcaagaaatatcacatttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="3989" stop="5185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4289" g_stop="4884" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="607"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E544421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4289" e_stop="4884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTT</genome_strand>
        <mrna_strand>GAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271449" ref_strand="-" ref_description="SGN-E271449 [cLEM-5-N13]">
      <seq>taatacttccatttgattttgaggggaagacaaagatgagagagtggctctcaaggctgtcaaaaatgggagctgcagatgagttgacagaacagcaggcccgtcaactccatttcgatcttgaatcatcatacaattctttcatggcggcactgccctctgctggaacttaattgcttatttcagatccatatatcgtaaggggtccagatacgtagctacaatattaggccaaacagctaggaatatgtaatgaagctgctgtctcagtccctagctatttactttcattcaaagttaataactacaagacactggtctggaccacttaccatcaacatgttaactatttgtgttccttttgtgagcagctagaggagaagtagatgatcatcaacagtgaaactaattgtactataaaaagtggggagactatcgattaatgcatttgtactactttgtgttctatgtcattctggtcgtctatttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="4063" stop="6802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4363" g_stop="4548" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4549" i_stop="6197" i_length="1649">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6198" g_stop="6507" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="496" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E271449" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271449" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4363" e_stop="4548"/>
          <exon e_start="6198" e_stop="6507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTTATTTTGGTTATCTTTGGCTTCCCTCATATTTTGAACTTGGGTTAAAGAAGGGTCTGGATTCATAACGATAGTGTCATTGTCTTGCTAATATTCTCAACAAGAGTATTCTAAGAAATTGTTAAATTGAAAGATCTGGTGCTTTCAGTTGATTAGGCAAGCTTTGTGGCAGTTTATTCAAGTCACTCTATGCTTGTGAAATGTGATACAAAAACGTGCTGTCTGATATGTGGTTCAGCTTCCTCAAACTTTAAGCTTTGAAGTATTTTGACAGCAGAATCCGAAATGTCAGTTATCAGCATTAGTATGTGGATAAAACTTTCCTGGTTTATCCTGTATTCTCTTCATCTGCTACTTAGGAGTATTTGCACAACTAGTGTGTGGAATGATGTTAAACTTTTGTCTCGATTTTCAAAGCTTTTGCTAATATATAGTCCCATTGGCAGGACTTCTCCTCCTTCATTATGATGTGATTTACCTCAAAACTTTAATCCATTTCAAGTGTATCTGCATACCAGAAAAGAAGGGATTTTTGCTTCGCGTAATAGTTCAATTTCTGTGTTTGATGAATTGTAACTTGAATATAAAAGAATTTAACTAGAGATTTGAATAATTTGTTTGGGATGGATGCTTTCTCCCTATCTTAGCATTAGTAAATGGATGGGCCGTCCTATCCATCTTATGGTCGTCCATACAGGCTTTGTGTTGGGTATTTGCCCTAATTTCTTAAGTAAATTCGCCATATTTGGCTAGTCTTTTTTTTTTTAGGAAAAAGTTTAGGACTGTATAAATAGGAATTCGTTTCTTCTAACATAGTAGTATTCACAATATAGTTCTTGAGACTTTGAGATTTTTGTTATTGCTTGTGTGAATCTCTTTGTATTCCGAATATTTCTTTGTATATTTTTTATTATTATATTATACAGTGGATTGTTCATTTCCCAAACCACATTAAGTTTGTATCTTATGGTATATTTCTCGTTTGTCTTGTTACTCGTAGTTTCTCCAGGTCTGTTGGTTAGATTTTGCATGACAGCTAATTATTTCGGTTCCAATACTCGGAGCCGTAGGAAACTCATGAAAGTCTGAAACACTTGTTTGAACCTCCAATGATAGGCTTCTGTAGTCCTTTAAAGGCTGGCCAATTATTTTAAATGATCCATACCATTAAACCAGTAAATTAAAGAGCACTTGCAAAGTTTGATTTTACATCAGTTGGTTCTTATCTTTTGATTTAATCTTTTACAAGGTTTTTTTTTTCTATAGTATGACTCAGCCCAAGTATTAATTTCACGACCATTAACTGTGAATTGCAGATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTTTATGTCATTCTGGTCGTCTATTTGATTTGT</genome_strand>
        <mrna_strand>TAATACTTCCATTTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTCTATGTCATTCTGGTCGTCTATTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265216" ref_strand="+" ref_description="SGN-E265216 [cLEI-2-B12]">
      <seq>gagaaggtattcaagatgtttaatagccaccagcacttgctcgatatatcgtcctcagctcaacgaacacctgataacgagttggatttcattcgtgatgaagagtttgatagcaactctggtgctgataacatggaagctcccaattcaggtgatgacgatcaagctgatccaaaccaacctccaaacaagaagaagcgttatcatcgccacactcagaatcagattcaggaaatggagtccttttacaaggaatgcaatcatccagatgacaagcaaaggaaggaattgggaagaagacttggtttggagccattacaagtgaaattttggttccagaacaagcgtactcagatgaaggctcaacatgagcgatgtgagaacacacagttgaggaatgaaaatgagaagcttcgcgctgagaacataaggtacaaagaagctttgagtaatgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="16003" stop="17307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16303" g_stop="16544" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16545" i_stop="16629" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16630" g_stop="16747" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="360" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16748" i_stop="16908" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16909" g_stop="17007" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="459" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E265216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16303" e_stop="16544"/>
          <exon e_start="16630" e_stop="16747"/>
          <exon e_start="16909" e_stop="17007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGTATTCAAGATGTTTAATAACCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTCGTAAGTAATTTAATTTATATATACTGACAGTACATTTATTAACTATATATAACAATTGTTCCGTTTCTTTTTTGTCATTGTACAGCTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAGGTGAAAAACTCTTTTTTCTTTTCTTGTCTGTAATGTAAAGTTAATATATTTGATGTAAAAAATTGAGATGAATACATTCATTCAATTTATATAGACAGGATGATTGAGGTACGTGTGCTTGAAAACTTTATAATTAGATTGTGATTTTATTGTTGTTACAGGCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCA</genome_strand>
        <mrna_strand>GAGAAGGTATTCAAGATGTTTAATAGCCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTC.....................................................................................CTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAG.................................................................................................................................................................GCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709586" ref_strand="+" ref_description="SGN-E709586 [FA52CA07]">
      <seq>gtggagggccagcagctataggagagatgtcatttgatgagcatcagttgaggattgaaaatgctcgtcttagagatgagattgacaggataactggaatagctggaaagtatgttggtaaatcagcccttggatattctcatcaacttcctcttcctcagcccgaagctcctcgggttctggatcttgcttttgggcctcaatcgggcctgcttggagaaatgtacgctgctggtgaccttctaagaactgctgttacgggccttacagatgctgagaagcccgtggtcattgagcttgctgttactgcaatggaggaacttataaggatggctcaaactgaagagccattatggttgccaagctcaggctctgagactttatgtgagcaagaatatgctcgtattttccctcgaggccttggacctaagccagctacactcaattctgaagcctcacgagaatctgctgttgtgattatgaatcatatcaatttagttgagattttgatggatgtgaaccaatggactactgtttttgctggtctggtgtcaaaagcaatgactcttgaagtcttatcaactggtgtcgcaggaaatcacactggagcattgcaagtgatgacagcagaatttcaagttccatctccacttgttccaactcgggagaactatttcttaagatactgtaaacaacatggtgaagggacttgggtagtggttgatgtttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="16718" stop="18664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17018" g_stop="17097" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17098" i_stop="17519" i_length="422">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17520" g_stop="17957" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="518" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17958" i_stop="18040" i_length="83">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.618" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18041" g_stop="18142" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="620" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18143" i_stop="18251" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18252" g_stop="18364" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="733" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E709586" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17018" e_stop="17097"/>
          <exon e_start="17520" e_stop="17957"/>
          <exon e_start="18041" e_stop="18142"/>
          <exon e_start="18252" e_stop="18364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAGGTAGGAGCATTACTAATTGAAAACCTGCCTCATTTTTCAAGTTATTAATTTTAGTACTTGTGAACACACCGATTATAAATTTTGCCTTTAACGGTTTGGATGAACACTCAATCCTACATAACCCTAAATGTTTTGATAAAGGTGATGCCCCCGACCCATTTTACACCTTTCCGTTCATTCGTCCACAATCCCCTCATCCTTTTAATTTACGTAATACATTTTTCTTTTTAGCCTATAAGAAACAATTTAATTTTGAAATTATAATTTTACCTTTTTAACTTTCCACACAATTAAACATTGTCACTTGTATTAGGACTGAGCAAGAAGATTTTAAAACGGAGTAATAAGAAAATAGTTCACATGAAATGGCATTCAAAGTGACTTGACGGAAATTTTAAGTTATTTTATGTTTTATGATACAGATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTGGTAAGATTTCTAATTTTAATGTGCAACCTTACCTTCCTCGGACGAATACTTTGTGCACATTTTTAACTAATTGTACATTTCAGAACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACAATGGAGCATTGCAAGTGGTATTGTTCAGATTTCACTTAACAATATTTTGTTTGAATTCTTTCCTTCTTTTTTAAACAGATGAAATATACTCTAATTGATTTCCTTTTTTTGATGTTCTAATTTTAGATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCT</genome_strand>
        <mrna_strand>GTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTG...................................................................................AACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACACTGGAGCATTGCAAGTG.............................................................................................................ATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="37415" stop="36008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37115" g_stop="36308" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37115" e_stop="36308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="38074" stop="36826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37774" g_stop="37126" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37774" e_stop="37126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="38073" stop="37089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37773" g_stop="37389" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37773" e_stop="37389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280219" ref_strand="-" ref_description="SGN-E280219 [cLEL-7-N9](-)">
      <seq>gcacgagtccacctctaactttctctcttctcctaattcttcttcaactctctatttttgtaccatttcccctttctctctttctttccatttttcatttctcacattttcccactttggcctcttttcttgatttcaaactttttttttttttgcatggttattacatttttattatgtctagattacttgaagaaagatgatgggcaatgcagcagtaagttgaggaaaagtagtaaccctttcatttctatcagattttatcaagaaaggcgaaggaattggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="45314" stop="44448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45020" g_stop="44749" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44748" i_stop="44625" i_length="124">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44624" g_stop="44608" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="289" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E280219" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280219" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45020" e_stop="44749"/>
          <exon e_start="44624" e_stop="44608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCGTCCACCTCTAACTTTCTCTCTTCTCCTAATTCTTCTTCAACTCTCTATTTTTGTACCATTTCCCATTTTTCTCTTTCTTTCCATTTTTCATTTCTCACATTTTCCCACTTTGGCCTCTTTTCTTGATTTCAAACTTTTTTTTTTTTTGCATGGTTATTACATTTTTATTATGTCTAGATTACTTGAAGAAAGATGATGGGCAATGCAGCAGTAAGTTGAGGAAAAGTAGTAACCCTTTCATTTCTATCAGATTTTATCAAGAAAGGTATTCTACTCAACCCCCAACACACACACAAAAAAAAGATTCAATCTTTATATCATGCAATTTCTATCTGTATGTTGAGAAGGGTAATTAAAGGTCAATTTTTTTTATTTTTTTTTTGGTTTAGGCGAAGGAATTGGTTCT</genome_strand>
        <mrna_strand>GCACGAGTCCACCTCTAACTTTCTCTCTTCTCCTAATTCTTCTTCAACTCTCTATTTTTGTACCATTTCCCCTTTCTCTCTTTCTTTCCATTTTTCATTTCTCACATTTTCCCACTTTGGCCTCTTTTCTTGATTTCAAACTTTTTTTTTTTTTGCATGGTTATTACATTTTTATTATGTCTAGATTACTTGAAGAAAGATGATGGGCAATGCAGCAGTAAGTTGAGGAAAAGTAGTAACCCTTTCATTTCTATCAGATTTTATCAAGAAAG............................................................................................................................GCGAAGGAATTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732041" ref_strand="+" ref_description="SGN-E732041 [LB01AE03]">
      <seq>attcaaaattgtgacattattcctagttcggaccttgagccagtgaaagggtccgtgaagacatatttgggcagaccatggaaggcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagagtgggacggtgattttgcattgaaaacattgtattatggtgagtacatgaacaaaggagctggtgctggaattagtaagagagtaaactggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcagggagcagcatggttaaaatctactggtgtcgcttacactgaaggactctgacaaacttgtttaatttattgattttaattaaggttgtttctaataatgtacaaatgagctgtggctctccggtgtgaattctatcaatcatcactaattgatcaaattagtaataaacttgacaggtattattttaattaaacctatatataagagacttttttatgtgaaaaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="53494" stop="25143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53194" g_stop="52667" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52666" i_stop="52376" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52375" g_stop="52356" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="548" r_length="20" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E732041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53194" e_stop="52667"/>
          <exon e_start="52375" e_stop="52356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAAATTGTGACATTATTCCTAGTTCGGACCTTGAGCCAGTGAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAGGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAGTGGGACGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGAATTAGTAAGAGAGTAAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAGGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGAAGGACTCTGACAAACTTGTTTAATTTATTGATTTTAATTAAGGTTGTTTCTAATAATGTACAAATGAGCTGTGGCTCTCCGGTGTGAATTCTATCAATCATCACTAATTGATCAAATTAGTAATAAACTTGACAGGTATTATTTTAATTAAACCTATATATAAGAGACTTTTTTATGTGTGTTGGTGGTTTCATTACAGTTATTGATTTTGAGTCACCGTGGATATTGCATCATATTAATTTTTTTTTTAAAAAAATGGCATATTATTGTTATTGTCCAACTAGATCTTAAAAAAGGCATATTACTGTCTTTATAATTCAGTAAATATCCCCCCCTTAATTTATTTTTTTGGGACAATGTACAATTTTTTTACAACGTCACGTGATCTGAGAATGTGTCCTACAAATATACTCCATCTGAGAATGAGTCGTACAAGTATATGTCTACCATGTACAAATTACGATGTTCTGACAAAGAAAGGAAACAAAA</genome_strand>
        <mrna_strand>ATTCAAAATTGTGACATTATTCCTAGTTCGGACCTTGAGCCAGTGAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAGGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAGTGGGACGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGAATTAGTAAGAGAGTAAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAGGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGAAGGACTCTGACAAACTTGTTTAATTTATTGATTTTAATTAAGGTTGTTTCTAATAATGTACAAATGAGCTGTGGCTCTCCGGTGTGAATTCTATCAATCATCACTAATTGATCAAATTAGTAATAAACTTGACAGGTATTATTTTAATTAAACCTATATATAAGAGACTTTTTTATGT...................................................................................................................................................................................................................................................................................................GAAAAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216183" ref_strand="+" ref_description="SGN-E216183 [cLEL-13-C3](-)">
      <seq>aggttggtcagagtgggacggtgattttgcattgaaaacattgtattatggtgagtacatgaacaaaggagctggtgctggaattagtaagagagtaacctggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcagggagcagcatggttaaaatctactggtgtcgcttacactgaaggactctgccaaacttgtttaatttattgattttaattaaggttgtttctaataatgcacaaataaggctgtggctctccggtgtgaattctatcaatcatcactaattgatcaaattagtaataaacttggcaggtattattttaattacccctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="53354" stop="52378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53054" g_stop="52690" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="397"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E216183" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53054" e_stop="52690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGGTCAGAGTGGGACGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGAATTAGTAAGAGAGTAAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAGGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGAAGGACTCTGACAAACTTGTTTAATTTATTGATTTTAATTAAGGTTGTTTCTAATAATGTACAAATGA-GCTGTGGCTCTCCGGTGTGAATTCTATCAATCATCACTAATTGATCAAATTAGTAATAAACTTGACAGGTATTATTTTAATTAAACCT</genome_strand>
        <mrna_strand>AGGTTGGTCAGAGTGGGACGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGAATTAGTAAGAGAGTAACCTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAGGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGAAGGACTCTGCCAAACTTGTTTAATTTATTGATTTTAATTAAGGTTGTTTCTAATAATGCACAAATAAGGCTGTGGCTCTCCGGTGTGAATTCTATCAATCATCACTAATTGATCAAATTAGTAATAAACTTGGCAGGTATTATTTTAATTACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306924" ref_strand="+" ref_description="SGN-E306924 [cLEY-11-C22]">
      <seq>gaaaatgttgagattgggaaaaagaagaataatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcagatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcattggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcgcgaaagcccatgagcggacagaaaaacatggttacagcacaaggtcgcgaagatccaaaccaaaatacaggaacttcaatccagaattgtgacattattcctagctcggaccttgcaccaataaaagggtccgtgaagacatatttgggcagaccatggaaagcgtactcgaggacagtgtacatgcagtccaacattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54078" stop="52773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53778" g_stop="53652" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53073" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="581" r_length="454" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E306924" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53778" e_stop="53652"/>
          <exon e_start="53526" e_stop="53073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTAGCAGCCCGAAAGCCCATGAGCGGACAGAGTAACATGGTTACGGCCCAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATTCAAAATTGTGACATTATTCCTAGTTCGGACCTTGAGCCAGTGAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAGGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGG</genome_strand>
        <mrna_strand>GAAAATGTTGAGATTGGGAAAAAGAAGAATAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAATAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309251" ref_strand="+" ref_description="SGN-E309251 [cLEY-22-O1]">
      <seq>gaatataatgcttgtgggtgatggcatgggtgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcaaatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcattggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcgcgaaagcccatgagcggacataaaaacatggttacagcacaaggtcgcgaagatccaaaccaaaatacaggaacttcaatccagaattgtgacattattcctagctcggaccttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54049" stop="52855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53749" g_stop="53652" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53154" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="471" r_length="373" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E309251" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53749" e_stop="53652"/>
          <exon e_start="53526" e_stop="53154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTAGCAGCCCGAAAGCCCATGAGCGGACAGAGTAACATGGTTACGGCCCAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATTCAAAATTGTGACATTATTCCTAGTTCGGACCTTGAGCC</genome_strand>
        <mrna_strand>GAATATAATGCTTGTGGGTGATGGCATGGGTGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAAATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACATAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317644" ref_strand="+" ref_description="SGN-E317644 [cTOB-8-J7]">
      <seq>tggcaacttgaatgttatcgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcagatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcactggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactagcagcccgaaagcccatgagcggacagagtaacatggttacggcccaaggtcgtgatgatccaaaccaaaatacaggaacttcaattcaaaattgtgacattattcctagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54004" stop="52866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53704" g_stop="53652" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53166" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="414" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E317644" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53704" e_stop="53652"/>
          <exon e_start="53526" e_stop="53166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTAGCAGCCCGAAAGCCCATGAGCGGACAGAGTAACATGGTTACGGCCCAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATTCAAAATTGTGACATTATTCCTAGTTC</genome_strand>
        <mrna_strand>TGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTAGCAGCCCGAAAGCCCATGAGCGGACAGAGTAACATGGTTACGGCCCAAGGTCGTGATGATCCAAACCAAAATACAGGAACTTCAATTCAAAATTGTGACATTATTCCTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206074" ref_strand="+" ref_description="SGN-E206074 [cLEC-20-N12]">
      <seq>aaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcagatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcactggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54295" stop="53030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53995" g_stop="53652" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53330" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="541" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E206074" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53995" e_stop="53652"/>
          <exon e_start="53526" e_stop="53330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACT</genome_strand>
        <mrna_strand>AAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208081" ref_strand="+" ref_description="SGN-E208081 [cLEC-34-J15]">
      <seq>ctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54362" stop="53133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54062" g_stop="53652" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53433" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="505" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E208081" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54062" e_stop="53652"/>
          <exon e_start="53526" e_stop="53433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</genome_strand>
        <mrna_strand>CTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204379" ref_strand="+" ref_description="SGN-E204379 [cLEC-13-F5]">
      <seq>ctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54471" stop="53203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54171" g_stop="53652" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53503" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="544" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E204379" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54171" e_stop="53652"/>
          <exon e_start="53526" e_stop="53503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAG</genome_strand>
        <mrna_strand>CTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309644" ref_strand="+" ref_description="SGN-E309644 [cLEY-26-F4]">
      <seq>ttgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54535" stop="53350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54235" g_stop="53652" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53526" g_stop="53513" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="598" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E309644" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54235" e_stop="53652"/>
          <exon e_start="53526" e_stop="53513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTAACAAAGAGGCTTGGATTTTGACATAAAGATGTGTTTTGAAAAATTGATGAAGTTGTATACTTTGTTAAATGCAGCTGCTGTTGGGGAT</genome_strand>
        <mrna_strand>TTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200610" ref_strand="+" ref_description="SGN-E200610 [cLEC-9-M13]">
      <seq>gggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaaaatatnaatgcttggggtgatggcatggatgcaactattatcactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54484" stop="53399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54184" g_stop="53700" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E200610" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54184" e_stop="53700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCA</genome_strand>
        <mrna_strand>GGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAAATATNAATGCTTG-GGGTGATGGCATGGATGCAACTATTATCACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299877" ref_strand="+" ref_description="SGN-E299877 [cLEW-1-M8]">
      <seq>catgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttacttgcattgatggtctaaatggccaggtccggtctattatggagcctatgttgaatgatttagtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaatttataaagaaaatgttgagattgggaaaactaagaagaatttaatgcttgtgggtgatggcatggatgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54490" stop="53414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54190" g_stop="53714" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E299877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54190" e_stop="53714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAAC</genome_strand>
        <mrna_strand>CATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730135" ref_strand="+" ref_description="SGN-E730135 [LA23AG02]">
      <seq>cacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaaaaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="53769" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="841" r_length="824" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E730135" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="53769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAAAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546431" ref_strand="+" ref_description="SGN-E546431 [TUS-69-M17]">
      <seq>ctcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctggaccatccatggtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtgtgatggacacaaaaacagttgatttgttacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaaggagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcacgaaccatgctacttgcattgatgggctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattttaccaacagttactgatgggttgccctcatgggttagtgctaatgatagaagacttttgcaactttctgctaatgccatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="53835" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="790" r_length="758" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E546431" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="53835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGACCATCCATGGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTGTGATGGACACAAAAACAGTTGATTTGTTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGGAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACGAACCATGCTACTTGCATTGATGGGCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTTTACCAACAGTTACTGATGGGTTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCTGCTAATGCCATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731102" ref_strand="+" ref_description="SGN-E731102 [LA26AF02]">
      <seq>tccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="53873" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="747" r_length="720" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E731102" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="53873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339341" ref_strand="+" ref_description="SGN-E339341 [cTOF-4-N6]">
      <seq>tcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacanaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="53925" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="699" r_length="668" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E339341" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="53925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGC</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACANAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728049" ref_strand="+" ref_description="SGN-E728049 [LA16CC01]">
      <seq>ctccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctaataaagctctctatgtgcttctctccttaactgctattgtgggctcagatggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttatccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttagaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctacaagattgtttacagatgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggaccaatcccattttgatgttcattcatgactaagtaacattctcaccaaccatgttacttgaatagatggcctaaatggccaggatccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagctagtgatggattgccctcatgggctagtgctaatgatagaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="53931" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="691" r_length="663" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E728049" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="53931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGG-TCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGAC</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTAATAAAGCTCTCTATGTGCTTCTCTCCTTAACTGCTATTGTGGGCTCAGATGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTATCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAGAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTACAAGATTGTTTACAGATGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGACCAATCCCATTTTGATGTTCATTCATGACTAAGTAACATTCTCACCAACCATGTTACTTGAATAGATGGCCTAAATGGCCAGGATCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGCTAGTGATGGATTGCCCTCATGGGCTAGTGCTAATGATAGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203723" ref_strand="+" ref_description="SGN-E203723 [cLEC-17-G7]">
      <seq>agccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54716" stop="53688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54416" g_stop="53988" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E203723" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54416" e_stop="53988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATA</genome_strand>
        <mrna_strand>AGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301522" ref_strand="+" ref_description="SGN-E301522 [cLEW-23-E20]">
      <seq>acaaagtcatggctacttcctctcaaccattgttggattctggcaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggatccattacaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgcgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="53996" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="613" r_length="597" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E301522" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="53996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTGGATTCTGGCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATCCATTACAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGCGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212715" ref_strand="+" ref_description="SGN-E212715 [cLEC-73-F13]">
      <seq>ccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54866" stop="53703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54566" g_stop="54003" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E212715" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54566" e_stop="54003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTG</genome_strand>
        <mrna_strand>CCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341366" ref_strand="+" ref_description="SGN-E341366 [cTOE-23-M15]">
      <seq>ttttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54030" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="584" r_length="563" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E341366" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307644" ref_strand="+" ref_description="SGN-E307644 [cLEY-16-J7]">
      <seq>attctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54872" stop="53735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54572" g_stop="54035" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E307644" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54572" e_stop="54035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGC</genome_strand>
        <mrna_strand>ATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342850" ref_strand="+" ref_description="SGN-E342850 [cTOF-7-H4]">
      <seq>tattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtcccgtctattatggagcctatgttgaatgatttggtagcaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54036" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="580" r_length="557" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E342850" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCCGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302072" ref_strand="+" ref_description="SGN-E302072 [cLEW-19-G9]">
      <seq>ctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgaattggtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54889" stop="53741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54589" g_stop="54041" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E302072" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54589" e_stop="54041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGC</genome_strand>
        <mrna_strand>CTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAATTGGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308018" ref_strand="+" ref_description="SGN-E308018 [cLEY-14-E2]">
      <seq>atattttcacaaagacaaggctacttcctctcaaccattgttagattctgccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaattcccttgacaactcgcgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54042" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="575" r_length="551" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E308018" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTGCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTCCCTTGACAACTCGCGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308148" ref_strand="+" ref_description="SGN-E308148 [cLEY-14-E12]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54042" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="575" r_length="551" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E308148" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302327" ref_strand="+" ref_description="SGN-E302327 [cLEW-19-L22]">
      <seq>tcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54042" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="582" r_length="551" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E302327" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303002" ref_strand="+" ref_description="SGN-E303002 [cLEW-26-A24]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54042" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="583" r_length="551" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E303002" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338567" ref_strand="+" ref_description="SGN-E338567 [cTOE-15-O19]">
      <seq>gaggtctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54888" stop="53747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54046" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E338567" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTA</genome_strand>
        <mrna_strand>GAGGTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367265" ref_strand="+" ref_description="SGN-E367265 [cLPT-5-D19]">
      <seq>ttttcacaatttcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggcccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54046" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="568" r_length="547" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E367265" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGCCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299882" ref_strand="+" ref_description="SGN-E299882 [cLEW-1-O8]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54046" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="579" r_length="547" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E299882" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306074" ref_strand="+" ref_description="SGN-E306074 [cLEY-13-O1]">
      <seq>attttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54047" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="568" r_length="546" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E306074" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336148" ref_strand="+" ref_description="SGN-E336148 [cTOE-12-M5]">
      <seq>cacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggactcgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54049" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="561" r_length="544" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E336148" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTCGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204683" ref_strand="+" ref_description="SGN-E204683 [cLEC-14-H1]">
      <seq>ttttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54049" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="565" r_length="544" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E204683" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305080" ref_strand="+" ref_description="SGN-E305080 [cLEY-18-C17]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattggcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatgagccagtccggtctattatggagcctatgttgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54050" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="567" r_length="543" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E305080" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTGGCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGAGCCAGTCCGGTCTATTATGGAGCCTATGTTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367636" ref_strand="+" ref_description="SGN-E367636 [cLPT-14-E6]">
      <seq>tccatattttcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaattcccttgacaactcgtattcgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggctttgcataaatcatcgataaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattggttagagctgatggatttgtcaagggattgattaatggactccatgatgggacttgggaacctaacggtccaagcccattgtgatggtcattcatggctaagtagcattctcaccaaccatgtcacttgcatagatggcctaaatggccaggcccggtctattatggagcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54059" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="561" r_length="534" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E367636" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTCCCTTGACAACTCGTATTCGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGCTTTGCATAAATCATCGATAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGGTTAGAGCTGATGGATTTGTCAAGGGATTGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGTCCAAGCCCATTGTGATGGTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTCACTTGCATAGATGGCCTAAATGGCCAGGCCCGGTCTATTATGGAGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201393" ref_strand="+" ref_description="SGN-E201393 [cLEC-4-L11]">
      <seq>ttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttacttgcattgatggtctaaatggccaggtccggtctattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54709" stop="53768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54409" g_stop="54068" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E201393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54409" e_stop="54068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTAT</genome_strand>
        <mrna_strand>TTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307679" ref_strand="+" ref_description="SGN-E307679 [cLEY-16-P18]">
      <seq>tctcactccatattttcacaaggtcatggctgcttcctctcggccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaacggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgtgacttgcatagatggcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54892" stop="53790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54090" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="536" r_length="503" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E307679" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAA</genome_strand>
        <mrna_strand>TTCCTCTCGGCCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAACGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTGACTTGCATAGATGGCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301624" ref_strand="+" ref_description="SGN-E301624 [cLEW-23-G21]">
      <seq>ctcactccatattttcacaagagtcatggctactgcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgagggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54590" g_stop="54091" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="535" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E301624" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54590" e_stop="54091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTA</genome_strand>
        <mrna_strand>CCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGAGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308105" ref_strand="+" ref_description="SGN-E308105 [cLEY-14-E9]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacagtccaagcccattttgatgttcattcatggctcagtagcattctcaccaaccatgttacttgcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54099" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="518" r_length="494" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E308105" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACAGTCCAAGCCCATTTTGATGTTCATTCATGGCTCAGTAGCATTCTCACCAACCATGTTACTTGCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306823" ref_strand="+" ref_description="SGN-E306823 [cLEY-11-O12]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54099" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="515" r_length="494" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E306823" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306075" ref_strand="+" ref_description="SGN-E306075 [cLEY-13-O3]">
      <seq>catggctacttcctctcaaccattgtgagattctcccaagacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54601" g_stop="54100" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E306075" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54601" e_stop="54100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAATTATTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATT</genome_strand>
        <mrna_strand>CATGGCTACTTCCTCTCAACCATTGTGAGATTCTCCCAAGACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367612" ref_strand="+" ref_description="SGN-E367612 [cLPT-14-G19]">
      <seq>ttttcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagctggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54100" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="514" r_length="493" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E367612" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGCTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301617" ref_strand="+" ref_description="SGN-E301617 [cLEW-23-E7]">
      <seq>tcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54601" g_stop="54101" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E301617" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54601" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAATTA-TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336872" ref_strand="+" ref_description="SGN-E336872 [cTOE-5-I6]">
      <seq>tggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54598" g_stop="54101" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E336872" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54598" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTA-TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365930" ref_strand="+" ref_description="SGN-E365930 [cLPT-11-B22]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaagggatagattaatggactccatgatgggacttgngaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54101" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="516" r_length="492" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E365930" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGNGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209392" ref_strand="+" ref_description="SGN-E209392 [cLEC-53-O4]">
      <seq>caaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54101" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="507" r_length="492" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E209392" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312407" ref_strand="+" ref_description="SGN-E312407 [cTOA-5-L24]">
      <seq>tcactccatattttcacaaggtcatggctacttcctcgcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54101" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="523" r_length="492" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E312407" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TTCCTCGCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336381" ref_strand="+" ref_description="SGN-E336381 [cTOE-10-N22]">
      <seq>tcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54101" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="523" r_length="492" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E336381" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336718" ref_strand="+" ref_description="SGN-E336718 [cTOE-5-K2]">
      <seq>atccatagcaaactgaagtctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54101" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="543" r_length="492" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E336718" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297088" ref_strand="+" ref_description="SGN-E297088 [cLEW-2-K6]">
      <seq>caaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgggggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgcagtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaagttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgtgaaaaatacacgagacgatccatttggcgagcaatgtgaatggtccgatcaataatggccacgaacaagtagctctagaagattggttagagttgatggagtcgtcacgggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcgttctcaccaaccatgttagttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54865" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54565" g_stop="54101" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E297088" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54565" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCG-TGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>CAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGGGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGCAGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAAGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTGAAAAATACACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCCGATCAATAATGGCCACGAACAAGTAGCTCTAGAAGATTGGTTAGAGTTGATGGAGTCGTCACGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCGTTCTCACCAACCATGTTAGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309879" ref_strand="+" ref_description="SGN-E309879 [cLEZ-10-C17]">
      <seq>tgcttctcttcttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54827" stop="53801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54527" g_stop="54101" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E309879" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54527" e_stop="54101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TGCTTCTCTTCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729065" ref_strand="+" ref_description="SGN-E729065 [LA19DE01]">
      <seq>tattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatacattaatggactccatggcgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54103" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="513" r_length="490" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E729065" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGC</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATACATTAATGGACTCCATGGCGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304482" ref_strand="+" ref_description="SGN-E304482 [cLEX-12-L14]">
      <seq>atattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54103" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="514" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E304482" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGC</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297365" ref_strand="+" ref_description="SGN-E297365 [cLEW-10-G3]">
      <seq>ctaaagctctctatgtgcttctctccttagctgctattgagggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaagggatagattaatggactccatggtgggactagggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54842" stop="53803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54542" g_stop="54103" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E297365" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54542" e_stop="54103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGC</genome_strand>
        <mrna_strand>CTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGAGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTAGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306834" ref_strand="+" ref_description="SGN-E306834 [cLEY-11-F17]">
      <seq>tcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54104" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="520" r_length="489" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E306834" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305198" ref_strand="+" ref_description="SGN-E305198 [cLEY-18-P4]">
      <seq>aagtcatgactactaattattcctctcaaccattgttgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54911" stop="53807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54611" g_stop="54107" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E305198" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54611" e_stop="54107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCATGACTACTAATTATTCCTCTCAACCATT---GTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTAC</genome_strand>
        <mrna_strand>AAGTCATGACTACTAATTATTCCTCTCAACCATTGTTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297106" ref_strand="+" ref_description="SGN-E297106 [cLEW-2-K9]">
      <seq>acaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagatgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccatgtggatgatcattcatggctaagtaccattctcaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54116" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="493" r_length="477" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E297106" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGATGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATGTGGATGATCATTCATGGCTAAGTACCATTCTCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307486" ref_strand="+" ref_description="SGN-E307486 [cLEY-12-L4]">
      <seq>ctccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54121" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="500" r_length="472" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E307486" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTC</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302386" ref_strand="+" ref_description="SGN-E302386 [cLEW-27-D7]">
      <seq>tccatattttcacaaagtcatggctacttcctctcaaccattggtagattctcccaaaacaaaatcctactcttctacgtaaagctctctatgtgcttgtctccttaactgctattgtgggctcacttggattcatttcaatctgggccatcaatcgtacatcaattgccttgacaactcatgtttgtgatacggcccatgatcagccatcttgcttaaccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgattagctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggacggatcaataatggccaggaacaagtagctctaaaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggaccaagcccattttgatgttcattcatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54133" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="488" r_length="461" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E302386" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTAC-TAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGGTAGATTCTCCCAAAACAAAATCCTACTCTTCTACGTAAAGCTCTCTATGTGCTTGTCTCCTTAACTGCTATTGTGGGCTCACTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTGCCTTGACAACTCATGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAACCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTAGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGACGGATCAATAATGGCCAGGAACAAGTAGCTCTAAAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGACCAAGCCCATTTTGATGTTCATTCATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307109" ref_strand="+" ref_description="SGN-E307109 [cLEY-15-D2]">
      <seq>tcatggctacttcctctcaaccattgttagattctcccaagacaaaatcttccgtggtctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54601" g_stop="54137" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E307109" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54601" e_stop="54137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAATTA-TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCC-TCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATG</genome_strand>
        <mrna_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAGACAAAATCTTCCGTGGTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308206" ref_strand="+" ref_description="SGN-E308206 [cLEY-14-D2]">
      <seq>cacaaagtcatggctacttcctctcaaccatgggtagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagatgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttanagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54137" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="473" r_length="456" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E308206" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATGGGTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGATGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTANAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334905" ref_strand="+" ref_description="SGN-E334905 [cTOE-3-J24]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54137" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="488" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E334905" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307574" ref_strand="+" ref_description="SGN-E307574 [cLEY-16-E15]">
      <seq>tctcactccatatttacacaaggtcatggctacttcctctgaaccattgacagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttacctgctattgtgggctcaactggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagccgatttgctacaaatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagatcgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggcccaagcccattttgatgttcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54138" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="488" r_length="455" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E307574" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCAT</genome_strand>
        <mrna_strand>TTCCTCTGAACCATTGACAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTACCTGCTATTGTGGGCTCAACTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGCCGATTTGCTACAAATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATCGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306261" ref_strand="+" ref_description="SGN-E306261 [cLEY-13-P10]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcaccctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54138" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="477" r_length="456" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E306261" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCA-CCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304617" ref_strand="+" ref_description="SGN-E304617 [cLEX-11-L10]">
      <seq>aagtctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttaaagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54138" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="491" r_length="455" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E304617" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAAAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307461" ref_strand="+" ref_description="SGN-E307461 [cLEY-12-B4]">
      <seq>tcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgcgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagctgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctataagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54601" g_stop="54141" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E307461" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54601" e_stop="54141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAATTA-TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATT</genome_strand>
        <mrna_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGCGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGCTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTATAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337646" ref_strand="+" ref_description="SGN-E337646 [cTOE-11-L16]">
      <seq>actccatattttcacaaggttttggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcatatctccttatctgctattgtgggctcacttggattcatttcaatctgggccataaatcgtacatcaatttccttgacaactcgtgtgagacatacggaccgcgatcaatcttctcgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacacaccgaataacataactcatctctcataatacacaacacgatacacttggctagtcgtgtgaatggtcggatcaataatggccagcaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgagaacctaacggtccaagcccattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54148" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="474" r_length="445" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E337646" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCATATCTCCTTATCTGCTATTGTGGGCTCACTTGGATTCATTTCAATCTGGGCCATAAATCGTACATCAATTTCCTTGACAACTCGTGTGAGACATACGGACCGCGATCAATCTTCTCGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACACACCGAATAACATAACTCATCTCTCATAATACACAACACGATACACTTGGCTAGTCGTGTGAATGGTCGGATCAATAATGGCCAGCAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGAGAACCTAACGGTCCAAGCCCATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358882" ref_strand="+" ref_description="SGN-E358882 [cLHT-24-K17]">
      <seq>tcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctggaccatccatggtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtgtgatggacacaaaaacagttgatttgttacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaaggagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54170" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="454" r_length="423" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E358882" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGACCATCCATGGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTGTGATGGACACAAAAACAGTTGATTTGTTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGGAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335677" ref_strand="+" ref_description="SGN-E335677 [cTOE-8-A20]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgataccgcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagctgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccacgaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54176" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="449" r_length="417" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E335677" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACCGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGCTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCACGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305113" ref_strand="+" ref_description="SGN-E305113 [cLEY-18-B10]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54187" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="427" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E305113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301571" ref_strand="+" ref_description="SGN-E301571 [cLEW-23-L7]">
      <seq>ggaattcggcacgaggctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54887" stop="53892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54587" g_stop="54192" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="412" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E301571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54587" e_stop="54192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACT</genome_strand>
        <mrna_strand>CTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338005" ref_strand="+" ref_description="SGN-E338005 [cTOE-14-E14]">
      <seq>ctcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagctgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54203" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="422" r_length="390" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E338005" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAG</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGCTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336828" ref_strand="+" ref_description="SGN-E336828 [cTOE-5-D22]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54205" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="409" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E336828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGAT</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367564" ref_strand="+" ref_description="SGN-E367564 [cLPT-7-B2]">
      <seq>actccatattgtcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaagttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54236" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="386" r_length="357" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E367564" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAAGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300012" ref_strand="+" ref_description="SGN-E300012 [cLEW-11-L13]">
      <seq>atattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="53963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54263" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="354" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E300012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341209" ref_strand="+" ref_description="SGN-E341209 [cTOE-22-M11]">
      <seq>ttctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgtttaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54871" stop="53963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54571" g_stop="54263" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E341209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54571" e_stop="54263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</genome_strand>
        <mrna_strand>TTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTTAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338803" ref_strand="+" ref_description="SGN-E338803 [cTOE-21-N21]">
      <seq>gttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54877" stop="53971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54577" g_stop="54271" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E338803" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54577" e_stop="54271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGG</genome_strand>
        <mrna_strand>GTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210444" ref_strand="+" ref_description="SGN-E210444 [cLEC-35-O17]">
      <seq>caaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="54012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54312" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="296" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E210444" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAA</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310494" ref_strand="+" ref_description="SGN-E310494 [cTOA-9-G23]">
      <seq>ctcattccactttggtagtaattaagtcatgactactaattattcctctcaaccattgttgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54934" stop="54013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54634" g_stop="54313" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E310494" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54634" e_stop="54313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCCACTTTGGTAGTAATTAAGTCATGACTACTAATTATTCCTCTCAACCA---TTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAA</genome_strand>
        <mrna_strand>CTCATTCCACTTTGGTAGTAATTAAGTCATGACTACTAATTATTCCTCTCAACCATTGTTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208882" ref_strand="+" ref_description="SGN-E208882 [cLEC-51-H7]">
      <seq>agtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgcgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagctgatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="54045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54345" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="260" r_length="248" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E208882" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGC</genome_strand>
        <mrna_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGCGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGCTGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338005" ref_strand="+" ref_description="SGN-E338005 [cTOE-14-E14]">
      <seq>ctcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagctgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61811" stop="62832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62111" g_stop="62532" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E338005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62111" e_stop="62532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAG</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGCTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299836" ref_strand="+" ref_description="SGN-E299836 [cLEW-1-O21]">
      <seq>ctcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgcacatcaatttccttgacaactcgtgttagcgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61811" stop="62710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62111" g_stop="62410" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E299836" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62111" e_stop="62410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAA</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGCACATCAATTTCCTTGACAACTCGTGTTAGCGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321466" ref_strand="+" ref_description="SGN-E321466 [cTOB-23-F3]">
      <seq>ctcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61811" stop="62604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62111" g_stop="62304" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E321466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62111" e_stop="62304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGA</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339341" ref_strand="+" ref_description="SGN-E339341 [cTOF-4-N6]">
      <seq>tcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacanaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61812" stop="63110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62112" g_stop="62810" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E339341" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62112" e_stop="62810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGC</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACANAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367564" ref_strand="+" ref_description="SGN-E367564 [cLPT-7-B2]">
      <seq>actccatattgtcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaagttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61814" stop="62799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62114" g_stop="62499" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E367564" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62114" e_stop="62499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGA</genome_strand>
        <mrna_strand>ACTCCATATTGTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAAGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728049" ref_strand="+" ref_description="SGN-E728049 [LA16CC01]">
      <seq>ctccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctaataaagctctctatgtgcttctctccttaactgctattgtgggctcagatggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttatccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttagaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctacaagattgtttacagatgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggaccaatcccattttgatgttcattcatgactaagtaacattctcaccaaccatgttacttgaatagatggcctaaatggccaggatccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagctagtgatggattgccctcatgggctagtgctaatgatagaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61815" stop="63104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62115" g_stop="62804" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E728049" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62115" e_stop="62804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGG-TCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGAC</genome_strand>
        <mrna_strand>CTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTAATAAAGCTCTCTATGTGCTTCTCTCCTTAACTGCTATTGTGGGCTCAGATGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTATCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAGAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTACAAGATTGTTTACAGATGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGACCAATCCCATTTTGATGTTCATTCATGACTAAGTAACATTCTCACCAACCATGTTACTTGAATAGATGGCCTAAATGGCCAGGATCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGCTAGTGATGGATTGCCCTCATGGGCTAGTGCTAATGATAGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731102" ref_strand="+" ref_description="SGN-E731102 [LA26AF02]">
      <seq>tccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61816" stop="63162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62116" g_stop="62862" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E731102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62116" e_stop="62862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAG</genome_strand>
        <mrna_strand>TCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367636" ref_strand="+" ref_description="SGN-E367636 [cLPT-14-E6]">
      <seq>tccatattttcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaattcccttgacaactcgtattcgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggctttgcataaatcatcgataaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattggttagagctgatggatttgtcaagggattgattaatggactccatgatgggacttgggaacctaacggtccaagcccattgtgatggtcattcatggctaagtagcattctcaccaaccatgtcacttgcatagatggcctaaatggccaggcccggtctattatggagcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61816" stop="62976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62116" g_stop="62676" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E367636" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62116" e_stop="62676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTAT</genome_strand>
        <mrna_strand>TCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTCCCTTGACAACTCGTATTCGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGCTTTGCATAAATCATCGATAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGGTTAGAGCTGATGGATTTGTCAAGGGATTGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGTCCAAGCCCATTGTGATGGTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTCACTTGCATAGATGGCCTAAATGGCCAGGCCCGGTCTATTATGGAGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302386" ref_strand="+" ref_description="SGN-E302386 [cLEW-27-D7]">
      <seq>tccatattttcacaaagtcatggctacttcctctcaaccattggtagattctcccaaaacaaaatcctactcttctacgtaaagctctctatgtgcttgtctccttaactgctattgtgggctcacttggattcatttcaatctgggccatcaatcgtacatcaattgccttgacaactcatgtttgtgatacggcccatgatcagccatcttgcttaaccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgattagctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggacggatcaataatggccaggaacaagtagctctaaaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggaccaagcccattttgatgttcattcatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61816" stop="62902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62116" g_stop="62602" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E302386" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62116" e_stop="62602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTAC-TAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTA</genome_strand>
        <mrna_strand>TCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGGTAGATTCTCCCAAAACAAAATCCTACTCTTCTACGTAAAGCTCTCTATGTGCTTGTCTCCTTAACTGCTATTGTGGGCTCACTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTGCCTTGACAACTCATGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAACCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTAGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGACGGATCAATAATGGCCAGGAACAAGTAGCTCTAAAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGACCAAGCCCATTTTGATGTTCATTCATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308018" ref_strand="+" ref_description="SGN-E308018 [cLEY-14-E2]">
      <seq>atattttcacaaagacaaggctacttcctctcaaccattgttagattctgccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaattcccttgacaactcgcgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61819" stop="62993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62119" g_stop="62693" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308018" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62119" e_stop="62693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</genome_strand>
        <mrna_strand>ATATTTTCACAAAGACAAGGCTACTTCCTCTCAACCATTGTTAGATTCTGCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTCCCTTGACAACTCGCGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308148" ref_strand="+" ref_description="SGN-E308148 [cLEY-14-E12]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61819" stop="62993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62119" g_stop="62693" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62119" e_stop="62693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</genome_strand>
        <mrna_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308105" ref_strand="+" ref_description="SGN-E308105 [cLEY-14-E9]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacagtccaagcccattttgatgttcattcatggctcagtagcattctcaccaaccatgttacttgcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61819" stop="62936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62119" g_stop="62636" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308105" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62119" e_stop="62636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAG</genome_strand>
        <mrna_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACAGTCCAAGCCCATTTTGATGTTCATTCATGGCTCAGTAGCATTCTCACCAACCATGTTACTTGCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365930" ref_strand="+" ref_description="SGN-E365930 [cLPT-11-B22]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaagggatagattaatggactccatgatgggacttgngaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61819" stop="62934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62119" g_stop="62634" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E365930" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62119" e_stop="62634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGNGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342850" ref_strand="+" ref_description="SGN-E342850 [cTOF-7-H4]">
      <seq>tattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtcccgtctattatggagcctatgttgaatgatttggtagcaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61820" stop="62999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62120" g_stop="62699" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E342850" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62120" e_stop="62699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAG</genome_strand>
        <mrna_strand>TATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCCGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729065" ref_strand="+" ref_description="SGN-E729065 [LA19DE01]">
      <seq>tattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatacattaatggactccatggcgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61820" stop="62932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62120" g_stop="62632" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E729065" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62120" e_stop="62632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</genome_strand>
        <mrna_strand>TATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATACATTAATGGACTCCATGGCGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341366" ref_strand="+" ref_description="SGN-E341366 [cTOE-23-M15]">
      <seq>ttttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61822" stop="63005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62705" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E341366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGA</genome_strand>
        <mrna_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367265" ref_strand="+" ref_description="SGN-E367265 [cLPT-5-D19]">
      <seq>ttttcacaatttcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggcccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61822" stop="62989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62689" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E367265" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</genome_strand>
        <mrna_strand>TTTTCACAATTTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGCCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204683" ref_strand="+" ref_description="SGN-E204683 [cLEC-14-H1]">
      <seq>ttttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61822" stop="62986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62686" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E204683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</genome_strand>
        <mrna_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367612" ref_strand="+" ref_description="SGN-E367612 [cLPT-14-G19]">
      <seq>ttttcacaaagtcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagctggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61822" stop="62935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62635" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E367612" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATA</genome_strand>
        <mrna_strand>TTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGCTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730135" ref_strand="+" ref_description="SGN-E730135 [LA23AG02]">
      <seq>cacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaaaaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61826" stop="63266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62126" g_stop="62966" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E730135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62126" e_stop="62966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTG</genome_strand>
        <mrna_strand>CACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAAAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336148" ref_strand="+" ref_description="SGN-E336148 [cTOE-12-M5]">
      <seq>cacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggactcgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61826" stop="62986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62126" g_stop="62686" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E336148" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62126" e_stop="62686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</genome_strand>
        <mrna_strand>CACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTCGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308206" ref_strand="+" ref_description="SGN-E308206 [cLEY-14-D2]">
      <seq>cacaaagtcatggctacttcctctcaaccatgggtagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagatgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttanagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61826" stop="62898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62126" g_stop="62598" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308206" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62126" e_stop="62598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</genome_strand>
        <mrna_strand>CACAAAGTCATGGCTACTTCCTCTCAACCATGGGTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGATGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTANAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301522" ref_strand="+" ref_description="SGN-E301522 [cLEW-23-E20]">
      <seq>acaaagtcatggctacttcctctcaaccattgttggattctggcaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggatccattacaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgcgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61827" stop="63039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62127" g_stop="62739" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E301522" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62127" e_stop="62739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACA</genome_strand>
        <mrna_strand>ACAAAGTCATGGCTACTTCCTCTCAACCATTGTTGGATTCTGGCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATCCATTACAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGCGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209392" ref_strand="+" ref_description="SGN-E209392 [cLEC-53-O4]">
      <seq>caaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61828" stop="62934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62128" g_stop="62634" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E209392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62128" e_stop="62634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>CAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210444" ref_strand="+" ref_description="SGN-E210444 [cLEC-35-O17]">
      <seq>caaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61828" stop="62723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62128" g_stop="62423" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E210444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62128" e_stop="62423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAA</genome_strand>
        <mrna_strand>CAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208882" ref_strand="+" ref_description="SGN-E208882 [cLEC-51-H7]">
      <seq>agtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgcgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagctgatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61831" stop="62690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62131" g_stop="62390" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E208882" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62131" e_stop="62390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGC</genome_strand>
        <mrna_strand>AGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGCGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGCTGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301617" ref_strand="+" ref_description="SGN-E301617 [cLEW-23-E7]">
      <seq>tcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61833" stop="62934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62133" g_stop="62634" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E301617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62133" e_stop="62634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338567" ref_strand="+" ref_description="SGN-E338567 [cTOE-15-O19]">
      <seq>gaggtctcaaccattgttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61847" stop="62989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62143" g_stop="62689" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E338567" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62143" e_stop="62689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</genome_strand>
        <mrna_strand>GAGGTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338803" ref_strand="+" ref_description="SGN-E338803 [cTOE-21-N21]">
      <seq>gttagattctcccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61858" stop="62764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62158" g_stop="62464" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E338803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62158" e_stop="62464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGG</genome_strand>
        <mrna_strand>GTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212715" ref_strand="+" ref_description="SGN-E212715 [cLEC-73-F13]">
      <seq>ccaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61869" stop="63032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62169" g_stop="62732" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E212715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62169" e_stop="62732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTG</genome_strand>
        <mrna_strand>CCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203723" ref_strand="+" ref_description="SGN-E203723 [cLEC-17-G7]">
      <seq>agccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatataaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccacttggcaagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62019" stop="63047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62319" g_stop="62747" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E203723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62319" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATA</genome_strand>
        <mrna_strand>AGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309644" ref_strand="+" ref_description="SGN-E309644 [cLEY-26-F4]">
      <seq>ttgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62200" stop="63385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62500" g_stop="63083" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63222" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="598" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E309644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62500" e_stop="63083"/>
          <exon e_start="63209" e_stop="63222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGAT</genome_strand>
        <mrna_strand>TTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299877" ref_strand="+" ref_description="SGN-E299877 [cLEW-1-M8]">
      <seq>catgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttacttgcattgatggtctaaatggccaggtccggtctattatggagcctatgttgaatgatttagtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaatttataaagaaaatgttgagattgggaaaactaagaagaatttaatgcttgtgggtgatggcatggatgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62245" stop="63321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62545" g_stop="63021" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E299877" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62545" e_stop="63021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAAC</genome_strand>
        <mrna_strand>CATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200610" ref_strand="+" ref_description="SGN-E200610 [cLEC-9-M13]">
      <seq>gggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaaaatatnaatgcttggggtgatggcatggatgcaactattatcactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62251" stop="63335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62551" g_stop="63035" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E200610" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62551" e_stop="63035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATAT-AATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAA</genome_strand>
        <mrna_strand>GGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAA-AATATNAATGCTTG-GGGTGATGGCATGGATGCAACTATTATCACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204379" ref_strand="+" ref_description="SGN-E204379 [cLEC-13-F5]">
      <seq>ctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62264" stop="63532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62564" g_stop="63083" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63232" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="544" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E204379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62564" e_stop="63083"/>
          <exon e_start="63209" e_stop="63232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAG</genome_strand>
        <mrna_strand>CTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208081" ref_strand="+" ref_description="SGN-E208081 [cLEC-34-J15]">
      <seq>ctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62373" stop="63602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62673" g_stop="63083" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63302" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="505" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E208081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62673" e_stop="63083"/>
          <exon e_start="63209" e_stop="63302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</genome_strand>
        <mrna_strand>CTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206074" ref_strand="+" ref_description="SGN-E206074 [cLEC-20-N12]">
      <seq>aaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcagatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcactggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="63705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62740" g_stop="63083" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63405" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="541" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E206074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62740" e_stop="63083"/>
          <exon e_start="63209" e_stop="63405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACT</genome_strand>
        <mrna_strand>AAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306924" ref_strand="+" ref_description="SGN-E306924 [cLEY-11-C22]">
      <seq>gaaaatgttgagattgggaaaaagaagaataatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcagatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcattggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcgcgaaagcccatgagcggacagaaaaacatggttacagcacaaggtcgcgaagatccaaaccaaaatacaggaacttcaatccagaattgtgacattattcctagctcggaccttgcaccaataaaagggtccgtgaagacatatttgggcagaccatggaaagcgtactcgaggacagtgtacatgcagtccaacattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62657" stop="63962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62957" g_stop="63083" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63662" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="581" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306924" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62957" e_stop="63083"/>
          <exon e_start="63209" e_stop="63662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGG</genome_strand>
        <mrna_strand>GAAAATGTTGAGATTGGGAAAAAGAAGAATAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAATAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309251" ref_strand="+" ref_description="SGN-E309251 [cLEY-22-O1]">
      <seq>gaatataatgcttgtgggtgatggcatgggtgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcaaatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcattggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcgcgaaagcccatgagcggacataaaaacatggttacagcacaaggtcgcgaagatccaaaccaaaatacaggaacttcaatccagaattgtgacattattcctagctcggaccttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62686" stop="63881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62986" g_stop="63083" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63581" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="471" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E309251" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62986" e_stop="63083"/>
          <exon e_start="63209" e_stop="63581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACC</genome_strand>
        <mrna_strand>GAATATAATGCTTGTGGGTGATGGCATGGGTGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAAATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACATAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317644" ref_strand="+" ref_description="SGN-E317644 [cTOB-8-J7]">
      <seq>tggcaacttgaatgttatcgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagcagatcagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcactggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactagcagcccgaaagcccatgagcggacagagtaacatggttacggcccaaggtcgtgatgatccaaaccaaaatacaggaacttcaattcaaaattgtgacattattcctagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62731" stop="63869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63031" g_stop="63083" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63569" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="414" r_length="361" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E317644" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63031" e_stop="63083"/>
          <exon e_start="63209" e_stop="63569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTC</genome_strand>
        <mrna_strand>TGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTAGCAGCCCGAAAGCCCATGAGCGGACAGAGTAACATGGTTACGGCCCAAGGTCGTGATGATCCAAACCAAAATACAGGAACTTCAATTCAAAATTGTGACATTATTCCTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733864" ref_strand="+" ref_description="SGN-E733864 [LB11AF03]">
      <seq>ccattagtccgttatcaaccgttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcactggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcccgaaagcccatgagcggacagaaaaacatggttacagcacaaggtcgtgaagatccaaaccaaaatacaggaacttcaatccagaattgcgacattattcctagctcggaccttgcaccagtaaaacggtcggtgaagacatatttgggcagaccatggaaagcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagaatggagcggtgattttgcattgaaaacattgtattatggtgagtacatgaacagaggagctggtgctggaactagtaagagagtgaactggcctggttatcataaagccttgactaaatcagaggccgcgaaattcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttgatttaaaatatgtattgctagtgaagttttagtatgttttggttgcttttttttgtatgcttgttctgtgatgataataataatatgctgctttgttgtggtactgatgactgaaccaggccacaatacgaaggcataaattaaattttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="63005" stop="64366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63303" g_stop="64069" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E733864" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63303" e_stop="64069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAGGCATAAATTAAATTTTTTAAACTT</genome_strand>
        <mrna_strand>CCATTAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCCCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGCGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAACGGTCGGTGAAGACATATTTGGGCAGACCATGGAAAGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGAGCGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAGAGGAGCTGGTGCTGGAACTAGTAAGAGAGTGAACTGGCCTGGTTATCATAAAGCCTTGACTAAATCAGAGGCCGCGAAATTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAGGCATAAATTAAATTTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735194" ref_strand="+" ref_description="SGN-E735194 [LB14CG05]">
      <seq>cacctttgcaaaatggatgcattccaggacactctctatacccacactctccgtcaattctacagagattgttacatcactggcactgtcgattttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcccgaaagcccatgagcggacagaaaaacatggttacagcacaaggtcgtgaagatccaaaccaaaatacaggaacttcaatccagaattgcgacattattcctagctcggaccttgcaccagtaaaacggtcggtgaagacatatttgggcagaccatggaaagcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagaatggagcggtgattttgcattgaaaacattgtattatggtgagtacatgaacagaggagctggtgctggaactagtaagagagtgaactggcctggttatcataaagccttgactaaatcagaggccgcgaaattcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttcatttaaaatatgtattgctagtgaagttttagtatgttttggttgcttttttttgtatgcttgttctgtgatgataataataatatgctgctttgttgtggtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="63020" stop="64315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63319" g_stop="64012" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="716"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E735194" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63319" e_stop="64012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTG</genome_strand>
        <mrna_strand>CACCTTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCCCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGCGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAACGGTCGGTGAAGACATATTTGGGCAGACCATGGAAAGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGAGCGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAGAGGAGCTGGTGCTGGAACTAGTAAGAGAGTGAACTGGCCTGGTTATCATAAAGCCTTGACTAAATCAGAGGCCGCGAAATTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTCATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299837" ref_strand="+" ref_description="SGN-E299837 [cLEW-1-O21](-)">
      <seq>agcccgaaagcccatgagcggacagaaaaacatggttacagcacaaggtcgtgaagatccaaaccaaaatacaggaacttcaatccagaattgcgacattattcctagctcggaccttgcaccagtaaaacggtcggtgaagacatatttgggcagaccatggaaagcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagaatggagcggtgattttgcattgaaaacattgtattatggtgagtacatgaacagaggagctggtgctggaactagtaagagagtgaactggcctggttatcataaagccttgactaaatcagaggccgcgaaattcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttgatttaaaatatgtattgctagtgaagttttagtatgttttggttgcttttttttgtatgcttgttctgtgatgataataataatatgctgctttgttgtggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="63159" stop="64315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63459" g_stop="64024" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E299837" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63459" e_stop="64024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACT</genome_strand>
        <mrna_strand>AGCCCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGCGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAACGGTCGGTGAAGACATATTTGGGCAGACCATGGAAAGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGAGCGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAGAGGAGCTGGTGCTGGAACTAGTAAGAGAGTGAACTGGCCTGGTTATCATAAAGCCTTGACTAAATCAGAGGCCGCGAAATTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372316" ref_strand="+" ref_description="SGN-E372316 [TUS-30-F9](-)">
      <seq>gaccatggaaagcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagaatggagcggtgattttgcattgaaaacattgtattatggtgagtacatgaacagaggagctggtgctggaactagtaagagagtgaactggcctggttatcataaagccttgactaaatcagaggccgcgaaattcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttaccctgatgggttgtgaggaacttgtttgatttaaaatatgtattgctagtgaagttttagtatgttttggttgcttttttttgtatgcttgttctgtgatgataataataatatgctgctttgttgtggtactgatgactgaaccaggcccccaatacgaaggccataaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="63314" stop="64357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63614" g_stop="64045" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="461"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E372316" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63614" e_stop="64045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGG-CCACAATACGAAG</genome_strand>
        <mrna_strand>GACCATGGAAAGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGAGCGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAGAGGAGCTGGTGCTGGAACTAGTAAGAGAGTGAACTGGCCTGGTTATCATAAAGCCTTGACTAAATCAGAGGCCGCGAAATTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACCCTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCCCCAATACGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282990" ref_strand="+" ref_description="SGN-E282990 [cLER-17-I24]">
      <seq>accatggaaagcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagaatggagcggtgattttgcattgaaaacattgtattatggtgagtacatgaacagaggagctggtgctggaactagtaagagagtgaactggcctggttatcataaagccttgactaaatcagaggccgcgaaattcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttgatttaaaatatgtattgctagtgaagttttagtatgttttggttgcttttttttgtatgcttgttctgtgatgataataataatatgctgctttgttgtggtactgatgactgaaccaggccacaatacgaaggcataaattttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="63315" stop="64354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63615" g_stop="64045" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E282990" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63615" e_stop="64045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAG</genome_strand>
        <mrna_strand>ACCATGGAAAGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGAGCGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAGAGGAGCTGGTGCTGGAACTAGTAAGAGAGTGAACTGGCCTGGTTATCATAAAGCCTTGACTAAATCAGAGGCCGCGAAATTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372317" ref_strand="+" ref_description="SGN-E372317 [TUS-30-F9]">
      <seq>accatggaaagcgtattcacggaccgtgtatatgcagtccaacattggagaccatattgatccagcaggttggtcagaatggagcggtgattttgcattgaaaacattgtattatggtgagtacatgaacagaggagctggtgctggaactagtaagagagtgaactggcctggttatcataaagccttgactaaatcagaggccgcgaaattcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttgatttaaaatatgtattgctagtgaagttttagtatgttttggttgcttttttttgtatgcttgttctgtgatgataataataatatgctgctttgttgtggtactgatgactgaaccaggccacaatacgaaggcataaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="63315" stop="64357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63615" g_stop="64045" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="459"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E372317" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63615" e_stop="64045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAG</genome_strand>
        <mrna_strand>ACCATGGAAAGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGAGCGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAGAGGAGCTGGTGCTGGAACTAGTAAGAGAGTGAACTGGCCTGGTTATCATAAAGCCTTGACTAAATCAGAGGCCGCGAAATTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305198" ref_strand="+" ref_description="SGN-E305198 [cLEY-18-P4]">
      <seq>aagtcatgactactaattattcctctcaaccattgttgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="61840" stop="71817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69476" g_stop="69496" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69497" i_stop="71032" i_length="1536">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71033" g_stop="71517" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="508" r_length="488" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E305198" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69476" e_stop="69496"/>
          <exon e_start="71033" e_stop="71517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGAACCAATCATTATATTTCCTTCGTTTTAAAAGAAATGACTATGTTTGACTTGTTATGGAATCTAAGAAAAGAATGAAGACTTTTTAATATTGTAGTTTTTAATTAAAATTATCTCAAATATATCAAAACATCTTTAATCTTATGACCTTAAACATATCACGTAAAACATTAAAGTTAAAAGATTGCATTAATTCTTTTGATTAATTTGCTAAGGTGAACAAATAAAAAGACCAGTTATATATATAGTATATCAATCAAACAAAAGGAATAAAGACAGACAGGTCATTAAAATATCCAAGTTGAAGTTTATTATAAAAGGAAAGAACTGTTATGGATATTGCTCTCTTTTAACTAGAAAAAATTTGTTAAAATACATGGCTATATAGATGATGGTTTGGTCAAATTGATTCTGGTTTTTAATTTCTATATGCTTTAAACAAATGACTCTTTAATGTTTTAAGGGCCAATTGGATCCAATTTAAATATCTTATCTTTGAGCAATAATTCTACTCAACTTATTAGTATAGTTTTACGTAGCTGTTATACTATTACACCGACACTTTATTATGATTTTAAAAAAACAACAACAAGATTTGAGCTTTCTAAATGCTAAGTACTGTGTATGTGTGGAGAAATAATATTTAGTAGGCGCTTGATCATGCGATATATGGTATCGTGAGATAGAATCAGCATTTAGATATGTAATTTCACGCTGATTTCATCTTATGATTTCAAATATGTACTCGTGATATAAAAAGATTATTATATATTCATCTTTAAATATTACTTTCTAACCTGATATAAATTGATTACAACCTGCTATTTATCGGCTAGCATGAGTAATAGTATTTTCAGATAGAGCTTTTCTGTGGGATGTTTTCAGTACTTTTAAGGCTTGAGCGAAAGCTTTTCAACTTATATATACATTATAATATATCCTTTCCCTCCAAAAAAAGAAAAAAAAAAGGAAAGCTTTTCAACTGGTTAATATAGCATCCTTATTTGCCAAACAATTAATGAAATAGTAGTATTGATATACATGTAAAGGATTGAATTCTAAACAATATAACGATATTCTTAGTTCAAGCTATTTATATTTTACTAAGTCTTCGTTGTCGATCATTTCCGTATCAATCTACCCACACATCTAAGACCGTTTGCACTCTACTTCATTATATTTAACTGCTAATATACCTATCGATGAGTTAAATTGAAATGTTATGTCTTTGACCTTATAACAAATTCAATCGTACTATATTTTTGCTGGTTGAGCATAATTAATAATTTAAATAAAAAACTACCTACACTAGCATATGGATTAACCATACCTACTTCGCCATGAAAAGAAACATTGATAATATAATATAATACCTGAATCTTTCCAGACCACCTAATAAAGTAAATTAAAGTAGCTTTATTAAATAATAGTGTTTTAATTTATATATGGAACATTATTGGTGTTTTTTGAGTCTATATAATAAGACGAGAAATGAGAAGATCCATAGCAAACTGAAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCA---TTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTAC</genome_strand>
        <mrna_strand>AAGTCATG-ACTACTAATTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTCAACCATTGTTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336718" ref_strand="+" ref_description="SGN-E336718 [cTOE-5-K2]">
      <seq>atccatagcaaactgaagtctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70681" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70981" g_stop="71523" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E336718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70981" e_stop="71523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATAGCAAACTGAAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>ATCCATAGCAAACTGAAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307181" ref_strand="+" ref_description="SGN-E307181 [cLEY-15-M8]">
      <seq>caaactgatgtctcactccatatttgcacaatgtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgagggctcagttggattcattacaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaagttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70689" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70989" g_stop="71341" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307181" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70989" e_stop="71341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGAAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAAT</genome_strand>
        <mrna_strand>CAAACTGATGTCTCACTCCATATTTGCACAATGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGAGGGCTCAGTTGGATTCATTACAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAAGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304617" ref_strand="+" ref_description="SGN-E304617 [cLEX-11-L10]">
      <seq>aagtctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttaaagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70696" stop="71786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70996" g_stop="71486" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E304617" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70996" e_stop="71486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</genome_strand>
        <mrna_strand>AAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAAAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307679" ref_strand="+" ref_description="SGN-E307679 [cLEY-16-P18]">
      <seq>tctcactccatattttcacaaggtcatggctgcttcctctcggccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaacggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgtgacttgcatagatggcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70699" stop="71834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70999" g_stop="71534" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307679" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70999" e_stop="71534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAA</genome_strand>
        <mrna_strand>TCTCACTCCATATTTTCACAAGGTCATGGCTGCTTCCTCTCGGCCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAACGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTGACTTGCATAGATGGCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307574" ref_strand="+" ref_description="SGN-E307574 [cLEY-16-E15]">
      <seq>tctcactccatatttacacaaggtcatggctacttcctctgaaccattgacagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttacctgctattgtgggctcaactggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagccgatttgctacaaatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagatcgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggcccaagcccattttgatgttcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70699" stop="71786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70999" g_stop="71486" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307574" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70999" e_stop="71486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</genome_strand>
        <mrna_strand>TCTCACTCCATATTTACACAAGGTCATGGCTACTTCCTCTGAACCATTGACAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTACCTGCTATTGTGGGCTCAACTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGCCGATTTGCTACAAATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATCGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546431" ref_strand="+" ref_description="SGN-E546431 [TUS-69-M17]">
      <seq>ctcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctggaccatccatggtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtgtgatggacacaaaaacagttgatttgttacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaaggagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcacgaaccatgctacttgcattgatgggctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattttaccaacagttactgatgggttgccctcatgggttagtgctaatgatagaagacttttgcaactttctgctaatgccatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="72089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71789" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E546431" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTG</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGACCATCCATGGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTGTGATGGACACAAAAACAGTTGATTTGTTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGGAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACGAACCATGCTACTTGCATTGATGGGCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTTTACCAACAGTTACTGATGGGTTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCTGCTAATGCCATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303002" ref_strand="+" ref_description="SGN-E303002 [cLEW-26-A24]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="71882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71582" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E303002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299882" ref_strand="+" ref_description="SGN-E299882 [cLEW-1-O8]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="71878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71578" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E299882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301624" ref_strand="+" ref_description="SGN-E301624 [cLEW-23-G21]">
      <seq>ctcactccatattttcacaagagtcatggctactgcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgagggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="71833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71533" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E301624" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAG-GTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTA</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAGAGTCATGGCTACTGCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGAGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334905" ref_strand="+" ref_description="SGN-E334905 [cTOE-3-J24]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="71787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71487" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E334905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335677" ref_strand="+" ref_description="SGN-E335677 [cTOE-8-A20]">
      <seq>ctcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgataccgcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagctgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccacgaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="71748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71448" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E335677" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGG</genome_strand>
        <mrna_strand>CTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACCGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGCTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCACGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302327" ref_strand="+" ref_description="SGN-E302327 [cLEW-19-L22]">
      <seq>tcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70701" stop="71882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="71582" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E302327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="71582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312407" ref_strand="+" ref_description="SGN-E312407 [cTOA-5-L24]">
      <seq>tcactccatattttcacaaggtcatggctacttcctcgcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70701" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="71523" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E312407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="71523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCGCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336381" ref_strand="+" ref_description="SGN-E336381 [cTOE-10-N22]">
      <seq>tcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70701" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="71523" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E336381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="71523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306834" ref_strand="+" ref_description="SGN-E306834 [cLEY-11-F17]">
      <seq>tcactccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70701" stop="71820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="71520" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="71520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTG</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358882" ref_strand="+" ref_description="SGN-E358882 [cLHT-24-K17]">
      <seq>tcactccatattttcacaaagtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctggaccatccatggtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtgtgatggacacaaaaacagttgatttgttacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaaggagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70701" stop="71754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="71454" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E358882" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="71454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCT</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGACCATCCATGGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTGTGATGGACACAAAAACAGTTGATTTGTTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGGAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306966" ref_strand="+" ref_description="SGN-E306966 [cLEY-11-F5]">
      <seq>tcactccatattttcacaaggtcatggctgcttcctctgagccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70701" stop="71463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="71163" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306966" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="71163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTAC</genome_strand>
        <mrna_strand>TCACTCCATATTTTCACAAGGTCATGGCTGCTTCCTCTGAGCCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337646" ref_strand="+" ref_description="SGN-E337646 [cTOE-11-L16]">
      <seq>actccatattttcacaaggttttggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcatatctccttatctgctattgtgggctcacttggattcatttcaatctgggccataaatcgtacatcaatttccttgacaactcgtgtgagacatacggaccgcgatcaatcttctcgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacacaccgaataacataactcatctctcataatacacaacacgatacacttggctagtcgtgtgaatggtcggatcaataatggccagcaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgagaacctaacggtccaagcccattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70703" stop="71776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71003" g_stop="71476" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E337646" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71003" e_stop="71476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGAT</genome_strand>
        <mrna_strand>ACTCCATATTTTCACAAGGTTTTGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCATATCTCCTTATCTGCTATTGTGGGCTCACTTGGATTCATTTCAATCTGGGCCATAAATCGTACATCAATTTCCTTGACAACTCGTGTGAGACATACGGACCGCGATCAATCTTCTCGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACACACCGAATAACATAACTCATCTCTCATAATACACAACACGATACACTTGGCTAGTCGTGTGAATGGTCGGATCAATAATGGCCAGCAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGAGAACCTAACGGTCCAAGCCCATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307486" ref_strand="+" ref_description="SGN-E307486 [cLEY-12-L4]">
      <seq>ctccatattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70704" stop="71803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71004" g_stop="71503" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71004" e_stop="71503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTC</genome_strand>
        <mrna_strand>CTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305080" ref_strand="+" ref_description="SGN-E305080 [cLEY-18-C17]">
      <seq>atattttcacaaagtcatggctacttcctctcaaccattgttagattggcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatgagccagtccggtctattatggagcctatgttgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70708" stop="71874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="71574" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E305080" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="71574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGA</genome_strand>
        <mrna_strand>ATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTGGCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGAGCCAGTCCGGTCTATTATGGAGCCTATGTTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304482" ref_strand="+" ref_description="SGN-E304482 [cLEX-12-L14]">
      <seq>atattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70708" stop="71821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="71521" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E304482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="71521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</genome_strand>
        <mrna_strand>ATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300012" ref_strand="+" ref_description="SGN-E300012 [cLEW-11-L13]">
      <seq>atattttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70708" stop="71661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="71361" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E300012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="71361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</genome_strand>
        <mrna_strand>ATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306074" ref_strand="+" ref_description="SGN-E306074 [cLEY-13-O1]">
      <seq>attttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70710" stop="71877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="71577" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="71577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTT</genome_strand>
        <mrna_strand>ATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367265" ref_strand="+" ref_description="SGN-E367265 [cLPT-5-D19]">
      <seq>ttttcacaatttcatggctacttcctctcaaccattgttagattctccgaaaacaaaatcctcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatccatggtacatcaatttccttgacaactcgtatttgtgatacggcccatgatcagccatcttgcttagccatgctctctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcaagcaatgtgaacggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggcccggtctattatggagcctatgttgaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70711" stop="71878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71011" g_stop="71578" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E367265" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71011" e_stop="71578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</genome_strand>
        <mrna_strand>TTTTCACAATTTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCGAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCCATGGTACATCAATTTCCTTGACAACTCGTATTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTCTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCAAGCAATGTGAACGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGCCCGGTCTATTATGGAGCCTATGTTGAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306823" ref_strand="+" ref_description="SGN-E306823 [cLEY-11-O12]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70711" stop="71825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71011" g_stop="71525" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71011" e_stop="71525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAG</genome_strand>
        <mrna_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306261" ref_strand="+" ref_description="SGN-E306261 [cLEY-13-P10]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcaccctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70711" stop="71786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71011" g_stop="71486" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306261" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71011" e_stop="71486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCA-CCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</genome_strand>
        <mrna_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305113" ref_strand="+" ref_description="SGN-E305113 [cLEY-18-B10]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70711" stop="71737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71011" g_stop="71437" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E305113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71011" e_stop="71437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATG</genome_strand>
        <mrna_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336828" ref_strand="+" ref_description="SGN-E336828 [cTOE-5-D22]">
      <seq>ttttcacaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70711" stop="71719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71011" g_stop="71419" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E336828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71011" e_stop="71419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGAT</genome_strand>
        <mrna_strand>TTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297106" ref_strand="+" ref_description="SGN-E297106 [cLEW-2-K9]">
      <seq>acaaggtcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagatgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccatgtggatgatcattcatggctaagtaccattctcaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70716" stop="71808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71016" g_stop="71508" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E297106" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71016" e_stop="71508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAA</genome_strand>
        <mrna_strand>ACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGATGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATGTGGATGATCATTCATGGCTAAGTACCATTCTCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307109" ref_strand="+" ref_description="SGN-E307109 [cLEY-15-D2]">
      <seq>tcatggctacttcctctcaaccattgttagattctcccaagacaaaatcttccgtggtctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70722" stop="71787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71022" g_stop="71487" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307109" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71022" e_stop="71487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCC-TCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</genome_strand>
        <mrna_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAGACAAAATCTTCCGTGGTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307461" ref_strand="+" ref_description="SGN-E307461 [cLEY-12-B4]">
      <seq>tcatggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgcgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagctgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctataagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70722" stop="71783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71022" g_stop="71483" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307461" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71022" e_stop="71483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATT</genome_strand>
        <mrna_strand>TCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGCGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGCTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTATAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306075" ref_strand="+" ref_description="SGN-E306075 [cLEY-13-O3]">
      <seq>catggctacttcctctcaaccattgtgagattctcccaagacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70723" stop="71824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71023" g_stop="71524" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E306075" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71023" e_stop="71524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATA</genome_strand>
        <mrna_strand>CATGGCTACTTCCTCTCAACCATTGTGAGATTCTCCCAAGACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336872" ref_strand="+" ref_description="SGN-E336872 [cTOE-5-I6]">
      <seq>tggctacttcctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70725" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71025" g_stop="71523" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E336872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71025" e_stop="71523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302072" ref_strand="+" ref_description="SGN-E302072 [cLEW-19-G9]">
      <seq>ctctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgaattggtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70735" stop="71883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71035" g_stop="71583" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E302072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71035" e_stop="71583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGC</genome_strand>
        <mrna_strand>CTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGAATTGGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301571" ref_strand="+" ref_description="SGN-E301571 [cLEW-23-L7]">
      <seq>ggaattcggcacgaggctcaaccattgttagattctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70737" stop="71732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71037" g_stop="71432" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="412" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E301571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71037" e_stop="71432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACT</genome_strand>
        <mrna_strand>CTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307644" ref_strand="+" ref_description="SGN-E307644 [cLEY-16-J7]">
      <seq>attctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70752" stop="71889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71052" g_stop="71589" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E307644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71052" e_stop="71589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGC</genome_strand>
        <mrna_strand>ATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341209" ref_strand="+" ref_description="SGN-E341209 [cTOE-22-M11]">
      <seq>ttctcccaaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgtttaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70753" stop="71661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71053" g_stop="71361" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E341209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71053" e_stop="71361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</genome_strand>
        <mrna_strand>TTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTTAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297088" ref_strand="+" ref_description="SGN-E297088 [cLEW-2-K6]">
      <seq>caaaacaaaatcttcctcttctactaaagctctctatgtgcttctctccttagctgctattgggggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgcagtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaagttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgtgaaaaatacacgagacgatccatttggcgagcaatgtgaatggtccgatcaataatggccacgaacaagtagctctagaagattggttagagttgatggagtcgtcacgggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcgttctcaccaaccatgttagttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70759" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71059" g_stop="71523" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E297088" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71059" e_stop="71523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCG-TGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>CAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGGGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGCAGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAAGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTGAAAAATACACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCCGATCAATAATGGCCACGAACAAGTAGCTCTAGAAGATTGGTTAGAGTTGATGGAGTCGTCACGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCGTTCTCACCAACCATGTTAGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297365" ref_strand="+" ref_description="SGN-E297365 [cLEW-10-G3]">
      <seq>ctaaagctctctatgtgcttctctccttagctgctattgagggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttacagttgatggatttgtcaagggatagattaatggactccatggtgggactagggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70782" stop="71821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71082" g_stop="71521" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E297365" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71082" e_stop="71521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</genome_strand>
        <mrna_strand>CTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGAGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTACAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTAGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309879" ref_strand="+" ref_description="SGN-E309879 [cLEZ-10-C17]">
      <seq>tgcttctcttcttagctgctattgtgggctcagttggattcatttcaatctgggccatcaatcgtacatcaatttccttgacaactcgtgtttgtgatacggcccatgatcagccatcttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70797" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71097" g_stop="71523" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E309879" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71097" e_stop="71523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</genome_strand>
        <mrna_strand>TGCTTCTCTTCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201393" ref_strand="+" ref_description="SGN-E201393 [cLEC-4-L11]">
      <seq>ttgcttagccatgctgtctgaggttgcacctgctggtctgatggatacaaaaacagttgatttgctacagatggttttgcataaatcatcgttaaaaatccacgagacgatccatttggcgagcaatgtgaatggtcggatcaataatggccaggaacaagtagctctagaagattgtttagagttgatggatttgtcaagggatagattaatggactccatgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttacttgcattgatggtctaaatggccaggtccggtctattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="70915" stop="71856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71215" g_stop="71556" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E201393" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71215" e_stop="71556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTAT</genome_strand>
        <mrna_strand>TTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309644" ref_strand="+" ref_description="SGN-E309644 [cLEY-26-F4]">
      <seq>ttgtttagagttgatggatttgtcaagggatagattaatggactccatggtgggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="71089" stop="72274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71389" g_stop="71972" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71973" i_stop="72097" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72098" g_stop="72111" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="598" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E309644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71389" e_stop="71972"/>
          <exon e_start="72098" e_stop="72111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGAT</genome_strand>
        <mrna_strand>TTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299877" ref_strand="+" ref_description="SGN-E299877 [cLEW-1-M8]">
      <seq>catgatgggacttgggaacctaacggcccaagcccattttgatgttcattcatggttaagtagcatcctcacgaaccatgttacttgcattgatggtctaaatggccaggtccggtctattatggagcctatgttgaatgatttagtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaatttataaagaaaatgttgagattgggaaaactaagaagaatttaatgcttgtgggtgatggcatggatgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="71134" stop="72210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71434" g_stop="71910" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E299877" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71434" e_stop="71910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAAC</genome_strand>
        <mrna_strand>CATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200610" ref_strand="+" ref_description="SGN-E200610 [cLEC-9-M13]">
      <seq>gggacttgggaacctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaaaatatnaatgcttggggtgatggcatggatgcaactattatcactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="71140" stop="72224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71440" g_stop="71924" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E200610" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71440" e_stop="71924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATAT-AATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAA</genome_strand>
        <mrna_strand>GGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAA-AATATNAATGCTTG-GGGTGATGGCATGGATGCAACTATTATCACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204379" ref_strand="+" ref_description="SGN-E204379 [cLEC-13-F5]">
      <seq>ctaacggtccaagcccattttgatgttcattcatggctaagtagcattctcaccaaccatgttacttgcatagatggcctaaatggccaggtccggtctattatggagcctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62264" stop="72421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71453" g_stop="71972" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71973" i_stop="72097" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72098" g_stop="72121" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="544" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E204379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71453" e_stop="71972"/>
          <exon e_start="72098" e_stop="72121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAG</genome_strand>
        <mrna_strand>CTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208081" ref_strand="+" ref_description="SGN-E208081 [cLEC-34-J15]">
      <seq>ctatgttgaatgatttggtagcaagagcaaggacttccttggccttgatggttgcaattgcaccacaaaagaatattgtaccaacagttagtgatggattgccctcatgggttagtgctaatgatagaagacttttgcaactttcagcaaatgcaatagcagccaatgttgtagtggctaaagatggcagtggaaaatacaaaaccgtaaaagaagcagttgcttctgctccagataatagtaagactcgatatgttatttatgtcaaaaaaggaacttataaagaaaatgttgagattgggaaaaagaagaagaatataatgcttgtgggtgatggcatggatgcaactattatcactggaaacttgaatgttattgatggctcaacaactttcaaatctgcaactgttgctgctgttggggatggattcatagcccaagatatacaattccaaaacacagcagggccacaaaagcaccaagcagtggcccttcgtgttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="62373" stop="72491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71562" g_stop="71972" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71973" i_stop="72097" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72098" g_stop="72191" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="505" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E208081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71562" e_stop="71972"/>
          <exon e_start="72098" e_stop="72191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTGGTAAATATCTCATTTCTCACTATACTCTTTTGACTTATCTTTTTTGGTCTGACAAAGAGGCTTGGATTTTGACATGAAGATGTGTTTTGAAAAATTGATGAAGTTGTTTACTTTGTTAAATGCAGCTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</genome_strand>
        <mrna_strand>CTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG.............................................................................................................................CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308358" ref_strand="+" ref_description="SGN-E308358 [cLEY-25-E2]">
      <seq>attttatctttggtaacgcagcagttgtgttccaaaactctaaactggcagcgcgaaagcccatgagcggacagaaaaacatggttacagcacaaggtcgcgaagatccaaaccaaaatacaggaacttcaatccagaattgtgacattattcctagctcggaccttgcaccagtaaaagggtccgtgaagacatatttgggcagaccatggaaagcgtactcgaggacagtgtacatgcagtccaacattggagaccatattgatccagcaggttggtcagaatgggacggtgattttgcattgaaaacactgtattatggtgagtacatgaacaaaggagctggtgctggcattagtaagagagttaactggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttaattcaaatatgtgtgccatgtattgctagtgaagttttagtatgttttggttgctttctgtttgcttgttctgtgatgataataataatatgctgcttagttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="71998" stop="73202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72298" g_stop="72902" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308358" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72298" e_stop="72902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACA-TGTATTATGGTGAGTACATGAAC-AAGGAGCTGGTGCTGG-A-TAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGG</genome_strand>
        <mrna_strand>ATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266248" ref_strand="-" ref_description="SGN-E266248 [cLEI-3-B1]">
      <seq>agtaaaagggtccgtgaagacatatttgggcagaccatggaaagcgtactcgaggacagtgtacatgcagtccaacattggagaccatattgatccagcaggttggtcagaatgggacggtgattttgcattgaaaacactgtattatggtgagtacatgaacaaaggagctggtgctggcattagtaagagagttaactggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttaattcaaatatgtgtgccatgtattgctagtgaagttttagtatgttttggttgctttctgtttgcttgttctgtgatgataataataatatgctgcttagttgtggctctgatgactgaaccatgccccaataagaaattataaattacattatttagaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="72170" stop="73260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72470" g_stop="72955" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="510"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E266248" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72470" e_stop="72955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACA-TGTATTATGGTGAGTACATGAAC-AAGGAGCTGGTGCTGG-A-TAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAATTATTTAGA</genome_strand>
        <mrna_strand>AGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCCCAATAAGAAATTATAAATTACATTATTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309001" ref_strand="+" ref_description="SGN-E309001 [cLEY-23-F6]">
      <seq>caacattggagaccatattgatccagcaggttggtcagaatgggacggtgattttgcattgaaaacactgtattatggtgagtacatgaacaaaggagctggtgctggcattagtaagagagttaactggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttaattcaaatatgtgtgccatgtattgctagtgaagttttagtatgttttggttgctttctgtttgcttgttctgtgatgataataataatatgctgcttagttgtggctctgatgactgaaccatgccacaataagaaattataaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="72242" stop="73246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72542" g_stop="72956" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E309001" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72542" e_stop="72956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACA-TGTATTATGGTGAGTACATGAAC-AAGGAGCTGGTGCTGG-A-TAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAATTATTTAGAA</genome_strand>
        <mrna_strand>CAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308385" ref_strand="+" ref_description="SGN-E308385 [cLEY-25-P18]">
      <seq>tatggtgagtacatgaacaaaggagctggtgctggcattagtaagagagttaactggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttaattcaaatatgtgtgccatgtattgctagtgaagttttagtatgttttggttgctttctgtttgcttgttctgtgatgataataataatatgctgcttagttgtggctctgatgactgaaccatgccacaataagaaattataaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="72314" stop="73246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72614" g_stop="72953" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E308385" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72614" e_stop="72953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGAGTACATGAAC-AAGGAGCTGGTGCTGG-A-TAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAATTATTTA</genome_strand>
        <mrna_strand>TATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302852" ref_strand="+" ref_description="SGN-E302852 [cLEY-2-O19]">
      <seq>tggcctggttatcataaagctttaacaacatccgaggccacaaagttcactgtgggtcagctgattcaaggagcagcatggttaaaatctactggtgtcgcttacactgatgggttgtgaggaacttgtttaattcaaatatgtgtgccatgtattgctagtgaagttttagtatgttttggttgctttctgtttgcttgttctgtgatgataataataatatgctgcttagttgtggctctgatgactgaaccatgccacaataagaaattataaattaaattatttagaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="72365" stop="73260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72665" g_stop="72959" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="305"/>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E302852" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72665" e_stop="72959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAATTATTTAGAATAG</genome_strand>
        <mrna_strand>TGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAATTATTTAGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243205" ref_strand="+" ref_description="SGN-E243205 [cLEE-2-A4]">
      <seq>aatgatccagggaagtatcatatcttttaccaaggatcagggatgcagttaggagctgaaggttttgctgttggattcttgtacacgattgttggattgttgttggcactaatgactcatgttttgcttcatctgaagaacaggggaacacagagtttgctcatggctttggggcttttcgtttcattttgggcggtaaagagggtgatttacttaaataattggaagactggctatggtgttcatgcttattggccttcaggttggatgtgatagcaatgtagtttgtctgttatactacaattgagtgatccttattcatcaaaagtagttgaatgaaaagtttcagatgttacattttagatttatcgagcttttattttgtagtgaagcatttgtttgccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="76736" stop="75731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76436" g_stop="76031" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E243205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76436" e_stop="76031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCCAGGGAAGTATCATATCTTTTACCAAGGATCAGGGATGCAGTTAGGAGCTGAAGGTTTTGCTGTTGGATTCTTGTACACGATTGTTGGATTGTTGTTGGCACTAATGACTCATGTTTTGCTTCATCTGAAGAACAGGGGAACACAGAGTTTGCTCATGGCTTTGGGGCTTTTCGTTTCATTTTGGGCGGTAAAGAGGGTGATTTACTTAAATAATTGGAAGACTGGCTATGGTGTTCATGCTTATTGGCCTTCAGGTTGGATGTGATAGCAATGTAGTTTGTCTGTTATACTACAATTGAGTGATCCTTATTCATCAAAAGTAGTTGAATGAAAAGTTTCAGATGTTACATTTTAGATTTATCGAGCTTTTATCTTGTAGTGAAGCATTTGTTTGCCAG</genome_strand>
        <mrna_strand>AATGATCCAGGGAAGTATCATATCTTTTACCAAGGATCAGGGATGCAGTTAGGAGCTGAAGGTTTTGCTGTTGGATTCTTGTACACGATTGTTGGATTGTTGTTGGCACTAATGACTCATGTTTTGCTTCATCTGAAGAACAGGGGAACACAGAGTTTGCTCATGGCTTTGGGGCTTTTCGTTTCATTTTGGGCGGTAAAGAGGGTGATTTACTTAAATAATTGGAAGACTGGCTATGGTGTTCATGCTTATTGGCCTTCAGGTTGGATGTGATAGCAATGTAGTTTGTCTGTTATACTACAATTGAGTGATCCTTATTCATCAAAAGTAGTTGAATGAAAAGTTTCAGATGTTACATTTTAGATTTATCGAGCTTTTATTTTGTAGTGAAGCATTTGTTTGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539335" ref_strand="+" ref_description="SGN-E539335 [TUS-59-A16]">
      <seq>aaaaccaccatggagagcaatgcttcttcaatggctcgtgttcttttgattttatcagtaatttttacccttttttcatcatcaaatggtgtagttggaggtgcatttgaagaaaatttcagtaaaagttgtcctggtacacatttcaagacttctaaagatggacagatctggtatcttaccttagaccaagtatcagattgtgggttcataacaaaacagagctatagatttggttggtatagcacaaagttgaaattagtaggaggtgactctgctggtgttgtgacagcattttatatgtgctcagaagtagaggcagggccattgagagatgagatagattttgagtttttgggaaacagaacagggcagccttatcttattcagacaaatgtgtataacaatgggagtggtggacgtgaaatgaggcatcaactttggtttgatcctactctcgactttcatacttattccattctttggaactctcatcaaattgtattttttgtggataaagtaccaataagggtatacaagaacgcgaatcacacaaacaatttctttccagcccagaggccgatgtacgtgttttcaagcatatgggatgcagataattgggctactagaggaggcttggacaagataaactggggaaatgcaccatttgtagcatcttataaggattttaccatagacgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="88794" stop="90826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89094" g_stop="89292" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89293" i_stop="89383" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89384" g_stop="89484" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="300" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89485" i_stop="89557" i_length="73">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89558" g_stop="89760" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="503" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89761" i_stop="90326" i_length="566">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90327" g_stop="90526" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="703" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E539335" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89094" e_stop="89292"/>
          <exon e_start="89384" e_stop="89484"/>
          <exon e_start="89558" e_stop="89760"/>
          <exon e_start="90327" e_stop="90526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCACCATGGAGAGCAATGCTTCTTCAATGGCTCGTGTTCTTTTGATTTTATCAGTAATTTTTACCCTTTTTTCATCATCAAATGGTGTAGTTGGAGGTGCATTTGAAGAAAATTTCAGTAAAAGTTGTCCTGGTACACATTTCAAGACTTCTAAAGATGGACAGATCTGGTATCTTACCTTAGACCAAGTATCAGGTGATTAAAATCCTATAAATTTGAAACGCATTTTATTTTGTTCTTTTGAATTTTGAATATATTTCAATTTTTTTTGTGTGTGGTATGTTAGATTGTGGGTTCATAACAAAACAGAGCTATAGATTTGGTTGGTATAGCACAAAGTTGAAATTAGTAGGAGGTGACTCTGCTGGTGTTGTGACAGCATTTTATGTAAGTTCACTTCAAACATTTTGAACATTTTTGTGGGAATTTTTTTTTAATGTTTTTTTTTGGGGGGTTACAGATGTGCTCAGAAGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTCTCGACTTTCATACTTATTCCATTCTTTGGAACTCTCATCAAATTGTGTAAGTCTTCTTTTTCACTCTCTAAGTTAATTTTTGTTTTCCTTTTTCTAGTCGATATTCGAAATTCAATCAGCGTTGGGTAGATCCATTAAGAAGGTAAAATGTTTGCTACATTCAATGTACTTCATCCATATGCGCATAAGGATTAAAGTAAATTTATCAGAATTCACGACCAGTAGATCCATCGTAAAATGTAACCTTTTTTGGATTGAAAATTACATTTATGTAGTAGATACGATTACTCTTCAGTTTTTTCTTATGATTACATTTTTTACCGCCATTTCTAGGATCTAAATCTAAGAAATTTGGTTAATGATATAAAAATTCGAACCATCTTACTACTCCCATCTATGGTTACTTTTTGTTTCTCTAATTATATACATAAAGGTACCACAATACTATAGTAACAATCTTTCAAAGAAAAAAAAAAGGTCATTTAAAATTGCGACTAACATCAGGATACTCGTGAAATGGATTTGAACATACCGAAATGGATATGTTGAAAACAAATAATTTCAAATTAACGATGACTCGATCAAGTATCACATACATTCTTGTAAATGCAGATTTTTTGTGGATAAAGTACCAATAAGGGTATACAAGAACGCGAATCACACAAACAATTTCTTTCCAGCCCAGAGGCCGATGTACGTGTTTTCAAGCATATGGAATGCAGATAATTGGGCTACTAGAGGAGGCTTGGACAAGATAAACTGGGAAAATGCACCATTTGTAGCATCTTATAAGGATTTTACCATAGACGCTT</genome_strand>
        <mrna_strand>AAAACCACCATGGAGAGCAATGCTTCTTCAATGGCTCGTGTTCTTTTGATTTTATCAGTAATTTTTACCCTTTTTTCATCATCAAATGGTGTAGTTGGAGGTGCATTTGAAGAAAATTTCAGTAAAAGTTGTCCTGGTACACATTTCAAGACTTCTAAAGATGGACAGATCTGGTATCTTACCTTAGACCAAGTATCAG...........................................................................................ATTGTGGGTTCATAACAAAACAGAGCTATAGATTTGGTTGGTATAGCACAAAGTTGAAATTAGTAGGAGGTGACTCTGCTGGTGTTGTGACAGCATTTTAT.........................................................................ATGTGCTCAGAAGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTCTCGACTTTCATACTTATTCCATTCTTTGGAACTCTCATCAAATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTGGATAAAGTACCAATAAGGGTATACAAGAACGCGAATCACACAAACAATTTCTTTCCAGCCCAGAGGCCGATGTACGTGTTTTCAAGCATATGGGATGCAGATAATTGGGCTACTAGAGGAGGCTTGGACAAGATAAACTGGGGAAATGCACCATTTGTAGCATCTTATAAGGATTTTACCATAGACGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284163" ref_strand="+" ref_description="SGN-E284163 [cLER-13-N24]">
      <seq>aaaccaccatggagagcaatgcttcttcaatggctcgtgttcttttgattttatcagtaatttttacccttttttcatcatcaaatggtgtagttggaggtgcatttgaagaaaatttcagtaaaagttgtcctggtacacatttcaagacttctaaagatggacagatctggtatcttaccttagaccaagtatcagattgtgggttcataacaaaacagagctatagatttggttggtatagcacaaagttgaaattagtaggaggtgactctgctggtgttgtgacagcattttatatgtgctcagaagtagaggcagggccattgagagatgagatagattttgagtttttgggaaacagaacagggcagccttatcttattcagacaaatgtgtataacaatgggagtggtggacgtgaaatgaggcatcaactttggtttgatcctactgtcgactttcatacttattccattctttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="88795" stop="90046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89095" g_stop="89292" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89293" i_stop="89383" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89384" g_stop="89484" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="299" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89485" i_stop="89557" i_length="73">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89558" g_stop="89746" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="488" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E284163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89095" e_stop="89292"/>
          <exon e_start="89384" e_stop="89484"/>
          <exon e_start="89558" e_stop="89746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCACCATGGAGAGCAATGCTTCTTCAATGGCTCGTGTTCTTTTGATTTTATCAGTAATTTTTACCCTTTTTTCATCATCAAATGGTGTAGTTGGAGGTGCATTTGAAGAAAATTTCAGTAAAAGTTGTCCTGGTACACATTTCAAGACTTCTAAAGATGGACAGATCTGGTATCTTACCTTAGACCAAGTATCAGGTGATTAAAATCCTATAAATTTGAAACGCATTTTATTTTGTTCTTTTGAATTTTGAATATATTTCAATTTTTTTTGTGTGTGGTATGTTAGATTGTGGGTTCATAACAAAACAGAGCTATAGATTTGGTTGGTATAGCACAAAGTTGAAATTAGTAGGAGGTGACTCTGCTGGTGTTGTGACAGCATTTTATGTAAGTTCACTTCAAACATTTTGAACATTTTTGTGGGAATTTTTTTTTAATGTTTTTTTTTGGGGGGTTACAGATGTGCTCAGAAGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTCTCGACTTTCATACTTATTCCATTCTTTGGAAC</genome_strand>
        <mrna_strand>AAACCACCATGGAGAGCAATGCTTCTTCAATGGCTCGTGTTCTTTTGATTTTATCAGTAATTTTTACCCTTTTTTCATCATCAAATGGTGTAGTTGGAGGTGCATTTGAAGAAAATTTCAGTAAAAGTTGTCCTGGTACACATTTCAAGACTTCTAAAGATGGACAGATCTGGTATCTTACCTTAGACCAAGTATCAG...........................................................................................ATTGTGGGTTCATAACAAAACAGAGCTATAGATTTGGTTGGTATAGCACAAAGTTGAAATTAGTAGGAGGTGACTCTGCTGGTGTTGTGACAGCATTTTAT.........................................................................ATGTGCTCAGAAGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTGTCGACTTTCATACTTATTCCATTCTTTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548203" ref_strand="+" ref_description="SGN-E548203 [TUS-59-A16](-)">
      <seq>agtagaggcagggccattgagagatgagatagattttgagtttttgggaaacagaacagggcagccttatcttattcagacaaatgtgtataacaatgggagtggtggacgtgaaatgaggcatcaactttggtttgatcctactctcgactttcatacttattccattctttggaactctcatcaaattgtattttttgtggataaagtaccaataagggtatacaagaacgcgaatcacacaaacaatttctttccagcccagaggccgatgtacgtgttttcaagcatatggaatgcagataattgggctactagaggaggcttggacaagataaactgggaaaatgcaccatttgtagcatcttataaggattttaccatagacgcttgtccatggaaaaacccttaccctgcttgtgcttcatccaccacacagcactggtgggatcagaataatacttggcacctatcaagtaaagagaagattgattatgcttgggttcagaggaactttgtggtttataattattgccaggatactgtgaggaacaagtacaagcctcaagagtgttggttaaatccattggactaatattaaacattagaaaaaattcattggtgagagaaaagtcatagtagtattttgatcttgattttgagtgtatatattggacgattgagccattgtagatccatcgattggtatattgtaaaccatcggcattactactattggaaagtgaaaagagtggttcactatatttacaaatgttataacgatattcttaatgtaatcagtatgttttattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="89269" stop="91253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="89760" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89761" i_stop="90326" i_length="566">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90327" g_stop="90958" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="824" r_length="632" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E548203" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="89760"/>
          <exon e_start="90327" e_stop="90958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTCTCGACTTTCATACTTATTCCATTCTTTGGAACTCTCATCAAATTGTGTAAGTCTTCTTTTTCACTCTCTAAGTTAATTTTTGTTTTCCTTTTTCTAGTCGATATTCGAAATTCAATCAGCGTTGGGTAGATCCATTAAGAAGGTAAAATGTTTGCTACATTCAATGTACTTCATCCATATGCGCATAAGGATTAAAGTAAATTTATCAGAATTCACGACCAGTAGATCCATCGTAAAATGTAACCTTTTTTGGATTGAAAATTACATTTATGTAGTAGATACGATTACTCTTCAGTTTTTTCTTATGATTACATTTTTTACCGCCATTTCTAGGATCTAAATCTAAGAAATTTGGTTAATGATATAAAAATTCGAACCATCTTACTACTCCCATCTATGGTTACTTTTTGTTTCTCTAATTATATACATAAAGGTACCACAATACTATAGTAACAATCTTTCAAAGAAAAAAAAAAGGTCATTTAAAATTGCGACTAACATCAGGATACTCGTGAAATGGATTTGAACATACCGAAATGGATATGTTGAAAACAAATAATTTCAAATTAACGATGACTCGATCAAGTATCACATACATTCTTGTAAATGCAGATTTTTTGTGGATAAAGTACCAATAAGGGTATACAAGAACGCGAATCACACAAACAATTTCTTTCCAGCCCAGAGGCCGATGTACGTGTTTTCAAGCATATGGAATGCAGATAATTGGGCTACTAGAGGAGGCTTGGACAAGATAAACTGGGAAAATGCACCATTTGTAGCATCTTATAAGGATTTTACCATAGACGCTTGTCCATGGAAAAACCCTTACCCTGCTTGTGCTTCATCCACCACACAGCACTGGTGGGATCAGAATAATACTTGGCACCTATCAAGTAAAGAGAAGATTGATTATGCTTGGGTTCAGAGGAACTTTGTGGTTTATAATTATTGCCAGGATACTGTGAGGAACAAGTACAAGCCTCAAGAGTGTTGGTTAAATCCATTGGACTAATATTAAACATTAGAAAAAATTCATTGGTGAGAGAAAAGTCATAGTAGTATTTTGATCTTGATTTTGAGTGTATATATTGGACGATTGAGCCATTGTAGATCCATCGATTGGTATATTGTAAACCATCGGCATTACTACTATTGGAAAGTGAAAAGAGTGGTTCACTATATTTACAAATGTTATAACGATATTCTTAATGTAATCAGTATGTTTTATTCAAGGAAGTTAA</genome_strand>
        <mrna_strand>AGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTCTCGACTTTCATACTTATTCCATTCTTTGGAACTCTCATCAAATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTGGATAAAGTACCAATAAGGGTATACAAGAACGCGAATCACACAAACAATTTCTTTCCAGCCCAGAGGCCGATGTACGTGTTTTCAAGCATATGGAATGCAGATAATTGGGCTACTAGAGGAGGCTTGGACAAGATAAACTGGGAAAATGCACCATTTGTAGCATCTTATAAGGATTTTACCATAGACGCTTGTCCATGGAAAAACCCTTACCCTGCTTGTGCTTCATCCACCACACAGCACTGGTGGGATCAGAATAATACTTGGCACCTATCAAGTAAAGAGAAGATTGATTATGCTTGGGTTCAGAGGAACTTTGTGGTTTATAATTATTGCCAGGATACTGTGAGGAACAAGTACAAGCCTCAAGAGTGTTGGTTAAATCCATTGGACTAATATTAAACATTAGAAAAAATTCATTGGTGAGAGAAAAGTCATAGTAGTATTTTGATCTTGATTTTGAGTGTATATATTGGACGATTGAGCCATTGTAGATCCATCGATTGGTATATTGTAAACCATCGGCATTACTACTATTGGAAAGTGAAAAGAGTGGTTCACTATATTTACAAATGTTATAACGATATTCTTAATGTAATCAGTATGTTTTATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323466" ref_strand="+" ref_description="SGN-E323466 [cTOC-7-C5]">
      <seq>atgccgatggtttacaatataccaatcgatggatctacaatggctcaatcttccaatatatacactcaaaatcaagatcaaaatactactatgacttttctctcaccaatgaaatatttctaatgtttaatattaatccaatggatttaaccaacactcttgaggcttgtacttgttcctcacaatatcctggcaataattataaaccacaaagttcctctgaacccaagcataatcaatcttctctttacttgataggtgccaagtattattctgatcccaccagtgctgtgtggtggatgaagcacaagcagggtaagggtttttccatggacaagcgtctatggtaaaatccttataagatgctacaaatggtgcattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="91161" stop="90176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90861" g_stop="90476" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E323466" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90861" e_stop="90476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGATGGTTTACAATATACCAATCGATGGATCTACAATGGCTCAATCGTCCAATATATACACTCAAAATCAAGATCAAAATACTACTATGACTTTTCTCTCACCAATGAATTTTTTCTAATGTTTAATATTAGTCCAATGGATTTAACCAACACTCTTGAGGCTTGTACTTGTTCCTCACAGTATCCTGGCAATAATTATAAACCACAAAGTTCCTCTGAACCCAAGCATAATCAATCTTCTCTTTACTTGATAGGTGCCAAGTATTATTCTGATCCCACCAGTGCTGTGTGGTGGATGAAGCACAAGCAGGGTAAGGGTTTTTCCATGGACAAGCGTCTATGGTAAAATCCTTATAAGATGCTACAAATGGTGCATTTTCCC</genome_strand>
        <mrna_strand>ATGCCGATGGTTTACAATATACCAATCGATGGATCTACAATGGCTCAATCTTCCAATATATACACTCAAAATCAAGATCAAAATACTACTATGACTTTTCTCTCACCAATGAAATATTTCTAATGTTTAATATTAATCCAATGGATTTAACCAACACTCTTGAGGCTTGTACTTGTTCCTCACAATATCCTGGCAATAATTATAAACCACAAAGTTCCTCTGAACCCAAGCATAATCAATCTTCTCTTTACTTGATAGGTGCCAAGTATTATTCTGATCCCACCAGTGCTGTGTGGTGGATGAAGCACAAGCAGGGTAAGGGTTTTTCCATGGACAAGCGTCTATGGTAAAATCCTTATAAGATGCTACAAATGGTGCATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272103" ref_strand="+" ref_description="SGN-E272103 [cLEN-4-G17]">
      <seq>tctcccaaaaccctaagccgtcgaccgttgcagcgcccctctctcagccatcggcacctccatcgtctgaaattcgttcagtgtaggaggtagaaatcctgtgcctgcctggtaatgcaaagacatttcaccatgtctgctgatcctgctttggtggaggaggatgcttcttcaggctcaggagaggacataaacatgttagatgggcacaataagcatcaaactgtaacgccaaattcaggtcgtcgcaagagaagtcgcaaggcaactggtgatgctatagttgatgcaatgctggaaattgcagctgcttcgaagatgagggcagctgccattatgaggaatgaggaacgctttgctataagcaaatgcataaaagtattagatgaaatgcaaggtgtagatcaaagtatctacttttttgcattggatttattcgagaattcaaatgccagagaaacttttatctctctgaagaatgagaggcgcttgatatggttgcagtgtaagtacaattcggcaaatgcagctagctaatggaatcctctattagttctcgactttcctatagtgggttttgctaggacattttgactgtatactactattacttcccaacatctatttactactggatgtggctggatgcttagttctaattcgtaattgttgcaaacaaaaaaaactactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="94857" stop="92281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94557" g_stop="94477" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94476" i_stop="93192" i_length="1285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93191" g_stop="92581" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="692" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E272103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94557" e_stop="94477"/>
          <exon e_start="93191" e_stop="92581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAGGTAAGATTTTTTAATTTTCGAAATTTCTAATAATAAATTTTCAAGGGCTACTCATATACAGCAAATCTCGTCGAATTATGCATTCTTCTTCAGAAAGAGGGGGATAAAATGGAATATAGGCTCCATTTGATTTATCTAGGAAAAAGAAAAAAAAACTCATTCTAAACAGATAAAAGGAAAATGTTTAAGTTGGGTAGTTTTTAGTGATAAATACAAAATCACTTGTTGAGTTGTGTTTGGTTTGCTTGTGGATTAAGATTTTCTAGATGGGTTTCTATAGATTTGGATTTGTCTTTTAGCCCTGTGTTCTGCATTCGCTGCACTAGTTTCTGTTTTTTTTCTGTGTTTCACTACTACAATAACGATTCTGTGTTGTATTCCTTCCATTCATTTTTACGTTGTTACTTTTTGATTTGACACAATCATTAAGAAATCATTCTTTGATTTTACCAAATTATCCTGTTTAGTATTAGGAAAAAATTGTTCTTTCTTGATACATCAAAGTGACAAAATCTCTTACTGTTTGTCTGTAAAGTAGATGTTATGCTTAACACATTAAATGTATCTTTATACTTGAAGGAAAACTTAAGTTATTGGGTATTCCCATTATGCAGTATCTCTGATTAATTGAAAATCTTTTGTAAAATTTTAAAATTTACATATTCAAAAAGTATACGAAAAATAGAATAAATTCCAATTATTCTTGATGATAAAAATTGGTGTCTCTCAAAAAAGGGACATGACAAGGAATTTAGGATGGAGGAGTATCATTTAACATCTTTGGCATTTGGGATAGAAAAACTTTTGAAATTAAAAGAATGAAGACTTTTGAAACTTGGGGTACTAAACATGTAAAGTGTGGTTATAAAAGTATTGAAAAATTTGTGGTCTTAAGTATGCCATTTTACTCTTAGTGAGAATTTTTTATAGCCACACGAATATCATTCTTTTTTAAATGGTTGAAAAAGGAAAAGGTTCTCATAGATTGAAACGGAGGGAGTAGTTACAATGCGAGTCTGCAAGTGTCTAGGATGCCCAAGGACAAGTAGTGTGGAGTATAAAAACCAGGATTCAACATTTGACAACTTTAATTGTGAAACAAATAGCGCAGTCATGCATTTTTTTGGTATTTGATGTTTGTACAAATAGATGTCTTATGTCCCTTTGTTGTTTCCTCCCTCCAAAGTCCAAACTAGGGCTAGAATAAACTCCAACTGTTAGTTGTGTGGGTGCCTGAGTTATCTTCTCTGTTAAATAATTTGTGATCATGTGCTTGTTTAATTAGTGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGCTTAGTTCTAATTCGTAATTGTTGCAAACAAAAAAAACTACTCT</genome_strand>
        <mrna_strand>TCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGCTTAGTTCTAATTCGTAATTGTTGCAAACAAAAAAAACTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550680" ref_strand="+" ref_description="SGN-E550680 [TUS-50-A19]">
      <seq>atctcccaaaaccctaagccgtcgaccgttgcagcgcccctctctcagccatcggcacctccatcgtctgaaattcgttcagtgtaggaggtagaaatcctgtgcctgcctggtaatgcaaagacatttcaccatgtctgctgatcctgctttggtggaggaggatgcttcttcaggctcaggagaggacataaacatgttagatgggcacaataagcatcaaactgtaacgccaaattcaggtcgtcgcaagagaagtcgcaaggcaactggtgatgctatagttgatgcaatgctggaaattgcagctgcttcgaagatgagggcagctgccattatgaggaatgaggaacgctttgctataagcaaatgcataaaagtattagatgaaatgcaaggtgtagatcaaagtatctacttttttgcattggatttattcgagaattcaaatgccagagaaacttttatctctctgaagaatgagaggcgcttgatatggttgcagtgtaagtacaattcggcaaatgcagctagctaatggaatcctctattagttctcgactttcctatagtgggttttgctaggacattttgactgtatactactattacttcccaacatctatttactactggatgtggctggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="94858" stop="92324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94558" g_stop="94477" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94476" i_stop="93192" i_length="1285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93191" g_stop="92624" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="650" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E550680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94558" e_stop="94477"/>
          <exon e_start="93191" e_stop="92624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAGGTAAGATTTTTTAATTTTCGAAATTTCTAATAATAAATTTTCAAGGGCTACTCATATACAGCAAATCTCGTCGAATTATGCATTCTTCTTCAGAAAGAGGGGGATAAAATGGAATATAGGCTCCATTTGATTTATCTAGGAAAAAGAAAAAAAAACTCATTCTAAACAGATAAAAGGAAAATGTTTAAGTTGGGTAGTTTTTAGTGATAAATACAAAATCACTTGTTGAGTTGTGTTTGGTTTGCTTGTGGATTAAGATTTTCTAGATGGGTTTCTATAGATTTGGATTTGTCTTTTAGCCCTGTGTTCTGCATTCGCTGCACTAGTTTCTGTTTTTTTTCTGTGTTTCACTACTACAATAACGATTCTGTGTTGTATTCCTTCCATTCATTTTTACGTTGTTACTTTTTGATTTGACACAATCATTAAGAAATCATTCTTTGATTTTACCAAATTATCCTGTTTAGTATTAGGAAAAAATTGTTCTTTCTTGATACATCAAAGTGACAAAATCTCTTACTGTTTGTCTGTAAAGTAGATGTTATGCTTAACACATTAAATGTATCTTTATACTTGAAGGAAAACTTAAGTTATTGGGTATTCCCATTATGCAGTATCTCTGATTAATTGAAAATCTTTTGTAAAATTTTAAAATTTACATATTCAAAAAGTATACGAAAAATAGAATAAATTCCAATTATTCTTGATGATAAAAATTGGTGTCTCTCAAAAAAGGGACATGACAAGGAATTTAGGATGGAGGAGTATCATTTAACATCTTTGGCATTTGGGATAGAAAAACTTTTGAAATTAAAAGAATGAAGACTTTTGAAACTTGGGGTACTAAACATGTAAAGTGTGGTTATAAAAGTATTGAAAAATTTGTGGTCTTAAGTATGCCATTTTACTCTTAGTGAGAATTTTTTATAGCCACACGAATATCATTCTTTTTTAAATGGTTGAAAAAGGAAAAGGTTCTCATAGATTGAAACGGAGGGAGTAGTTACAATGCGAGTCTGCAAGTGTCTAGGATGCCCAAGGACAAGTAGTGTGGAGTATAAAAACCAGGATTCAACATTTGACAACTTTAATTGTGAAACAAATAGCGCAGTCATGCATTTTTTTGGTATTTGATGTTTGTACAAATAGATGTCTTATGTCCCTTTGTTGTTTCCTCCCTCCAAAGTCCAAACTAGGGCTAGAATAAACTCCAACTGTTAGTTGTGTGGGTGCCTGAGTTATCTTCTCTGTTAAATAATTTGTGATCATGTGCTTGTTTAATTAGTGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGC</genome_strand>
        <mrna_strand>ATCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688345" ref_strand="+" ref_description="SGN-E688345 [t3_tus_50_a19]">
      <seq>atctcccaaaaccctaagccgtcgaccgttgcagcgcccctctctcagccatcggcacctccatcgtctgaaattcgttcagtgtaggaggtagaaatcctgtgcctgcctggtaatgcaaagacatttcaccatgtctgctgatcctgctttggtggaggaggatgcttcttcaggctcaggagaggacataaacatgttagatgggcacaataagcatcaaactgtaacgccaaattcaggtcgtcgcaagagaagtcgcaaggcaactggtgatgctatagttgatgcaatgctggaaattgcagctgcttcgaagatgagggcagctgccattatgaggaatgaggaacgctttgctataagcaaatgcataaaagtattagatgaaatgcaaggtgtagatcaaagtatctacttttttgcattggatttattcgagaattcaaatgccagagaaacttttatctctctgaagaatgagaggcgcttgatatggttgcagtgtaagtacaattcggcaaatgcagctagctaatggaatcctctattagttctcgactttcctatagtgggttttgctaggacattttgactgtatactactattacttcccaacatctatttactactggatgtggctggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="94858" stop="92324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94558" g_stop="94477" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94476" i_stop="93192" i_length="1285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93191" g_stop="92624" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="650" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E688345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94558" e_stop="94477"/>
          <exon e_start="93191" e_stop="92624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAGGTAAGATTTTTTAATTTTCGAAATTTCTAATAATAAATTTTCAAGGGCTACTCATATACAGCAAATCTCGTCGAATTATGCATTCTTCTTCAGAAAGAGGGGGATAAAATGGAATATAGGCTCCATTTGATTTATCTAGGAAAAAGAAAAAAAAACTCATTCTAAACAGATAAAAGGAAAATGTTTAAGTTGGGTAGTTTTTAGTGATAAATACAAAATCACTTGTTGAGTTGTGTTTGGTTTGCTTGTGGATTAAGATTTTCTAGATGGGTTTCTATAGATTTGGATTTGTCTTTTAGCCCTGTGTTCTGCATTCGCTGCACTAGTTTCTGTTTTTTTTCTGTGTTTCACTACTACAATAACGATTCTGTGTTGTATTCCTTCCATTCATTTTTACGTTGTTACTTTTTGATTTGACACAATCATTAAGAAATCATTCTTTGATTTTACCAAATTATCCTGTTTAGTATTAGGAAAAAATTGTTCTTTCTTGATACATCAAAGTGACAAAATCTCTTACTGTTTGTCTGTAAAGTAGATGTTATGCTTAACACATTAAATGTATCTTTATACTTGAAGGAAAACTTAAGTTATTGGGTATTCCCATTATGCAGTATCTCTGATTAATTGAAAATCTTTTGTAAAATTTTAAAATTTACATATTCAAAAAGTATACGAAAAATAGAATAAATTCCAATTATTCTTGATGATAAAAATTGGTGTCTCTCAAAAAAGGGACATGACAAGGAATTTAGGATGGAGGAGTATCATTTAACATCTTTGGCATTTGGGATAGAAAAACTTTTGAAATTAAAAGAATGAAGACTTTTGAAACTTGGGGTACTAAACATGTAAAGTGTGGTTATAAAAGTATTGAAAAATTTGTGGTCTTAAGTATGCCATTTTACTCTTAGTGAGAATTTTTTATAGCCACACGAATATCATTCTTTTTTAAATGGTTGAAAAAGGAAAAGGTTCTCATAGATTGAAACGGAGGGAGTAGTTACAATGCGAGTCTGCAAGTGTCTAGGATGCCCAAGGACAAGTAGTGTGGAGTATAAAAACCAGGATTCAACATTTGACAACTTTAATTGTGAAACAAATAGCGCAGTCATGCATTTTTTTGGTATTTGATGTTTGTACAAATAGATGTCTTATGTCCCTTTGTTGTTTCCTCCCTCCAAAGTCCAAACTAGGGCTAGAATAAACTCCAACTGTTAGTTGTGTGGGTGCCTGAGTTATCTTCTCTGTTAAATAATTTGTGATCATGTGCTTGTTTAATTAGTGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGC</genome_strand>
        <mrna_strand>ATCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200999" ref_strand="+" ref_description="SGN-E200999 [cLEC-5-G10]">
      <seq>tctcccaaaaccctaagccgtcgaccgttgcagcgcccctctctcagccatcggcacctccatcgtctgaaattcgttcagtgtaggaggtagaaatcctgtgcctgcctggtaatgcaaagacatttcaccatgtctgctgatcctgctttggtggaggaggatgcttcttcaggctcaggagaggacataaacatgttagatgggcacaataagcatcaaactgtaacgccaaattcaggtcgtcgcaagagaagtcgcaaggcaactggtgatgctatagttgatgcaatgctggaaattgcagctgcttcgaagatgagggcagctgccattatgaggaatgaggaacgctttgctataagcaaatgcataaaagtattagatgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="-" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="94857" stop="92580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94557" g_stop="94477" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94476" i_stop="93192" i_length="1285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93191" g_stop="92880" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="393" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="-" ref_id="SGN-E200999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94557" e_stop="94477"/>
          <exon e_start="93191" e_stop="92880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAGGTAAGATTTTTTAATTTTCGAAATTTCTAATAATAAATTTTCAAGGGCTACTCATATACAGCAAATCTCGTCGAATTATGCATTCTTCTTCAGAAAGAGGGGGATAAAATGGAATATAGGCTCCATTTGATTTATCTAGGAAAAAGAAAAAAAAACTCATTCTAAACAGATAAAAGGAAAATGTTTAAGTTGGGTAGTTTTTAGTGATAAATACAAAATCACTTGTTGAGTTGTGTTTGGTTTGCTTGTGGATTAAGATTTTCTAGATGGGTTTCTATAGATTTGGATTTGTCTTTTAGCCCTGTGTTCTGCATTCGCTGCACTAGTTTCTGTTTTTTTTCTGTGTTTCACTACTACAATAACGATTCTGTGTTGTATTCCTTCCATTCATTTTTACGTTGTTACTTTTTGATTTGACACAATCATTAAGAAATCATTCTTTGATTTTACCAAATTATCCTGTTTAGTATTAGGAAAAAATTGTTCTTTCTTGATACATCAAAGTGACAAAATCTCTTACTGTTTGTCTGTAAAGTAGATGTTATGCTTAACACATTAAATGTATCTTTATACTTGAAGGAAAACTTAAGTTATTGGGTATTCCCATTATGCAGTATCTCTGATTAATTGAAAATCTTTTGTAAAATTTTAAAATTTACATATTCAAAAAGTATACGAAAAATAGAATAAATTCCAATTATTCTTGATGATAAAAATTGGTGTCTCTCAAAAAAGGGACATGACAAGGAATTTAGGATGGAGGAGTATCATTTAACATCTTTGGCATTTGGGATAGAAAAACTTTTGAAATTAAAAGAATGAAGACTTTTGAAACTTGGGGTACTAAACATGTAAAGTGTGGTTATAAAAGTATTGAAAAATTTGTGGTCTTAAGTATGCCATTTTACTCTTAGTGAGAATTTTTTATAGCCACACGAATATCATTCTTTTTTAAATGGTTGAAAAAGGAAAAGGTTCTCATAGATTGAAACGGAGGGAGTAGTTACAATGCGAGTCTGCAAGTGTCTAGGATGCCCAAGGACAAGTAGTGTGGAGTATAAAAACCAGGATTCAACATTTGACAACTTTAATTGTGAAACAAATAGCGCAGTCATGCATTTTTTTGGTATTTGATGTTTGTACAAATAGATGTCTTATGTCCCTTTGTTGTTTCCTCCCTCCAAAGTCCAAACTAGGGCTAGAATAAACTCCAACTGTTAGTTGTGTGGGTGCCTGAGTTATCTTCTCTGTTAAATAATTTGTGATCATGTGCTTGTTTAATTAGTGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATG</genome_strand>
        <mrna_strand>TCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539209" ref_strand="+" ref_description="SGN-E539209 [TUS-58-N16](-)">
      <seq>tagtttctctatcatttgttttgattttctactatgtattcatttctacgtgaatgatccaaaagctgcagatttgaataagtttgtcctaggaaagaggcaaaatttatactgaaagaagttgaaggcaaaagcttctaatttttgtataaagcagactgctcggagggaatggctatattgattcttttcatcatgaccacgaggatcacgtagaacaacctgttttgatctcaactcttcaatggtgaatctatgtgttgctaagtttcttctctttgtgtagaaactaaatctctctgcctcaagatttttgtttgtttaggatgccttatcgatgttttctcaagatttaaggtaaatttacatgtttttcaatttgcctaattgacctattttctcttcaaggtcaaatctctgattttaatattcaaagggctatttcgggtccttgtactttttgtactatgcttcaatacaaaaatacaagagtagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="97006" stop="100952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97306" g_stop="97328" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97329" i_stop="97791" i_length="463">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97792" g_stop="97833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="65" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97834" i_stop="99513" i_length="1680">
            <donor d_prob="0.800" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99514" g_stop="99678" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="230" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99679" i_stop="100382" i_length="704">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100383" g_stop="100659" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="507" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E539209" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97306" e_stop="97328"/>
          <exon e_start="97792" e_stop="97833"/>
          <exon e_start="99514" e_stop="99678"/>
          <exon e_start="100383" e_stop="100659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCTCTATCATTTGTTTTGGTAATTTATCTCCTCTTTCTCCATTTTACTTTTTCTATGAAAATTAATTTTTCTATTTGGAATCTCAAATTTCACCTCTTCTTCCTTGATTGTTCGGCCTTCTAATTGTGTGCTATTTTTGCTGATGTATCTCTTCCCTAATTTTTTGTTGTTTTAGTGCACTTTCTTTGATTTTAATCATTATGACAACTTTTAAATCGTCTCTTATTAGATTTTATATGTACTTATTAACAATTTTTTTCTAATTTATTCATTCATGTCTGGATTCTATCTCAAAGTCTCTTTTATAAATTTACTTTTTCGTTTGTGCTGTTAAAATCTATGTAACTAGATGTGCCTCCGCTTATTATTTTTTTAATTCTAACAAGTATTCTGTAGTTGCAACAACTAATTCAATTTAAGTGACACACTTAAGGTGTTTGATAGTATGCCTAAACTAACTAAATTTTTTTTTTTTTTACAGATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAGGTTGGTGCTTTGTTTCTACTAGATGTCTGTTGTTTATGTATATTTTATTTATTTATCCCAAGAAATGGTTTGTCCTTTGTTTGCATCTATTTCAATTGCAAGTTGTTGCTATTAGTTAAACTCTGTGTTAGCGAAAAAATTTAGATATAATGTACAGTTTTTTCAGCACTCTATTAAACTATAAATATTATTTTTATCAAGATAAAATATTTCTCGAAGTAAGAATGTCAACATATGAGGGCAATACATAGATTTTAAAAGACCAAGGACATCGGCTAGATGATAGAGTTATGGACTACTTTTACCTTTTTTTGGTTAAAGGTAAAGCATGAAGAAGTTGTACATGCATAAATTTAGATATAATGTGCAGTTTTTTCAGCACTCCATTAAACTGTAAATATTATTTTTATCAAGATAAAATATTTCTCGAAATAAGAATGTCAACATATAAGGGCAATACATAGATTTTAAAAGACCAAGGACATCGGCTAGATGATAGAGTTATGAACTATTTTTTCCTTTTTTTGGTTAAAGGTAAAGCATGAAGAAGTTGTACATGCATATGTGGTGTTCCGTGAAAGTTTTGAATAAGCTTTTCCTTGTTTTTTGGACAAAAAATTTTCTACTTCATTAGTCAATAAATCAATAAGTATGTTACTATGGACAACTTCAATCTCTTGTTATCATTTATATTTAGAAATATGTTTCAAATGTATAATATACTTCTCTTTATATAGTGAGGTGCTTTCTTTCTTAAATTTTTTCCACTCAAATTTTATTGGGGTGCTTAAATTTGATAATAATAGTTATCCTCTTAAACGAAAACTTCTTAGAGGACTAAATGAAGGATGGATTGAAGTACTCCATCATATCTATTTGATCTCTCTTAACTTTGATGGTTGAATAGGTGTATAATGTGATTTCAAGAATCTTCTTTCTCAAATTCGTAGTAGGATTCATGTATGTTGTCTTCAAATGGATGTTGTGAGTCGTATATTAGTACACAAAGGTGTTTTTCCGAGTTAACCCTCAAATCTGAGTAAATATTGTTTGGAGATGGTTAGCCCTTAACTCTAAAATGTTAACTCTATTTGTCTTTTCTAGACATATGGTTGCTTACATTCATTTTGTTCCTTCATGCTTCAATGACAATTAACATAGACATTTGTACTTCCTTTTGCTCCTGGATTTCTTTTATCATTAGTGTTGAACTACAACTCTTCATTTGATAAGATATTCATTTGGTTATAGAAGGTTCAAGCTCAAACTTAGTAAAATGTGTAGTACATGTTTCATGTCGAACATGATCTTTTTTATGGTCTTACCAACAAGTGAATGAATACCTCAATTTGGGATTATAGGAAGTCAAAATGTACAGCTGATTTCTTTTCCTAATCAACCGAAATAAGTATTTGACGAGAAACTATTGCAAGCTGTTGTTGAAACATTGCTATTGTGCCGACACTTTTAGTTTCAGGACAACTTTCTCAATGGCGAAATCAGGCCTCAACTTAATATTTGACATGTTTCCATTAAAGATGTCAATCTGATCCTTATTTGAGCTATCCTGAAGATTCAACATCATTGCATATTTCTCAACAAAAGTTGTCTACATCTATGTTAAATTTTAATTATTTGGAGTTTGGATACTGTTTAAAAATTAGAGTTTCATCTCTGCAGCTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAAGTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTGGTAAGCCTACAAATCCAGACCCAGATCATCGTTAGTTTTATTGCTTTCTGAATCATAGTAGTTTCAAGCTTAATGAGCTTGATTTTTTGATAAAGTAGAAATCCTCCTTGTTCATTTTCCATTACTGGGAGTTTCTGATCTGAGAATCTGCTATCTTTTAAACTACTGGTGTGAGGATTACTTTTGTAGTTTTTCATTGATCGGTTTTTGTTACTATCTTATTTCTTCTACTTTGATCATAGTGTTATATTGTTGTAGATACTGTTCAACATGCCTTGTTATGCTTTCACATAAATTACTTCTTTTATCGGATTGCTTTGATTTGTTTTTCGTTGAACCGACTGTCTATCAGAGAGGGACTCGAATTTGTGGGACTACATTATCTTCTTGTTGTTGTATTTTTGTTTCATCAATTGTTTTAGGATTTTCACAATACTGGTTGGTAGATACTAGGATTTTCACAATACTGATTGGTAGATATATATCTCCTTATTTAGAAATGAGAATTAAAAAGGACAAACACTATATCTTCTAATTGTACTAAAGGTAGTACAGATTGTATAGTAAATTTTGCTCTTTTTCATTGATGAACAAATATTTGTCTCATTTTGCTTGACTTTGTGTACAACTTTTGCACTATTTTCTTACAATTCTCTATAGATTTTTGCTAAGCTTGGTTTATTTTCTCAACTCTTTTTTTGTAGATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTAGACAAATTATGGT</genome_strand>
        <mrna_strand>TAGTTTCTCTATCATTTGTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAATTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTAGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539211" ref_strand="+" ref_description="SGN-E539211 [TUS-58-N16]">
      <seq>tagtttctctatcatttgttttgattttctactatgtattcatttctacgtgaatgatccaaaagctgcagatttgaataagtttgtcctaggaaagaggcaaaatttatactgaaagaagttgaaggcaaaagcttctaatttttgtataaagcagactgctcggagggaatggctatattgattcttttcatcatgaccacgaggatcacgtagaacaacctgttttgatctcaactcttcaatggtgaatctatgtgttgctaagtttcttctctttgtgtagaaactaaatctctctgcctcaagatttttgtttgtttaggatgccttatcgatgttttctcaagatttaaggtaaatttacatgtttttcaatttgcctaattgacctattttctcttcaaggtcaaatctctgattttaatattcaaagggctatttcgggtccttgtactttttgtactatgcttcaatacaaaaatacaagagtagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="97006" stop="100952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97306" g_stop="97328" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97329" i_stop="97791" i_length="463">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97792" g_stop="97833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="65" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97834" i_stop="99513" i_length="1680">
            <donor d_prob="0.800" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99514" g_stop="99678" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="230" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99679" i_stop="100382" i_length="704">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100383" g_stop="100659" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="507" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E539211" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97306" e_stop="97328"/>
          <exon e_start="97792" e_stop="97833"/>
          <exon e_start="99514" e_stop="99678"/>
          <exon e_start="100383" e_stop="100659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCTCTATCATTTGTTTTGGTAATTTATCTCCTCTTTCTCCATTTTACTTTTTCTATGAAAATTAATTTTTCTATTTGGAATCTCAAATTTCACCTCTTCTTCCTTGATTGTTCGGCCTTCTAATTGTGTGCTATTTTTGCTGATGTATCTCTTCCCTAATTTTTTGTTGTTTTAGTGCACTTTCTTTGATTTTAATCATTATGACAACTTTTAAATCGTCTCTTATTAGATTTTATATGTACTTATTAACAATTTTTTTCTAATTTATTCATTCATGTCTGGATTCTATCTCAAAGTCTCTTTTATAAATTTACTTTTTCGTTTGTGCTGTTAAAATCTATGTAACTAGATGTGCCTCCGCTTATTATTTTTTTAATTCTAACAAGTATTCTGTAGTTGCAACAACTAATTCAATTTAAGTGACACACTTAAGGTGTTTGATAGTATGCCTAAACTAACTAAATTTTTTTTTTTTTTACAGATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAGGTTGGTGCTTTGTTTCTACTAGATGTCTGTTGTTTATGTATATTTTATTTATTTATCCCAAGAAATGGTTTGTCCTTTGTTTGCATCTATTTCAATTGCAAGTTGTTGCTATTAGTTAAACTCTGTGTTAGCGAAAAAATTTAGATATAATGTACAGTTTTTTCAGCACTCTATTAAACTATAAATATTATTTTTATCAAGATAAAATATTTCTCGAAGTAAGAATGTCAACATATGAGGGCAATACATAGATTTTAAAAGACCAAGGACATCGGCTAGATGATAGAGTTATGGACTACTTTTACCTTTTTTTGGTTAAAGGTAAAGCATGAAGAAGTTGTACATGCATAAATTTAGATATAATGTGCAGTTTTTTCAGCACTCCATTAAACTGTAAATATTATTTTTATCAAGATAAAATATTTCTCGAAATAAGAATGTCAACATATAAGGGCAATACATAGATTTTAAAAGACCAAGGACATCGGCTAGATGATAGAGTTATGAACTATTTTTTCCTTTTTTTGGTTAAAGGTAAAGCATGAAGAAGTTGTACATGCATATGTGGTGTTCCGTGAAAGTTTTGAATAAGCTTTTCCTTGTTTTTTGGACAAAAAATTTTCTACTTCATTAGTCAATAAATCAATAAGTATGTTACTATGGACAACTTCAATCTCTTGTTATCATTTATATTTAGAAATATGTTTCAAATGTATAATATACTTCTCTTTATATAGTGAGGTGCTTTCTTTCTTAAATTTTTTCCACTCAAATTTTATTGGGGTGCTTAAATTTGATAATAATAGTTATCCTCTTAAACGAAAACTTCTTAGAGGACTAAATGAAGGATGGATTGAAGTACTCCATCATATCTATTTGATCTCTCTTAACTTTGATGGTTGAATAGGTGTATAATGTGATTTCAAGAATCTTCTTTCTCAAATTCGTAGTAGGATTCATGTATGTTGTCTTCAAATGGATGTTGTGAGTCGTATATTAGTACACAAAGGTGTTTTTCCGAGTTAACCCTCAAATCTGAGTAAATATTGTTTGGAGATGGTTAGCCCTTAACTCTAAAATGTTAACTCTATTTGTCTTTTCTAGACATATGGTTGCTTACATTCATTTTGTTCCTTCATGCTTCAATGACAATTAACATAGACATTTGTACTTCCTTTTGCTCCTGGATTTCTTTTATCATTAGTGTTGAACTACAACTCTTCATTTGATAAGATATTCATTTGGTTATAGAAGGTTCAAGCTCAAACTTAGTAAAATGTGTAGTACATGTTTCATGTCGAACATGATCTTTTTTATGGTCTTACCAACAAGTGAATGAATACCTCAATTTGGGATTATAGGAAGTCAAAATGTACAGCTGATTTCTTTTCCTAATCAACCGAAATAAGTATTTGACGAGAAACTATTGCAAGCTGTTGTTGAAACATTGCTATTGTGCCGACACTTTTAGTTTCAGGACAACTTTCTCAATGGCGAAATCAGGCCTCAACTTAATATTTGACATGTTTCCATTAAAGATGTCAATCTGATCCTTATTTGAGCTATCCTGAAGATTCAACATCATTGCATATTTCTCAACAAAAGTTGTCTACATCTATGTTAAATTTTAATTATTTGGAGTTTGGATACTGTTTAAAAATTAGAGTTTCATCTCTGCAGCTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAAGTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTGGTAAGCCTACAAATCCAGACCCAGATCATCGTTAGTTTTATTGCTTTCTGAATCATAGTAGTTTCAAGCTTAATGAGCTTGATTTTTTGATAAAGTAGAAATCCTCCTTGTTCATTTTCCATTACTGGGAGTTTCTGATCTGAGAATCTGCTATCTTTTAAACTACTGGTGTGAGGATTACTTTTGTAGTTTTTCATTGATCGGTTTTTGTTACTATCTTATTTCTTCTACTTTGATCATAGTGTTATATTGTTGTAGATACTGTTCAACATGCCTTGTTATGCTTTCACATAAATTACTTCTTTTATCGGATTGCTTTGATTTGTTTTTCGTTGAACCGACTGTCTATCAGAGAGGGACTCGAATTTGTGGGACTACATTATCTTCTTGTTGTTGTATTTTTGTTTCATCAATTGTTTTAGGATTTTCACAATACTGGTTGGTAGATACTAGGATTTTCACAATACTGATTGGTAGATATATATCTCCTTATTTAGAAATGAGAATTAAAAAGGACAAACACTATATCTTCTAATTGTACTAAAGGTAGTACAGATTGTATAGTAAATTTTGCTCTTTTTCATTGATGAACAAATATTTGTCTCATTTTGCTTGACTTTGTGTACAACTTTTGCACTATTTTCTTACAATTCTCTATAGATTTTTGCTAAGCTTGGTTTATTTTCTCAACTCTTTTTTTGTAGATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTAGACAAATTATGGT</genome_strand>
        <mrna_strand>TAGTTTCTCTATCATTTGTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAATTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTAGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283254" ref_strand="+" ref_description="SGN-E283254 [cLER-12-C3]">
      <seq>agtttctctatcatttgttttgattttctactatgtattcatttctacgtgaatgatccaaaagctgcagatttgaataagtttgtcctaggaaagaggcaaaatttatactgaaagaagttgaaggcaaaagcttctaatttttgtataaagcagactgctcggagggaatggctatattgattcttttcatcatgaccacgaggatcacgtagaacaacctgttttgatctcaactcttcaatggtgaatctatgtgttgctaagtttcttctctttgtgtagaaactaaatctctctgcctcaagatttttgtttgtttaggatgccttatcgatgttttctcaagatttaaggtaaatttacatgtttttcaatttgcctaattgacctattttctcttcaaggtcaaatctctgattttaatattcaaagggctatttcgggtccttgtactttttgtactatgcttcaatacaaaaatacaagagtngacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0212C17-VxpxW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0212C17.1" temp_strand="+" temp_description="C02HBa0212C17.1  AC233644.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0212C17 sequenced_by:kribb upload_account_name:korea">
        <position start="97007" stop="100952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97307" g_stop="97328" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97329" i_stop="97791" i_length="463">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97792" g_stop="97833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="64" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97834" i_stop="99513" i_length="1680">
            <donor d_prob="0.800" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99514" g_stop="99678" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="229" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99679" i_stop="100382" i_length="704">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100383" g_stop="100659" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="506" r_length="277" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0212C17.1" gen_strand="+" ref_id="SGN-E283254" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0212C17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97307" e_stop="97328"/>
          <exon e_start="97792" e_stop="97833"/>
          <exon e_start="99514" e_stop="99678"/>
          <exon e_start="100383" e_stop="100659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTCTATCATTTGTTTTGGTAATTTATCTCCTCTTTCTCCATTTTACTTTTTCTATGAAAATTAATTTTTCTATTTGGAATCTCAAATTTCACCTCTTCTTCCTTGATTGTTCGGCCTTCTAATTGTGTGCTATTTTTGCTGATGTATCTCTTCCCTAATTTTTTGTTGTTTTAGTGCACTTTCTTTGATTTTAATCATTATGACAACTTTTAAATCGTCTCTTATTAGATTTTATATGTACTTATTAACAATTTTTTTCTAATTTATTCATTCATGTCTGGATTCTATCTCAAAGTCTCTTTTATAAATTTACTTTTTCGTTTGTGCTGTTAAAATCTATGTAACTAGATGTGCCTCCGCTTATTATTTTTTTAATTCTAACAAGTATTCTGTAGTTGCAACAACTAATTCAATTTAAGTGACACACTTAAGGTGTTTGATAGTATGCCTAAACTAACTAAATTTTTTTTTTTTTTACAGATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAGGTTGGTGCTTTGTTTCTACTAGATGTCTGTTGTTTATGTATATTTTATTTATTTATCCCAAGAAATGGTTTGTCCTTTGTTTGCATCTATTTCAATTGCAAGTTGTTGCTATTAGTTAAACTCTGTGTTAGCGAAAAAATTTAGATATAATGTACAGTTTTTTCAGCACTCTATTAAACTATAAATATTATTTTTATCAAGATAAAATATTTCTCGAAGTAAGAATGTCAACATATGAGGGCAATACATAGATTTTAAAAGACCAAGGACATCGGCTAGATGATAGAGTTATGGACTACTTTTACCTTTTTTTGGTTAAAGGTAAAGCATGAAGAAGTTGTACATGCATAAATTTAGATATAATGTGCAGTTTTTTCAGCACTCCATTAAACTGTAAATATTATTTTTATCAAGATAAAATATTTCTCGAAATAAGAATGTCAACATATAAGGGCAATACATAGATTTTAAAAGACCAAGGACATCGGCTAGATGATAGAGTTATGAACTATTTTTTCCTTTTTTTGGTTAAAGGTAAAGCATGAAGAAGTTGTACATGCATATGTGGTGTTCCGTGAAAGTTTTGAATAAGCTTTTCCTTGTTTTTTGGACAAAAAATTTTCTACTTCATTAGTCAATAAATCAATAAGTATGTTACTATGGACAACTTCAATCTCTTGTTATCATTTATATTTAGAAATATGTTTCAAATGTATAATATACTTCTCTTTATATAGTGAGGTGCTTTCTTTCTTAAATTTTTTCCACTCAAATTTTATTGGGGTGCTTAAATTTGATAATAATAGTTATCCTCTTAAACGAAAACTTCTTAGAGGACTAAATGAAGGATGGATTGAAGTACTCCATCATATCTATTTGATCTCTCTTAACTTTGATGGTTGAATAGGTGTATAATGTGATTTCAAGAATCTTCTTTCTCAAATTCGTAGTAGGATTCATGTATGTTGTCTTCAAATGGATGTTGTGAGTCGTATATTAGTACACAAAGGTGTTTTTCCGAGTTAACCCTCAAATCTGAGTAAATATTGTTTGGAGATGGTTAGCCCTTAACTCTAAAATGTTAACTCTATTTGTCTTTTCTAGACATATGGTTGCTTACATTCATTTTGTTCCTTCATGCTTCAATGACAATTAACATAGACATTTGTACTTCCTTTTGCTCCTGGATTTCTTTTATCATTAGTGTTGAACTACAACTCTTCATTTGATAAGATATTCATTTGGTTATAGAAGGTTCAAGCTCAAACTTAGTAAAATGTGTAGTACATGTTTCATGTCGAACATGATCTTTTTTATGGTCTTACCAACAAGTGAATGAATACCTCAATTTGGGATTATAGGAAGTCAAAATGTACAGCTGATTTCTTTTCCTAATCAACCGAAATAAGTATTTGACGAGAAACTATTGCAAGCTGTTGTTGAAACATTGCTATTGTGCCGACACTTTTAGTTTCAGGACAACTTTCTCAATGGCGAAATCAGGCCTCAACTTAATATTTGACATGTTTCCATTAAAGATGTCAATCTGATCCTTATTTGAGCTATCCTGAAGATTCAACATCATTGCATATTTCTCAACAAAAGTTGTCTACATCTATGTTAAATTTTAATTATTTGGAGTTTGGATACTGTTTAAAAATTAGAGTTTCATCTCTGCAGCTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAAGTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTGGTAAGCCTACAAATCCAGACCCAGATCATCGTTAGTTTTATTGCTTTCTGAATCATAGTAGTTTCAAGCTTAATGAGCTTGATTTTTTGATAAAGTAGAAATCCTCCTTGTTCATTTTCCATTACTGGGAGTTTCTGATCTGAGAATCTGCTATCTTTTAAACTACTGGTGTGAGGATTACTTTTGTAGTTTTTCATTGATCGGTTTTTGTTACTATCTTATTTCTTCTACTTTGATCATAGTGTTATATTGTTGTAGATACTGTTCAACATGCCTTGTTATGCTTTCACATAAATTACTTCTTTTATCGGATTGCTTTGATTTGTTTTTCGTTGAACCGACTGTCTATCAGAGAGGGACTCGAATTTGTGGGACTACATTATCTTCTTGTTGTTGTATTTTTGTTTCATCAATTGTTTTAGGATTTTCACAATACTGGTTGGTAGATACTAGGATTTTCACAATACTGATTGGTAGATATATATCTCCTTATTTAGAAATGAGAATTAAAAAGGACAAACACTATATCTTCTAATTGTACTAAAGGTAGTACAGATTGTATAGTAAATTTTGCTCTTTTTCATTGATGAACAAATATTTGTCTCATTTTGCTTGACTTTGTGTACAACTTTTGCACTATTTTCTTACAATTCTCTATAGATTTTTGCTAAGCTTGGTTTATTTTCTCAACTCTTTTTTTGTAGATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTAGACAAATTATGGT</genome_strand>
        <mrna_strand>AGTTTCTCTATCATTTGTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAATTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTNGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>212</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1145" PGL_stop="6507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1145" e_stop="1268"/>
            <exon e_start="3823" e_stop="4548"/>
            <exon e_start="6198" e_stop="6507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.743" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.910" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1145" e_stop="1268" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.743">
            <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3823" e_stop="4548" e_length="726"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.910">
            <gDNA_intron_boundary i_start="4549" i_stop="6197" i_length="1649"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="6198" e_stop="6507" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1145" stop="1268"/>
              <exon start="3823" stop="4548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1150" stop="1268"/>
              <exon start="3823" stop="4545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1181" stop="1268"/>
              <exon start="3823" stop="4307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1182" stop="1268"/>
              <exon start="3823" stop="4186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1193" stop="1268"/>
              <exon start="3823" stop="4190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1249" stop="1268"/>
              <exon start="3823" stop="4548"/>
              <exon start="6198" stop="6254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1250" stop="1268"/>
              <exon start="3823" stop="4301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3823" stop="4524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3977" stop="4371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4192" stop="4548"/>
              <exon start="6198" stop="6507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371401" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4253" stop="4548"/>
              <exon start="6198" stop="6507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4363" stop="4548"/>
              <exon start="6198" stop="6507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271449" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAACCTGTGTATGTCGCAAGCAAAAGAGTACAGAGACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC : TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG : ATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTTTATGTCATTCTGGTCGTCTATTTGATTTGT</gDNA_template>
            <first_frame> R  N  L  C  M  S  Q  A  K  E  Y  R  D  N  T  P  F  S  L  L  F  L  I  T  C  N  T  L  P  I  I  Q  S  P  V  F  H  L  L  L  Y   : L  T  K  T  S  I  F  A  R  V  P  S  S  S  P  T  F  L  T  K  V  K  I  L  L  P  T  P  M  E  V  K  L  W  N  D  K  R  E  R  E  M  Y  E  N  F  A  E  L  F  A  I  I  K  A  T  E  K  L  E  K  A  Y  V  R  D  I  I  S  P  A  E  Y  E  A  E  C  Q  K  L  I  A  H  F  K  T  L  S  S  T  L  K  D  T  V  P  S  I  E  R  F  H  D  T  Y  K  M  D  C  P  A  A  L  N  R  L  V  T  S  G  V  P  A  T  V  E  H  R  A  A  A  A  T  S  S  A  S  S  A  S  V  V  A  E  C  V  Q  N  F  I  T  A  M  D  S  L  K  L  N  M  I  A  V  D  Q  V  H  P  L  L  S  D  L  S  S  S  L  N  K  L  L  I  L  P  S  D  F  E  G  K  T  K  M  R  E  W  L  S  R  L  S  K  M  G  A  A  D  E  L  T  E  Q  Q  A  R  Q  L  H  F  D  L  E  S  S  Y  N  S  F  M  A  A  L  P  S  A  G  T  *  L  L  I  S   : D  P  Y  I  V  R  G  P  D  T  *  L  Q  Y  *  A  K  Q  L  G  I  C  N  E  A  A  V  S  V  P  S  Y  L  L  S  F  K  V  N  N  Y  K  T  L  V  W  T  T  Y  H  Q  H  V  N  Y  L  C  S  F  C  E  Q  L  E  E  K  *  M  I  I  N  S  E  T  N  C  T  I  K  S  G  E  T  I  D  *  C  I  C  T  T  L  C  F  M  S  F  W  S  S  I  *  F   </first_frame>
            <second_frame>  A  T  C  V  C  R  K  Q  K  S  T  E  T  I  P  L  S  L  S  Y  S  *  L  P  A  T  L  F  P  L  F  K  V  P  S  F  T  F  F  F  T  :  *  Q  R  L  A  S  L  R  V  S  H  P  L  L  Q  P  F  *  Q  R  S  K  Y  C  C  Q  L  P  W  R  L  N  Y  G  M  I  S  G  K  E  K  C  T  K  T  L  Q  S  S  L  L  *  *  R  Q  P  K  S  S  R  R  L  M  F  V  T  S  F  H  Q  L  N  M  K  L  N  A  R  S  *  L  L  I  S  K  L  Y  L  P  R  *  K  I  P  Y  L  A  L  S  D  F  M  T  P  T  K  W  I  A  L  L  P  *  T  G  L  *  P  L  G  C  L  P  L  W  S  T  V  P  P  L  L  H  H  L  H  P  Q  L  L  L  W  L  S  V  C  R  T  S  S  L  R  W  T  L  *  S  *  I  *  L  L  *  T  R  S  I  P  F  C  Q  T  Y  H  L  P  L  I  N  F  *  Y  F  H  L  I  L  R  G  R  Q  R  *  E  S  G  S  Q  G  C  Q  K  W  E  L  Q  M  S  *  Q  N  S  R  P  V  N  S  I  S  I  L  N  H  H  T  I  L  S  W  R  H  C  P  L  L  E  L  N  C  L  F  Q  :  I  H  I  S  *  G  V  Q  I  R  S  Y  N  I  R  P  N  S  *  E  Y  V  M  K  L  L  S  Q  S  L  A  I  Y  F  H  S  K  L  I  T  T  R  H  W  S  G  P  L  T  I  N  M  L  T  I  C  V  P  F  V  S  S  *  R  R  S  R  *  S  S  T  V  K  L  I  V  L  *  K  V  G  R  L  S  I  N  A  F  V  L  L  C  V  L  C  H  S  G  R  L  F  D  L  </second_frame>
            <third_frame>   Q  P  V  Y  V  A  S  K  R  V  Q  R  Q  Y  P  F  L  S  L  I  L  D  Y  L  Q  H  S  S  H  Y  S  K  S  R  L  S  P  S  S  L  P :   D  K  D  *  H  L  C  A  C  P  I  L  F  S  N  L  F  D  K  G  Q  N  I  V  A  N  S  H  G  G  *  T  M  E  *  *  A  G  K  R  N  V  R  K  L  C  R  A  L  C  Y  N  K  G  N  R  K  A  R  E  G  L  C  S  *  H  H  F  T  S  *  I  *  S  *  M  P  E  V  D  C  S  F  Q  N  F  I  F  H  V  E  R  Y  R  T  *  H  *  A  I  S  *  H  L  Q  N  G  L  P  C  C  L  K  P  A  C  D  L  W  G  A  C  H  C  G  A  P  C  R  R  C  Y  I  I  C  I  L  S  F  C  C  G  *  V  C  A  E  L  H  H  C  D  G  L  F  E  A  E  Y  D  C  C  R  P  G  P  S  P  F  V  R  P  I  I  F  P  *  *  T  F  N  T  S  I  *  F  *  G  E  D  K  D  E  R  V  A  L  K  A  V  K  N  G  S  C  R  *  V  D  R  T  A  G  P  S  T  P  F  R  S  *  I  I  I  Q  F  F  H  G  G  T  A  L  C  W  N  L  I  A  Y  F  R :   S  I  Y  R  K  G  S  R  Y  V  A  T  I  L  G  Q  T  A  R  N  M  *  *  S  C  C  L  S  P  *  L  F  T  F  I  Q  S  *  *  L  Q  D  T  G  L  D  H  L  P  S  T  C  *  L  F  V  F  L  L  *  A  A  R  G  E  V  D  D  H  Q  Q  *  N  *  L  Y  Y  K  K  W  G  D  Y  R  L  M  H  L  Y  Y  F  V  F  Y  V  I  L  V  V  Y  L  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1145" stop="1268"/>
                    <exon start="3823" stop="4535"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLCMSQAKEYRDNTPFSLLFLITCNTLPIIQSPVFHLLLYLTKTSIFARVPSSSPTFLTKVKILLPTPMEVKLWNDKREREMYENFAELFAIIKATEKLEKAYVRDIISPAEYEAECQKLIAHFKTLSSTLKDTVPSIERFHDTYKMDCPAALNRLVTSGVPATVEHRAAAATSSASSASVVAECVQNFITAMDSLKLNMIAVDQVHPLLSDLSSSLNKLLILPSDFEGKTKMREWLSRLSKMGAADELTEQQARQLHFDLESSYNSFMAALPSAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1145" e_stop="1268"/>
            <exon e_start="3823" e_stop="4884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.743" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1145" e_stop="1268" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.743">
            <gDNA_intron_boundary i_start="1269" i_stop="3822" i_length="2554"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="3823" e_stop="4884" e_length="1062"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1145" stop="1268"/>
              <exon start="3823" stop="4548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1150" stop="1268"/>
              <exon start="3823" stop="4545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1181" stop="1268"/>
              <exon start="3823" stop="4307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1182" stop="1268"/>
              <exon start="3823" stop="4186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1193" stop="1268"/>
              <exon start="3823" stop="4190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1219" stop="1268"/>
              <exon start="3823" stop="4626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1250" stop="1268"/>
              <exon start="3823" stop="4301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3823" stop="4524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3836" stop="4773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3977" stop="4371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4289" stop="4884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAACCTGTGTATGTCGCAAGCAAAAGAGTACAGAGACAATACCCCTTTCTCTCTCTTATTCTTGATTACCTGCAACACTCTTCCCATTATTCAAAGTCCCGTCTTTCACCTTCTTCTTTACC : TGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAGGTGATATGTTTGTACATATGTGGCTGAATTCTTGTTTTTTTCCTACAAAGTTTATACTACATATGATGCTTTATTTGGTCGAAGTGCTGATTGACGAGGATTCAGAAAAGAGTCTTGTAATTTATGGAACTTGTGTCTGGTGGTTCCATTTTATTCAATGAACTCAGCCCCAGACAAGATGCTTATTTGGTTTGCATATCTTTTCTTTTTGTTACATTAATCATATTACAAGGAAATATTGAGCTGTTAGATATGCTTTTGTAAATTTAAGTGGAAATTTTGATGTAAAACTTAGTTCCATGGTATTAAATCAACTCAAGAAATATCACATTTGTT</gDNA_template>
            <first_frame> R  N  L  C  M  S  Q  A  K  E  Y  R  D  N  T  P  F  S  L  L  F  L  I  T  C  N  T  L  P  I  I  Q  S  P  V  F  H  L  L  L  Y   : L  T  K  T  S  I  F  A  R  V  P  S  S  S  P  T  F  L  T  K  V  K  I  L  L  P  T  P  M  E  V  K  L  W  N  D  K  R  E  R  E  M  Y  E  N  F  A  E  L  F  A  I  I  K  A  T  E  K  L  E  K  A  Y  V  R  D  I  I  S  P  A  E  Y  E  A  E  C  Q  K  L  I  A  H  F  K  T  L  S  S  T  L  K  D  T  V  P  S  I  E  R  F  H  D  T  Y  K  M  D  C  P  A  A  L  N  R  L  V  T  S  G  V  P  A  T  V  E  H  R  A  A  A  A  T  S  S  A  S  S  A  S  V  V  A  E  C  V  Q  N  F  I  T  A  M  D  S  L  K  L  N  M  I  A  V  D  Q  V  H  P  L  L  S  D  L  S  S  S  L  N  K  L  L  I  L  P  S  D  F  E  G  K  T  K  M  R  E  W  L  S  R  L  S  K  M  G  A  A  D  E  L  T  E  Q  Q  A  R  Q  L  H  F  D  L  E  S  S  Y  N  S  F  M  A  A  L  P  S  A  G  T  *  L  L  I  S  G  D  M  F  V  H  M  W  L  N  S  C  F  F  P  T  K  F  I  L  H  M  M  L  Y  L  V  E  V  L  I  D  E  D  S  E  K  S  L  V  I  Y  G  T  C  V  W  W  F  H  F  I  Q  *  T  Q  P  Q  T  R  C  L  F  G  L  H  I  F  S  F  C  Y  I  N  H  I  T  R  K  Y  *  A  V  R  Y  A  F  V  N  L  S  G  N  F  D  V  K  L  S  S  M  V  L  N  Q  L  K  K  Y  H  I  C  </first_frame>
            <second_frame>  A  T  C  V  C  R  K  Q  K  S  T  E  T  I  P  L  S  L  S  Y  S  *  L  P  A  T  L  F  P  L  F  K  V  P  S  F  T  F  F  F  T  :  *  Q  R  L  A  S  L  R  V  S  H  P  L  L  Q  P  F  *  Q  R  S  K  Y  C  C  Q  L  P  W  R  L  N  Y  G  M  I  S  G  K  E  K  C  T  K  T  L  Q  S  S  L  L  *  *  R  Q  P  K  S  S  R  R  L  M  F  V  T  S  F  H  Q  L  N  M  K  L  N  A  R  S  *  L  L  I  S  K  L  Y  L  P  R  *  K  I  P  Y  L  A  L  S  D  F  M  T  P  T  K  W  I  A  L  L  P  *  T  G  L  *  P  L  G  C  L  P  L  W  S  T  V  P  P  L  L  H  H  L  H  P  Q  L  L  L  W  L  S  V  C  R  T  S  S  L  R  W  T  L  *  S  *  I  *  L  L  *  T  R  S  I  P  F  C  Q  T  Y  H  L  P  L  I  N  F  *  Y  F  H  L  I  L  R  G  R  Q  R  *  E  S  G  S  Q  G  C  Q  K  W  E  L  Q  M  S  *  Q  N  S  R  P  V  N  S  I  S  I  L  N  H  H  T  I  L  S  W  R  H  C  P  L  L  E  L  N  C  L  F  Q  V  I  C  L  Y  I  C  G  *  I  L  V  F  F  L  Q  S  L  Y  Y  I  *  C  F  I  W  S  K  C  *  L  T  R  I  Q  K  R  V  L  *  F  M  E  L  V  S  G  G  S  I  L  F  N  E  L  S  P  R  Q  D  A  Y  L  V  C  I  S  F  L  F  V  T  L  I  I  L  Q  G  N  I  E  L  L  D  M  L  L  *  I  *  V  E  I  L  M  *  N  L  V  P  W  Y  *  I  N  S  R  N  I  T  F  V </second_frame>
            <third_frame>   Q  P  V  Y  V  A  S  K  R  V  Q  R  Q  Y  P  F  L  S  L  I  L  D  Y  L  Q  H  S  S  H  Y  S  K  S  R  L  S  P  S  S  L  P :   D  K  D  *  H  L  C  A  C  P  I  L  F  S  N  L  F  D  K  G  Q  N  I  V  A  N  S  H  G  G  *  T  M  E  *  *  A  G  K  R  N  V  R  K  L  C  R  A  L  C  Y  N  K  G  N  R  K  A  R  E  G  L  C  S  *  H  H  F  T  S  *  I  *  S  *  M  P  E  V  D  C  S  F  Q  N  F  I  F  H  V  E  R  Y  R  T  *  H  *  A  I  S  *  H  L  Q  N  G  L  P  C  C  L  K  P  A  C  D  L  W  G  A  C  H  C  G  A  P  C  R  R  C  Y  I  I  C  I  L  S  F  C  C  G  *  V  C  A  E  L  H  H  C  D  G  L  F  E  A  E  Y  D  C  C  R  P  G  P  S  P  F  V  R  P  I  I  F  P  *  *  T  F  N  T  S  I  *  F  *  G  E  D  K  D  E  R  V  A  L  K  A  V  K  N  G  S  C  R  *  V  D  R  T  A  G  P  S  T  P  F  R  S  *  I  I  I  Q  F  F  H  G  G  T  A  L  C  W  N  L  I  A  Y  F  R  *  Y  V  C  T  Y  V  A  E  F  L  F  F  S  Y  K  V  Y  T  T  Y  D  A  L  F  G  R  S  A  D  *  R  G  F  R  K  E  S  C  N  L  W  N  L  C  L  V  V  P  F  Y  S  M  N  S  A  P  D  K  M  L  I  W  F  A  Y  L  F  F  L  L  H  *  S  Y  Y  K  E  I  L  S  C  *  I  C  F  C  K  F  K  W  K  F  *  C  K  T  *  F  H  G  I  K  S  T  Q  E  I  S  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1145" stop="1268"/>
                    <exon start="3823" stop="4535"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLCMSQAKEYRDNTPFSLLFLITCNTLPIIQSPVFHLLLYLTKTSIFARVPSSSPTFLTKVKILLPTPMEVKLWNDKREREMYENFAELFAIIKATEKLEKAYVRDIISPAEYEAECQKLIAHFKTLSSTLKDTVPSIERFHDTYKMDCPAALNRLVTSGVPATVEHRAAAATSSASSASVVAECVQNFITAMDSLKLNMIAVDQVHPLLSDLSSSLNKLLILPSDFEGKTKMREWLSRLSKMGAADELTEQQARQLHFDLESSYNSFMAALPSAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3814" e_stop="4548"/>
            <exon e_start="6198" e_stop="6507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.910" e_score="0.996"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="3814" e_stop="4548" e_length="735"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.910">
            <gDNA_intron_boundary i_start="4549" i_stop="6197" i_length="1649"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="6198" e_stop="6507" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3814" stop="4436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3823" stop="4524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3977" stop="4371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4192" stop="4548"/>
              <exon start="6198" stop="6507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371401" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4253" stop="4548"/>
              <exon start="6198" stop="6507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4363" stop="4548"/>
              <exon start="6198" stop="6507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271449" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTGCAGTGACAAAGACTAGCATCTTTGCGCGTGTCCCATCCTCTTCTCCAACCTTTTTGACAAAGGTCAAAATATTGTTGCCAACTCCCATGGAGGTTAAACTATGGAATGATAAGCGGGAAAGAGAAATGTACGAAAACTTTGCAGAGCTCTTTGCTATAATAAAGGCAACCGAAAAGCTCGAGAAGGCTTATGTTCGTGACATCATTTCACCAGCTGAATATGAAGCTGAATGCCAGAAGTTGATTGCTCATTTCAAAACTTTATCTTCCACGTTGAAAGATACCGTACCTAGCATTGAGCGATTTCATGACACCTACAAAATGGATTGCCCTGCTGCCTTAAACCGGCTTGTGACCTCTGGGGTGCCTGCCACTGTGGAGCACCGTGCCGCCGCTGCTACATCATCTGCATCCTCAGCTTCTGTTGTGGCTGAGTGTGTGCAGAACTTCATCACTGCGATGGACTCTTTGAAGCTGAATATGATTGCTGTAGACCAGGTCCATCCCCTTTTGTCAGACCTATCATCTTCCCTTAATAAACTTTTAATACTTCCATCTGATTTTGAGGGGAAGACAAAGATGAGAGAGTGGCTCTCAAGGCTGTCAAAAATGGGAGCTGCAGATGAGTTGACAGAACAGCAGGCCCGTCAACTCCATTTCGATCTTGAATCATCATACAATTCTTTCATGGCGGCACTGCCCTCTGCTGGAACTTAATTGCTTATTTCAG : ATCCATATATCGTAAGGGGTCCAGATACGTAGCTACAATATTAGGCCAAACAGCTAGGAATATGTAATGAAGCTGCTGTCTCAGTCCCTAGCTATTTACTTTCATTCAAAGTTAATAACTACAAGACACTGGTCTGGACCACTTACCATCAACATGTTAACTATTTGTGTTCCTTTTGTGAGCAGCTAGAGGAGAAGTAGATGATCATCAACAGTGAAACTAATTGTACTATAAAAAGTGGGGAGACTATCGATTAATGCATTTGTACTACTTTGTGTTTTATGTCATTCTGGTCGTCTATTTGATTTGT</gDNA_template>
            <first_frame> F  L  Q  *  Q  R  L  A  S  L  R  V  S  H  P  L  L  Q  P  F  *  Q  R  S  K  Y  C  C  Q  L  P  W  R  L  N  Y  G  M  I  S  G  K  E  K  C  T  K  T  L  Q  S  S  L  L  *  *  R  Q  P  K  S  S  R  R  L  M  F  V  T  S  F  H  Q  L  N  M  K  L  N  A  R  S  *  L  L  I  S  K  L  Y  L  P  R  *  K  I  P  Y  L  A  L  S  D  F  M  T  P  T  K  W  I  A  L  L  P  *  T  G  L  *  P  L  G  C  L  P  L  W  S  T  V  P  P  L  L  H  H  L  H  P  Q  L  L  L  W  L  S  V  C  R  T  S  S  L  R  W  T  L  *  S  *  I  *  L  L  *  T  R  S  I  P  F  C  Q  T  Y  H  L  P  L  I  N  F  *  Y  F  H  L  I  L  R  G  R  Q  R  *  E  S  G  S  Q  G  C  Q  K  W  E  L  Q  M  S  *  Q  N  S  R  P  V  N  S  I  S  I  L  N  H  H  T  I  L  S  W  R  H  C  P  L  L  E  L  N  C  L  F  Q  :  I  H  I  S  *  G  V  Q  I  R  S  Y  N  I  R  P  N  S  *  E  Y  V  M  K  L  L  S  Q  S  L  A  I  Y  F  H  S  K  L  I  T  T  R  H  W  S  G  P  L  T  I  N  M  L  T  I  C  V  P  F  V  S  S  *  R  R  S  R  *  S  S  T  V  K  L  I  V  L  *  K  V  G  R  L  S  I  N  A  F  V  L  L  C  V  L  C  H  S  G  R  L  F  D  L  </first_frame>
            <second_frame>  S  C  S  D  K  D  *  H  L  C  A  C  P  I  L  F  S  N  L  F  D  K  G  Q  N  I  V  A  N  S  H  G  G  *  T  M  E  *  *  A  G  K  R  N  V  R  K  L  C  R  A  L  C  Y  N  K  G  N  R  K  A  R  E  G  L  C  S  *  H  H  F  T  S  *  I  *  S  *  M  P  E  V  D  C  S  F  Q  N  F  I  F  H  V  E  R  Y  R  T  *  H  *  A  I  S  *  H  L  Q  N  G  L  P  C  C  L  K  P  A  C  D  L  W  G  A  C  H  C  G  A  P  C  R  R  C  Y  I  I  C  I  L  S  F  C  C  G  *  V  C  A  E  L  H  H  C  D  G  L  F  E  A  E  Y  D  C  C  R  P  G  P  S  P  F  V  R  P  I  I  F  P  *  *  T  F  N  T  S  I  *  F  *  G  E  D  K  D  E  R  V  A  L  K  A  V  K  N  G  S  C  R  *  V  D  R  T  A  G  P  S  T  P  F  R  S  *  I  I  I  Q  F  F  H  G  G  T  A  L  C  W  N  L  I  A  Y  F  R :   S  I  Y  R  K  G  S  R  Y  V  A  T  I  L  G  Q  T  A  R  N  M  *  *  S  C  C  L  S  P  *  L  F  T  F  I  Q  S  *  *  L  Q  D  T  G  L  D  H  L  P  S  T  C  *  L  F  V  F  L  L  *  A  A  R  G  E  V  D  D  H  Q  Q  *  N  *  L  Y  Y  K  K  W  G  D  Y  R  L  M  H  L  Y  Y  F  V  F  Y  V  I  L  V  V  Y  L  I  C </second_frame>
            <third_frame>   L  A  V  T  K  T  S  I  F  A  R  V  P  S  S  S  P  T  F  L  T  K  V  K  I  L  L  P  T  P  M  E  V  K  L  W  N  D  K  R  E  R  E  M  Y  E  N  F  A  E  L  F  A  I  I  K  A  T  E  K  L  E  K  A  Y  V  R  D  I  I  S  P  A  E  Y  E  A  E  C  Q  K  L  I  A  H  F  K  T  L  S  S  T  L  K  D  T  V  P  S  I  E  R  F  H  D  T  Y  K  M  D  C  P  A  A  L  N  R  L  V  T  S  G  V  P  A  T  V  E  H  R  A  A  A  A  T  S  S  A  S  S  A  S  V  V  A  E  C  V  Q  N  F  I  T  A  M  D  S  L  K  L  N  M  I  A  V  D  Q  V  H  P  L  L  S  D  L  S  S  S  L  N  K  L  L  I  L  P  S  D  F  E  G  K  T  K  M  R  E  W  L  S  R  L  S  K  M  G  A  A  D  E  L  T  E  Q  Q  A  R  Q  L  H  F  D  L  E  S  S  Y  N  S  F  M  A  A  L  P  S  A  G  T  *  L  L  I  S   : D  P  Y  I  V  R  G  P  D  T  *  L  Q  Y  *  A  K  Q  L  G  I  C  N  E  A  A  V  S  V  P  S  Y  L  L  S  F  K  V  N  N  Y  K  T  L  V  W  T  T  Y  H  Q  H  V  N  Y  L  C  S  F  C  E  Q  L  E  E  K  *  M  I  I  N  S  E  T  N  C  T  I  K  S  G  E  T  I  D  *  C  I  C  T  T  L  C  F  M  S  F  W  S  S  I  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3816" stop="4535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAVTKTSIFARVPSSSPTFLTKVKILLPTPMEVKLWNDKREREMYENFAELFAIIKATEKLEKAYVRDIISPAEYEAECQKLIAHFKTLSSTLKDTVPSIERFHDTYKMDCPAALNRLVTSGVPATVEHRAAAATSSASSASVVAECVQNFITAMDSLKLNMIAVDQVHPLLSDLSSSLNKLLILPSDFEGKTKMREWLSRLSKMGAADELTEQQARQLHFDLESSYNSFMAALPSAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16303" PGL_stop="17007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16303" e_stop="16544"/>
            <exon e_start="16630" e_stop="16747"/>
            <exon e_start="16909" e_stop="17007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16303" e_stop="16544" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16545" i_stop="16629" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16630" e_stop="16747" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16748" i_stop="16908" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16909" e_stop="17007" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16303" stop="16544"/>
              <exon start="16630" stop="16747"/>
              <exon start="16909" stop="17007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAGGTATTCAAGATGTTTAATAACCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTC : CTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAG : GCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCA</gDNA_template>
            <first_frame> E  K  V  F  K  M  F  N  N  H  Q  H  L  L  D  I  S  S  S  A  Q  R  T  P  D  N  E  L  D  F  I  R  D  E  E  F  D  S  N  S  G  A  D  N  M  E  A  P  N  S  G  D  D  D  Q  A  D  P  N  Q  P  P  N  K  K  K  R  Y  H  R  H  T  Q  N  Q  I  Q  E  M  E  S :   F  Y  K  E  C  N  H  P  D  D  K  Q  R  K  E  L  G  R  R  L  G  L  E  P  L  Q  V  K  F  W  F  Q  N  K  R  T  Q  M  K  :  A  Q  H  E  R  C  E  N  T  Q  L  R  N  E  N  E  K  L  R  A  E  N  I  R  Y  K  E  A  L  S  N  A  A </first_frame>
            <second_frame>  R  R  Y  S  R  C  L  I  T  T  S  T  C  S  I  Y  R  P  Q  L  N  E  H  L  I  T  S  W  I  S  F  V  M  K  S  L  I  A  T  L  V  L  I  T  W  K  L  P  I  Q  V  M  T  I  K  L  I  Q  T  N  L  Q  T  R  R  S  V  I  I  A  T  L  R  I  R  F  R  K  W  S   : P  F  T  R  N  A  I  I  Q  M  T  S  K  G  R  N  W  E  E  D  L  V  W  S  H  Y  K  *  N  F  G  S  R  T  S  V  L  R  *  R :   L  N  M  S  D  V  R  T  H  S  *  G  M  K  M  R  S  F  A  L  R  T  *  G  T  K  K  L  *  V  M  Q   </second_frame>
            <third_frame>   E  G  I  Q  D  V  *  *  P  P  A  L  A  R  Y  I  V  L  S  S  T  N  T  *  *  R  V  G  F  H  S  *  *  R  V  *  *  Q  L  W  C  *  *  H  G  S  S  Q  F  R  *  *  R  S  S  *  S  K  P  T  S  K  Q  E  E  A  L  S  S  P  H  S  E  S  D  S  G  N  G  V  :  L  L  Q  G  M  Q  S  S  R  *  Q  A  K  E  G  I  G  K  K  T  W  F  G  A  I  T  S  E  I  L  V  P  E  Q  A  Y  S  D  E   : G  S  T  *  A  M  *  E  H  T  V  E  E  *  K  *  E  A  S  R  *  E  H  K  V  Q  R  S  F  E  *  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16303" stop="16544"/>
                    <exon start="16630" stop="16747"/>
                    <exon start="16909" stop="17007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVFKMFNNHQHLLDISSSAQRTPDNELDFIRDEEFDSNSGADNMEAPNSGDDDQADPNQPPNKKKRYHRHTQNQIQEMESFYKECNHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMKAQHERCENTQLRNENEKLRAENIRYKEALSNAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17018" PGL_stop="18364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17018" e_stop="17097"/>
            <exon e_start="17520" e_stop="17957"/>
            <exon e_start="18041" e_stop="18142"/>
            <exon e_start="18252" e_stop="18364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.618" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17018" e_stop="17097" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17098" i_stop="17519" i_length="422"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17520" e_stop="17957" e_length="438"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.618">
            <gDNA_intron_boundary i_start="17958" i_stop="18040" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="18041" e_stop="18142" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18143" i_stop="18251" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18252" e_stop="18364" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17018" stop="17097"/>
              <exon start="17520" stop="17957"/>
              <exon start="18041" stop="18142"/>
              <exon start="18252" stop="18364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAG : ATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTG : AACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACAATGGAGCATTGCAAGTG : ATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCT</gDNA_template>
            <first_frame> V  E  G  Q  Q  L  *  E  R  C  H  L  M  S  I  S  *  G  L  K  M  L  V  L  E  M  R :   L  T  G  *  L  E  *  L  E  S  M  L  V  N  Q  P  L  D  I  L  I  N  F  L  F  L  S  P  K  L  L  G  F  W  I  L  L  L  G  L  N  R  A  C  L  E  K  C  T  L  L  V  T  F  *  E  L  L  L  R  A  L  Q  M  L  R  S  P  W  S  L  S  L  L  L  L  Q  W  R  N  L  *  G  W  L  K  L  K  S  H  Y  G  C  Q  A  Q  A  L  R  L  Y  V  S  K  N  M  L  V  F  S  L  E  A  L  D  L  S  Q  L  H  S  I  L  K  P  H  E  N  L  L  L  *  L  *  I  I  S  I  *  L  R  F  *  W  M  * :   T  N  G  L  L  F  L  L  V  W  C  Q  K  Q  *  L  L  K  S  Y  Q  L  V  S  Q  E  I  T  M  E  H  C  K  * :   *  Q  Q  N  F  K  F  H  L  H  L  F  Q  L  G  R  T  I  S  *  D  T  V  N  N  M  V  K  G  L  G  *  W  L  M  F  P  </first_frame>
            <second_frame>  W  R  A  S  S  Y  R  R  D  V  I  *  *  A  S  V  E  D  *  K  C  S  S  *  R  *   : D  *  Q  D  N  W  N  S  W  K  V  C  W  *  I  S  P  W  I  F  S  S  T  S  S  S  S  A  R  S  S  S  G  S  G  S  C  F  W  A  S  I  G  P  A  W  R  N  V  R  C  W  *  P  S  K  N  C  C  Y  G  P  Y  R  C  *  E  A  R  G  H  *  A  C  C  Y  C  N  G  G  T  Y  K  D  G  S  N  *  R  A  I  M  V  A  K  L  R  L  *  D  F  M  *  A  R  I  C  S  Y  F  P  S  R  P  W  T  *  A  S  Y  T  Q  F  *  S  L  T  R  I  C  C  C  D  Y  E  S  Y  Q  F  S  *  D  F  D  G  C   : E  P  M  D  Y  C  F  C  W  S  G  V  K  S  N  D  S  *  S  L  I  N  W  C  R  R  K  S  Q  W  S  I  A  S   : D  D  S  R  I  S  S  S  I  S  T  C  S  N  S  G  E  L  F  L  K  I  L  *  T  T  W  *  R  D  L  G  S  G  *  C  F  P </second_frame>
            <third_frame>   G  G  P  A  A  I  G  E  M  S  F  D  E  H  Q  L  R  I  E  N  A  R  L  R  D  E  :  I  D  R  I  T  G  I  A  G  K  Y  V  G  K  S  A  L  G  Y  S  H  Q  L  P  L  P  Q  P  E  A  P  R  V  L  D  L  A  F  G  P  Q  S  G  L  L  G  E  M  Y  A  A  G  D  L  L  R  T  A  V  T  G  L  T  D  A  E  K  P  V  V  I  E  L  A  V  T  A  M  E  E  L  I  R  M  A  Q  T  E  E  P  L  W  L  P  S  S  G  S  E  T  L  C  E  Q  E  Y  A  R  I  F  P  R  G  L  G  P  K  P  A  T  L  N  S  E  A  S  R  E  S  A  V  V  I  M  N  H  I  N  L  V  E  I  L  M  D  V  :  N  Q  W  T  T  V  F  A  G  L  V  S  K  A  M  T  L  E  V  L  S  T  G  V  A  G  N  H  N  G  A  L  Q  V  :  M  T  A  E  F  Q  V  P  S  P  L  V  P  T  R  E  N  Y  F  L  R  Y  C  K  Q  H  G  E  G  T  W  V  V  V  D  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17020" stop="17097"/>
                    <exon start="17520" stop="17957"/>
                    <exon start="18041" stop="18142"/>
                    <exon start="18252" stop="18362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGPAAIGEMSFDEHQLRIENARLRDEIDRITGIAGKYVGKSALGYSHQLPLPQPEAPRVLDLAFGPQSGLLGEMYAAGDLLRTAVTGLTDAEKPVVIELAVTAMEELIRMAQTEEPLWLPSSGSETLCEQEYARIFPRGLGPKPATLNSEASRESAVVIMNHINLVEILMDVNQWTTVFAGLVSKAMTLEVLSTGVAGNHNGALQVMTAEFQVPSPLVPTRENYFLRYCKQHGEGTWVVVDVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37115" PGL_stop="36308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37115" e_stop="36308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="37115" e_stop="36308" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37115" stop="36308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37113" stop="36310"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37774" PGL_stop="37126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37774" e_stop="37126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="37774" e_stop="37126" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37774" stop="37126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37773" stop="37389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37773" stop="37126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="45020" PGL_stop="44608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45020" e_stop="44749"/>
            <exon e_start="44624" e_stop="44608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.980" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="45020" e_stop="44749" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.980">
            <gDNA_intron_boundary i_start="44748" i_stop="44625" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44624" e_stop="44608" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45020" stop="44749"/>
              <exon start="44624" stop="44608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280219" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGTCGTCCACCTCTAACTTTCTCTCTTCTCCTAATTCTTCTTCAACTCTCTATTTTTGTACCATTTCCCATTTTTCTCTTTCTTTCCATTTTTCATTTCTCACATTTTCCCACTTTGGCCTCTTTTCTTGATTTCAAACTTTTTTTTTTTTTGCATGGTTATTACATTTTTATTATGTCTAGATTACTTGAAGAAAGATGATGGGCAATGCAGCAGTAAGTTGAGGAAAAGTAGTAACCCTTTCATTTCTATCAGATTTTATCAAGAAAG : GCGAAGGAATTGGTTCT</gDNA_template>
            <first_frame> V  V  V  H  L  *  L  S  L  F  S  *  F  F  F  N  S  L  F  L  Y  H  F  P  F  F  S  F  F  P  F  F  I  S  H  I  F  P  L  W  P  L  F  L  I  S  N  F  F  F  F  C  M  V  I  T  F  L  L  C  L  D  Y  L  K  K  D  D  G  Q  C  S  S  K  L  R  K  S  S  N  P  F  I  S  I  R  F  Y  Q  E  R :   R  R  N  W  F  </first_frame>
            <second_frame>  W  S  S  T  S  N  F  L  S  S  P  N  S  S  S  T  L  Y  F  C  T  I  S  H  F  S  L  S  F  H  F  S  F  L  T  F  S  H  F  G  L  F  S  *  F  Q  T  F  F  F  F  A  W  L  L  H  F  Y  Y  V  *  I  T  *  R  K  M  M  G  N  A  A  V  S  *  G  K  V  V  T  L  S  F  L  S  D  F  I  K  K   : G  E  G  I  G  S </second_frame>
            <third_frame>   G  R  P  P  L  T  F  S  L  L  L  I  L  L  Q  L  S  I  F  V  P  F  P  I  F  L  F  L  S  I  F  H  F  S  H  F  P  T  L  A  S  F  L  D  F  K  L  F  F  F  L  H  G  Y  Y  I  F  I  M  S  R  L  L  E  E  R  *  W  A  M  Q  Q  *  V  E  E  K  *  *  P  F  H  F  Y  Q  I  L  S  R  K  :  A  K  E  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44984" stop="44749"/>
                    <exon start="44624" stop="44609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFNSLFLYHFPFFSFFPFFISHIFPLWPLFLISNFFFFCMVITFLLCLDYLKKDDGQCSSKLRKSSNPFISIRFYQERRRNWF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45018" stop="44818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRPPLTFSLLLILLQLSIFVPFPIFLFLSIFHFSHFPTLASFLDFKLFFFLHGYYIFIMSRLLEER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="54634" PGL_stop="52356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54634" e_stop="53652"/>
            <exon e_start="53526" e_stop="52667"/>
            <exon e_start="52375" e_stop="52356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="54634" e_stop="53652" e_length="983"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53651" i_stop="53527" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53526" e_stop="52667" e_length="860"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52666" i_stop="52376" i_length="291"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="52375" e_stop="52356" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54634" stop="54313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54611" stop="54107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54601" stop="54100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54601" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54601" stop="54137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54601" stop="54141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54598" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="53769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="53835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="53873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="53925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="53931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="53996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54590" stop="54091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54589" stop="54041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54587" stop="54192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54577" stop="54271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54572" stop="54035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54571" stop="54263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54566" stop="54003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54565" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54542" stop="54103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54527" stop="54101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54416" stop="53988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54409" stop="54068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54235" stop="53652"/>
              <exon start="53526" stop="53513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54190" stop="53714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54184" stop="53700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54171" stop="53652"/>
              <exon start="53526" stop="53503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54062" stop="53652"/>
              <exon start="53526" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53995" stop="53652"/>
              <exon start="53526" stop="53330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53778" stop="53652"/>
              <exon start="53526" stop="53073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53749" stop="53652"/>
              <exon start="53526" stop="53154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53704" stop="53652"/>
              <exon start="53526" stop="53166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53194" stop="52667"/>
              <exon start="52375" stop="52356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53054" stop="52690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATTCCACTTTGGTAGTAATTAAGTCATGACTACTAATTATTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGATGGGACTTGGGAACCTAACGGCCCAAGCCCATTTTGATGTTCATTCATGGTTAAGTAGCATCCTCACGAACCATGTTACTTGCATTGATGGTCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTAGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAATTTATAAAGAAAATGTTGAGATTGGGAAAACTAAGAAGAATTTAATGCTTGTGGGTGATGGCATGGATGCAACTATTATTACTGGCAACTTGAATGTTATCGATGGCTCAACAACTTTCAAATCTGCAACTGTTG : CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCACTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTAGCAGCCCGAAAGCCCATGAGCGGACAGAGTAACATGGTTACGGCCCAAGGTCGTGAAGATCCAAACCAAAATACAGGAACTTCAATTCAAAATTGTGACATTATTCCTAGTTCGGACCTTGAGCCAGTGAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAGGCGTATTCACGGACCGTGTATATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAGTGGGACGGTGATTTTGCATTGAAAACATTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGAATTAGTAAGAGAGTAAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAGGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGAAGGACTCTGACAAACTTGTTTAATTTATTGATTTTAATTAAGGTTGTTTCTAATAATGTACAAATGAGCTGTGGCTCTCCGGTGTGAATTCTATCAATCATCACTAATTGATCAAATTAGTAATAAACTTGACAGGTATTATTTTAATTAAACCTATATATAAGAGACTTTTTTATGT : GACAAAGAAAGGAAACAAAA</gDNA_template>
            <first_frame> L  I  P  L  W  *  *  L  S  H  D  Y  *  L  F  L  S  T  I  V  R  F  S  Q  N  K  I  F  L  F  Y  *  S  S  L  C  A  S  L  L  S  C  Y  C  G  L  S  W  I  H  F  N  L  G  H  Q  S  Y  I  N  F  L  D  N  S  C  L  *  Y  G  P  *  S  A  I  L  L  S  H  A  V  *  G  C  T  C  W  S  D  G  Y  K  N  S  *  F  A  T  D  G  F  A  *  I  I  V  K  N  P  R  D  D  P  F  G  E  Q  C  E  W  S  D  Q  *  W  P  G  T  S  S  S  R  R  L  F  R  V  D  G  F  V  K  G  *  I  N  G  L  H  D  G  T  W  E  P  N  G  P  S  P  F  *  C  S  F  M  V  K  *  H  P  H  E  P  C  Y  L  H  *  W  S  K  W  P  G  P  V  Y  Y  G  A  Y  V  E  *  F  S  S  K  S  K  D  F  L  G  L  D  G  C  N  C  T  T  K  E  Y  C  T  N  S  *  *  W  I  A  L  M  G  *  C  *  *  *  K  T  F  A  T  F  S  K  C  N  S  S  Q  C  C  S  G  *  R  W  Q  W  K  I  Q  N  R  K  R  S  S  C  F  C  S  R  *  *  *  D  S  I  C  Y  L  C  Q  K  R  N  L  *  R  K  C  *  D  W  E  N  *  E  E  F  N  A  C  G  *  W  H  G  C  N  Y  Y  Y  W  Q  L  E  C  Y  R  W  L  N  N  F  Q  I  C  N  C  C :   C  C  W  G  W  I  H  S  P  R  Y  T  I  P  K  H  S  R  A  T  K  A  P  S  S  G  P  S  C  W  S  R  S  V  R  Y  Q  P  L  Q  N  G  C  I  P  G  H  S  L  Y  P  H  S  P  S  I  L  Q  R  L  L  H  H  W  H  C  R  F  Y  L  W  *  R  S  S  C  V  P  K  L  *  T  S  S  P  K  A  H  E  R  T  E  *  H  G  Y  G  P  R  S  *  R  S  K  P  K  Y  R  N  F  N  S  K  L  *  H  Y  S  *  F  G  P  *  A  S  E  R  V  R  E  D  I  F  G  Q  T  M  E  G  V  F  T  D  R  V  Y  A  V  Q  H  W  R  P  Y  *  S  S  R  L  V  R  V  G  R  *  F  C  I  E  N  I  V  L  W  *  V  H  E  Q  R  S  W  C  W  N  *  *  E  S  K  L  A  W  L  S  *  S  F  N  N  I  R  G  H  K  V  H  C  G  S  A  D  S  G  S  S  M  V  K  I  Y  W  C  R  L  H  *  R  T  L  T  N  L  F  N  L  L  I  L  I  K  V  V  S  N  N  V  Q  M  S  C  G  S  P  V  *  I  L  S  I  I  T  N  *  S  N  *  *  *  T  *  Q  V  L  F  *  L  N  L  Y  I  R  D  F  F  M   : *  Q  R  K  E  T  K </first_frame>
            <second_frame>  S  F  H  F  G  S  N  *  V  M  T  T  N  Y  S  S  Q  P  L  L  D  S  P  K  T  K  S  S  S  S  T  K  A  L  Y  V  L  L  S  L  A  A  I  V  G  S  V  G  F  I  S  I  W  A  I  N  R  T  S  I  S  L  T  T  R  V  C  D  T  A  H  D  Q  P  S  C  L  A  M  L  S  E  V  A  P  A  G  L  M  D  T  K  T  V  D  L  L  Q  M  V  L  H  K  S  S  L  K  I  H  E  T  I  H  L  A  S  N  V  N  G  R  I  N  N  G  Q  E  Q  V  A  L  E  D  C  L  E  L  M  D  L  S  R  D  R  L  M  D  S  M  M  G  L  G  N  L  T  A  Q  A  H  F  D  V  H  S  W  L  S  S  I  L  T  N  H  V  T  C  I  D  G  L  N  G  Q  V  R  S  I  M  E  P  M  L  N  D  L  V  A  R  A  R  T  S  L  A  L  M  V  A  I  A  P  Q  K  N  I  V  P  T  V  S  D  G  L  P  S  W  V  S  A  N  D  R  R  L  L  Q  L  S  A  N  A  I  A  A  N  V  V  V  A  K  D  G  S  G  K  Y  K  T  V  K  E  A  V  A  S  A  P  D  N  S  K  T  R  Y  V  I  Y  V  K  K  G  I  Y  K  E  N  V  E  I  G  K  T  K  K  N  L  M  L  V  G  D  G  M  D  A  T  I  I  T  G  N  L  N  V  I  D  G  S  T  T  F  K  S  A  T  V   : A  A  V  G  D  G  F  I  A  Q  D  I  Q  F  Q  N  T  A  G  P  Q  K  H  Q  A  V  A  L  R  V  G  A  D  Q  S  V  I  N  R  C  K  M  D  A  F  Q  D  T  L  Y  T  H  T  L  R  Q  F  Y  R  D  C  Y  I  T  G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  N  S  K  L  A  A  R  K  P  M  S  G  Q  S  N  M  V  T  A  Q  G  R  E  D  P  N  Q  N  T  G  T  S  I  Q  N  C  D  I  I  P  S  S  D  L  E  P  V  K  G  S  V  K  T  Y  L  G  R  P  W  K  A  Y  S  R  T  V  Y  M  Q  S  N  I  G  D  H  I  D  P  A  G  W  S  E  W  D  G  D  F  A  L  K  T  L  Y  Y  G  E  Y  M  N  K  G  A  G  A  G  I  S  K  R  V  N  W  P  G  Y  H  K  A  L  T  T  S  E  A  T  K  F  T  V  G  Q  L  I  Q  G  A  A  W  L  K  S  T  G  V  A  Y  T  E  G  L  *  Q  T  C  L  I  Y  *  F  *  L  R  L  F  L  I  M  Y  K  *  A  V  A  L  R  C  E  F  Y  Q  S  S  L  I  D  Q  I  S  N  K  L  D  R  Y  Y  F  N  *  T  Y  I  *  E  T  F  L  C  :  D  K  E  R  K  Q   </second_frame>
            <third_frame>   H  S  T  L  V  V  I  K  S  *  L  L  I  I  P  L  N  H  C  *  I  L  P  K  Q  N  L  P  L  L  L  K  L  S  M  C  F  S  P  *  L  L  L  W  A  Q  L  D  S  F  Q  S  G  P  S  I  V  H  Q  F  P  *  Q  L  V  F  V  I  R  P  M  I  S  H  L  A  *  P  C  C  L  R  L  H  L  L  V  *  W  I  Q  K  Q  L  I  C  Y  R  W  F  C  I  N  H  R  *  K  S  T  R  R  S  I  W  R  A  M  *  M  V  G  S  I  M  A  R  N  K  *  L  *  K  I  V  *  S  *  W  I  C  Q  G  I  D  *  W  T  P  *  W  D  L  G  T  *  R  P  K  P  I  L  M  F  I  H  G  *  V  A  S  S  R  T  M  L  L  A  L  M  V  *  M  A  R  S  G  L  L  W  S  L  C  *  M  I  *  *  Q  E  Q  G  L  P  W  P  *  W  L  Q  L  H  H  K  R  I  L  Y  Q  Q  L  V  M  D  C  P  H  G  L  V  L  M  I  E  D  F  C  N  F  Q  Q  M  Q  *  Q  P  M  L  *  W  L  K  M  A  V  E  N  T  K  P  *  K  K  Q  L  L  L  L  Q  I  I  V  R  L  D  M  L  F  M  S  K  K  E  F  I  K  K  M  L  R  L  G  K  L  R  R  I  *  C  L  W  V  M  A  W  M  Q  L  L  L  L  A  T  *  M  L  S  M  A  Q  Q  L  S  N  L  Q  L  L  :  L  L  L  G  M  D  S  *  P  K  I  Y  N  S  K  T  Q  Q  G  H  K  S  T  K  Q  W  P  F  V  L  E  Q  I  S  P  L  S  T  V  A  K  W  M  H  S  R  T  L  S  I  P  T  L  S  V  N  S  T  E  I  V  T  S  L  A  L  S  I  L  S  L  V  T  Q  Q  L  C  S  K  T  L  N  *  Q  P  E  S  P  *  A  D  R  V  T  W  L  R  P  K  V  V  K  I  Q  T  K  I  Q  E  L  Q  F  K  I  V  T  L  F  L  V  R  T  L  S  Q  *  K  G  P  *  R  H  I  W  A  D  H  G  R  R  I  H  G  P  C  I  C  S  P  T  L  E  T  I  L  I  Q  Q  V  G  Q  S  G  T  V  I  L  H  *  K  H  C  I  M  V  S  T  *  T  K  E  L  V  L  E  L  V  R  E  *  T  G  L  V  I  I  K  L  *  Q  H  P  R  P  Q  S  S  L  W  V  S  *  F  R  E  Q  H  G  *  N  L  L  V  S  L  T  L  K  D  S  D  K  L  V  *  F  I  D  F  N  *  G  C  F  *  *  C  T  N  E  L  W  L  S  G  V  N  S  I  N  H  H  *  L  I  K  L  V  I  N  L  T  G  I  I  L  I  K  P  I  Y  K  R  L  F  Y  V :   T  K  K  G  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54609" stop="53652"/>
                    <exon start="53526" stop="52835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1647</number_coding_nucleotides>
                  <number_encoded_amino_acids>549</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMTTNYSSQPLLDSPKTKSSSSTKALYVLLSLAAIVGSVGFISIWAINRTSISLTTRVCDTAHDQPSCLAMLSEVAPAGLMDTKTVDLLQMVLHKSSLKIHETIHLASNVNGRINNGQEQVALEDCLELMDLSRDRLMDSMMGLGNLTAQAHFDVHSWLSSILTNHVTCIDGLNGQVRSIMEPMLNDLVARARTSLALMVAIAPQKNIVPTVSDGLPSWVSANDRRLLQLSANAIAANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGIYKENVEIGKTKKNLMLVGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDIQFQNTAGPQKHQAVALRVGADQSVINRCKMDAFQDTLYTHTLRQFYRDCYITGTVDFIFGNAAVVFQNSKLAARKPMSGQSNMVTAQGREDPNQNTGTSIQNCDIIPSSDLEPVKGSVKTYLGRPWKAYSRTVYMQSNIGDHIDPAGWSEWDGDFALKTLYYGEYMNKGAGAGISKRVNWPGYHKALTTSEATKFTVGQLIQGAAWLKSTGVAYTEGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="62111" PGL_stop="64069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62111" e_stop="63083"/>
            <exon e_start="63209" e_stop="64069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.999"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="62111" e_stop="63083" e_length="973"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63084" i_stop="63208" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="63209" e_stop="64069" e_length="861"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62111" stop="62532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62111" stop="62410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62111" stop="62304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62112" stop="62810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62114" stop="62499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62115" stop="62804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62116" stop="62862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62116" stop="62676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62116" stop="62602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62119" stop="62693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62119" stop="62693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62119" stop="62636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62119" stop="62634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62120" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62120" stop="62632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="62635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62126" stop="62966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62126" stop="62686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62126" stop="62598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62127" stop="62739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62128" stop="62634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62128" stop="62423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62131" stop="62390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62133" stop="62634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62143" stop="62689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62158" stop="62464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62169" stop="62732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62319" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62500" stop="63083"/>
              <exon start="63209" stop="63222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62545" stop="63021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62551" stop="63035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62564" stop="63083"/>
              <exon start="63209" stop="63232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62673" stop="63083"/>
              <exon start="63209" stop="63302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62740" stop="63083"/>
              <exon start="63209" stop="63405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62957" stop="63083"/>
              <exon start="63209" stop="63662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62986" stop="63083"/>
              <exon start="63209" stop="63581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63031" stop="63083"/>
              <exon start="63209" stop="63569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63303" stop="64069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63319" stop="64012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63459" stop="64024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63614" stop="64045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63615" stop="64045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63615" stop="64045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTCCATATTTTCACAAAGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCCTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATATAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCACTTGGCAAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG : CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGCAGATCAGTCCGTTATCAACCGTTGCAAAATGGATGCATTCCAGGACACTCTCTATACCCACACTCTCCGTCAATTCTACAGAGATTGTTACATCATTGGCACTGTCGATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACACTGTATTATGGTGAGTACATGAACAAAGGAGCTGGTGCTGGCATTAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTGATTTAAAATATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTTTTTTGTATGCTTGTTCTGTGATGATAATAATAATATGCTGCTTTGTTGTGGTACTGATGACTGAACCAGGCCACAATACGAAGGCATAAATTAAATTTTTTAAACTT</gDNA_template>
            <first_frame> L  T  P  Y  F  H  K  V  M  A  T  S  S  Q  P  L  L  D  S  P  K  T  K  S  S  S  S  T  K  A  L  Y  V  L  L  S  L  A  A  I  V  G  S  V  G  F  I  S  I  W  A  I  N  R  T  S  I  S  L  T  T  R  V  C  D  T  A  H  D  Q  P  S  C  L  A  M  L  S  E  V  A  P  A  G  L  M  D  I  K  T  V  D  L  L  Q  M  V  L  H  K  S  S  L  K  I  H  E  T  I  H  L  A  S  N  V  N  G  R  I  N  N  G  Q  E  Q  V  A  L  E  D  C  L  E  L  M  D  L  S  R  D  R  L  M  D  S  M  V  G  L  G  N  L  T  V  Q  A  H  F  D  V  H  S  W  L  S  S  I  L  T  N  H  V  T  C  I  D  G  L  N  G  Q  V  R  S  I  M  E  P  M  L  N  D  L  V  A  R  A  R  T  S  L  A  L  M  V  A  I  A  P  Q  K  N  I  V  P  T  V  S  D  G  L  P  S  W  V  S  A  N  D  R  R  L  L  Q  L  S  A  N  A  I  A  A  N  V  V  V  A  K  D  G  S  G  K  Y  K  T  V  K  E  A  V  A  S  A  P  D  N  S  K  T  R  Y  V  I  Y  V  K  K  G  T  Y  K  E  N  V  E  I  G  K  K  K  K  N  I  M  L  V  G  D  G  M  D  A  T  I  I  T  G  N  L  N  V  I  D  G  S  T  T  F  K  S  A  T  V   : A  A  V  G  D  G  F  I  A  Q  D  I  Q  F  Q  N  T  A  G  P  Q  K  H  Q  A  V  A  L  R  V  G  A  D  Q  S  V  I  N  R  C  K  M  D  A  F  Q  D  T  L  Y  T  H  T  L  R  Q  F  Y  R  D  C  Y  I  I  G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  N  S  K  L  A  A  R  K  P  M  S  G  Q  K  N  M  V  T  A  Q  G  R  E  D  P  N  Q  N  T  G  T  S  I  Q  N  C  D  I  I  P  S  S  D  L  A  P  V  K  G  S  V  K  T  Y  L  G  R  P  W  K  A  Y  S  R  T  V  Y  M  Q  S  N  I  G  D  H  I  D  P  A  G  W  S  E  W  D  G  D  F  A  L  K  T  L  Y  Y  G  E  Y  M  N  K  G  A  G  A  G  I  S  K  R  V  N  W  P  G  Y  H  K  A  L  T  T  S  E  A  T  K  F  T  V  G  Q  L  I  Q  G  A  A  W  L  K  S  T  G  V  A  Y  T  D  G  L  *  G  T  C  L  I  *  N  M  Y  C  *  *  S  F  S  M  F  W  L  L  F  F  V  C  L  F  C  D  D  N  N  N  M  L  L  C  C  G  T  D  D  *  T  R  P  Q  Y  E  G  I  N  *  I  F  *  T  </first_frame>
            <second_frame>  S  L  H  I  F  T  K  S  W  L  L  P  L  N  H  C  *  I  L  P  K  Q  N  P  P  L  L  L  K  L  S  M  C  F  S  P  *  L  L  L  W  A  Q  L  D  S  F  Q  S  G  P  S  I  V  H  Q  F  P  *  Q  L  V  F  V  I  R  P  M  I  S  H  L  A  *  P  C  C  L  R  L  H  L  L  V  *  W  I  *  K  Q  L  I  C  Y  R  W  F  C  I  N  H  R  *  K  S  T  R  R  S  T  W  Q  A  M  *  M  V  G  S  I  M  A  R  N  K  *  L  *  K  I  V  *  S  *  W  I  C  Q  G  I  D  *  W  T  P  W  W  D  L  G  T  *  R  S  K  P  I  L  M  F  I  H  G  *  V  A  F  S  P  T  M  L  L  A  *  M  A  *  M  A  R  S  G  L  L  W  S  L  C  *  M  I  W  *  Q  E  Q  G  L  P  W  P  *  W  L  Q  L  H  H  K  R  I  L  Y  Q  Q  L  V  M  D  C  P  H  G  L  V  L  M  I  E  D  F  C  N  F  Q  Q  M  Q  *  Q  P  M  L  *  W  L  K  M  A  V  E  N  T  K  P  *  K  K  Q  L  L  L  L  Q  I  I  V  R  L  D  M  L  F  M  S  K  K  E  L  I  K  K  M  L  R  L  G  K  R  R  R  I  *  C  L  W  V  M  A  W  M  Q  L  L  S  L  E  T  *  M  L  L  M  A  Q  Q  L  S  N  L  Q  L  L  :  L  L  L  G  M  D  S  *  P  K  I  Y  N  S  K  T  Q  Q  G  H  K  S  T  K  Q  W  P  F  V  L  E  Q  I  S  P  L  S  T  V  A  K  W  M  H  S  R  T  L  S  I  P  T  L  S  V  N  S  T  E  I  V  T  S  L  A  L  S  I  L  S  L  V  T  Q  Q  L  C  S  K  T  L  N  W  Q  R  E  S  P  *  A  D  R  K  T  W  L  Q  H  K  V  A  K  I  Q  T  K  I  Q  E  L  Q  S  R  I  V  T  L  F  L  A  R  T  L  H  Q  *  K  G  P  *  R  H  I  W  A  D  H  G  K  R  T  R  G  Q  C  T  C  S  P  T  L  E  T  I  L  I  Q  Q  V  G  Q  N  G  T  V  I  L  H  *  K  H  C  I  M  V  S  T  *  T  K  E  L  V  L  A  L  V  R  E  L  T  G  L  V  I  I  K  L  *  Q  H  P  R  P  Q  S  S  L  W  V  S  *  F  K  E  Q  H  G  *  N  L  L  V  S  L  T  L  M  G  C  E  E  L  V  *  F  K  I  C  I  A  S  E  V  L  V  C  F  G  C  F  F  L  Y  A  C  S  V  M  I  I  I  I  C  C  F  V  V  V  L  M  T  E  P  G  H  N  T  K  A  *  I  K  F  F  K  L </second_frame>
            <third_frame>   H  S  I  F  S  Q  S  H  G  Y  F  L  S  T  I  V  R  F  S  Q  N  K  I  L  L  F  Y  *  S  S  L  C  A  S  L  L  S  C  Y  C  G  L  S  W  I  H  F  N  L  G  H  Q  S  Y  I  N  F  L  D  N  S  C  L  *  Y  G  P  *  S  A  I  L  L  S  H  A  V  *  G  C  T  C  W  S  D  G  Y  K  N  S  *  F  A  T  D  G  F  A  *  I  I  V  K  N  P  R  D  D  P  L  G  K  Q  C  E  W  S  D  Q  *  W  P  G  T  S  S  S  R  R  L  F  R  V  D  G  F  V  K  G  *  I  N  G  L  H  G  G  T  W  E  P  N  G  P  S  P  F  *  C  S  F  M  A  K  *  H  S  H  Q  P  C  Y  L  H  R  W  P  K  W  P  G  P  V  Y  Y  G  A  Y  V  E  *  F  G  S  K  S  K  D  F  L  G  L  D  G  C  N  C  T  T  K  E  Y  C  T  N  S  *  *  W  I  A  L  M  G  *  C  *  *  *  K  T  F  A  T  F  S  K  C  N  S  S  Q  C  C  S  G  *  R  W  Q  W  K  I  Q  N  R  K  R  S  S  C  F  C  S  R  *  *  *  D  S  I  C  Y  L  C  Q  K  R  N  L  *  R  K  C  *  D  W  E  K  E  E  E  Y  N  A  C  G  *  W  H  G  C  N  Y  Y  H  W  K  L  E  C  Y  *  W  L  N  N  F  Q  I  C  N  C  C :   C  C  W  G  W  I  H  S  P  R  Y  T  I  P  K  H  S  R  A  T  K  A  P  S  S  G  P  S  C  W  S  R  S  V  R  Y  Q  P  L  Q  N  G  C  I  P  G  H  S  L  Y  P  H  S  P  S  I  L  Q  R  L  L  H  H  W  H  C  R  F  Y  L  W  *  R  S  S  C  V  P  K  L  *  T  G  S  A  K  A  H  E  R  T  E  K  H  G  Y  S  T  R  S  R  R  S  K  P  K  Y  R  N  F  N  P  E  L  *  H  Y  S  *  L  G  P  C  T  S  K  R  V  R  E  D  I  F  G  Q  T  M  E  S  V  L  E  D  S  V  H  A  V  Q  H  W  R  P  Y  *  S  S  R  L  V  R  M  G  R  *  F  C  I  E  N  T  V  L  W  *  V  H  E  Q  R  S  W  C  W  H  *  *  E  S  *  L  A  W  L  S  *  S  F  N  N  I  R  G  H  K  V  H  C  G  S  A  D  S  R  S  S  M  V  K  I  Y  W  C  R  L  H  *  W  V  V  R  N  L  F  D  L  K  Y  V  L  L  V  K  F  *  Y  V  L  V  A  F  F  C  M  L  V  L  *  *  *  *  *  Y  A  A  L  L  W  Y  *  *  L  N  Q  A  T  I  R  R  H  K  L  N  F  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62111" stop="63083"/>
                    <exon start="63209" stop="63900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPYFHKVMATSSQPLLDSPKTKSSSSTKALYVLLSLAAIVGSVGFISIWAINRTSISLTTRVCDTAHDQPSCLAMLSEVAPAGLMDIKTVDLLQMVLHKSSLKIHETIHLASNVNGRINNGQEQVALEDCLELMDLSRDRLMDSMVGLGNLTVQAHFDVHSWLSSILTNHVTCIDGLNGQVRSIMEPMLNDLVARARTSLALMVAIAPQKNIVPTVSDGLPSWVSANDRRLLQLSANAIAANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNIMLVGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDIQFQNTAGPQKHQAVALRVGADQSVINRCKMDAFQDTLYTHTLRQFYRDCYIIGTVDFIFGNAAVVFQNSKLAARKPMSGQKNMVTAQGREDPNQNTGTSIQNCDIIPSSDLAPVKGSVKTYLGRPWKAYSRTVYMQSNIGDHIDPAGWSEWDGDFALKTLYYGEYMNKGAGAGISKRVNWPGYHKALTTSEATKFTVGQLIQGAAWLKSTGVAYTDGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="69476" PGL_stop="72191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70981" e_stop="71972"/>
            <exon e_start="72098" e_stop="72191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.973"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="70981" e_stop="71972" e_length="992"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71973" i_stop="72097" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72098" e_stop="72191" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70981" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70989" stop="71341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70996" stop="71486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="71534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="71486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71001" stop="71582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71001" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71001" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71001" stop="71520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71001" stop="71454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71001" stop="71163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71003" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71004" stop="71503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71008" stop="71574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71008" stop="71521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71008" stop="71361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71010" stop="71577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71011" stop="71578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71011" stop="71525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71011" stop="71486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71011" stop="71437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71011" stop="71419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71016" stop="71508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71022" stop="71487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71022" stop="71483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71023" stop="71524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71025" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71035" stop="71583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71037" stop="71432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71052" stop="71589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71053" stop="71361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71059" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71082" stop="71521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71097" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71215" stop="71556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71389" stop="71972"/>
              <exon start="72098" stop="72111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71434" stop="71910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71440" stop="71924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71453" stop="71972"/>
              <exon start="72098" stop="72121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71562" stop="71972"/>
              <exon start="72098" stop="72191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCATAGCAAACTGAAGTCTCACTCCATATTTTCACAAGGTCATGGCTACTTCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG : CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</gDNA_template>
            <first_frame> I  H  S  K  L  K  S  H  S  I  F  S  Q  G  H  G  Y  F  L  S  T  I  V  R  F  S  Q  N  K  I  F  L  F  Y  *  S  S  L  C  A  S  L  L  S  C  Y  C  G  L  S  W  I  H  F  N  L  G  H  Q  S  Y  I  N  F  L  D  N  S  C  L  *  Y  G  P  *  S  A  I  L  L  S  H  A  V  *  G  C  T  C  W  S  D  G  Y  K  N  S  *  F  A  T  D  G  F  A  *  I  I  V  K  N  P  R  D  D  P  F  G  E  Q  C  E  W  S  D  Q  *  W  P  G  T  S  S  S  R  R  L  F  R  V  D  G  F  V  K  G  *  I  N  G  L  H  G  G  T  W  E  P  N  G  P  S  P  F  *  C  S  F  M  A  K  *  H  S  H  Q  P  C  Y  L  H  R  W  P  K  W  P  G  P  V  Y  Y  G  A  Y  V  E  *  F  G  S  K  S  K  D  F  L  G  L  D  G  C  N  C  T  T  K  E  Y  C  T  N  S  *  *  W  I  A  L  M  G  *  C  *  *  *  K  T  F  A  T  F  S  K  C  N  S  S  Q  C  C  S  G  *  R  W  Q  W  K  I  Q  N  R  K  R  S  S  C  F  C  S  R  *  *  *  D  S  I  C  Y  L  C  Q  K  R  N  L  *  R  K  C  *  D  W  E  K  E  E  E  Y  N  A  C  G  *  W  H  G  C  N  Y  Y  H  W  K  L  E  C  Y  *  W  L  N  N  F  Q  I  C  N  C  C :   C  C  W  G  W  I  H  S  P  R  Y  T  I  P  K  H  S  R  A  T  K  A  P  S  S  G  P  S  C  W  S </first_frame>
            <second_frame>  S  I  A  N  *  S  L  T  P  Y  F  H  K  V  M  A  T  S  S  Q  P  L  L  D  S  P  K  T  K  S  S  S  S  T  K  A  L  Y  V  L  L  S  L  A  A  I  V  G  S  V  G  F  I  S  I  W  A  I  N  R  T  S  I  S  L  T  T  R  V  C  D  T  A  H  D  Q  P  S  C  L  A  M  L  S  E  V  A  P  A  G  L  M  D  T  K  T  V  D  L  L  Q  M  V  L  H  K  S  S  L  K  I  H  E  T  I  H  L  A  S  N  V  N  G  R  I  N  N  G  Q  E  Q  V  A  L  E  D  C  L  E  L  M  D  L  S  R  D  R  L  M  D  S  M  V  G  L  G  N  L  T  V  Q  A  H  F  D  V  H  S  W  L  S  S  I  L  T  N  H  V  T  C  I  D  G  L  N  G  Q  V  R  S  I  M  E  P  M  L  N  D  L  V  A  R  A  R  T  S  L  A  L  M  V  A  I  A  P  Q  K  N  I  V  P  T  V  S  D  G  L  P  S  W  V  S  A  N  D  R  R  L  L  Q  L  S  A  N  A  I  A  A  N  V  V  V  A  K  D  G  S  G  K  Y  K  T  V  K  E  A  V  A  S  A  P  D  N  S  K  T  R  Y  V  I  Y  V  K  K  G  T  Y  K  E  N  V  E  I  G  K  K  K  K  N  I  M  L  V  G  D  G  M  D  A  T  I  I  T  G  N  L  N  V  I  D  G  S  T  T  F  K  S  A  T  V   : A  A  V  G  D  G  F  I  A  Q  D  I  Q  F  Q  N  T  A  G  P  Q  K  H  Q  A  V  A  L  R  V  G   </second_frame>
            <third_frame>   P  *  Q  T  E  V  S  L  H  I  F  T  R  S  W  L  L  P  L  N  H  C  *  I  L  P  K  Q  N  L  P  L  L  L  K  L  S  M  C  F  S  P  *  L  L  L  W  A  Q  L  D  S  F  Q  S  G  P  S  I  V  H  Q  F  P  *  Q  L  V  F  V  I  R  P  M  I  S  H  L  A  *  P  C  C  L  R  L  H  L  L  V  *  W  I  Q  K  Q  L  I  C  Y  R  W  F  C  I  N  H  R  *  K  S  T  R  R  S  I  W  R  A  M  *  M  V  G  S  I  M  A  R  N  K  *  L  *  K  I  V  *  S  *  W  I  C  Q  G  I  D  *  W  T  P  W  W  D  L  G  T  *  R  S  K  P  I  L  M  F  I  H  G  *  V  A  F  S  P  T  M  L  L  A  *  M  A  *  M  A  R  S  G  L  L  W  S  L  C  *  M  I  W  *  Q  E  Q  G  L  P  W  P  *  W  L  Q  L  H  H  K  R  I  L  Y  Q  Q  L  V  M  D  C  P  H  G  L  V  L  M  I  E  D  F  C  N  F  Q  Q  M  Q  *  Q  P  M  L  *  W  L  K  M  A  V  E  N  T  K  P  *  K  K  Q  L  L  L  L  Q  I  I  V  R  L  D  M  L  F  M  S  K  K  E  L  I  K  K  M  L  R  L  G  K  R  R  R  I  *  C  L  W  V  M  A  W  M  Q  L  L  S  L  E  T  *  M  L  L  M  A  Q  Q  L  S  N  L  Q  L  L  :  L  L  L  G  M  D  S  *  P  K  I  Y  N  S  K  T  Q  Q  G  H  K  S  T  K  Q  W  P  F  V  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70997" stop="71972"/>
                    <exon start="72098" stop="72189"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTPYFHKVMATSSQPLLDSPKTKSSSSTKALYVLLSLAAIVGSVGFISIWAINRTSISLTTRVCDTAHDQPSCLAMLSEVAPAGLMDTKTVDLLQMVLHKSSLKIHETIHLASNVNGRINNGQEQVALEDCLELMDLSRDRLMDSMVGLGNLTVQAHFDVHSWLSSILTNHVTCIDGLNGQVRSIMEPMLNDLVARARTSLALMVAIAPQKNIVPTVSDGLPSWVSANDRRLLQLSANAIAANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNIMLVGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDIQFQNTAGPQKHQAVALRVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69476" e_stop="69496"/>
            <exon e_start="71033" e_stop="71972"/>
            <exon e_start="72098" e_stop="72191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.714"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="69476" e_stop="69496" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69497" i_stop="71032" i_length="1536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71033" e_stop="71972" e_length="940"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71973" i_stop="72097" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72098" e_stop="72191" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69476" stop="69496"/>
              <exon start="71033" stop="71517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71035" stop="71583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71037" stop="71432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71052" stop="71589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71053" stop="71361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71059" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71082" stop="71521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71097" stop="71523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71215" stop="71556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71389" stop="71972"/>
              <exon start="72098" stop="72111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71434" stop="71910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71440" stop="71924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71453" stop="71972"/>
              <exon start="72098" stop="72121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71562" stop="71972"/>
              <exon start="72098" stop="72191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACATGAACCAATCATTAT : TCCTCTCAACCATTGTTAGATTCTCCCAAAACAAAATCTTCCTCTTCTACTAAAGCTCTCTATGTGCTTCTCTCCTTAGCTGCTATTGTGGGCTCAGTTGGATTCATTTCAATCTGGGCCATCAATCGTACATCAATTTCCTTGACAACTCGTGTTTGTGATACGGCCCATGATCAGCCATCTTGCTTAGCCATGCTGTCTGAGGTTGCACCTGCTGGTCTGATGGATACAAAAACAGTTGATTTGCTACAGATGGTTTTGCATAAATCATCGTTAAAAATCCACGAGACGATCCATTTGGCGAGCAATGTGAATGGTCGGATCAATAATGGCCAGGAACAAGTAGCTCTAGAAGATTGTTTAGAGTTGATGGATTTGTCAAGGGATAGATTAATGGACTCCATGGTGGGACTTGGGAACCTAACGGTCCAAGCCCATTTTGATGTTCATTCATGGCTAAGTAGCATTCTCACCAACCATGTTACTTGCATAGATGGCCTAAATGGCCAGGTCCGGTCTATTATGGAGCCTATGTTGAATGATTTGGTAGCAAGAGCAAGGACTTCCTTGGCCTTGATGGTTGCAATTGCACCACAAAAGAATATTGTACCAACAGTTAGTGATGGATTGCCCTCATGGGTTAGTGCTAATGATAGAAGACTTTTGCAACTTTCAGCAAATGCAATAGCAGCCAATGTTGTAGTGGCTAAAGATGGCAGTGGAAAATACAAAACCGTAAAAGAAGCAGTTGCTTCTGCTCCAGATAATAGTAAGACTCGATATGTTATTTATGTCAAAAAAGGAACTTATAAAGAAAATGTTGAGATTGGGAAAAAGAAGAAGAATATAATGCTTGTGGGTGATGGCATGGATGCAACTATTATCACTGGAAACTTGAATGTTATTGATGGCTCAACAACTTTCAAATCTGCAACTGTTG : CTGCTGTTGGGGATGGATTCATAGCCCAAGATATACAATTCCAAAACACAGCAGGGCCACAAAAGCACCAAGCAGTGGCCCTTCGTGTTGGAGC</gDNA_template>
            <first_frame> K  T  *  T  N  H  Y  :  S  S  Q  P  L  L  D  S  P  K  T  K  S  S  S  S  T  K  A  L  Y  V  L  L  S  L  A  A  I  V  G  S  V  G  F  I  S  I  W  A  I  N  R  T  S  I  S  L  T  T  R  V  C  D  T  A  H  D  Q  P  S  C  L  A  M  L  S  E  V  A  P  A  G  L  M  D  T  K  T  V  D  L  L  Q  M  V  L  H  K  S  S  L  K  I  H  E  T  I  H  L  A  S  N  V  N  G  R  I  N  N  G  Q  E  Q  V  A  L  E  D  C  L  E  L  M  D  L  S  R  D  R  L  M  D  S  M  V  G  L  G  N  L  T  V  Q  A  H  F  D  V  H  S  W  L  S  S  I  L  T  N  H  V  T  C  I  D  G  L  N  G  Q  V  R  S  I  M  E  P  M  L  N  D  L  V  A  R  A  R  T  S  L  A  L  M  V  A  I  A  P  Q  K  N  I  V  P  T  V  S  D  G  L  P  S  W  V  S  A  N  D  R  R  L  L  Q  L  S  A  N  A  I  A  A  N  V  V  V  A  K  D  G  S  G  K  Y  K  T  V  K  E  A  V  A  S  A  P  D  N  S  K  T  R  Y  V  I  Y  V  K  K  G  T  Y  K  E  N  V  E  I  G  K  K  K  K  N  I  M  L  V  G  D  G  M  D  A  T  I  I  T  G  N  L  N  V  I  D  G  S  T  T  F  K  S  A  T  V   : A  A  V  G  D  G  F  I  A  Q  D  I  Q  F  Q  N  T  A  G  P  Q  K  H  Q  A  V  A  L  R  V  G   </first_frame>
            <second_frame>  K  H  E  P  I  I  I :   P  L  N  H  C  *  I  L  P  K  Q  N  L  P  L  L  L  K  L  S  M  C  F  S  P  *  L  L  L  W  A  Q  L  D  S  F  Q  S  G  P  S  I  V  H  Q  F  P  *  Q  L  V  F  V  I  R  P  M  I  S  H  L  A  *  P  C  C  L  R  L  H  L  L  V  *  W  I  Q  K  Q  L  I  C  Y  R  W  F  C  I  N  H  R  *  K  S  T  R  R  S  I  W  R  A  M  *  M  V  G  S  I  M  A  R  N  K  *  L  *  K  I  V  *  S  *  W  I  C  Q  G  I  D  *  W  T  P  W  W  D  L  G  T  *  R  S  K  P  I  L  M  F  I  H  G  *  V  A  F  S  P  T  M  L  L  A  *  M  A  *  M  A  R  S  G  L  L  W  S  L  C  *  M  I  W  *  Q  E  Q  G  L  P  W  P  *  W  L  Q  L  H  H  K  R  I  L  Y  Q  Q  L  V  M  D  C  P  H  G  L  V  L  M  I  E  D  F  C  N  F  Q  Q  M  Q  *  Q  P  M  L  *  W  L  K  M  A  V  E  N  T  K  P  *  K  K  Q  L  L  L  L  Q  I  I  V  R  L  D  M  L  F  M  S  K  K  E  L  I  K  K  M  L  R  L  G  K  R  R  R  I  *  C  L  W  V  M  A  W  M  Q  L  L  S  L  E  T  *  M  L  L  M  A  Q  Q  L  S  N  L  Q  L  L  :  L  L  L  G  M  D  S  *  P  K  I  Y  N  S  K  T  Q  Q  G  H  K  S  T  K  Q  W  P  F  V  L  E  </second_frame>
            <third_frame>   N  M  N  Q  S  L   : F  L  S  T  I  V  R  F  S  Q  N  K  I  F  L  F  Y  *  S  S  L  C  A  S  L  L  S  C  Y  C  G  L  S  W  I  H  F  N  L  G  H  Q  S  Y  I  N  F  L  D  N  S  C  L  *  Y  G  P  *  S  A  I  L  L  S  H  A  V  *  G  C  T  C  W  S  D  G  Y  K  N  S  *  F  A  T  D  G  F  A  *  I  I  V  K  N  P  R  D  D  P  F  G  E  Q  C  E  W  S  D  Q  *  W  P  G  T  S  S  S  R  R  L  F  R  V  D  G  F  V  K  G  *  I  N  G  L  H  G  G  T  W  E  P  N  G  P  S  P  F  *  C  S  F  M  A  K  *  H  S  H  Q  P  C  Y  L  H  R  W  P  K  W  P  G  P  V  Y  Y  G  A  Y  V  E  *  F  G  S  K  S  K  D  F  L  G  L  D  G  C  N  C  T  T  K  E  Y  C  T  N  S  *  *  W  I  A  L  M  G  *  C  *  *  *  K  T  F  A  T  F  S  K  C  N  S  S  Q  C  C  S  G  *  R  W  Q  W  K  I  Q  N  R  K  R  S  S  C  F  C  S  R  *  *  *  D  S  I  C  Y  L  C  Q  K  R  N  L  *  R  K  C  *  D  W  E  K  E  E  E  Y  N  A  C  G  *  W  H  G  C  N  Y  Y  H  W  K  L  E  C  Y  *  W  L  N  N  F  Q  I  C  N  C  C :   C  C  W  G  W  I  H  S  P  R  Y  T  I  P  K  H  S  R  A  T  K  A  P  S  S  G  P  S  C  W  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69485" stop="69496"/>
                    <exon start="71033" stop="71972"/>
                    <exon start="72098" stop="72189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNHYSSQPLLDSPKTKSSSSTKALYVLLSLAAIVGSVGFISIWAINRTSISLTTRVCDTAHDQPSCLAMLSEVAPAGLMDTKTVDLLQMVLHKSSLKIHETIHLASNVNGRINNGQEQVALEDCLELMDLSRDRLMDSMVGLGNLTVQAHFDVHSWLSSILTNHVTCIDGLNGQVRSIMEPMLNDLVARARTSLALMVAIAPQKNIVPTVSDGLPSWVSANDRRLLQLSANAIAANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNIMLVGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDIQFQNTAGPQKHQAVALRVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="72298" PGL_stop="72959"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72298" e_stop="72959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="72298" e_stop="72959" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72298" stop="72902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72470" stop="72955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72542" stop="72956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72614" stop="72953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72665" stop="72959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTATCTTTGGTAACGCAGCAGTTGTGTTCCAAAACTCTAAACTGGCAGCGCGAAAGCCCATGAGCGGACAGAAAAACATGGTTACAGCACAAGGTCGCGAAGATCCAAACCAAAATACAGGAACTTCAATCCAGAATTGTGACATTATTCCTAGCTCGGACCTTGCACCAGTAAAAGGGTCCGTGAAGACATATTTGGGCAGACCATGGAAAGCGTACTCGAGGACAGTGTACATGCAGTCCAACATTGGAGACCATATTGATCCAGCAGGTTGGTCAGAATGGGACGGTGATTTTGCATTGAAAACATGTATTATGGTGAGTACATGAACAAGGAGCTGGTGCTGGATAGTAAGAGAGTTAACTGGCCTGGTTATCATAAAGCTTTAACAACATCCGAGGCCACAAAGTTCACTGTGGGTCAGCTGATTCAAGGAGCAGCATGGTTAAAATCTACTGGTGTCGCTTACACTGATGGGTTGTGAGGAACTTGTTTAATTCAAATATGTGTGCCATGTATTGCTAGTGAAGTTTTAGTATGTTTTGGTTGCTTTCTGTTTGCTTGTTCTGTGATGATAATAATAATATGCTGCTTAGTTGTGGCTCTGATGACTGAACCATGCCACAATAAGAAATTATAAATTAAATTATTTAGAATAG</gDNA_template>
            <first_frame> I  L  S  L  V  T  Q  Q  L  C  S  K  T  L  N  W  Q  R  E  S  P  *  A  D  R  K  T  W  L  Q  H  K  V  A  K  I  Q  T  K  I  Q  E  L  Q  S  R  I  V  T  L  F  L  A  R  T  L  H  Q  *  K  G  P  *  R  H  I  W  A  D  H  G  K  R  T  R  G  Q  C  T  C  S  P  T  L  E  T  I  L  I  Q  Q  V  G  Q  N  G  T  V  I  L  H  *  K  H  V  L  W  *  V  H  E  Q  G  A  G  A  G  *  *  E  S  *  L  A  W  L  S  *  S  F  N  N  I  R  G  H  K  V  H  C  G  S  A  D  S  R  S  S  M  V  K  I  Y  W  C  R  L  H  *  W  V  V  R  N  L  F  N  S  N  M  C  A  M  Y  C  *  *  S  F  S  M  F  W  L  L  S  V  C  L  F  C  D  D  N  N  N  M  L  L  S  C  G  S  D  D  *  T  M  P  Q  *  E  I  I  N  *  I  I  *  N   </first_frame>
            <second_frame>  F  Y  L  W  *  R  S  S  C  V  P  K  L  *  T  G  S  A  K  A  H  E  R  T  E  K  H  G  Y  S  T  R  S  R  R  S  K  P  K  Y  R  N  F  N  P  E  L  *  H  Y  S  *  L  G  P  C  T  S  K  R  V  R  E  D  I  F  G  Q  T  M  E  S  V  L  E  D  S  V  H  A  V  Q  H  W  R  P  Y  *  S  S  R  L  V  R  M  G  R  *  F  C  I  E  N  M  Y  Y  G  E  Y  M  N  K  E  L  V  L  D  S  K  R  V  N  W  P  G  Y  H  K  A  L  T  T  S  E  A  T  K  F  T  V  G  Q  L  I  Q  G  A  A  W  L  K  S  T  G  V  A  Y  T  D  G  L  *  G  T  C  L  I  Q  I  C  V  P  C  I  A  S  E  V  L  V  C  F  G  C  F  L  F  A  C  S  V  M  I  I  I  I  C  C  L  V  V  A  L  M  T  E  P  C  H  N  K  K  L  *  I  K  L  F  R  I  </second_frame>
            <third_frame>   F  I  F  G  N  A  A  V  V  F  Q  N  S  K  L  A  A  R  K  P  M  S  G  Q  K  N  M  V  T  A  Q  G  R  E  D  P  N  Q  N  T  G  T  S  I  Q  N  C  D  I  I  P  S  S  D  L  A  P  V  K  G  S  V  K  T  Y  L  G  R  P  W  K  A  Y  S  R  T  V  Y  M  Q  S  N  I  G  D  H  I  D  P  A  G  W  S  E  W  D  G  D  F  A  L  K  T  C  I  M  V  S  T  *  T  R  S  W  C  W  I  V  R  E  L  T  G  L  V  I  I  K  L  *  Q  H  P  R  P  Q  S  S  L  W  V  S  *  F  K  E  Q  H  G  *  N  L  L  V  S  L  T  L  M  G  C  E  E  L  V  *  F  K  Y  V  C  H  V  L  L  V  K  F  *  Y  V  L  V  A  F  C  L  L  V  L  *  *  *  *  *  Y  A  A  *  L  W  L  *  *  L  N  H  A  T  I  R  N  Y  K  L  N  Y  L  E  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72300" stop="72629"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIFGNAAVVFQNSKLAARKPMSGQKNMVTAQGREDPNQNTGTSIQNCDIIPSSDLAPVKGSVKTYLGRPWKAYSRTVYMQSNIGDHIDPAGWSEWDGDFALKTCIMVST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76436" PGL_stop="76031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76436" e_stop="76031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="76436" e_stop="76031" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76436" stop="76031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGATCCAGGGAAGTATCATATCTTTTACCAAGGATCAGGGATGCAGTTAGGAGCTGAAGGTTTTGCTGTTGGATTCTTGTACACGATTGTTGGATTGTTGTTGGCACTAATGACTCATGTTTTGCTTCATCTGAAGAACAGGGGAACACAGAGTTTGCTCATGGCTTTGGGGCTTTTCGTTTCATTTTGGGCGGTAAAGAGGGTGATTTACTTAAATAATTGGAAGACTGGCTATGGTGTTCATGCTTATTGGCCTTCAGGTTGGATGTGATAGCAATGTAGTTTGTCTGTTATACTACAATTGAGTGATCCTTATTCATCAAAAGTAGTTGAATGAAAAGTTTCAGATGTTACATTTTAGATTTATCGAGCTTTTATCTTGTAGTGAAGCATTTGTTTGCCAG</gDNA_template>
            <first_frame> N  D  P  G  K  Y  H  I  F  Y  Q  G  S  G  M  Q  L  G  A  E  G  F  A  V  G  F  L  Y  T  I  V  G  L  L  L  A  L  M  T  H  V  L  L  H  L  K  N  R  G  T  Q  S  L  L  M  A  L  G  L  F  V  S  F  W  A  V  K  R  V  I  Y  L  N  N  W  K  T  G  Y  G  V  H  A  Y  W  P  S  G  W  M  *  *  Q  C  S  L  S  V  I  L  Q  L  S  D  P  Y  S  S  K  V  V  E  *  K  V  S  D  V  T  F  *  I  Y  R  A  F  I  L  *  *  S  I  C  L  P  </first_frame>
            <second_frame>  M  I  Q  G  S  I  I  S  F  T  K  D  Q  G  C  S  *  E  L  K  V  L  L  L  D  S  C  T  R  L  L  D  C  C  W  H  *  *  L  M  F  C  F  I  *  R  T  G  E  H  R  V  C  S  W  L  W  G  F  S  F  H  F  G  R  *  R  G  *  F  T  *  I  I  G  R  L  A  M  V  F  M  L  I  G  L  Q  V  G  C  D  S  N  V  V  C  L  L  Y  Y  N  *  V  I  L  I  H  Q  K  *  L  N  E  K  F  Q  M  L  H  F  R  F  I  E  L  L  S  C  S  E  A  F  V  C  Q </second_frame>
            <third_frame>   *  S  R  E  V  S  Y  L  L  P  R  I  R  D  A  V  R  S  *  R  F  C  C  W  I  L  V  H  D  C  W  I  V  V  G  T  N  D  S  C  F  A  S  S  E  E  Q  G  N  T  E  F  A  H  G  F  G  A  F  R  F  I  L  G  G  K  E  G  D  L  L  K  *  L  E  D  W  L  W  C  S  C  L  L  A  F  R  L  D  V  I  A  M  *  F  V  C  Y  T  T  I  E  *  S  L  F  I  K  S  S  *  M  K  S  F  R  C  Y  I  L  D  L  S  S  F  Y  L  V  V  K  H  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76436" stop="76164"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDPGKYHIFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHVLLHLKNRGTQSLLMALGLFVSFWAVKRVIYLNNWKTGYGVHAYWPSGWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="89094" PGL_stop="90958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89094" e_stop="89292"/>
            <exon e_start="89384" e_stop="89484"/>
            <exon e_start="89558" e_stop="89760"/>
            <exon e_start="90327" e_stop="90958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89094" e_stop="89292" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89293" i_stop="89383" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89384" e_stop="89484" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89485" i_stop="89557" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89558" e_stop="89760" e_length="203"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="89761" i_stop="90326" i_length="566"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="90327" e_stop="90958" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89094" stop="89292"/>
              <exon start="89384" stop="89484"/>
              <exon start="89558" stop="89760"/>
              <exon start="90327" stop="90526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89095" stop="89292"/>
              <exon start="89384" stop="89484"/>
              <exon start="89558" stop="89746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="89760"/>
              <exon start="90327" stop="90958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCACCATGGAGAGCAATGCTTCTTCAATGGCTCGTGTTCTTTTGATTTTATCAGTAATTTTTACCCTTTTTTCATCATCAAATGGTGTAGTTGGAGGTGCATTTGAAGAAAATTTCAGTAAAAGTTGTCCTGGTACACATTTCAAGACTTCTAAAGATGGACAGATCTGGTATCTTACCTTAGACCAAGTATCAG : ATTGTGGGTTCATAACAAAACAGAGCTATAGATTTGGTTGGTATAGCACAAAGTTGAAATTAGTAGGAGGTGACTCTGCTGGTGTTGTGACAGCATTTTAT : ATGTGCTCAGAAGTAGAGGCAGGGCCATTGAGAGATGAGATAGATTTTGAGTTTTTGGGAAACAGAACAGGGCAGCCTTATCTTATTCAGACAAATGTGTATAACAATGGGAGTGGTGGACGTGAAATGAGGCATCAACTTTGGTTTGATCCTACTCTCGACTTTCATACTTATTCCATTCTTTGGAACTCTCATCAAATTGT : ATTTTTTGTGGATAAAGTACCAATAAGGGTATACAAGAACGCGAATCACACAAACAATTTCTTTCCAGCCCAGAGGCCGATGTACGTGTTTTCAAGCATATGGAATGCAGATAATTGGGCTACTAGAGGAGGCTTGGACAAGATAAACTGGGAAAATGCACCATTTGTAGCATCTTATAAGGATTTTACCATAGACGCTTGTCCATGGAAAAACCCTTACCCTGCTTGTGCTTCATCCACCACACAGCACTGGTGGGATCAGAATAATACTTGGCACCTATCAAGTAAAGAGAAGATTGATTATGCTTGGGTTCAGAGGAACTTTGTGGTTTATAATTATTGCCAGGATACTGTGAGGAACAAGTACAAGCCTCAAGAGTGTTGGTTAAATCCATTGGACTAATATTAAACATTAGAAAAAATTCATTGGTGAGAGAAAAGTCATAGTAGTATTTTGATCTTGATTTTGAGTGTATATATTGGACGATTGAGCCATTGTAGATCCATCGATTGGTATATTGTAAACCATCGGCATTACTACTATTGGAAAGTGAAAAGAGTGGTTCACTATATTTACAAATGTTATAACGATATTCTTAATGTAATCAGTATGTTTTATTCAAGGAAGTTAA</gDNA_template>
            <first_frame> K  T  T  M  E  S  N  A  S  S  M  A  R  V  L  L  I  L  S  V  I  F  T  L  F  S  S  S  N  G  V  V  G  G  A  F  E  E  N  F  S  K  S  C  P  G  T  H  F  K  T  S  K  D  G  Q  I  W  Y  L  T  L  D  Q  V  S   : D  C  G  F  I  T  K  Q  S  Y  R  F  G  W  Y  S  T  K  L  K  L  V  G  G  D  S  A  G  V  V  T  A  F  Y  :  M  C  S  E  V  E  A  G  P  L  R  D  E  I  D  F  E  F  L  G  N  R  T  G  Q  P  Y  L  I  Q  T  N  V  Y  N  N  G  S  G  G  R  E  M  R  H  Q  L  W  F  D  P  T  L  D  F  H  T  Y  S  I  L  W  N  S  H  Q  I  V :   F  F  V  D  K  V  P  I  R  V  Y  K  N  A  N  H  T  N  N  F  F  P  A  Q  R  P  M  Y  V  F  S  S  I  W  N  A  D  N  W  A  T  R  G  G  L  D  K  I  N  W  E  N  A  P  F  V  A  S  Y  K  D  F  T  I  D  A  C  P  W  K  N  P  Y  P  A  C  A  S  S  T  T  Q  H  W  W  D  Q  N  N  T  W  H  L  S  S  K  E  K  I  D  Y  A  W  V  Q  R  N  F  V  V  Y  N  Y  C  Q  D  T  V  R  N  K  Y  K  P  Q  E  C  W  L  N  P  L  D  *  Y  *  T  L  E  K  I  H  W  *  E  K  S  H  S  S  I  L  I  L  I  L  S  V  Y  I  G  R  L  S  H  C  R  S  I  D  W  Y  I  V  N  H  R  H  Y  Y  Y  W  K  V  K  R  V  V  H  Y  I  Y  K  C  Y  N  D  I  L  N  V  I  S  M  F  Y  S  R  K  L  </first_frame>
            <second_frame>  K  P  P  W  R  A  M  L  L  Q  W  L  V  F  F  *  F  Y  Q  *  F  L  P  F  F  H  H  Q  M  V  *  L  E  V  H  L  K  K  I  S  V  K  V  V  L  V  H  I  S  R  L  L  K  M  D  R  S  G  I  L  P  *  T  K  Y  Q  :  I  V  G  S  *  Q  N  R  A  I  D  L  V  G  I  A  Q  S  *  N  *  *  E  V  T  L  L  V  L  *  Q  H  F  I :   C  A  Q  K  *  R  Q  G  H  *  E  M  R  *  I  L  S  F  W  E  T  E  Q  G  S  L  I  L  F  R  Q  M  C  I  T  M  G  V  V  D  V  K  *  G  I  N  F  G  L  I  L  L  S  T  F  I  L  I  P  F  F  G  T  L  I  K  L   : Y  F  L  W  I  K  Y  Q  *  G  Y  T  R  T  R  I  T  Q  T  I  S  F  Q  P  R  G  R  C  T  C  F  Q  A  Y  G  M  Q  I  I  G  L  L  E  E  A  W  T  R  *  T  G  K  M  H  H  L  *  H  L  I  R  I  L  P  *  T  L  V  H  G  K  T  L  T  L  L  V  L  H  P  P  H  S  T  G  G  I  R  I  I  L  G  T  Y  Q  V  K  R  R  L  I  M  L  G  F  R  G  T  L  W  F  I  I  I  A  R  I  L  *  G  T  S  T  S  L  K  S  V  G  *  I  H  W  T  N  I  K  H  *  K  K  F  I  G  E  R  K  V  I  V  V  F  *  S  *  F  *  V  Y  I  L  D  D  *  A  I  V  D  P  S  I  G  I  L  *  T  I  G  I  T  T  I  G  K  *  K  E  W  F  T  I  F  T  N  V  I  T  I  F  L  M  *  S  V  C  F  I  Q  G  S  * </second_frame>
            <third_frame>   N  H  H  G  E  Q  C  F  F  N  G  S  C  S  F  D  F  I  S  N  F  Y  P  F  F  I  I  K  W  C  S  W  R  C  I  *  R  K  F  Q  *  K  L  S  W  Y  T  F  Q  D  F  *  R  W  T  D  L  V  S  Y  L  R  P  S  I  R :   L  W  V  H  N  K  T  E  L  *  I  W  L  V  *  H  K  V  E  I  S  R  R  *  L  C  W  C  C  D  S  I  L   : Y  V  L  R  S  R  G  R  A  I  E  R  *  D  R  F  *  V  F  G  K  Q  N  R  A  A  L  S  Y  S  D  K  C  V  *  Q  W  E  W  W  T  *  N  E  A  S  T  L  V  *  S  Y  S  R  L  S  Y  L  F  H  S  L  E  L  S  S  N  C  :  I  F  C  G  *  S  T  N  K  G  I  Q  E  R  E  S  H  K  Q  F  L  S  S  P  E  A  D  V  R  V  F  K  H  M  E  C  R  *  L  G  Y  *  R  R  L  G  Q  D  K  L  G  K  C  T  I  C  S  I  L  *  G  F  Y  H  R  R  L  S  M  E  K  P  L  P  C  L  C  F  I  H  H  T  A  L  V  G  S  E  *  Y  L  A  P  I  K  *  R  E  D  *  L  C  L  G  S  E  E  L  C  G  L  *  L  L  P  G  Y  C  E  E  Q  V  Q  A  S  R  V  L  V  K  S  I  G  L  I  L  N  I  R  K  N  S  L  V  R  E  K  S  *  *  Y  F  D  L  D  F  E  C  I  Y  W  T  I  E  P  L  *  I  H  R  L  V  Y  C  K  P  S  A  L  L  L  L  E  S  E  K  S  G  S  L  Y  L  Q  M  L  *  R  Y  S  *  C  N  Q  Y  V  L  F  K  E  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89094" stop="89292"/>
                    <exon start="89384" stop="89484"/>
                    <exon start="89558" stop="89760"/>
                    <exon start="90327" stop="90729"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTTMESNASSMARVLLILSVIFTLFSSSNGVVGGAFEENFSKSCPGTHFKTSKDGQIWYLTLDQVSDCGFITKQSYRFGWYSTKLKLVGGDSAGVVTAFYMCSEVEAGPLRDEIDFEFLGNRTGQPYLIQTNVYNNGSGGREMRHQLWFDPTLDFHTYSILWNSHQIVFFVDKVPIRVYKNANHTNNFFPAQRPMYVFSSIWNADNWATRGGLDKINWENAPFVASYKDFTIDACPWKNPYPACASSTTQHWWDQNNTWHLSSKEKIDYAWVQRNFVVYNYCQDTVRNKYKPQECWLNPLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90760" stop="90957"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKSHSSILILILSVYIGRLSHCRSIDWYIVNHRHYYYWKVKRVVHYIYKCYNDILNVISMFYSRKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="90861" PGL_stop="90476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90861" e_stop="90476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="90861" e_stop="90476" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90861" stop="90476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCCGATGGTTTACAATATACCAATCGATGGATCTACAATGGCTCAATCGTCCAATATATACACTCAAAATCAAGATCAAAATACTACTATGACTTTTCTCTCACCAATGAATTTTTTCTAATGTTTAATATTAGTCCAATGGATTTAACCAACACTCTTGAGGCTTGTACTTGTTCCTCACAGTATCCTGGCAATAATTATAAACCACAAAGTTCCTCTGAACCCAAGCATAATCAATCTTCTCTTTACTTGATAGGTGCCAAGTATTATTCTGATCCCACCAGTGCTGTGTGGTGGATGAAGCACAAGCAGGGTAAGGGTTTTTCCATGGACAAGCGTCTATGGTAAAATCCTTATAAGATGCTACAAATGGTGCATTTTCCC</gDNA_template>
            <first_frame> M  P  M  V  Y  N  I  P  I  D  G  S  T  M  A  Q  S  S  N  I  Y  T  Q  N  Q  D  Q  N  T  T  M  T  F  L  S  P  M  N  F  F  *  C  L  I  L  V  Q  W  I  *  P  T  L  L  R  L  V  L  V  P  H  S  I  L  A  I  I  I  N  H  K  V  P  L  N  P  S  I  I  N  L  L  F  T  *  *  V  P  S  I  I  L  I  P  P  V  L  C  G  G  *  S  T  S  R  V  R  V  F  P  W  T  S  V  Y  G  K  I  L  I  R  C  Y  K  W  C  I  F   </first_frame>
            <second_frame>  C  R  W  F  T  I  Y  Q  S  M  D  L  Q  W  L  N  R  P  I  Y  T  L  K  I  K  I  K  I  L  L  *  L  F  S  H  Q  *  I  F  S  N  V  *  Y  *  S  N  G  F  N  Q  H  S  *  G  L  Y  L  F  L  T  V  S  W  Q  *  L  *  T  T  K  F  L  *  T  Q  A  *  S  I  F  S  L  L  D  R  C  Q  V  L  F  *  S  H  Q  C  C  V  V  D  E  A  Q  A  G  *  G  F  F  H  G  Q  A  S  M  V  K  S  L  *  D  A  T  N  G  A  F  S  </second_frame>
            <third_frame>   A  D  G  L  Q  Y  T  N  R  W  I  Y  N  G  S  I  V  Q  Y  I  H  S  K  S  R  S  K  Y  Y  Y  D  F  S  L  T  N  E  F  F  L  M  F  N  I  S  P  M  D  L  T  N  T  L  E  A  C  T  C  S  S  Q  Y  P  G  N  N  Y  K  P  Q  S  S  S  E  P  K  H  N  Q  S  S  L  Y  L  I  G  A  K  Y  Y  S  D  P  T  S  A  V  W  W  M  K  H  K  Q  G  K  G  F  S  M  D  K  R  L  W  *  N  P  Y  K  M  L  Q  M  V  H  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90859" stop="90512"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADGLQYTNRWIYNGSIVQYIHSKSRSKYYYDFSLTNEFFLMFNISPMDLTNTLEACTCSSQYPGNNYKPQSSSEPKHNQSSLYLIGAKYYSDPTSAVWWMKHKQGKGFSMDKRLW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="94558" PGL_stop="92581"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94558" e_stop="94477"/>
            <exon e_start="93191" e_stop="92581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94558" e_stop="94477" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="94476" i_stop="93192" i_length="1285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93191" e_stop="92581" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94558" stop="94477"/>
              <exon start="93191" stop="92624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94558" stop="94477"/>
              <exon start="93191" stop="92624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94557" stop="94477"/>
              <exon start="93191" stop="92581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94557" stop="94477"/>
              <exon start="93191" stop="92880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCCCAAAACCCTAAGCCGTCGACCGTTGCAGCGCCCCTCTCTCAGCCATCGGCACCTCCATCGTCTGAAATTCGTTCAG : TGTAGGAGGTAGAAATCCTGTGCCTGCCTGGTAATGCAAAGACATTTCACCATGTCTGCTGATCCTGCTTTGGTGGAGGAGGATGCTTCTTCAGGCTCAGGAGAGGACATAAACATGTTAGATGGGCACAATAAGCATCAAACTGTAACGCCAAATTCAGGTCGTCGCAAGAGAAGTCGCAAGGCAACTGGTGATGCTATAGTTGATGCAATGCTGGAAATTGCAGCTGCTTCGAAGATGAGGGCAGCTGCCATTATGAGGAATGAGGAACGCTTTGCTATAAGCAAATGCATAAAAGTATTAGATGAAATGCAAGGTGTAGATCAAAGTATCTACTTTTTTGCATTGGATTTATTCGAGAATTCAAATGCCAGAGAAACTTTTATCTCTCTGAAGAATGAGAGGCGCTTGATATGGTTGCAGTGTAAGTACAATTCGGCAAATGCAGCTAGCTAATGGAATCCTCTATTAGTTCTCGACTTTCCTATAGTGGGTTTTGCTAGGACATTTTGACTGTATACTACTATTACTTCCCAACATCTATTTACTACTGGATGTGGCTGGATGCTTAGTTCTAATTCGTAATTGTTGCAAACAAAAAAAACTACTCT</gDNA_template>
            <first_frame> I  S  Q  N  P  K  P  S  T  V  A  A  P  L  S  Q  P  S  A  P  P  S  S  E  I  R  S   : V  *  E  V  E  I  L  C  L  P  G  N  A  K  T  F  H  H  V  C  *  S  C  F  G  G  G  G  C  F  F  R  L  R  R  G  H  K  H  V  R  W  A  Q  *  A  S  N  C  N  A  K  F  R  S  S  Q  E  K  S  Q  G  N  W  *  C  Y  S  *  C  N  A  G  N  C  S  C  F  E  D  E  G  S  C  H  Y  E  E  *  G  T  L  C  Y  K  Q  M  H  K  S  I  R  *  N  A  R  C  R  S  K  Y  L  L  F  C  I  G  F  I  R  E  F  K  C  Q  R  N  F  Y  L  S  E  E  *  E  A  L  D  M  V  A  V  *  V  Q  F  G  K  C  S  *  L  M  E  S  S  I  S  S  R  L  S  Y  S  G  F  C  *  D  I  L  T  V  Y  Y  Y  Y  F  P  T  S  I  Y  Y  W  M  W  L  D  A  *  F  *  F  V  I  V  A  N  K  K  N  Y  S </first_frame>
            <second_frame>  S  P  K  T  L  S  R  R  P  L  Q  R  P  S  L  S  H  R  H  L  H  R  L  K  F  V  Q  :  C  R  R  *  K  S  C  A  C  L  V  M  Q  R  H  F  T  M  S  A  D  P  A  L  V  E  E  D  A  S  S  G  S  G  E  D  I  N  M  L  D  G  H  N  K  H  Q  T  V  T  P  N  S  G  R  R  K  R  S  R  K  A  T  G  D  A  I  V  D  A  M  L  E  I  A  A  A  S  K  M  R  A  A  A  I  M  R  N  E  E  R  F  A  I  S  K  C  I  K  V  L  D  E  M  Q  G  V  D  Q  S  I  Y  F  F  A  L  D  L  F  E  N  S  N  A  R  E  T  F  I  S  L  K  N  E  R  R  L  I  W  L  Q  C  K  Y  N  S  A  N  A  A  S  *  W  N  P  L  L  V  L  D  F  P  I  V  G  F  A  R  T  F  *  L  Y  T  T  I  T  S  Q  H  L  F  T  T  G  C  G  W  M  L  S  S  N  S  *  L  L  Q  T  K  K  T  T   </second_frame>
            <third_frame>   L  P  K  P  *  A  V  D  R  C  S  A  P  L  S  A  I  G  T  S  I  V  *  N  S  F  S :   V  G  G  R  N  P  V  P  A  W  *  C  K  D  I  S  P  C  L  L  I  L  L  W  W  R  R  M  L  L  Q  A  Q  E  R  T  *  T  C  *  M  G  T  I  S  I  K  L  *  R  Q  I  Q  V  V  A  R  E  V  A  R  Q  L  V  M  L  *  L  M  Q  C  W  K  L  Q  L  L  R  R  *  G  Q  L  P  L  *  G  M  R  N  A  L  L  *  A  N  A  *  K  Y  *  M  K  C  K  V  *  I  K  V  S  T  F  L  H  W  I  Y  S  R  I  Q  M  P  E  K  L  L  S  L  *  R  M  R  G  A  *  Y  G  C  S  V  S  T  I  R  Q  M  Q  L  A  N  G  I  L  Y  *  F  S  T  F  L  *  W  V  L  L  G  H  F  D  C  I  L  L  L  L  P  N  I  Y  L  L  L  D  V  A  G  C  L  V  L  I  R  N  C  C  K  Q  K  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0212C17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93179" stop="92736"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSCACLVMQRHFTMSADPALVEEDASSGSGEDINMLDGHNKHQTVTPNSGRRKRSRKATGDAIVDAMLEIAAASKMRAAAIMRNEERFAISKCIKVLDEMQGVDQSIYFFALDLFENSNARETFISLKNERRLIWLQCKYNSANAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="97306" PGL_stop="100659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97306" e_stop="97328"/>
            <exon e_start="97792" e_stop="97833"/>
            <exon e_start="99514" e_stop="99678"/>
            <exon e_start="100383" e_stop="100659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.800" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.435" e_score="0.994"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97306" e_stop="97328" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.894">
            <gDNA_intron_boundary i_start="97329" i_stop="97791" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97792" e_stop="97833" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.800" acc_prob="0.918">
            <gDNA_intron_boundary i_start="97834" i_stop="99513" i_length="1680"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="99514" e_stop="99678" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.435">
            <gDNA_intron_boundary i_start="99679" i_stop="100382" i_length="704"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="100383" e_stop="100659" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97306" stop="97328"/>
              <exon start="97792" stop="97833"/>
              <exon start="99514" stop="99678"/>
              <exon start="100383" stop="100659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97306" stop="97328"/>
              <exon start="97792" stop="97833"/>
              <exon start="99514" stop="99678"/>
              <exon start="100383" stop="100659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97307" stop="97328"/>
              <exon start="97792" stop="97833"/>
              <exon start="99514" stop="99678"/>
              <exon start="100383" stop="100659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTTTCTCTATCATTTGTTTTG : ATTTTCTACTATGTATTCATTTCTACGTGAATGATCCAAAAG : CTGCAGATTTGAATAAGTTTGTCCTAGGAAAGAGGCAAAAGTTATACTGAAAGAAGTTGAAGGCAAAAGCTTCTAATTTTTGTATAAAGCAGACTGCTCGGAGGGAATGGCTATATTGATTCTTTTCATCATGACCACGAGGATCACGTAGAACAACCTGTTTTG : ATCTCAACTCTTCAATGGTGAATCTATGTGTTGCTAAGTTTCTTCTCTTTGTGTAGAAACTAAATCTCTCTGCCTCAAGATTTTTGTTTGTTTAGGATGCCTTATCGATGTTTTCTCAAGATTTAAGGTAAATTTACATGTTTTTCAATTTGCCTAATTGACCTATTTTCTCTTCAAGGTCAAATCTCTGATTTTAATATTCAAAGGGCTATTTCGGGTCCTTGTACTTTTTGTACTATGCTTCAATACAAAAATACAAGAGTAGACAAATTATGGT</gDNA_template>
            <first_frame> *  F  L  Y  H  L  F  * :   F  S  T  M  Y  S  F  L  R  E  *  S  K  S :   C  R  F  E  *  V  C  P  R  K  E  A  K  V  I  L  K  E  V  E  G  K  S  F  *  F  L  Y  K  A  D  C  S  E  G  M  A  I  L  I  L  F  I  M  T  T  R  I  T  *  N  N  L  F  * :   S  Q  L  F  N  G  E  S  M  C  C  *  V  S  S  L  C  V  E  T  K  S  L  C  L  K  I  F  V  C  L  G  C  L  I  D  V  F  S  R  F  K  V  N  L  H  V  F  Q  F  A  *  L  T  Y  F  L  F  K  V  K  S  L  I  L  I  F  K  G  L  F  R  V  L  V  L  F  V  L  C  F  N  T  K  I  Q  E  *  T  N  Y  G </first_frame>
            <second_frame>  S  F  S  I  I  C  F   : D  F  L  L  C  I  H  F  Y  V  N  D  P  K   : A  A  D  L  N  K  F  V  L  G  K  R  Q  K  L  Y  *  K  K  L  K  A  K  A  S  N  F  C  I  K  Q  T  A  R  R  E  W  L  Y  *  F  F  S  S  *  P  R  G  S  R  R  T  T  C  F   : D  L  N  S  S  M  V  N  L  C  V  A  K  F  L  L  F  V  *  K  L  N  L  S  A  S  R  F  L  F  V  *  D  A  L  S  M  F  S  Q  D  L  R  *  I  Y  M  F  F  N  L  P  N  *  P  I  F  S  S  R  S  N  L  *  F  *  Y  S  K  G  Y  F  G  S  L  Y  F  L  Y  Y  A  S  I  Q  K  Y  K  S  R  Q  I  M   </second_frame>
            <third_frame>   V  S  L  S  F  V  L  :  I  F  Y  Y  V  F  I  S  T  *  M  I  Q  K  :  L  Q  I  *  I  S  L  S  *  E  R  G  K  S  Y  T  E  R  S  *  R  Q  K  L  L  I  F  V  *  S  R  L  L  G  G  N  G  Y  I  D  S  F  H  H  D  H  E  D  H  V  E  Q  P  V  L  :  I  S  T  L  Q  W  *  I  Y  V  L  L  S  F  F  S  L  C  R  N  *  I  S  L  P  Q  D  F  C  L  F  R  M  P  Y  R  C  F  L  K  I  *  G  K  F  T  C  F  S  I  C  L  I  D  L  F  S  L  Q  G  Q  I  S  D  F  N  I  Q  R  A  I  S  G  P  C  T  F  C  T  M  L  Q  Y  K  N  T  R  V  D  K  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0212C17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 262 chains have been computed
$ 
$ memory statistics:
$ 516272 bytes spliced alignments in total
$ 212 spliced alignments have been stored
$ 2435 bytes was the average size of a spliced alignment
$ 25424 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1694 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 279 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:05:03
-->
