<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:14:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241363" ref_strand="+" ref_description="SGN-E241363 [cLED-28-D7]">
      <seq>agagcaaaaaccttcgttctctgagtctcagaatgtgaatcaaggtggcgagaatggaaactctgtaataagtagtgagctctatttgaaatcatcgactgatcaccaaaatcttgacaaaaatgttgtgttgaggagacttcgttttcacaaagttcgtgcaaagttgcagggtctattggacacaaggaattatgattattacgagcacaagtggttagaacagggcgacgttttctgctccccctaggccctctctctctctgtttttgtcttctgtgcctaagatttaaagtaatgacgagttcaattttaacatcaaatatattgcaatcatcatcatattattggttatagagaaatttcctatttctttaaggtttagtaacatatattagtataagttgaaccatgtaaatatcgcttccttttctgtttagataataatgcacttttctcgtgtttctgctctttcaaataaaattgagtatcaaacttgtgttccgtcaaaccacgtacttcacataaattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="2405" stop="1271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2105" g_stop="1571" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E241363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2105" e_stop="1571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAA</genome_strand>
        <mrna_strand>AGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244061" ref_strand="+" ref_description="SGN-E244061 [cLEE-1-N23]">
      <seq>aagagcaaaaaccttcgttctctgagtctcagaatgtgaatcaaggtggcgagaatggaaactctgtaataagtagtgagctctatttgaaatcatcgactgatcaccaaaatcttgacaaaaatgttgtgttgaggagacttcgttttcacaaagttcgtgcaaagttgcagggtctattggacacaaggaattatgattattacgagcacaagtggttagaacagggcgacgttttctgctccccctaggccctctctctctctgtttttgtcttctgtgcctaagatttaaagtaatgacgagttcaattttaacatcaaatatattgcaatcatcatcatattattggttatagagaaatttcctatttctttaaggtttagtaacatatattagtataagttgaaccatgtaaatatcgcttccttttctgtttagataataatgcacttttctcgtgtttctgctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="2406" stop="1332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2106" g_stop="1632" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E244061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2106" e_stop="1632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTT</genome_strand>
        <mrna_strand>AAGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273495" ref_strand="+" ref_description="SGN-E273495 [cLEN-3-J12]">
      <seq>gagcaaaaaccttcgttctctgagtctcagaatgtgaatcaaggtggcgagaatggaaactctgtaataagtagtgagctctatttgaaatcatcgactgatcaccaaaatcttgacaaaaatgttgtgttgaggagacttcgttttcacaaagttcgtgcaaagttgcagggtctattggacacaaggaattatgattattacgagcacaagtggttagaacagggcgacgttttctgctccccctaggccctctctctctctgtttttgtcttctgtgcctaagatttaaagtaatgacgagttcaattttaacatcaaatatattgcaatcatcatcatattattggttatagagaaatttcctatttctttaaggtttagtaacatatattagtataagttgaaccatgtaaatatcgcttccttttctgtttagataataatgcacttttctcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="2404" stop="1344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2104" g_stop="1645" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="479"/>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E273495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2104" e_stop="1645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGT</genome_strand>
        <mrna_strand>GAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240910" ref_strand="+" ref_description="SGN-E240910 [cLED-24-K9]">
      <seq>ttttatgttgtgagatacaaaaaaatatggcttttgcgatatccaaagagaaaataggcagtgatgatcaagatagtgtcgagacagagagagtaataagtagccaactctatttgaagtcatcgtcccatgaaaatcttgacaaaaatgttgtgctgaggagacttcgtcaccataaatacttgcaaaaggttcgtggaaatttgaagactctattggacagttattcgacaagggattattatgagcacaagtggcttgaacagggcgacgttttctgctccccttagcatatatattttccttcttgtaccaaacatccttacctctctgtctcttgagtttctgtgggcggagcctaaattttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="3544" stop="2575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3244" g_stop="2875" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E240910" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3244" e_stop="2875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATTTCCCTCCTTGTACCAAACATCCTTACCTCTCTGTCTCTTGAGTTTCTGTGGGCGGAGCCTAAA-TTTGAAG</genome_strand>
        <mrna_strand>TTTTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATTTTCCTTCTTGTACCAAACATCCTTACCTCTCTGTCTCTTGAGTTTCTGTGGGCGGAGCCTAAATTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239522" ref_strand="+" ref_description="SGN-E239522 [cLED-23-N22]">
      <seq>ttatgttgtgagatacaaaaaaatatggcttttgcgatatccaaagagaaaataggcagtgatgatcaagatagtgtcgagacagagagagtaataagtagccaactctatttgaagtcatcgtcccatgaaaatcttgacaaaaatgttgtgctgaggagacttcgtcaccataaatacttgcaaaaggttcgtggaaatttgaagactctattggacagttattcgacaagggattattatgagcacaagtggcttgaacagggcgacgttttctgctccccttagcatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="3542" stop="2645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3242" g_stop="2945" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E239522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3242" e_stop="2945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATT</genome_strand>
        <mrna_strand>TTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544991" ref_strand="+" ref_description="SGN-E544991 [TUS-67-J19](-)">
      <seq>aacattttcttgtcttaaagctttttctaggaaaaagaataaatagcaagtgcattttgttcatatgagaggataatagatgatccttcccctttcgtttttattccaaatgtatataacaaagcaaaaataaataaatttttttttggtcttcctgtatgcctacacaagaatttagcacagaaactttctacattctattgaacattgtatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="4269" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3969" g_stop="3754" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E544991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3969" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</genome_strand>
        <mrna_strand>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544992" ref_strand="+" ref_description="SGN-E544992 [TUS-67-J19]">
      <seq>aacattttcttgtcttaaagctttttctaggaaaaagaataaatagcaagtgcattttgttcatatgagaggataatagatgatccttcccctttcgtttttattccaaatgtatataacaaagcaaaaataaataaatttttttttggtcttcctgtatgcctacacaagaatttagcacagaaactttctacattctattgaacattgtatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="4269" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3969" g_stop="3754" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E544992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3969" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</genome_strand>
        <mrna_strand>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308892" ref_strand="+" ref_description="SGN-E308892 [cLEY-23-J21]">
      <seq>ttaaagctttttctaggaaaaagaataaatagcaagtgcatggtgttcatatgagaggataatagatgatccttcccctttcgtttttattccaaatgtatataacaaagcaaaaataaataaatttttttttggtcttcctgtatgcctacacaagaatttagcacagaaactttctacattctattgaacattgtatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="4255" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3955" g_stop="3754" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E308892" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3955" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</genome_strand>
        <mrna_strand>TTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATGGTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470270" ref_strand="+" ref_description="SGN-E470270 [cSTB-17-D21]">
      <seq>actttcaaactaattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatacttcggtgatctagggaaaacttttaagtcagcaggatcaaatatcctgtttgctgctgtcactgaaatatcagactcggttctgaaaggagcagaagctagtggtttaaatggaatggtgaatggttttcatcaaggaatacttaaattggcaatggaacctatgctactggggagtgctttcatggaaggtggccctgatcgaaaaattgggcttgatcgaagtcctggggttgatgagctatacattgaagggtatctccaagccatgttagatacattgtctaagcaagaatacctgagagtcagagtcattgacaaccaggttatcctgaagaacctaccaccaagcagttctcttatagatgagattgtggaacgtgtgaagggatttctcgttagcaaaacattgttgaaaggagatacttcaacagctgctcgttccttgcgccacatgaggggggaacatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="6933" stop="4303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6633" g_stop="6553" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6468" g_stop="6373" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="177" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6372" i_stop="6226" i_length="147">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6225" g_stop="6103" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6102" i_stop="5143" i_length="960">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5142" g_stop="5059" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="384" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5058" i_stop="4748" i_length="311">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4747" g_stop="4606" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="526" r_length="142" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E470270" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6633" e_stop="6553"/>
          <exon e_start="6468" e_stop="6373"/>
          <exon e_start="6225" e_stop="6103"/>
          <exon e_start="5142" e_stop="5059"/>
          <exon e_start="4747" e_stop="4606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATGGTAAGAACATCTTATCTGATAGCATTACAAATACTGTAACTACTAAGTGCCAACTTGAAGTGTTCAACCTTGATCTAGTGCTAGTTAGGTACTATTTCAGATTGTAATTTGGCTGTCACCCGAATCGATTTGATATGTTCTTTCCAGGTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAGGTACAACACATTCACGGATGATTTCTTATCCATTTCATTTTCTTTCTGTTAGAGATAACAGATGCTGGTGGATGCAAACTTCTGTTGTTTGAGTGGGATAAATCAATGCTACATTTTAATGTGCCATCCGGAAGTATTCGGACAGTTTGGTCAAAGCTCAAATGAGATGGTTGTGTTGATTGACATAACTGGCATGGTTTTGGTGCAGCTCAGTGAGCTTTTAACTCGTGTCTAACTTGCCATTCCCCCTGGATCTTCATGACTCATCTATCTTGTAAAAGGGGAAGAGGATGATTTTTATCATGGAAGGGATCAATTTATACGACATTGAATAAGCGCACTTTAAACTGCATAAAACCTGTAGAATGGTGAACCAAATAACTGTTGATGGAGTAAAAAATATCAGCTATAGTCTACATGGTATTAACTTCAGGTGCAACGACTCATCATTTCTGTAGGCCTAAAAGTTGTAATATGGCCTACAGGAATCTAATTAGATCAACCATAATCTGTTTCTTATCAAATAAATGGCCTACAGGAATCTAAGTAAGATCAACCATAATCTGTTTCTTATCAAAGAAAATGGCTTACAGGGATCCAATTTCCTTTGGATGAAAGAAAATAGCTAGATGGCTCTGAAGAGCTTGGAAATTTTAAAGATAGTTGTTGTCTTGTTGATGAAGCATCTGATTTCTATCTGAGGGCCTGTTGTCAGGCTAACAATGAATATCTCCTGCTAATTCTGTTACATATCTGCCGTTATTGCTCTTGTTGTTGGTGTGACAGTTTAGTTAGTCCTCTCTCTCCTGTTGTTTTTGGGGGTTTTACAAACATGTAGTGCTGAATATTTCAATGCACTGCGGTTACTGTCATCTCATATCTAGTGTGTGTTTGGGAGGTTATAGTTATTCTAGCATATTAAAGCATCAAATTTTAGTGACCCTTTCGGTTGTAATGCAGCTATACATTGAAGGGTATCTCCAAGCCATGTTAGATACATTGTATAAGCAAGAATACCTGAGAGTCAGAGTCATTGACAACCAGGTAACTAAAAATTATGTTCTTTGTGCGTGTGTGGTTTGCGCTTTTCAAAGATATGCCAAAATTAAAAACTTGTAGCACTGCCTTTTATTTACTTATAAATATGCCGCGGCTGAAAACTTCTAGGCACTGTAATTACATTCTTCATGAGACTGAATTTTTTTGTCAGAACTACAGTAAAATTAGTAATACAGTAGGGTATCTAGCTTGCTTAGCTCTAATTTCTGTTCATAGCAAATTAAGTTCCACATGTAGTGATGCCAATCTCAAAATGCAACATAAATTGCAAATGGCTTTTATGTTTTATTGTGAAGGTTATCCTGAAGAACCTACCACCAAGCAGTTCACTTATAGAAGAGATTGTGGAACGTGTGAAGGGATTTCTTGTTAGCAAAACATTGTTGAAAGGAGATACTTCAACAGCTGCTCGTCCCTTGCGTCACATGAGGGGGGAAC</genome_strand>
        <mrna_strand>ACTTTCAAACTAATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTCGGTGATCTAGGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG...................................................................................................................................................GTGAATGGTTTTCATCAAGGAATACTTAAATTGGCAATGGAACCTATGCTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACATTGAAGGGTATCTCCAAGCCATGTTAGATACATTGTCTAAGCAAGAATACCTGAGAGTCAGAGTCATTGACAACCAG.......................................................................................................................................................................................................................................................................................................................GTTATCCTGAAGAACCTACCACCAAGCAGTTCTCTTATAGATGAGATTGTGGAACGTGTGAAGGGATTTCTCGTTAGCAAAACATTGTTGAAAGGAGATACTTCAACAGCTGCTCGTTCCTTGCGCCACATGAGGGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235595" ref_strand="+" ref_description="SGN-E235595 [cLED-11-P20]">
      <seq>agatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctagggaaaacttttaagtcagcaggatcaaatatcctgtttgctgctgtcactgaaatatcagactcggttctgaaaggagcagaagctagtggtttaaatggaatggtgaatggtttccatcaaggaatacttaaattggcaatggaacctacattactggggagtgctttcatggaaggtggccctgatcgaaaaattgggcttgatcgaagtcctgaggttgatgagctatacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="8124" stop="5795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7824" g_stop="7716" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7635" g_stop="7487" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6635" g_stop="6553" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="341" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6468" g_stop="6373" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="437" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6372" i_stop="6226" i_length="147">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6225" g_stop="6103" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="560" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E235595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7824" e_stop="7716"/>
          <exon e_start="7635" e_stop="7487"/>
          <exon e_start="6635" e_stop="6553"/>
          <exon e_start="6468" e_stop="6373"/>
          <exon e_start="6225" e_stop="6103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATGGTAAGAACATCTTATCTGATAGCATTACAAATACTGTAACTACTAAGTGCCAACTTGAAGTGTTCAACCTTGATCTAGTGCTAGTTAGGTACTATTTCAGATTGTAATTTGGCTGTCACCCGAATCGATTTGATATGTTCTTTCCAGGTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG</genome_strand>
        <mrna_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG...................................................................................................................................................GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGAGGTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255438" ref_strand="+" ref_description="SGN-E255438 [cLEG-30-C11]">
      <seq>ctcgatgaagagacattaatgagaattgttcctttctggagaacgtccctcagagatacaaatactccaagtcaaaagtattacattgatcattttgagatacatcctgttaaggttgtggcaagctttcttccaggggaatcttatgctaaccatagctccacgcaagagacactaagatctttacttcacagtgttataaagatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctagggaaaacttttaagtcagcaggatcaaatatcctgtttgctgctgtcactgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="8859" stop="6121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8559" g_stop="8446" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8445" i_stop="8345" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8344" g_stop="8255" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="204" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8254" i_stop="7823" i_length="432">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7822" g_stop="7716" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="311" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7635" g_stop="7487" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="460" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6635" g_stop="6553" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="543" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6468" g_stop="6421" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="591" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E255438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8559" e_stop="8446"/>
          <exon e_start="8344" e_stop="8255"/>
          <exon e_start="7822" e_stop="7716"/>
          <exon e_start="7635" e_stop="7487"/>
          <exon e_start="6635" e_stop="6553"/>
          <exon e_start="6468" e_stop="6421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAGGTGTCTACAGAACTTTGGTTTCACTATGCGCCCCTTCCCAAGGAAGTTATTTTATCACCAAGAATTAACTCGCGTTTTCTATCCTAATAATGTTCCTAAAGGTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAGGTCTGATACATAGTACTTCCTCTGTCCCTTTTACGTGACACCATTTGAGTGGAATGGAGTTTAATATGTTAAGATGGCTTCTATATCACATTAAGAGAGTAGTTGAAAAGTTAGTTTCAGAGAGAACACAATATTATAGTTCAAAATTTGAACTCTTGAAACTTGTGATAGTTGAAAACAAAAATGAAGCTAATTTACTGTTCTTGTCATTATATCTATAATTGCTTCCAATAATTATGAATATATAGTGAATTTCTTGCGGAAGCCACTACTAGGATGATGTCAACTTGTCCCAGGATGGAAGGATATAATGTCAATTGATGAGGGAATATTAAAATTCATTACAGTTGTTCATACTTACTATTTGAGCAAAGGTCTTTTCTTGATTATACCTGTGGTGTAACATTCTGTTTCCGATATCTGCATTTTTAGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATA</genome_strand>
        <mrna_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG.....................................................................................................GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239490" ref_strand="+" ref_description="SGN-E239490 [cLED-23-D4]">
      <seq>agatacctcctgtcaaaaatatgaccgtagagctcaagggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctaaggaaaacttttaagtcagcaggatcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="8124" stop="6147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7824" g_stop="7716" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7635" g_stop="7487" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6635" g_stop="6553" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="341" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.752" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6468" g_stop="6447" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="363" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E239490" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7824" e_stop="7716"/>
          <exon e_start="7635" e_stop="7487"/>
          <exon e_start="6635" e_stop="6553"/>
          <exon e_start="6468" e_stop="6447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATA</genome_strand>
        <mrna_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAAGGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAAGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260279" ref_strand="+" ref_description="SGN-E260279 [cLEG-53-J6]">
      <seq>ctcgatgaagagacattaatgagaattgttcctttctggagaacgtccctcagagatacaaatactccaagtcaaaagtattacattgatcattttgagatacatcctgttaaggttgtggcaagctttcttccaggggaatcttatgctaaccatagctccacgcaagagacactaagatctttacttcacagtgttataaagatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="8859" stop="7200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8559" g_stop="8446" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8445" i_stop="8345" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8344" g_stop="8255" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="204" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8254" i_stop="7823" i_length="432">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7822" g_stop="7716" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="311" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7635" g_stop="7500" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="447" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E260279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8559" e_stop="8446"/>
          <exon e_start="8344" e_stop="8255"/>
          <exon e_start="7822" e_stop="7716"/>
          <exon e_start="7635" e_stop="7500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAGGTGTCTACAGAACTTTGGTTTCACTATGCGCCCCTTCCCAAGGAAGTTATTTTATCACCAAGAATTAACTCGCGTTTTCTATCCTAATAATGTTCCTAAAGGTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAGGTCTGATACATAGTACTTCCTCTGTCCCTTTTACGTGACACCATTTGAGTGGAATGGAGTTTAATATGTTAAGATGGCTTCTATATCACATTAAGAGAGTAGTTGAAAAGTTAGTTTCAGAGAGAACACAATATTATAGTTCAAAATTTGAACTCTTGAAACTTGTGATAGTTGAAAACAAAAATGAAGCTAATTTACTGTTCTTGTCATTATATCTATAATTGCTTCCAATAATTATGAATATATAGTGAATTTCTTGCGGAAGCCACTACTAGGATGATGTCAACTTGTCCCAGGATGGAAGGATATAATGTCAATTGATGAGGGAATATTAAAATTCATTACAGTTGTTCATACTTACTATTTGAGCAAAGGTCTTTTCTTGATTATACCTGTGGTGTAACATTCTGTTTCCGATATCTGCATTTTTAGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCT</genome_strand>
        <mrna_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG.....................................................................................................GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547072" ref_strand="+" ref_description="SGN-E547072 [TUS-70-M6]">
      <seq>catatatgtagttccaattttcctgaatcttttttccctcatgatttcatttttgtacttcttcttttcatgaggaaatagcacaatgaggaattcaagaaaaagcaaaatgacaacagaagagaacagtcattccaaacaagcgttatctgatcctaatgaagatgaatattcttttcgaataagccacaaatccgaaactagccatcttcctcctcgattaagttctgattatagctctcctcttgcaacatctccgacaagggattcatcagcatctccatatttagatccctattgggaccagagtcaccagacatcaccattatctagatctccatggacatctcacgttgagaataattattcctatacagggctcatggggtccctcgttcgcgaagaaggacatatatattctttagcagcgtcaggggatttgttatacacgggatctgatagtaagaatataagggtgtggaagaatcacagagaattttccgggttcaaatcaaatagtgggttggtaaaggcaattattttatgtggagaacgaattttcacgggtcatcaagacgggaagatccgagtctggaaggtttctggtaaggattcaagcgtttacaatcgaattggaactttgccaactttaatggcttatataaaaacttcaatgaaaccaagcaattacatccaaacaaggcgtaatagaaataccgtgtggataaagcattttgatgccatttcatgccttagcatgagcgaggaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="45847" stop="47210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46184" g_stop="46910" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="773" r_length="727" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E547072" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46184" e_stop="46910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTTGTACTTCTTCTTTTCATGAGGAAATAGCACAATGAGGAATTCAAGAAAAAGCAAAATGACAACAGAAGAGAACAGCCATCCCAAACAAGCGTTACATGATCCTAATGAAGATGAATATTCTTTTCGAATAAGCCACACATCCGAAACTAGCCATCTCCCTCCTCGATTAAGTTCTGATTATAGCTCTCCTCTTGCAACATCTCCGACAAGGGATTCATCAGCATCTCCATATTTAGATCCCTATTGGGACCAGAGTCACCAGACATCACCATTATCTAGATCTCCATGGACATCTCACGTTGAGAATAATTATTCCTATACAGGGCTCATGGGGTCCCTCGTTCGCGAAGAAGGACATATATATTCTTTAGCAGCGTCAGGGGATTTGTTATACACGGGATCTGATAGTAAGAATATAAGGGTGTGGAAGAATCACAAAGAATTTTCCGGATTCAAATCAAATAGTGGATTGGTGAAGGCAATTATTTTGTGTGGAGAACGAATTTTCACGGGTCATCAGGACGGGAAGATCCGAGTCTGGAAGGTTTCTGGTAAGGATTCAAGCGTTTACAATCGAATTGGAACTATGCCAACTTTAATGGCTTATATAAAAACTTCAATGAAACCAAGCAATTACATCCAAACAAGGCGTAATAGAAATACCGTGTGGATAAAGCATTTTGATGCCATTTCATGCCTTAGCATGAGCGAGGACCAAA</genome_strand>
        <mrna_strand>TCATTTTTGTACTTCTTCTTTTCATGAGGAAATAGCACAATGAGGAATTCAAGAAAAAGCAAAATGACAACAGAAGAGAACAGTCATTCCAAACAAGCGTTATCTGATCCTAATGAAGATGAATATTCTTTTCGAATAAGCCACAAATCCGAAACTAGCCATCTTCCTCCTCGATTAAGTTCTGATTATAGCTCTCCTCTTGCAACATCTCCGACAAGGGATTCATCAGCATCTCCATATTTAGATCCCTATTGGGACCAGAGTCACCAGACATCACCATTATCTAGATCTCCATGGACATCTCACGTTGAGAATAATTATTCCTATACAGGGCTCATGGGGTCCCTCGTTCGCGAAGAAGGACATATATATTCTTTAGCAGCGTCAGGGGATTTGTTATACACGGGATCTGATAGTAAGAATATAAGGGTGTGGAAGAATCACAGAGAATTTTCCGGGTTCAAATCAAATAGTGGGTTGGTAAAGGCAATTATTTTATGTGGAGAACGAATTTTCACGGGTCATCAAGACGGGAAGATCCGAGTCTGGAAGGTTTCTGGTAAGGATTCAAGCGTTTACAATCGAATTGGAACTTTGCCAACTTTAATGGCTTATATAAAAACTTCAATGAAACCAAGCAATTACATCCAAACAAGGCGTAATAGAAATACCGTGTGGATAAAGCATTTTGATGCCATTTCATGCCTTAGCATGAGCGAGGACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547071" ref_strand="+" ref_description="SGN-E547071 [TUS-70-M6](-)">
      <seq>agcaagaatgcgctgtaacagctttagctgttgacccttcatccaatttcctatatngtggctcttcagatgggctagtcaatttttggcaaggcgacaagcttctatctcatggaggagtgttaaggggtcataaacttgcaacactctgtttagcagcggcggggaatttaattttcagtggatcagctgataacaatatttgcgtgtggaaaagggacggagcagaacatatgtgtttatcagtgttgagcggacattctggtccggttaaatgcttggctgttgaagaggaacaacaacaaaaaggtagtgataaacaatttattgtttacagcgggagcctcgataaatcagtgaagatttggaggatatcgtcgcagttggtaccaaatcaggcggaagtggggatgagtccaccgcaaaattttcctacatcaaatagctgcagagttagccaaaggagaaaatagcaatggagacttttgacaattgtatagacgcagctagctttggaaattgaccaagtaagaaattatctacatgttttgctagctttgcagagaaatttgtaaatgaaaactttatttgtattttcacccattggagttcgacacaaatgtcaatggctgttgatgtatttgaatttgctcttgtttccgtctatttgactgacaacaaagtaacaaacagatgagttatctacatttcttgtatagtatcatgatcatcttcatttctattccccatatgtaacttgacacttcaatgtgaaatctcttaattgaacgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="46833" stop="48231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47133" g_stop="47940" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E547071" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47133" e_stop="47940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGAATGCGCTGTAACAGCCTTAGCTGTTGACCCTTCATCCAATTTCCTATATTGTGGCTCTTCAGATGGGCTAGTCAATTTTTGGCAAGGCGACAAGCTTCTATCTCATGGAGGAGTGTTAAGGGGTCATAAACTTGCAACACTCTGTTTAGCAGCGGCGGGGAATTTAATTTTCAGTGGATCAGCTGATAACAATATTTGCGTGTGGAAAAGGGACGGAGCAGAACATATATGTTTATCAGTGTTGAGCGGACATTCTGGTCCGGTTAAATGCTTGGCTGTTGAAGAGGAACAACAACAAAAAGGTAGTGATAAACAATTTATTGTTTACAGCGGGAGCCTCGATAAATCAGTGAAGATTTGGAGGATATCGTCGCAGTTGGTACCAAATCAGGCGGAAGTGGGGATGAGTCCACCGCAAAATTTTCCTACATCAAATAGCTGCAGAGTTAGCCAAAGGAGAAAATAGCAATGGAGACTTTTGACAATTGTATAGACGCAGCTAGCTTTGGAAATTGACCAAGTAAGAAATTATCTACATGTTTTGCTAGCTTTGCAGAGAAATTTGTAAATGAAAACTTTATTTGTTTTGTATTTTCACCCATTGGAGTTCGACACAAATGTCAATGGCTGTTGATGTATTTGAATTTGCTCTTGTTTCCGTCTATTTGACTGACAACAAAGTAAC-AACAGATGAGTTATCTACATTTCTTGTATAGTATGATGATCATCTTCATTTCTATT-CCCATATGTAACTTTGACACTTCAATGTGAAATCTCTTGAATTTGAACAAAGTGAAACTA</genome_strand>
        <mrna_strand>AGCAAGAATGCGCTGTAACAGCTTTAGCTGTTGACCCTTCATCCAATTTCCTATATNGTGGCTCTTCAGATGGGCTAGTCAATTTTTGGCAAGGCGACAAGCTTCTATCTCATGGAGGAGTGTTAAGGGGTCATAAACTTGCAACACTCTGTTTAGCAGCGGCGGGGAATTTAATTTTCAGTGGATCAGCTGATAACAATATTTGCGTGTGGAAAAGGGACGGAGCAGAACATATGTGTTTATCAGTGTTGAGCGGACATTCTGGTCCGGTTAAATGCTTGGCTGTTGAAGAGGAACAACAACAAAAAGGTAGTGATAAACAATTTATTGTTTACAGCGGGAGCCTCGATAAATCAGTGAAGATTTGGAGGATATCGTCGCAGTTGGTACCAAATCAGGCGGAAGTGGGGATGAGTCCACCGCAAAATTTTCCTACATCAAATAGCTGCAGAGTTAGCCAAAGGAGAAAATAGCAATGGAGACTTTTGACAATTGTATAGACGCAGCTAGCTTTGGAAATTGACCAAGTAAGAAATTATCTACATGTTTTGCTAGCTTTGCAGAGAAATTTGTAAATGAAAACTTTA-----TTTGTATTTTCACCCATTGGAGTTCGACACAAATGTCAATGGCTGTTGATGTATTTGAATTTGCTCTTGTTTCCGTCTATTTGACTGACAACAAAGTAACAAACAGATGAGTTATCTACATTTCTTGTATAGTATCATGATCATCTTCATTTCTATTCCCCATATGTAAC-TTGACACTTCAATGTGAAATCTCTT-AA-TTGAACGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418245" ref_strand="+" ref_description="SGN-E418245 [STM-27-K7]">
      <seq>caccatcaccgagggctacatactacagtatattacaaaaaattgctcttgcaaaagttatatatttcttgttctttaattgcacaaaagaacctaccagattagccatttacaagcctattctgttaaaataagtgattttactcatccattggcaaacgtctttcagtcatctggtcgtcaactctgctttgttctcttcttttaccaacatatcaatatctacaagtaacacatcttatggacataacttttctttcaaaaaagaatacttttgaagctctcatgtgttcaaggtgagaaagaacttgcatcagtgctataaaatgagtactcactcaagctgaagtttaaccgctcttcgtcccacttgattatctcccttgcatacttgagcgattcatccaccgtttttggctctaaacctttcactagtgaaacatacagcttcttgttagtgagagaagaaaggagcctcttgaattttactgcaacatgatgaaatgccaactggcccacagaggggcaatggttgatgctgctggagttgctattggagcgatgacgacttacgagcggatgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="58967" stop="57777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58898" g_stop="58897" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58896" i_stop="58669" i_length="228">
            <donor d_prob="0.764" d_score="0.00"/>
            <acceptor a_prob="0.788" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58668" g_stop="58077" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="588" r_length="586" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E418245" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58898" e_stop="58897"/>
          <exon e_start="58668" e_stop="58077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAGAATAGCAATTTTTTTAATTTCTTAAGTTGGAATTTTTTTTAAAATTTTTTGTGGCTCATAAAAATGAAAACCTTGCAATTTATGAAAATTTCTCAAAACTCTTATACTAACCAGCATGAAGTAAGCTAACTTGCAAAGTGTACACACATAAGACATTTAATTAGCAATCATTTCCCACTCTAATTTGATTAAACACTATATTATACAATTTGATCACCATCAGTCCATCACCGAGGGCTACATACACTACAGTATCTTACAAAAAATTGCCAAAGCAGAAGCTATATCTTTCTTGTTCTTTAATTGTACAAAAGAACCTACCAGATTAGCCATTTACAAGCCTATTCTGTAAAAATAACTGATTCTACTCGTTCATTGGCAAACGTCTTTTCAGTCATCTGGTCGTCAACTCTGCTCTGTTCTCTTCTTTTACCAAAACATATCAATATCTACAAGTAACACATCTTATGGACATAACTTTTCTTTCAAAAAAGAATTCTTTTGAAGCTCTCATGTGTTCAAGGTGAGAAGGAACTTGCATCAGTGCTGTAAAATGAGTACTCACTCAAACTGAAGTTTAACCGCTCTTCGTCCCACTTGATTATCTCCCTTGCATACTTGAGCGATTCATCCACCGTTTTTGGCTCTAAACCTTTCACTAGAGAAACATACAGCTTCTTGTTAGTGAGAGAAGAAAAGAGCCTCTTGAATTTTACTGCAACGTGATGAAATGCCAACTGGCCCACAGAGGGACTATGGTTGATGCTGCTGGAGTTGCTGTTGGAGCGATGGCGACTTACAAGCGGATGAAAATC</genome_strand>
        <mrna_strand>CA....................................................................................................................................................................................................................................-CCATCACCGAGGGCTACAT--ACTACAGTATATTACAAAAAATTGCTCTTGCAAAAGTTATATATTTCTTGTTCTTTAATTGCACAAAAGAACCTACCAGATTAGCCATTTACAAGCCTATTCTGTTAAAATAAGTGATTTTACTCATCCATTGGCAAACGTC-TTTCAGTCATCTGGTCGTCAACTCTGCTTTGTTCTCTTCTTTTACC--AACATATCAATATCTACAAGTAACACATCTTATGGACATAACTTTTCTTTCAAAAAAGAATACTTTTGAAGCTCTCATGTGTTCAAGGTGAGAAAGAACTTGCATCAGTGCTATAAAATGAGTACTCACTCAAGCTGAAGTTTAACCGCTCTTCGTCCCACTTGATTATCTCCCTTGCATACTTGAGCGATTCATCCACCGTTTTTGGCTCTAAACCTTTCACTAGTGAAACATACAGCTTCTTGTTAGTGAGAGAAGAAAGGAGCCTCTTGAATTTTACTGCAACATGATGAAATGCCAACTGGCCCACAGAGGGGCAATGGTTGATGCTGCTGGAGTTGCTATTGGAGCGATGACGACTTACGAGCGGATGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419883" ref_strand="+" ref_description="SGN-E419883 [STM-30-I18]">
      <seq>ctttcacccatcacggcgagtcatgggaggacccttacagctggatgtcacagctcaatgacaaagtagccatgcgccatatggatgtgtacatggaacaagaggagaaatacattgaagccgttatgtccgataccgaacgcctccagtccaaacttcagtcggaaatgggctctcgcttgtcaaatgaactctccacacctccccttcgttggggtccttggttgtactataggcgagtggaagaagggaagcagtatccagtgctgtgtagaaggttagcacgggcgaatgaagatttcatttccaataaatctccttcagcaggtttcgattttacttcggggaagagaattgagcagaagcttcttgactacaatgaagaagctgaaagatttggaggttatgcatatgaagaattatcagaagtgtcccctgatcaccgatatctagcatacacaatgtatgataaggataacgattgctttaaattgtctgtgcgagacttaaatttcggttcactatgtagtaagccccaagcagatcgggtttcaaacatagcttgggggaaagatggacaagcattactctatgttgtcactgatcactgtaagaagccctatagaatctactgtagtatgattgggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="62401" stop="64118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62701" g_stop="62923" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62924" i_stop="63117" i_length="194">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63118" g_stop="63296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="402" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63297" i_stop="63489" i_length="193">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63490" g_stop="63712" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="625" r_length="223" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63713" i_stop="63792" i_length="80">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.887" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63793" g_stop="63818" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="651" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E419883" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62701" e_stop="62923"/>
          <exon e_start="63118" e_stop="63296"/>
          <exon e_start="63490" e_stop="63712"/>
          <exon e_start="63793" e_stop="63818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACCCATCACGGCGAGTCATGGGAGGACCCTTACAGCTGGATGTCACAGCTCAATGACAAAGTAGCCATGCGCCATATGGATGTGTACATGGAACAGGAGGAGAAATACATTGAAGCCGTTATGTCCGATACCGAACGCCTCCAGTCCAAACTTCAGTCGGAAATGGGCTCTCGCTTGTCAAATGAACTCTCCACACCTCCCCTTCGTTGGGGTCCTTGGTATTGTTCCGTTTAACTTCCTTGTTACAACAATCGAGCATAATTCATAGTTTAGGATTGAAGCATAGTAGTTGTTGTTCTTATGTTATTGAGATATTTATTTGGATATAGATCCCCGCATATTTTGTCGTTGTTTGGATTCTGAAATTTGAAAATTGTGTTTACTCTATGGAGGTGGATATTGGTCGCCGCAGGTTGTACTATAGGCGAGTGGAAGAAGGGAAGCAGTATCCAGTGCTGTGTAGAAGGTTAGCACGGGCAAATGAAGATTTCATTTCCAATAGATCTCCTTCAGCAGGTTTTGATTTTACTTCGGGGAAGAGAATTGAGCAGAAGCTTCTTGACTACAATGAAGAAGCTGAAAGATTTGGAGGTTTTGCTTTTTTCTTGCTACCTTATTTTATGCTGATTTTCCAAACAGAGTGGAATGTTTGTTGAGGACTTACATAGCCGACCTTATTTAGTTTGGAGTTGAGGTTTGGTGCAGTAGTAGTGGTTGCTGATTTTATGGTTCTTTTTACTCGTTGTGTATATTGTATAACCCTTTTTCCTTTGTTAAATTACAGGTTATGCATATGAAGAATTATCAGAAGTGTCCCCTGATCACCGATATCTAGCTTACACAATGTATGATAAGGATAACGATTGCTTTAAATTGTCTGTGCGAGACTTAAATTTCGGTTCACTATGTAGTAAGCCCCAAGCAGATCGGGTTTCAAACATAGCTTGGGGGAAAGATGGACAAGCATTACTCTATGTTGTCACTGATCACTGTAAGAGGCCTTATAGGTTGGTAATTTACTTATTTGGTTAAAAGACTCTTTTTGACGTACTCCAGATATCTCAGTTGTTTCCAATTCTTTTTTCAGAATCTACTGTAGTATGATTGGGTCTG</genome_strand>
        <mrna_strand>CTTTCACCCATCACGGCGAGTCATGGGAGGACCCTTACAGCTGGATGTCACAGCTCAATGACAAAGTAGCCATGCGCCATATGGATGTGTACATGGAACAAGAGGAGAAATACATTGAAGCCGTTATGTCCGATACCGAACGCCTCCAGTCCAAACTTCAGTCGGAAATGGGCTCTCGCTTGTCAAATGAACTCTCCACACCTCCCCTTCGTTGGGGTCCTTG..................................................................................................................................................................................................GTTGTACTATAGGCGAGTGGAAGAAGGGAAGCAGTATCCAGTGCTGTGTAGAAGGTTAGCACGGGCGAATGAAGATTTCATTTCCAATAAATCTCCTTCAGCAGGTTTCGATTTTACTTCGGGGAAGAGAATTGAGCAGAAGCTTCTTGACTACAATGAAGAAGCTGAAAGATTTGGAG.................................................................................................................................................................................................GTTATGCATATGAAGAATTATCAGAAGTGTCCCCTGATCACCGATATCTAGCATACACAATGTATGATAAGGATAACGATTGCTTTAAATTGTCTGTGCGAGACTTAAATTTCGGTTCACTATGTAGTAAGCCCCAAGCAGATCGGGTTTCAAACATAGCTTGGGGGAAAGATGGACAAGCATTACTCTATGTTGTCACTGATCACTGTAAGAAGCCCTATAG................................................................................AATCTACTGTAGTATGATTGGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445287" ref_strand="+" ref_description="SGN-E445287 [cSTA-45-C17]">
      <seq>ctttcacccatcacggcgagtcatgggaggacccttacagctggatgtcacaggtcaatgacaaagtagccatgcgccatatggatgtgtacatggaacaagaggagaaatacattgaagccgttatgtccgataccgaacgcctccagtccaaactacaatcggaaatgggctctggcttgtcaaatgaactctccacacctccccttcgttggggtccttggttgtactataggcgagtggaagaagggaagcagtatccagtgctgtgtagaaggttagcacgggcgaatgaagatttcatttccaataaatctccttcagcaggtttcgattttacttcggggaagagaattgagcagaagcttcttgactacaatgaagaagctgaaagatttggaggttatgcatatgaagaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="62401" stop="63811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62701" g_stop="62923" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62924" i_stop="63117" i_length="194">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63118" g_stop="63296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="402" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63297" i_stop="63489" i_length="193">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63490" g_stop="63511" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="424" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E445287" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62701" e_stop="62923"/>
          <exon e_start="63118" e_stop="63296"/>
          <exon e_start="63490" e_stop="63511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACCCATCACGGCGAGTCATGGGAGGACCCTTACAGCTGGATGTCACAGCTCAATGACAAAGTAGCCATGCGCCATATGGATGTGTACATGGAACAGGAGGAGAAATACATTGAAGCCGTTATGTCCGATACCGAACGCCTCCAGTCCAAACTTCAGTCGGAAATGGGCTCTCGCTTGTCAAATGAACTCTCCACACCTCCCCTTCGTTGGGGTCCTTGGTATTGTTCCGTTTAACTTCCTTGTTACAACAATCGAGCATAATTCATAGTTTAGGATTGAAGCATAGTAGTTGTTGTTCTTATGTTATTGAGATATTTATTTGGATATAGATCCCCGCATATTTTGTCGTTGTTTGGATTCTGAAATTTGAAAATTGTGTTTACTCTATGGAGGTGGATATTGGTCGCCGCAGGTTGTACTATAGGCGAGTGGAAGAAGGGAAGCAGTATCCAGTGCTGTGTAGAAGGTTAGCACGGGCAAATGAAGATTTCATTTCCAATAGATCTCCTTCAGCAGGTTTTGATTTTACTTCGGGGAAGAGAATTGAGCAGAAGCTTCTTGACTACAATGAAGAAGCTGAAAGATTTGGAGGTTTTGCTTTTTTCTTGCTACCTTATTTTATGCTGATTTTCCAAACAGAGTGGAATGTTTGTTGAGGACTTACATAGCCGACCTTATTTAGTTTGGAGTTGAGGTTTGGTGCAGTAGTAGTGGTTGCTGATTTTATGGTTCTTTTTACTCGTTGTGTATATTGTATAACCCTTTTTCCTTTGTTAAATTACAGGTTATGCATATGAAGAATTATC</genome_strand>
        <mrna_strand>CTTTCACCCATCACGGCGAGTCATGGGAGGACCCTTACAGCTGGATGTCACAGGTCAATGACAAAGTAGCCATGCGCCATATGGATGTGTACATGGAACAAGAGGAGAAATACATTGAAGCCGTTATGTCCGATACCGAACGCCTCCAGTCCAAACTACAATCGGAAATGGGCTCTGGCTTGTCAAATGAACTCTCCACACCTCCCCTTCGTTGGGGTCCTTG..................................................................................................................................................................................................GTTGTACTATAGGCGAGTGGAAGAAGGGAAGCAGTATCCAGTGCTGTGTAGAAGGTTAGCACGGGCGAATGAAGATTTCATTTCCAATAAATCTCCTTCAGCAGGTTTCGATTTTACTTCGGGGAAGAGAATTGAGCAGAAGCTTCTTGACTACAATGAAGAAGCTGAAAGATTTGGAG.................................................................................................................................................................................................GTTATGCATATGAAGAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419884" ref_strand="-" ref_description="SGN-E419884 [STM-30-I18]">
      <seq>cccggggacattactgactttcaggcaatccgcaaatattcaccttacgataacattcaaaaagatattttatatccagctattctggtgacatcttcattcaacacacggtttggagtgtgggaagctgcaaaatatgttgctcgggtgcgtgaatgttccatctatgatcctaaacatccagtattacttaatttgacagctgatatagttgaagaaaatcgatacctgcactgcaaggagtcagcgctggagacagctttccttattaagatgatggaatcatagctattttcgctctgtttattaatttcatgtattatagaaaagtttatgtaccatatgatctcaaacttattttttcaccttccatatgaagccagattgtagtaagcagttaacgaatattcctactaatcttgccctttacagcaaaggtgttctccatgaggagaatgtcatttagtctttacttgcccacatttagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="66247" stop="67941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66547" g_stop="66656" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66657" i_stop="67254" i_length="598">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67255" g_stop="67615" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="460" r_length="350" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E419884" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419884" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66547" e_stop="66656"/>
          <exon e_start="67255" e_stop="67615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGGGACATTACTGACTTCCAGGCAATCCGCAAATATTCACCTTACGATAACATTCAAAAAGATCTTGTATATCCAGCTATTCTGGTGACATCTTCATTCAACACAAGGTAAGGTCTAATTTTTTGCTGACTGATCGACTTCCTCTGGCTTGTAAATCATCTTGTCAAGGTGACTAATCTATGGTCATTGTCTAAAGCCATGTCTTTTACCCTATCAATTTAAGTTTGATTTACAACAACCTATAGGAGTCAGTCCATCCTATAAATGGGACTTTGCTTTTAGTTTAACTTTATACTTGGAGATCACTTTGTGGTCATCCCTGGAAAATCATTTCTTTACGAGCTTGGTTGATATTTATTTTCCTAGCTTACAATGAAATTACTCTGCATCTGATAATGCTTAGGTGGAACGAGTGCTAAACAAGCTCCAATGATATCCACCCATATTAGGTGTTTTTCCTTATCTAGCACCGCTCATGTGCTACAGTGCTATGATCGACAACTAGGAAGGACCTTTGTATTATAATGAACCTGATCCACCAAGAATTATTCCAAGGTGTTAAATGACTGAAACTATCGTCATCCATTTATGGGTTACCAAGAATTGCTCCAAAGTCATCAAGTGAATAATTGCATAGGTTTGTGTTGAATAATTGCAGCTCATTGTGTTGCAAGGGCCTCCCAATAATCTTGCATGATTTTTCAGGTTTGGAGTGTGGGAAGCTGCAAAATATGTTGCTCGGGTGCGTGAATGTTCCATTTATGATCCTAAACACCCAGTATTACTTAATTTGACAGCTGATATAGTTGAAGAAAATCGATACCTGCACTGCAAGGAGTCAGCGCTGGAGACAGCTTTCCTTATCAAGATGATGGAATCATAGCCATTTTCGCTTTGTTTATTAATTTCATGTATTTTGTAGAAAAGCTTATGTACCATATGATCTC-AACTTATTTTTTCACCTTCCATATGAAGCCAGATTGTAGTAACACACTTTTAAGCAGTTAACAAATATTCTACTGATCTTGCCCTTTACAGCAAAGGTGTTCTCCATGAGGAGAAATTC</genome_strand>
        <mrna_strand>CCCGGGGACATTACTGACTTTCAGGCAATCCGCAAATATTCACCTTACGATAACATTCAAAAAGATATTTTATATCCAGCTATTCTGGTGACATCTTCATTCAACACACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAGTGTGGGAAGCTGCAAAATATGTTGCTCGGGTGCGTGAATGTTCCATCTATGATCCTAAACATCCAGTATTACTTAATTTGACAGCTGATATAGTTGAAGAAAATCGATACCTGCACTGCAAGGAGTCAGCGCTGGAGACAGCTTTCCTTATTAAGATGATGGAATCATAGCTATTTTCGCTCTGTTTATTAATTTCATGTA--TTATAGAAAAGTTTATGTACCATATGATCTCAAACTTATTTTTTCACCTTCCATATGAAGCCAGATTGTAGTAA-GCA--GTTAA-C-G---A-ATAT-TCCTACTAATCTTGCCCTTTACAGCAAAGGTGTTCTCCATGAGGAGAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544240" ref_strand="+" ref_description="SGN-E544240 [TUS-66-H13]">
      <seq>tgatgacactaccctttgcaaacccatggagaatggcaagtatgatggtagaagtgggtttgtgagagtcgaagttgttactgcttcacttggcttcctctctaattttgatgatgtctataagttgtgggcttttgtggctaaatttcttgaccctggttttattaaagaagctggactcccacctgttgcagaagacgtcgagtcatgaagctactaaatgaaggctgaattggtagctgtttgctcctaatataagatgcaggaatctatcaccaatagtggggtgaaaatctgatgaaagttgcaagagaaacaatgaaaaggtctgagttgtattcttttggcccctctgtttcttcgatgcatgcgggagaaatttttttattcttgtctttaattgcttgaatgtttctttaccattttggagtttcctgtagagttgggagttagaaatttgtattttctcaggtagtcatgaatcatgaagaaccaaagcagttataagccaggggttttatgatccctttccgccatttgcccctcttgcttctcagctgtgtataatgatcattcatgcttttgctcaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="70983" stop="69790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70683" g_stop="70090" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E544240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70683" e_stop="70090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATGCGGGAGAAATTTTTTTATTCTTGTCTTTAATTGCTTGAATGTTTCTTTACCATTTTGGAGTTTCCTGTAGAGTTGGGAGTTAGAAATTTGTATTTTCTCAGGTAGTCATGAATCATGAAGAACCAAAGCAGTTATAAGCCAGGGGTTTTATGATCCCTTTCCGCCATTTGCCCCTCTTGCTTCTCAGCTGTGTATAATGATCATTCATGCTTTTGCTCAGGCTA</genome_strand>
        <mrna_strand>TGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATGCGGGAGAAATTTTTTTATTCTTGTCTTTAATTGCTTGAATGTTTCTTTACCATTTTGGAGTTTCCTGTAGAGTTGGGAGTTAGAAATTTGTATTTTCTCAGGTAGTCATGAATCATGAAGAACCAAAGCAGTTATAAGCCAGGGGTTTTATGATCCCTTTCCGCCATTTGCCCCTCTTGCTTCTCAGCTGTGTATAATGATCATTCATGCTTTTGCTCAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544239" ref_strand="+" ref_description="SGN-E544239 [TUS-66-H13](-)">
      <seq>tgatgacactaccctttgcaaacccatggagaatggcaagtatgatggtagaagtgggtttgtgagagtcgaagttgttactgcttcactgggcttcctctctaattttgaggaggtctataagttgggggcttttgtggctaaattttttgacccgggttttattaaagaagctggactcccccctgttgcagaagacgtcgagtcatgaagctactaaatgaaggctgaattggtagctgtttgctcctaatataagatgcaggaatttatccccaatagtggggtgaaaatttgatgaaagttgcaagagaaacaatgaaaaggtttgagttgtatttttttggcccctctgttttttcgatgcatgggggagaaatttttttattcttgtcttaaattgcttgaatgtttttttaccattttggagtttcctgtagagttgggagttagaaatttgtattttttcaggtagtcatgaatcatgaagaaccaaagcagttataagccaggggttttatgatccctttccgccatttgcccctcttgtttttcagctgtgtataaagatcattcatgcttttgctcgggctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="70983" stop="69783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70683" g_stop="70091" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="647"/>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E544239" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70683" e_stop="70091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATGCGGGAGAAATTTTTTTATTCTTGTCTTTAATTGCTTGAATGTTTCTTTACCATTTTGGAGTTTCCTGTAGAGTTGGGAGTTAGAAATTTGTATTTTCTCAGGTAGTCATGAATCATGAAGAACCAAAGCAGTTATAAGCCAGGGGTTTTATGATCCCTTTCCGCCATTTGCCCCTCTTGCTTCTCAGCTGTGTATAATGATCATTCATGCTTTTGCTCAGGCT</genome_strand>
        <mrna_strand>TGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTGGGCTTCCTCTCTAATTTTGAGGAGGTCTATAAGTTGGGGGCTTTTGTGGCTAAATTTTTTGACCCGGGTTTTATTAAAGAAGCTGGACTCCCCCCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATTTATCCCCAATAGTGGGGTGAAAATTTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTTTGAGTTGTATTTTTTTGGCCCCTCTGTTTTTTCGATGCATGGGGGAGAAATTTTTTTATTCTTGTCTTAAATTGCTTGAATGTTTTTTTACCATTTTGGAGTTTCCTGTAGAGTTGGGAGTTAGAAATTTGTATTTTTTCAGGTAGTCATGAATCATGAAGAACCAAAGCAGTTATAAGCCAGGGGTTTTATGATCCCTTTCCGCCATTTGCCCCTCTTGTTTTTCAGCTGTGTATAAAGATCATTCATGCTTTTGCTCGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307270" ref_strand="+" ref_description="SGN-E307270 [cLEY-12-E4]">
      <seq>gatgacactaccctttgcaaacccatggagaatggcaagtatgatggtagaagtgggtttgtgagagtcgaagttgttactgcttcacttggcttcctctctaattttgatgatgtctataagttgtgggcttttgtggctaaatttcttgaccctggttttattaaagaagctggactcccacctgttgcagaagacgtcgagtcatgaagctactaaatgaaggctgaattggtagctgtttgctcctaatataagatgcaggaatctatcaccaatagtggggtgaaaatctgatgaaagttgccagacaaacaatgaaaaggtctgagttgtattcttttggcccctctgtttcttcgatgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="70982" stop="70013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70682" g_stop="70313" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E307270" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70682" e_stop="70313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATGC</genome_strand>
        <mrna_strand>GATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCCAGACAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704154" ref_strand="+" ref_description="SGN-E704154 [FA23CA04]">
      <seq>gtatccttcagcatggaagacaaccgcaaagcccgtatgagtcatacacttgagcctggggaaatgttagcaacaagtttggatgatgaagagttcattagcgatggcgattatgatgatggacaagattcagacaggagagagcccgagatagcatgcaggcatcttgatcacattaacatgttgggtctcaataaaactactctacggctaagatatctcgtcaattggctagttacctcattgcttcagataagatttcctggttcaaatggagaagacagttcacgacttgttcgcatctatggtccgaaaatcaaatatgagaggggcgcagctgttgcattcaacgtgcgagacagaaacaggggtcttgttagtcctgaaatagttcagagactggctgagtcacatggtatctctcttggcattggtattctaagtcacatacgaatcttagataacccaaaacagcagcaacggtctctgagtcttgatgacactaccctttgcaaacccatggagaatggcaagtatgatggtagaagtgggtttgtgagagtcgaagttgttactgcttcacttggcttcctctctaattttgatgatgtctataagttgtgggcttttgtggctaaatttcttgaccctggttttattaaagaagctggactcccacctgttgcagaagacgtcgagtcatgaagctactaaatgaaggctgaattggtagctgtttgctcctaatataagatgcaggaatctatcaccaatagtggggtgaaaatctgatgaaagttgcaagagaaacaatgaaaaggtctgagttgtattcttttggcccctctgtttcttccatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="71477" stop="70014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71177" g_stop="70314" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E704154" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71177" e_stop="70314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCCTTCAGCATGGAAGACAACCGCAAAGCCCGTATGAGTCATACACTTGAGCCTGGGGAAATGTTAGCAACAAGTTTGGATGATGAAGAGTTCATTAGCGATGGCGATTATGATGATGGACAAGATTCAGACAGGAGAGAGCCCGAGATAGCATGCAGGCATCTTGATCACATTAACATGTTGGGTCTCAATAAAACTACTCTACGGCTAAGATATCTCGTCAATTGGCTAGTTACCTCATTGCTTCAGATAAGATTTCCTGGTTCAAATGGAGAAGACAGTTCACGACTTGTTCGCATCTATGGTCCGAAAATCAAATATGAGAGGGGCGCAGCTGTTGCATTCAACGTGCGAGACAGAAACAGGGGTCTTGTTAGTCCTGAAATAGTTCAGAGACTGGCTGAGTCACATGGTATCTCTCTTGGCATTGGTATTCTAAGTCACATACGAATCTTAGATAACCCAAAACAGCAGCAACGGTCTCTGAGTCTTGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATG</genome_strand>
        <mrna_strand>GTATCCTTCAGCATGGAAGACAACCGCAAAGCCCGTATGAGTCATACACTTGAGCCTGGGGAAATGTTAGCAACAAGTTTGGATGATGAAGAGTTCATTAGCGATGGCGATTATGATGATGGACAAGATTCAGACAGGAGAGAGCCCGAGATAGCATGCAGGCATCTTGATCACATTAACATGTTGGGTCTCAATAAAACTACTCTACGGCTAAGATATCTCGTCAATTGGCTAGTTACCTCATTGCTTCAGATAAGATTTCCTGGTTCAAATGGAGAAGACAGTTCACGACTTGTTCGCATCTATGGTCCGAAAATCAAATATGAGAGGGGCGCAGCTGTTGCATTCAACGTGCGAGACAGAAACAGGGGTCTTGTTAGTCCTGAAATAGTTCAGAGACTGGCTGAGTCACATGGTATCTCTCTTGGCATTGGTATTCTAAGTCACATACGAATCTTAGATAACCCAAAACAGCAGCAACGGTCTCTGAGTCTTGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCCATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600002" ref_strand="+" ref_description="SGN-E600002 [53003]">
      <seq>caggagagagcccgagatagcatgcaggcatcttgatcacattaacatgttgggtctcaataaaactactctccggctaagatatctcgtcaattggctagttacctcattgcttcagataagatttcctggttcaaatggggaagacagttcacgacttgttcgcatctatggtccgaaaatcaaatatgaaaggggcgcagctgttgcatttaatgtgcgagacagaaacaggggtcttgttagtcctgagatagttcagagactggctgagtcacatggtatttctctgggcattggtatcctaagtcacatacggatcttagataacccaaaacagcagcaacggtctctgagtcttgatgacactaccctttgcaaaccaatggagaatggcaagtatgatggtagaagtgggtttgtgagagtcgaagttgttactgcttcacttggcttcctctctaattttgatgatgtctataagttgtgggcttttgtggctaaatttcttgaccctggttttataaagaagctggactcccgcctgttgcagaagacgtcgagtcatgaagctactaacgggacaagctgaattcagtagctgtttgctcctattacaaggatgcaggaatctatcagccaacagtggggttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="71343" stop="70091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71043" g_stop="70391" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E600002" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71043" e_stop="70391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGAGAGCCCGAGATAGCATGCAGGCATCTTGATCACATTAACATGTTGGGTCTCAATAAAACTACTCTACGGCTAAGATATCTCGTCAATTGGCTAGTTACCTCATTGCTTCAGATAAGATTTCCTGGTTCAAATGGAGAAGACAGTTCACGACTTGTTCGCATCTATGGTCCGAAAATCAAATATGAGAGGGGCGCAGCTGTTGCATTCAACGTGCGAGACAGAAACAGGGGTCTTGTTAGTCCTGAAATAGTTCAGAGACTGGCTGAGTCACATGGTATCTCTCTTGGCATTGGTATTCTAAGTCACATACGAATCTTAGATAACCCAAAACAGCAGCAACGGTCTCTGAGTCTTGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAA-ATGA-AGGCTGAATT-GGTAGCTGTTTGCTCCTAATATAA-GATGCAGGAATCTATCA-CCAATAGTGGGGTGAAAA</genome_strand>
        <mrna_strand>CAGGAGAGAGCCCGAGATAGCATGCAGGCATCTTGATCACATTAACATGTTGGGTCTCAATAAAACTACTCTCCGGCTAAGATATCTCGTCAATTGGCTAGTTACCTCATTGCTTCAGATAAGATTTCCTGGTTCAAATGGGGAAGACAGTTCACGACTTGTTCGCATCTATGGTCCGAAAATCAAATATGAAAGGGGCGCAGCTGTTGCATTTAATGTGCGAGACAGAAACAGGGGTCTTGTTAGTCCTGAGATAGTTCAGAGACTGGCTGAGTCACATGGTATTTCTCTGGGCATTGGTATCCTAAGTCACATACGGATCTTAGATAACCCAAAACAGCAGCAACGGTCTCTGAGTCTTGATGACACTACCCTTTGCAAACCAATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTA-TAAAGAAGCTGGACTCCCGCCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAACGGGACAAGCTGAATTCAGTAGCTGTTTGCTCCTATTACAAGGATGCAGGAATCTATCAGCCAACAGTGGGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204992" ref_strand="+" ref_description="SGN-E204992 [cLEC-16-M20]">
      <seq>cagggcgccatgaagacaaccatgtgctctcattcgatgcagctgttcggtcggtgtctcaagaattcgatcacttcaaggagattcctgaagaagaccagtttgataagagaagccctgcttcaagagaattcagagagatcgaggaagaaccagaaaccagcaaacctgctcacacatttgattctggtcttggcaactcaatttcaatttctcagcatcaaacccttgataatggatcagcctctgagatatgtccggagattaaagagagtgctataagaagagaaactgaaggtgagttcaggttattggaaaggagagaaggaaacagatatgcaggtggtagattttttggtatagaagatgctgatcacggaagcaggggaagacgtgtatccttcagcatggaagacaaccgcaaagcccgtatgagtcatacacttgagcctggggaaatgttagcaacaagtttggatgatgaagagttcattagcgatggcgattatgatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="71872" stop="70755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71572" g_stop="71055" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E204992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71572" e_stop="71055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCGCCATGAAGACAACCATGTGCTCTCATTCGATGCAGCTGTTCGGTCGGTGTCTCAAGAATTCGATCACTTCAAGGAGATTCCTGAAGAAGACCAGTTTGATAAGAGAAGCCCTGCTTCAAGAGAATTCAGAGAGATCGAGGAAGAACCAGAAACCAGCAAACCTGCTCACACATTTGATTCTGGTCTTGGCAACTCAATTTCAATTTCTCAGCATCAAACCCTTGATAATGGATCAGCCTCTGAGATATGTCCGGAGATTAAAGAGAGTGCTATAAGAAGAGAAACTGAAGGTGAGTTCAGGTTATTGGAAAGGAGAGAAGGAAACAGATATGCAGGTGGTAGATTTTTTGGTATAGAAGATGCTGATCACGGAAGCAGGGGAAGACGTGTATCCTTCAGCATGGAAGACAACCGCAAAGCCCGTATGAGTCATACACTTGAGCCTGGGGAAATGTTAGCAACAAGTTTGGATGATGAAGAGTTCATTAGCGATGGCGATTATGATGATGGA</genome_strand>
        <mrna_strand>CAGGGCGCCATGAAGACAACCATGTGCTCTCATTCGATGCAGCTGTTCGGTCGGTGTCTCAAGAATTCGATCACTTCAAGGAGATTCCTGAAGAAGACCAGTTTGATAAGAGAAGCCCTGCTTCAAGAGAATTCAGAGAGATCGAGGAAGAACCAGAAACCAGCAAACCTGCTCACACATTTGATTCTGGTCTTGGCAACTCAATTTCAATTTCTCAGCATCAAACCCTTGATAATGGATCAGCCTCTGAGATATGTCCGGAGATTAAAGAGAGTGCTATAAGAAGAGAAACTGAAGGTGAGTTCAGGTTATTGGAAAGGAGAGAAGGAAACAGATATGCAGGTGGTAGATTTTTTGGTATAGAAGATGCTGATCACGGAAGCAGGGGAAGACGTGTATCCTTCAGCATGGAAGACAACCGCAAAGCCCGTATGAGTCATACACTTGAGCCTGGGGAAATGTTAGCAACAAGTTTGGATGATGAAGAGTTCATTAGCGATGGCGATTATGATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700976" ref_strand="+" ref_description="SGN-E700976 [FA14CG06]">
      <seq>gtgaaaattactcctgttttccccttgtatttgagtgattcaattgatggtttccccggtttgaccgaggacgatgaagccggagagaacagtgaagttaatgctgaaactcggccagggtctcagttgccagccttttctggtgcattcacttctgctcaggtaagggatgtatttgagacagaaatggagcatgacaatagctctgatagggatggagctagcacaatatttgaagagactgaaagcatttctattggagaggtcatgagaagtccagtctttagcgaagatgaatcatctgataactccctctggattgacttgggtcagagtcctttgggttctgatggtgctgggcagtctaacaaacaaaagattgcctctccagcacccccattttggtttgctggcaggaagaacaataaaaggctctctcccaagccttcaaagatgtcaagcagcccattgtatgacagagagttgaatccagggcgccatgaagacaaccatgtgctctcattcgatgcagctgttcggtcggtgtctcaagaattcgatcacttcaaggagattcctgaagaagaccagtttgataagagaagccctgcttcaagagaattcagagagatcgaggaagaaccagaaaccagcaaacctgctcacacatttgattctggtcttggcaactcaatttcaatttctcagcatcaaacccttgataatggatcagcctctgagatatgtccggagattaaagagagtgctataagaagagaaactgaaggtgagttcaggttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="72362" stop="70958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72062" g_stop="71258" g_length="805"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E700976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72062" e_stop="71258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAATTACTCCTGTTTTCCCCTTGTATTTGAGTGATTCAATTGATGGTTTCCCCGGTTTGACCGAGGACGATGAAGCCGGAGAGAACAGTGAAGTTAATGCTGAAACTCGGCCAGGGTCTCAGTTGCCAGCCTTTTCTGGTGCATTCACTTCTGCTCAGGTAAGGGATGTATTTGAGACAGAAATGGAGCATGACAATAGCTCTGATAGGGATGGAGCTAGCACAATATTTGAAGAGACTGAAAGCATTTCTATTGGAGAGGTCATGAGAAGTCCAGTCTTTAGCGAAGATGAATCATCTGATAACTCCCTCTGGATTGACTTGGGTCAGAGTCCTTTGGGTTCTGATGGTGCTGGGCAGTCTAACAAACAAAAGATTGCCTCTCCAGCACCCCCATTTTGGTTTGCTGGCAGGAAGAACAATAAAAGGCTCTCTCCCAAGCCTTCAAAGATGTCAAGCAGCCCATTGTATGACAGAGAGTTGAATCCAGGGCGCCATGAAGACAACCATGTGCTCTCATTCGATGCAGCTGTTCGGTCGGTGTCTCAAGAATTCGATCACTTCAAGGAGATTCCTGAAGAAGACCAGTTTGATAAGAGAAGCCCTGCTTCAAGAGAATTCAGAGAGATCGAGGAAGAACCAGAAACCAGCAAACCTGCTCACACATTTGATTCTGGTCTTGGCAACTCAATTTCAATTTCTCAGCATCAAACCCTTGATAATGGATCAGCCTCTGAGATATGTCCGGAGATTAAAGAGAGTGCTATAAGAAGAGAAACTGAAGGTGAGTTCAGGTTATTGG</genome_strand>
        <mrna_strand>GTGAAAATTACTCCTGTTTTCCCCTTGTATTTGAGTGATTCAATTGATGGTTTCCCCGGTTTGACCGAGGACGATGAAGCCGGAGAGAACAGTGAAGTTAATGCTGAAACTCGGCCAGGGTCTCAGTTGCCAGCCTTTTCTGGTGCATTCACTTCTGCTCAGGTAAGGGATGTATTTGAGACAGAAATGGAGCATGACAATAGCTCTGATAGGGATGGAGCTAGCACAATATTTGAAGAGACTGAAAGCATTTCTATTGGAGAGGTCATGAGAAGTCCAGTCTTTAGCGAAGATGAATCATCTGATAACTCCCTCTGGATTGACTTGGGTCAGAGTCCTTTGGGTTCTGATGGTGCTGGGCAGTCTAACAAACAAAAGATTGCCTCTCCAGCACCCCCATTTTGGTTTGCTGGCAGGAAGAACAATAAAAGGCTCTCTCCCAAGCCTTCAAAGATGTCAAGCAGCCCATTGTATGACAGAGAGTTGAATCCAGGGCGCCATGAAGACAACCATGTGCTCTCATTCGATGCAGCTGTTCGGTCGGTGTCTCAAGAATTCGATCACTTCAAGGAGATTCCTGAAGAAGACCAGTTTGATAAGAGAAGCCCTGCTTCAAGAGAATTCAGAGAGATCGAGGAAGAACCAGAAACCAGCAAACCTGCTCACACATTTGATTCTGGTCTTGGCAACTCAATTTCAATTTCTCAGCATCAAACCCTTGATAATGGATCAGCCTCTGAGATATGTCCGGAGATTAAAGAGAGTGCTATAAGAAGAGAAACTGAAGGTGAGTTCAGGTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703671" ref_strand="+" ref_description="SGN-E703671 [FA22AF01]">
      <seq>ttctaacaaaaagaggagaaagaaggatgcagctactggtctctttgtttttccagtccaatctagggttactggtgcaaagtactcctaccagtggatggcactggcacagcagaataattggcatgtgttgcttgatgccggtgctctgggtccaaaagatatggattcccttggattgtctttatttcgtccggactttataattacttcattctacagggtgttcggttatgacccaactggatttggatgtcttcttatcaagaaatctgtgatggcaagccttcaaaatcagtctgggcatgctgggtctggtatagtgaaaattactcctgttttccccttgtatttgagtgattcaattgatggtttccccggtttgaccgaggacgatgaagccggagagaacagtgaagttaatgctgaaactcggccagggtctcagttgccagccttttctggtgcattcacttctgctcaggtaagggatgtatttgagacagaaatggagcatgacaatagctctgatagggatggagctagcacaatatttgaagagactgaaagcatttctattggagaggtcatgagaagtccagtctttagcgaagatgaatcatctgataactccctctggattgacttgggtcagagtcctttgggttctgatggtgctgggcagtctaacaaacaaaagattgcctctccagcacccccattttggtttgctggcaggaagaacaataaaggctctctcccaagccttcaaagatgtncagcagcccattgtatgacagagagttgaatccagggcgccatgaagacaaccatgtgctctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="72684" stop="71241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72384" g_stop="71541" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E703671" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72384" e_stop="71541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAACAAAAAGAGGAGAAAGAAGGATGCAGCTACTGGTCTCTTTGTTTTTCCAGTCCAATCTAGGGTTACTGGTGCAAAGTACTCCTACCAGTGGATGGCACTGGCACAGCAGAATAATTGGCATGTGTTGCTTGATGCCGGTGCTCTGGGTCCAAAAGATATGGATTCCCTTGGATTGTCTTTATTTCGTCCGGACTTTATAATTACTTCATTCTACAGGGTGTTCGGTTATGACCCAACTGGATTTGGATGTCTTCTTATCAAGAAATCTGTGATGGCAAGCCTTCAAAATCAGTCTGGGCATGCTGGGTCTGGTATAGTGAAAATTACTCCTGTTTTCCCCTTGTATTTGAGTGATTCAATTGATGGTTTCCCCGGTTTGACCGAGGACGATGAAGCCGGAGAGAACAGTGAAGTTAATGCTGAAACTCGGCCAGGGTCTCAGTTGCCAGCCTTTTCTGGTGCATTCACTTCTGCTCAGGTAAGGGATGTATTTGAGACAGAAATGGAGCATGACAATAGCTCTGATAGGGATGGAGCTAGCACAATATTTGAAGAGACTGAAAGCATTTCTATTGGAGAGGTCATGAGAAGTCCAGTCTTTAGCGAAGATGAATCATCTGATAACTCCCTCTGGATTGACTTGGGTCAGAGTCCTTTGGGTTCTGATGGTGCTGGGCAGTCTAACAAACAAAAGATTGCCTCTCCAGCACCCCCATTTTGGTTTGCTGGCAGGAAGAACAATAAAAGGCTCTCTCCCAAGCCTTCAAAGATGTCAAGCAGCCCATTGTATGACAGAGAGTTGAATCCAGGGCGCCATGAAGACAACCATGTGCTCTCA</genome_strand>
        <mrna_strand>TTCTAACAAAAAGAGGAGAAAGAAGGATGCAGCTACTGGTCTCTTTGTTTTTCCAGTCCAATCTAGGGTTACTGGTGCAAAGTACTCCTACCAGTGGATGGCACTGGCACAGCAGAATAATTGGCATGTGTTGCTTGATGCCGGTGCTCTGGGTCCAAAAGATATGGATTCCCTTGGATTGTCTTTATTTCGTCCGGACTTTATAATTACTTCATTCTACAGGGTGTTCGGTTATGACCCAACTGGATTTGGATGTCTTCTTATCAAGAAATCTGTGATGGCAAGCCTTCAAAATCAGTCTGGGCATGCTGGGTCTGGTATAGTGAAAATTACTCCTGTTTTCCCCTTGTATTTGAGTGATTCAATTGATGGTTTCCCCGGTTTGACCGAGGACGATGAAGCCGGAGAGAACAGTGAAGTTAATGCTGAAACTCGGCCAGGGTCTCAGTTGCCAGCCTTTTCTGGTGCATTCACTTCTGCTCAGGTAAGGGATGTATTTGAGACAGAAATGGAGCATGACAATAGCTCTGATAGGGATGGAGCTAGCACAATATTTGAAGAGACTGAAAGCATTTCTATTGGAGAGGTCATGAGAAGTCCAGTCTTTAGCGAAGATGAATCATCTGATAACTCCCTCTGGATTGACTTGGGTCAGAGTCCTTTGGGTTCTGATGGTGCTGGGCAGTCTAACAAACAAAAGATTGCCTCTCCAGCACCCCCATTTTGGTTTGCTGGCAGGAAGAACAAT-AAAGGCTCTCTCCCAAGCCTTCAAAGATGTNCAGCAGCCCATTGTATGACAGAGAGTTGAATCCAGGGCGCCATGAAGACAACCATGTGCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578093" ref_strand="+" ref_description="SGN-E578093 [LE08EA04]">
      <seq>ataatgtatcattgtctcttcacgatgcactccctttctgtattactaaattaattacaagttttgatactgaagggcaaacaaaaaaaggtcactaattaatatctaataaattaattaaattccataatgaattggatttttttcattttgtcaggtcatggtagcttcgaatcaaagtatttatatatttaaatatctataaataaatcatcttttacaaacccacaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="80773" stop="81611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81073" g_stop="81311" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E578093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81073" e_stop="81311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGTATCATTGTCTCTTCACGATGCACTCCCTTTCTGTATTACTAAATTAATTACAAGTTTTGATACTGAAGGGCAAACAAAAAAAGGTCACTAATTAATATCTAATAAATTAATTAAATTCCATAATGAATTGGATTTTTTTCATTTTGTCAGGTCATGGTAGCTTCGAATCAAAGTATTTATATATTTAAATATCTATAAATAAATCATCTTTTACAAACCCACAAAAAAAATA</genome_strand>
        <mrna_strand>ATAATGTATCATTGTCTCTTCACGATGCACTCCCTTTCTGTATTACTAAATTAATTACAAGTTTTGATACTGAAGGGCAAACAAAAAAAGGTCACTAATTAATATCTAATAAATTAATTAAATTCCATAATGAATTGGATTTTTTTCATTTTGTCAGGTCATGGTAGCTTCGAATCAAAGTATTTATATATTTAAATATCTATAAATAAATCATCTTTTACAAACCCACAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229555" ref_strand="+" ref_description="SGN-E229555 [cLEL-4-C1](-)">
      <seq>gtacacccgtgcttactgaattgaatgatgtcttcaaaggcgagtcacagcttagtgatgaatttgacattggaaaaacgcaatcaaaagaagaaaaagaggacagcatttgtgtcttggattacaaaaactgtgatgaggttgcaccacaagtaagttcaaagtcgaagaagaagccttgtcgagctgctgccacacatgtctttgatactattgctggaagactaaggcagacacgtggaagaagccatctggaagcataacatctcgagtaacaaaatagcgggatggtcttttgcacccgaaacaggttcctacgtttaatggttaagcttatttgctgtgaacaaaggtctaggtgactggtggtttttgctaaatgtaatatatataacctgtttaagggtgtctttttgcgaacctttttaactaaagttaactgaagtggtccgatatgaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="83447" stop="4062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83147" g_stop="82688" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82687" i_stop="82634" i_length="54">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82633" g_stop="82621" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="473" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E229555" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83147" e_stop="82688"/>
          <exon e_start="82633" e_stop="82621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACCCGTGCTTACTGAATTGAATGATGTCTTCAAAGGCGAGTCACAGCTTAGTGATGAATTTGACATTGGAAAAACGCAATCAAAAGAAGAAAAAGAGGACAGCATTTGTGTCTTGGATGACAAAAACTGTGATGAGGTTGCACCAGAAGTAAGTTCAAAGTCGAAGAAGAAGCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGAGACGTGGAAGAAGCAATCTGGAAGCATAACATCTCGAGTAACAAAATAGCGGGATGGTCTTTTGCACCCGAAACAGGTTACGACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCAAAACTTTTTAACTAAAGTTAACTGAAGTGATCCAATATGAAATCTGCTTCTGAGGTTAGTCAAATAACTACTACTCTTCTAACAGAACTTTTGCAGTTGATAGAAAACT</genome_strand>
        <mrna_strand>GTACACCCGTGCTTACTGAATTGAATGATGTCTTCAAAGGCGAGTCACAGCTTAGTGATGAATTTGACATTGGAAAAACGCAATCAAAAGAAGAAAAAGAGGACAGCATTTGTGTCTTGGATTACAAAAACTGTGATGAGGTTGCACCACAAGTAAGTTCAAAGTCGAAGAAGAAGCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGACACGTGGAAGAAGCCATCTGGAAGCATAACATCTCGAGTAACAAAATAGCGGGATGGTCTTTTGCACCCGAAACAGGTTCCTACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCGAACCTTTTTAACTAAAGTTAACTGAAGTGGTCCGATATGAAA......................................................AAAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232201" ref_strand="+" ref_description="SGN-E232201 [cLEL-5-P6](-)">
      <seq>ttgcaccaatagtaagttcaaagtcgaagaaaaagccttgtcgagctgctgccacacatgtctttgatactattgctggaagactaaggcagagacgtggaagaagcaatctggaagcataacatctcgagtaacaaaatagcgggatggtcttttgcacccgaaacaggttacaacgtttaatggttaagcttatttgctgtgaacaaaggtctaggtgactggtggtttttgctaaatgtaatatatataacctgtttaagggtgtctttttgcaaaactttttaacccaagttaactgaagtgatcccatatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="83306" stop="82388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83006" g_stop="82689" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="336"/>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E232201" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83006" e_stop="82689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCAGAAGTAAGTTCAAAGTCGAAGAAGAAGCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGAGACGTGGAAGAAGCAATCTGGAAGCATAACATCTCGAGTAACAAAATAGCGGGATGGTCTTTTGCACCCGAAACAGGTTACGACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCAAAACTTTTTAACTAAAGTTAACTGAAGTGATCCAATATGAA</genome_strand>
        <mrna_strand>TTGCACCAATAGTAAGTTCAAAGTCGAAGAAAAAGCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGAGACGTGGAAGAAGCAATCTGGAAGCATAACATCTCGAGTAACAAAATAGCGGGATGGTCTTTTGCACCCGAAACAGGTTACAACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCAAAACTTTTTAACCCAAGTTAACTGAAGTGATCCCATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232701" ref_strand="+" ref_description="SGN-E232701 [cLEL-5-P6](-)">
      <seq>tttgcacccgaaacaggttacgacgtttaatggttaagcttatttgctgtgaacaaaggtctaggtgactggtggtttttgctaaatgtaatatatataacctgtttaagggtgtctttttgcaaaactttttaactaaagttaactgaagtgatcccatatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="83153" stop="82388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82853" g_stop="82689" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="166" polyA_stop="183"/>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E232701" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82853" e_stop="82689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCACCCGAAACAGGTTACGACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCAAAACTTTTTAACTAAAGTTAACTGAAGTGATCCAATATGAA</genome_strand>
        <mrna_strand>TTTGCACCCGAAACAGGTTACGACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCAAAACTTTTTAACTAAAGTTAACTGAAGTGATCCCATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333966" ref_strand="+" ref_description="SGN-E333966 [cTOD-24-P9]">
      <seq>gattgctagactgggttataagtcagtcgcacattatctaattcaaacccatcgagctactgtcagtaccgagaataacttgacaccattctctgcaaaaagatcactacctttctcagatatggaaggtacaagaaaagatgagggactctgtgaggtgaaaccagtggcgtatgtggcgtatgatgctaatgaacccaatttagctccagaaagtagtacagagcctttgctgctgaaaccttatcctgaaaacagtggtacagatcttgttctctcaggcgacaatgtgggaaacttctcaacagacaacaaatcaggaaatgcaaatgctgtgctggtggtaggtagctcattgacttctcaaacagagatgaaaccagtggactatgatggccatgagcccaacttagcaccggaaagtagcacagtgcccttgctgaagtccatcgttgaacccttgttgctactgaaacatgactccgaaaacagtgcaggaaatatctcagtagccaacaaatcaggaaatgaaaatgtcgtgctggtgggcaactcactgacttctcaaacagaggtgaaaccaaccttattaccagaaagtagcacagagcccttgctgaagtccattgctgaacccttgttactactgaaacatgactctgaaaacagtggtaaaaatcttgtgctctcatgtgataatgcaggaaacttctcagcagacaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="84220" stop="82893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83920" g_stop="83193" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E333966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83920" e_stop="83193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCTAGACTGGGTTATAAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAACTTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAAGATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCCAATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAACCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCTACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTACTACTGAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAATGCAGGAAACTTCTCAGCAGACAACAAAT</genome_strand>
        <mrna_strand>GATTGCTAGACTGGGTTATAAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAACTTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAAGATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCCAATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAACCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCTACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTACTACTGAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAATGCAGGAAACTTCTCAGCAGACAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334012" ref_strand="+" ref_description="SGN-E334012 [cTOD-24-O9]">
      <seq>gattgctagactgggttataagtcagtcgcacattatctaattcaaacccatcgagctactgtcagtaccgagaataacttgacaccattctctgcaaaaagatcactacctttctcagatatggaaggtacaagaaaagatgagggactctgtgaggtgaaaccagtggcgtatgtggcgtatgatgctaatgaacccaatttagctccagaaagtagtacagagcctttgctgctgaaaccttatcctgaaaacagtggtacagatcttgttctctcaggcgacaatgtgggaaacttctcaacagacaacaaatcaggaaatgcaaatgctgtgctggtggtaggtagctcattgacttctcaaacagagatgaaaccagtggactatgatggccatgagcccaacttagcaccggaaagtagcacagtgcccttgctgaagtccatcgttgaacccttgttgctactgaaacatgactccgaaaacagtgcaggaaatatctcagtagccaacaaatcaggaaatgaaaatgtcgtgctggtgggcaactcactgacttctcaaacagaggtgaaaccaaccttattaccagaaagtagcacagagcccttgctgaaagtcattgctgaacccttgntactactgaaacatgactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="84220" stop="82960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83920" g_stop="83260" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E334012" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83920" e_stop="83260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCTAGACTGGGTTATAAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAACTTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAAGATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCCAATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAACCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCTACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTACTACTGAAACATGACTCT</genome_strand>
        <mrna_strand>GATTGCTAGACTGGGTTATAAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAACTTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAAGATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCCAATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAACCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCTACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAAGTCATTGCTGAACCCTTGNTACTACTGAAACATGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449229" ref_strand="+" ref_description="SGN-E449229 [cSTS-5-F22]">
      <seq>acatttttgaccgttggggtttttacagagaagaagaagaagaagcgggaaaatgggtgctcgtgggaggaaaagagctgctccggtgaacatcgacgatgtcgccggcaatacccaggaaaaatctgagtacgaacagttgagggaaaaaagaatcaaggaaaatcttgagaggatgcaaaagttggggatttttgacatatcactcaaactcaagcctgttaggacacccatcgttcgcaaaacccctcagcgtctctctcctgtgcagcgttctggacccacgcgccggtcctccaggctgcagagtgcgacaccaatcagctattcagaggtgcatccgtcgaagattgataactccttggatggtaagcatcatttgttgagggaggaaggggcaaagccagagatttacacggaagaacatgagaaattgttgggtaccactgatttgagctggacattttttgtggatggatatggaaatgatgggaagagaatctatgatccagtcaaaggaaaaacttgtcatcagtgccgacagaaaactcttggtcatcgtactcattgtagcaattgccaaattgttcaaggacaattctgtggagattgcttgtatatgagatacggagaacatgtactcgaagcgaacaagaatccgaactggctttgccctgtttgtcgaggaatatgcaactgcagcttgtgccggcaagcaaaaagttgggctcctactggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="88026" stop="83761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87698" g_stop="87433" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="300" r_length="266" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87432" i_stop="86700" i_length="733">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86699" g_stop="86460" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="540" r_length="240" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86459" i_stop="85103" i_length="1357">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85102" g_stop="85019" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="624" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85018" i_stop="84178" i_length="841">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84177" g_stop="84061" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="741" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E449229" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87698" e_stop="87433"/>
          <exon e_start="86699" e_stop="86460"/>
          <exon e_start="85102" e_stop="85019"/>
          <exon e_start="84177" e_stop="84061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGCTGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAATACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAGGTATACTTTACTGTATTGCCCAAATAGTGTGTCGATTTTTTTAACATTGATGCCGGCACACCCACTATTTGTGTTAAACTATAAATTACTGTGGAATCATCATGCGGATTAATTTCTGTATTTAAGTGGAGAGGGGTAGAATGGGTTTGTTGTTGACTTCCCATATCCGCTGGGGTTGAAGTCTTTGGTCTCCTTAAGTTAGGTTCAAGATTCCATTTGTTGTCATGGTATCAGTGGAAGATCCATCCAACTTATTGTTTACCCGATGTTGGGCCCATCTTATATTGTCCATACTCGTCTTGGTGTGCGAGCTTCATGAGTCAGCTTTTGAGTTTGAGTTATCCGGTATCCTATTATCCATCCGCTCGAAACTTAAAAACAAGAATTTCTGTGTTGTGAAAATGATTTTTTATAGATTAAACATTTTCACTTTCACTTACTTGGATATGTTGTCTCAGAGGTGTAGTGGTAGAGAGGAATAATGTATGTAAATGTACTCAGTATATACTAACTTAGTATGTACTCAGTATATACTAACTTTAGATCCTTATTTTTTTTCTTAAGGTTTACTGGATGTAAGGGTAGCATGTTCAACTATTTGCTCCTAGATTTTCCTTGTCTGCTGACTGTTCTGCAAGATAATATGACCATTCAATACTTGCATACAAATGAGGGAGAACATGGGGATGTGGTAATTTCTAACGCCTTATTCTTGTTTGCTTGGGTATTTTAGGCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATTGATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCATCAGTGCCGGTAAGGAGATATGTTTGTTCTTATTATTTTATGCTTCATGTTAACTGATTTTCATCAACCTGGCTGAGTATAGTACTGGGAACCTAGTAACTTCTGTAAATTCTTGCCTTTTTGATGTACTTTAAGCTGTCTGTTAGTTACACCGGCCCATATTACCCTGGTTGATGGACTTACATCTCATCACCTAGTAACTTCAGTAAATTCTTGCCTTTTGATGTACTTTAAGCTGTCTGTTAGTTACACCGGCCCATATTACCCTGGTTGATGGACCTACATCTCATCACTAGGATAAAACTATTGAGTTTACCCTTGAAAACACAAATGCCTAACTTTTTGTTGTTGTTTAAGTTAATTCTTAGATGCTGCCTATTCTTCATGATTTTGGAGTTAGTTACGTATACAAGTTGAAATTTCACACTATAAAACTATAGAGTTTACGCTTGAAAATACAAATGCCTAACTTTTTTTCGTTGTTTGAGTTAATTCTTAGATGCTGTCTGTTCTGCATGGTTTTGGAGTTAATTACGTAAACAAGTTGAAATTTCACACTATAAAACTATAGAGTTTACCCTTGAAAACACAAATGCCTAACTTTTTTTGTTGTTTAAGTTAATTCTTAGATGCTGCCTATTCTTCATGATATCGTAGTTAATTACGTAAACAAGTTGAAATTTCACATTAGAGAAAATATGAACAATTGGGAAAGCAAACTGGGTAAATGAATTGTGTTGTTAGCTGTCTATGAATTTCCTCAGTTGCTGTCAAATGCCTATTTGTATAGACAACTAAGATAGTATTTGATATCTTTGCAACCTTAGGTGACATTGGCAAAATAATGAAAAATTAGGAGATAATATGAATGGACTTGGAATGATCTATGAGCTCAATCAAATTTATCATTGCTTAATATTGGAAACTATGTAAATCTGTATTTTGAGGGTTACATTATTGGTTTTATTAGCCTGTCTCAATATGGTACTAGTGGAAGTTATTCTATCTGAGCCTTAGATATTTTCAAATAAACATGGAGTCAACAATGCTTTCTCTATTGCGATGAATCAAGTAATACCCTCCCCCATTTCCCCTTCGCCTACCCCCACTTCTTTTAGAAGTAATGTTTGCAACAAATACTTTCTTTGAAGAAGGAACAAAATCATGACATATTTTCCTTTGTTTTTCATTATGTAATGCTACTTAAATGTTGATTTGATTCTCTCTCTATCTTCTCCCCGTGTCACGCACACAGTTTTCCCAGGCAGTCTTATTGCTTTGTTTCTCATGTATGTGATCATTCAATACAATTTCCTCTGGATGAATATATTAAGTTGTCAATGTGGTTCTTCACCTTCTTTTGCAGACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAATTGCCAAATTGTTCAAGGACAATTCTGTGGAGATTGCTTGTATATGAGGTATGCCAGTATGTATATCAAAATTTCAATATCTTCTAATGTTAAGTCTTTTAATGCTCTGAATATGCCAAACTTTTCAAATAAGATACATTTCATTGAGTAATGTATTTTATCTATATATTCATCTATGTCTTTCTGTGCCACTTGATGATGAAACCACTATTTCTATCAGTTGTCTGTATATTTGGTCCTGCTGAGCTTTATCAATCAGCTTTGACGATATGCATTTATTCCTCTCATTTAACCAGTTGTTCTGACATCCTGTCCCCATGCACATATATCTAAGGTTATGAAGTTGTATTTGTTCAAGCCAATAAGATTTATTTCCGCCACCTCCGTATAGGGATTACATGTTTATTTCTTTCTTAAACACACAGCCTTAAGCTTTCTAAGACGGGAGATCAACTTTTACTCTTCATATTCAATTCCCTTGTAATGCAGCTCATTTTGTGCATCTATGCTAAATCCTACTGTGGGCAGCTTTTATTTTCATCTTATGATTAGAAAAAAAAAACGCATCAGATACTGGTTGGAAAATCTCCTTTATACAAAACCTGCAGGATGATGCTTATGTATTCTGATTAGGGTGAACTTCAGAACTTTTAGTTCTTTTATCACGTTGTTCTGGATGTCTCCTACTACAAGATCTGCAGGACGATGTATGTGTATTTGCATTAGAAGGGGATCTTCATAACTTGTTAGTTGTTTTAACATGGTCTGGATATCCCCCTTTACCCTGGAGTAGCAGGAGTGCAACACATGGCGCCAAGTCACATTTCCTCTTTCAATTTGCAAATCTGCAACCTCTTCCTCATTGTGTTATTTATTTTACACGATGCAGATACGGAGAACATGTACTCGAAGCGAACAAGAATCCGAATTGGCTTTGCCCTGTTTGTCGAGGAATATGTAACTGCAGCTTGTGCCGGCAAGCAAAAGGTTGGGCTCCTACTGGTGC</genome_strand>
        <mrna_strand>AGAAGAAGAAGCGGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACATCGACGATGTCGCCGGCAATACCCAGGAAAAATCTGAGTACGAACAGTTGAGGGAAAAAAGAATCAAGGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAGTGCGACACCAATCAGCTATTCAGAGGTGCATCCGTCGAAGATTGATAACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACGGAAGAACATGAGAAATTGTTGGGTACCACTGATTTGAGCTGGACATTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCATCAGTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAATTGCCAAATTGTTCAAGGACAATTCTGTGGAGATTGCTTGTATATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAGAACATGTACTCGAAGCGAACAAGAATCCGAACTGGCTTTGCCCTGTTTGTCGAGGAATATGCAACTGCAGCTTGTGCCGGCAAGCAAAAAGTTGGGCTCCTACTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315471" ref_strand="+" ref_description="SGN-E315471 [cTOA-22-N19]">
      <seq>tcccacaaatacatttttgaccgttggggttttcacagagaagaagaagctggaaaatgggtgctcgtgggaggaaaagagctgctccggtgaacaccgacaatgtcgattgcaatacccagaaaaattcagagtacgaacagttgagggaaaaaagaatcaaagaaaatcttgagaggatgcaaaagttggggatttttgacatatcactcaaactcaagcctgttaggacacccatcgttcgcaaaacccctcagcgtctctctcctgtgcagcgttctggacccacgcgccggtcctccaggctgcagagtgcgacaccagttagctattcagaggtgcatctgtcgaagattgatgactccttggatggtaagcatcatttgttgagggaggaaggggcaaagccagagatttacacggaagaacacgagaaattgttgggttccactgatttgagctggactttttttgtggatggatatggaaatgatgggaagagaatctatgatccaatcaaaggaaaaaattgtcatcagtgccgacagaaaactcttggtcatcgtactcattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="88036" stop="86129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87736" g_stop="87433" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87432" i_stop="86700" i_length="733">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86699" g_stop="86460" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="544" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E315471" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87736" e_stop="87433"/>
          <exon e_start="86699" e_stop="86460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACAAATACATTTTTGACCGTTGGGGTTTTCACAGAGAAGAAGAAGCTGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAATACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAGGTATACTTTACTGTATTGCCCAAATAGTGTGTCGATTTTTTTAACATTGATGCCGGCACACCCACTATTTGTGTTAAACTATAAATTACTGTGGAATCATCATGCGGATTAATTTCTGTATTTAAGTGGAGAGGGGTAGAATGGGTTTGTTGTTGACTTCCCATATCCGCTGGGGTTGAAGTCTTTGGTCTCCTTAAGTTAGGTTCAAGATTCCATTTGTTGTCATGGTATCAGTGGAAGATCCATCCAACTTATTGTTTACCCGATGTTGGGCCCATCTTATATTGTCCATACTCGTCTTGGTGTGCGAGCTTCATGAGTCAGCTTTTGAGTTTGAGTTATCCGGTATCCTATTATCCATCCGCTCGAAACTTAAAAACAAGAATTTCTGTGTTGTGAAAATGATTTTTTATAGATTAAACATTTTCACTTTCACTTACTTGGATATGTTGTCTCAGAGGTGTAGTGGTAGAGAGGAATAATGTATGTAAATGTACTCAGTATATACTAACTTAGTATGTACTCAGTATATACTAACTTTAGATCCTTATTTTTTTTCTTAAGGTTTACTGGATGTAAGGGTAGCATGTTCAACTATTTGCTCCTAGATTTTCCTTGTCTGCTGACTGTTCTGCAAGATAATATGACCATTCAATACTTGCATACAAATGAGGGAGAACATGGGGATGTGGTAATTTCTAACGCCTTATTCTTGTTTGCTTGGGTATTTTAGGCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATTGATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCATCAGTGCCG</genome_strand>
        <mrna_strand>TCCCACAAATACATTTTTGACCGTTGGGGTTTTCACAGAGAAGAAGAAGCTGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAATACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATTGATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAATCAAAGGAAAAAATTGTCATCAGTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437841" ref_strand="+" ref_description="SGN-E437841 [cSTA-5-A8]">
      <seq>aagaagaaaaacaagcgggaaaatgggggctcgtgggaggaaaagagctgctcccgtgaacatcgacgatgtcgccggcgatacccaggaaaaatctgagtacgaacaggtgagggaaaaaagaatcagggaaaatcttgagaggatgcacaagttggggatttttgacatatcactcaaactcaagcctgttaggacacccatcgttcgcaaaacccctcagcgtctctctcctgtgcagcggtctggacccacgcgccggtcctccaggctgcagagtgcgacaccaatcagctattcagaggtgcatccgtcgaagattgataactccttggatggtaagcatcatttgttgagggaggaaggggcaaagccacatatttacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="88000" stop="86282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87759" g_stop="87756" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87755" i_stop="87699" i_length="57">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87698" g_stop="87433" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="270" r_length="266" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87432" i_stop="86700" i_length="733">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86699" g_stop="86582" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="388" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E437841" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87759" e_stop="87756"/>
          <exon e_start="87698" e_stop="87433"/>
          <exon e_start="86699" e_stop="86582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTACGGCTTTTTCTGTATCTCCCACAAATACATTTTTGACCGTTGGGGTTTTCACAGAGAAGAAGAAGCTGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAATACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAGGTATACTTTACTGTATTGCCCAAATAGTGTGTCGATTTTTTTAACATTGATGCCGGCACACCCACTATTTGTGTTAAACTATAAATTACTGTGGAATCATCATGCGGATTAATTTCTGTATTTAAGTGGAGAGGGGTAGAATGGGTTTGTTGTTGACTTCCCATATCCGCTGGGGTTGAAGTCTTTGGTCTCCTTAAGTTAGGTTCAAGATTCCATTTGTTGTCATGGTATCAGTGGAAGATCCATCCAACTTATTGTTTACCCGATGTTGGGCCCATCTTATATTGTCCATACTCGTCTTGGTGTGCGAGCTTCATGAGTCAGCTTTTGAGTTTGAGTTATCCGGTATCCTATTATCCATCCGCTCGAAACTTAAAAACAAGAATTTCTGTGTTGTGAAAATGATTTTTTATAGATTAAACATTTTCACTTTCACTTACTTGGATATGTTGTCTCAGAGGTGTAGTGGTAGAGAGGAATAATGTATGTAAATGTACTCAGTATATACTAACTTAGTATGTACTCAGTATATACTAACTTTAGATCCTTATTTTTTTTCTTAAGGTTTACTGGATGTAAGGGTAGCATGTTCAACTATTTGCTCCTAGATTTTCCTTGTCTGCTGACTGTTCTGCAAGATAATATGACCATTCAATACTTGCATACAAATGAGGGAGAACATGGGGATGTGGTAATTTCTAACGCCTTATTCTTGTTTGCTTGGGTATTTTAGGCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATTGATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACG</genome_strand>
        <mrna_strand>AAGA.........................................................AGAAAAACAAGCGGGAAAATGGGGGCTCGTGGGAGGAAAAGAGCTGCTCCCGTGAACATCGACGATGTCGCCGGCGATACCCAGGAAAAATCTGAGTACGAACAGGTGAGGGAAAAAAGAATCAGGGAAAATCTTGAGAGGATGCACAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGGTCTGGACCCACGCGCCGGTCCTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAGTGCGACACCAATCAGCTATTCAGAGGTGCATCCGTCGAAGATTGATAACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCACATATTTACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608675" ref_strand="+" ref_description="SGN-E608675 [24666]">
      <seq>tcaagtgaagcagctaaccttataattgccaaacaattgttggagggtgaccccaaatatatatctcccatgaatcttaaacaacttcgagacctctaaatgttttttttttcttttctccacacattaatttatcttgtatttgtgtctaattatatatcctttgtttcttttatttacatgattgttttactgtaagaggtttgatcttttgattaattaaatatattgtggaagagaagtgaaggaaagttctctgtcttccaattgttcctcgtttgaataaaaaattggtgttatctcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="94274" stop="95177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94573" g_stop="94861" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="315"/>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E608675" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94573" e_stop="94861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTGAAGCAGCTAACCTTATAATCGCCAAACAATTGTTGGAGGGTGACTCCAAATATATATCTCCCATGAATCTTAAACAACTTCGAGATCTCTAAATGTTTTTGTTTCTTTCTTTTTCTCCGCACATTAATTTATCTTGTATTT-TGTCTAGTTATATATCCTTTTTTTTCTTTTATTTTACATGATTGTTTTACCGTAAAAAGTTTGATCTTTTGATTGTATTAAATATATTGTGGAAGAGAAGTGAAGGAAATTAAAGTTCTCTGTCTTCCAATTGTGTTCCTC</genome_strand>
        <mrna_strand>TCAAGTGAAGCAGCTAACCTTATAATTGCCAAACAATTGTTGGAGGGTGACCCCAAATATATATCTCCCATGAATCTTAAACAACTTCGAGACCTCTAAATG-TTTT-TTT-TTTC-TTTTCTCCACACATTAATTTATCTTGTATTTGTGTCTAATTATATATCC-TTTGTTTCTTTTA-TTTACATGATTGTTTTACTGTAAGAGGTTTGATCTTTTGATT-AATTAAATATATTGTGGAAGAGAAGTGAAGG-----AAAGTTCTCTGTCTTCCAA-T-TGTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280691" ref_strand="+" ref_description="SGN-E280691 [cLEL-6-M4](-)">
      <seq>ttgctgctggcctggcgtttggaatgcagatgattgctgctgcccgggagtttggaatggagacgcctgttgctgtcccggagtttggaatagcgacggctgttgtgcctgtggagtgaaagtgaacgccattggctattgcaatgattcgctcatcgaagatttcgacgacaattgaattagggcaaaactcgaagaaagctcgaaaaaatgtagaaaaagctactcaaacaacttttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="109991" stop="109150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109691" g_stop="109447" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E280691" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109691" e_stop="109447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGCTGGCCTGGCGTTTGGAATGGAGATGATTGCTGCTGCCCGGGAGTTTGGAATGGAGACGCCTGTTGCTGTCCCGGAGTTTGGAATAGCGACGGCTGTTGTGCCTGTGGAGTGAAAGTGAACGCCATTGGCTATTGCAATGATTCGCTCATCGAAGATTTCCACAACAATTGAATTAGGGCAAAAGCCGAAGAAAGCTCGAAAAAATGTAGAAATGGCTACTCAAACAACTTTTCTTTGA</genome_strand>
        <mrna_strand>TTGCTGCTGGCCTGGCGTTTGGAATGCAGATGATTGCTGCTGCCCGGGAGTTTGGAATGGAGACGCCTGTTGCTGTCCCGGAGTTTGGAATAGCGACGGCTGTTGTGCCTGTGGAGTGAAAGTGAACGCCATTGGCTATTGCAATGATTCGCTCATCGAAGATTTCGACGACAATTGAATTAGGGCAAAACTCGAAGAAAGCTCGAAAAAATGTAGAAAAAGCTACTCAAACAACTTTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617228" ref_strand="+" ref_description="SGN-E617228 [90703]">
      <seq>agcaacaacaacttcaatttcagcagcaacagcaacaacaacaacaacaacttcagcaacaacaacaacaacaacttcagcaacaacaacaattgcaattgcagcaacaacaacaacaactgctgcagcaacatcagtcatcacatcagcaacaattgtaccttttcaccaacgataagactcctgccacctacagtaccaaatgggcagacctccacccggactcgcagaagcttctgttgcaaattgaggagaggatactggaatacagggatgaaagccaaaggcttgaccagtgtagccgactttatgattcatcagtgtcaaatgatggttttgagttggatgcaagtcgcagcattcaggaacttggtggaatcagtacatcaatggaaagacaaaaggctatcttgcaagagctaatgattgttgttaaagatatgctgcgcaatacagaggttgcggtgcgctcttttatgatgttatgcccaaggtttcatcatcaaagtgcacctgctgctgcaagcgttactgctccatcacaggcatcaggtgcaactgtagctccaacagcatctggttcagctcagtctacccccaatgcggcaatttttgatttttacagtgggataccaaaaaagccctctccctttttacagcaaactgtagcaagatttgagaaatatcttgtagaatgccgacaatgggttgacagaattggagcagttgatggccttagattctgacaggaattctatgaactccagttcatctttgttgcagtctcttccaaaagtcatgtcaaatgtgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="101784" stop="111715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109753" g_stop="110002" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.836"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110003" i_stop="110112" i_length="110">
            <donor d_prob="0.797" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110113" g_stop="110227" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="365" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110228" i_stop="110967" i_length="740">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110968" g_stop="111415" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="814" r_length="449" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E617228" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109753" e_stop="110002"/>
          <exon e_start="110113" e_stop="110227"/>
          <exon e_start="110968" e_stop="111415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCAACCACAACAGCAACAACAACAACTTCAATTTCAGCAGCAGCAACAACAACTTCAGCAACAGCAACAACTGCAATTGCAGCAACAACTGCAATTGCAGCAACAACAACAGCAACTGCTGCAGCAACAACAGTCATCACAGCAGCAACAATTGTACCTTTTCACCAACGATAAGACTCCTGCCACCTATAGTACCAAATGGACAGACCTCCACCCGGACTCGCAGAAGCTTCTGTTGCAAATTGAGTAGGTTAATTTCATAGAGTAAACATGTTTGAAGTTGTTTAGTTTCCTATTCTCGTTTTTTATTGGTTAGAGAAGTTCCTTAATTGTTATTTCTGTGCTTGTGGATGTAGGGAGAGGATACTGGAATATAGGGATGAAAGCCAAAGGCTTGACCAGTGTAGCCGACTTTATGATTCATCAGTGTCAAATGATGGTTTTGAGTTGGATGCAAGCCGCAGCATTCAGGTTGTATCTTATGATTCTTCTGTATTTCAATCACTATTACACCTCTAGAATGTAAATCATCAGTAAAATTATCGGATCAATTACCAAAAAGTAAGGTTGTTTTTCATCTTGAATCATCTGCTGGATTAACTTGATTTCTTCTGTACTGGATTTATAGTCACTTTCAAATTCACAAGAATGAATATGCTAATGTAGTCAGCACACAGATTTAGAATTGTTACCATACAATAAATTAGTTGCATTCTGGTTTGTAGAAGTGTTTTTTCGTGGGAAAATAATAGAAGAAGTGTACAAAAATCAGGGTCTTTCTACCAATGTCATTATTTTTGGGAAAGCTGTTTTTTTTAATGACAAGGGAAACCCGCAGCCGCTACTTTTTGTGTGTGCACATGGTAAACCCCTCGCTCCTATGCAATAGCTCGCAAAGCTGATTTATTCTTCTAGCATGTATTCTATGTATGGTTACATTCCTTGTGTCTATTTGTGCTTAGCACGGACTGGAGGTATTGTCTAGAGCTGTTGTTTGCGTTAGTTGGATTTTCATATCATTTAACAATGCTCGTCATATTTCTGTTGTTCAGAGTGAAGGTTCCTGCATTTCTTTTTCTGATAGAGGATAATATTTGCCACTGATAGTAACACTTTGGAGTGAACAAGTTCTCCTGCTTTCCTCTCTAATTAATATTTCTAACCTCCATGTTTACTTTGTTTCATGTGCTAATGTTTAGTTGCTTTTTCAGGAACTTGGTGGAATTAGTACATCAATGGAAAGACAAAAGGCTATCTTGCAAGAGCTAATGATTGTTGTTAAAGATATGCTGCGCAATACAGAGGTTGCAGTGCGCTCTTTTATGATGTTACGCCCAAAATTTCTTCATCAAAGTGCACCTGCTACTGCAAGCGCTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGCAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTGCAGCAAACCGTAGCAAGATTTGAGAAATATCTTGTAGAATGCCGACAATGGGTTGA-AGAATTGGAGCAGTTGATGGCCTTAGATTCTGACAGGAATTCTATGAACTCCAATTCATCTCTGTTGCAGTCTCTTCCAAATGTCATGTCGAATGTGCATG</genome_strand>
        <mrna_strand>AGCAACAACAACTTCAATTTCAGCAGCAACAGCAACAACAACAACAACAACTTCAGCAACAACAACAACAACAACTTCAGCAACAACAACAATTGCAATTGCAGCAACAACAACAACAACTGCTGCAGCAACATCAGTCATCACATCAGCAACAATTGTACCTTTTCACCAACGATAAGACTCCTGCCACCTACAGTACCAAATGGGCAGACCTCCACCCGGACTCGCAGAAGCTTCTGTTGCAAATTGA..............................................................................................................GGAGAGGATACTGGAATACAGGGATGAAAGCCAAAGGCTTGACCAGTGTAGCCGACTTTATGATTCATCAGTGTCAAATGATGGTTTTGAGTTGGATGCAAGTCGCAGCATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGTGGAATCAGTACATCAATGGAAAGACAAAAGGCTATCTTGCAAGAGCTAATGATTGTTGTTAAAGATATGCTGCGCAATACAGAGGTTGCGGTGCGCTCTTTTATGATGTTATGCCCAAGGTTTCATCATCAAAGTGCACCTGCTGCTGCAAGCGTTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGCAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTACAGCAAACTGTAGCAAGATTTGAGAAATATCTTGTAGAATGCCGACAATGGGTTGACAGAATTGGAGCAGTTGATGGCCTTAGATTCTGACAGGAATTCTATGAACTCCAGTTCATCTTTGTTGCAGTCTCTTCCAAAAGTCATGTCAAATGTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298136" ref_strand="+" ref_description="SGN-E298136 [cLEW-9-K11]">
      <seq>ttttgagttggatgcaagccgcagcattcaggaacttggtggaattagtacatcaatggaaagacaaaaggctatcttgcaagagctaatgattgttgttaaagatatgctgcgcaatacagaggttgcagtgcgctcttttatgatgttacgcccaaaatttcttcatcaaagtgcacctgctactgcaagcgctactgctccatcacaggcatcaggtgcaactgtagctccaacagcatctggttcagctcagtctacccccaatgcggtaatttttgatttttacagtgggataccaaaaaagccctctccctttttgcagcaaaccgtagcaagatttgagaaatatcttgtcgaatgccgacaatgggttgaagaattggagcagttgatggccttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="109897" stop="111640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110197" g_stop="110227" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110228" i_stop="110967" i_length="740">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110968" g_stop="111340" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="404" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E298136" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110197" e_stop="110227"/>
          <exon e_start="110968" e_stop="111340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGTTGGATGCAAGCCGCAGCATTCAGGTTGTATCTTATGATTCTTCTGTATTTCAATCACTATTACACCTCTAGAATGTAAATCATCAGTAAAATTATCGGATCAATTACCAAAAAGTAAGGTTGTTTTTCATCTTGAATCATCTGCTGGATTAACTTGATTTCTTCTGTACTGGATTTATAGTCACTTTCAAATTCACAAGAATGAATATGCTAATGTAGTCAGCACACAGATTTAGAATTGTTACCATACAATAAATTAGTTGCATTCTGGTTTGTAGAAGTGTTTTTTCGTGGGAAAATAATAGAAGAAGTGTACAAAAATCAGGGTCTTTCTACCAATGTCATTATTTTTGGGAAAGCTGTTTTTTTTAATGACAAGGGAAACCCGCAGCCGCTACTTTTTGTGTGTGCACATGGTAAACCCCTCGCTCCTATGCAATAGCTCGCAAAGCTGATTTATTCTTCTAGCATGTATTCTATGTATGGTTACATTCCTTGTGTCTATTTGTGCTTAGCACGGACTGGAGGTATTGTCTAGAGCTGTTGTTTGCGTTAGTTGGATTTTCATATCATTTAACAATGCTCGTCATATTTCTGTTGTTCAGAGTGAAGGTTCCTGCATTTCTTTTTCTGATAGAGGATAATATTTGCCACTGATAGTAACACTTTGGAGTGAACAAGTTCTCCTGCTTTCCTCTCTAATTAATATTTCTAACCTCCATGTTTACTTTGTTTCATGTGCTAATGTTTAGTTGCTTTTTCAGGAACTTGGTGGAATTAGTACATCAATGGAAAGACAAAAGGCTATCTTGCAAGAGCTAATGATTGTTGTTAAAGATATGCTGCGCAATACAGAGGTTGCAGTGCGCTCTTTTATGATGTTACGCCCAAAATTTCTTCATCAAAGTGCACCTGCTACTGCAAGCGCTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGCAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTGCAGCAAACCGTAGCAAGATTTGAGAAATATCTTGTAGAATGCCGACAATGGGTTGAAGAATTGGAGCAGTTGATGGCCTTAG</genome_strand>
        <mrna_strand>TTTTGAGTTGGATGCAAGCCGCAGCATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGTGGAATTAGTACATCAATGGAAAGACAAAAGGCTATCTTGCAAGAGCTAATGATTGTTGTTAAAGATATGCTGCGCAATACAGAGGTTGCAGTGCGCTCTTTTATGATGTTACGCCCAAAATTTCTTCATCAAAGTGCACCTGCTACTGCAAGCGCTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGTAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTGCAGCAAACCGTAGCAAGATTTGAGAAATATCTTGTCGAATGCCGACAATGGGTTGAAGAATTGGAGCAGTTGATGGCCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424942" ref_strand="+" ref_description="SGN-E424942 [STM-44-G14]">
      <seq>tttaagcgttactgctccatcacaggcatcaggtgcaactgtagctccaacagcatctggttcagctcagtctacccccaatgcggcaatttttgatttttacagtgggataccaaaaaagccctctccctttttacagcaaactgtagcaagatttgagaaatatcttgtagaatgccgacaatgggttgaagaattggagcagttgatggccttagattctgacaggaattctatgaactccagttcatctttgttgcagtctcttccaaaagtcatgtcaaatgtgcatggcttttttgttcatgttgccgcaaaggtagagagcattcatcagtacattgaatcaatgaaaacagcatacctggctgatcagcgccgtcgaggggatggaagcgatccttttcttgaggcagatcggcgggaaacagctaaacaggaggcagctgcgacaagggtacatccaacattgcatttgcccacaatttcacaaccatcaactcaagtggcaggattaatttccagctcagcagcacctgaggtatccggtacaccacaaatgtcatctgcagtttcttttgcctcaacgggaagtggatcctcactctttgctacaccatccgttgctgcttcatcttcttacctgttcactacgtcaacaatgtcagctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="110826" stop="112952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111123" g_stop="111441" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111442" i_stop="112298" i_length="857">
            <donor d_prob="0.798" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112299" g_stop="112652" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="673" r_length="354" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E424942" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111123" e_stop="111441"/>
          <exon e_start="112299" e_stop="112652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGCGCTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGCAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTGCAGCAAACCGTAGCAAGATTTGAGAAATATCTTGTAGAATGCCGACAATGGGTTGAAGAATTGGAGCAGTTGATGGCCTTAGATTCTGACAGGAATTCTATGAACTCCAATTCATCTCTGTTGCAGTCTCTTCCAAATGTCATGTCGAATGTGCATGGATTTTTTGTTCATGTTGCTGCAAAGGTAATGGGGATTTTAAACTTTTGTAATGATGAGGGTTTTTAAAGATTTGACGGAAGTATCATGCTTAGTCAGAAGGGAGTAAAGGAGTAAAAATGACTAGGAGTACTTTGCCTTCTTGTTACGTTTATTATGACCAGACAAATATGCATTATATATATTCTAGGGGTCGTTTGGTAGAGTGTATAAAAATAATACCCGATAGAGTGTATTTGTAATGCATGTATTAGTTATACTTGTATCCGTTATGCATAGATTATTAGGCTTCAGTTCATGGAGTGTATACATTCCATGAAAAAATGCGCCAAACAAGGGATTACTGATACATGTAATTAATGCATGCATTATATTTGCTAATTTACTCTACCAAACAATGCCTTAAAGAGATGGCACTGGCTTTGTTTTCATGTTGCCACAGAGGTAATGGGAAGTGGAACTTTTTTGTAATGGTGAGGGCTTCTCAAGATTTGGTGAGAGTATCATGATGCTTAGTCAGAAGGGAGTAAAAGAGTAAAAATGACTAGGAGTACTTTGGCTTCTTTGTAACGTTTATTTTGACCTAACAAATATACATTATATATATTCTTGTAGCTTCCGATGCAGTTGATGTTCCTCATCAATTAGTTTTGTGCCACTTATATCTAGTATCAGAGAGTATCAGCATATTAGTTGATTTCTGATATACTTTTGAGGCAGCAAAAATTATAATGCTGCATGCATTCACAATTTGCTCTAGAATTCTAGTAGAGTTGCATGTGAAAAGTTTGTGTATCTTATTTTCATAATTTCTAGCTTACACCTTTATTTTTGGTTGCTGTGATTTTAAAAGGGAAAATATTTTTGTACTTTCGGTAAATCAGGTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCA</genome_strand>
        <mrna_strand>TTTAAGCGTTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGCAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTACAGCAAACTGTAGCAAGATTTGAGAAATATCTTGTAGAATGCCGACAATGGGTTGAAGAATTGGAGCAGTTGATGGCCTTAGATTCTGACAGGAATTCTATGAACTCCAGTTCATCTTTGTTGCAGTCTCTTCCAAAAGTCATGTCAAATGTGCATGGCTTTTTTGTTCATGTTGCCGCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAGCATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGAAGCGATCCTTTTCTTGAGGCAGATCGGCGGGAAACAGCTAAACAGGAGGCAGCTGCGACAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTGGCAGGATTAATTTCCAGCTCAGCAGCACCTGAGGTATCCGGTACACCACAAATGTCATCTGCAGTTTCTTTTGCCTCAACGGGAAGTGGATCCTCACTCTTTGCTACACCATCCGTTGCTGCTTCATCTTCTTACCTGTTCACTACGTCAACAATGTCAGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322129" ref_strand="+" ref_description="SGN-E322129 [cTOB-24-M15]">
      <seq>atggattttttgttcatgttgctgcaaaggtagagagtattcatcagtacattgaatcaatgaaaacagcatacctggctgatcagcgccgtcgaggggatgggagcgatccttttcttgaggctgatcggcgggaaacagctaaacaagaggcagctgcgaaaagggtacatccaacattgcatttgcccacaatttcacaaccatcaactcaagtagcaggattaatttccagctcagcagcacctggggtatccggtacaccacaaacgtcatctgcagtttcttctgcctcagcaggaagtggatcctcactatttgctaccccatccgttgctgcttcatcttcttccctgttcactactccaacaatgtcagctccagtctcctctttgttcggaacatctggtgcttccccccaaagttcactctttgggtccttgtccacttcaactccagcctttagtactccattatttggttctaccccagcttctggagtttcatcttttgcaacaccttttgcttcagggcctgcactagcatcaggggcaagctttgggactcaatctaagactagagcaaaaagtcgtacaagcagacgctagagaatgtgtttggtaattcatacatctgagattctaatggatggaaatctctatgctactgggtatctgtcacagtagctgggcaaagctncagcattttgacaaatcatgaaattttatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="111113" stop="117039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111413" g_stop="111441" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111442" i_stop="112298" i_length="857">
            <donor d_prob="0.798" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112299" g_stop="112800" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="531" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115858" g_stop="115898" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="572" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116579" g_stop="116739" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="732" r_length="160" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E322129" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111413" e_stop="111441"/>
          <exon e_start="112299" e_stop="112800"/>
          <exon e_start="115858" e_stop="115898"/>
          <exon e_start="116579" e_stop="116739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTTTTTGTTCATGTTGCTGCAAAGGTAATGGGGATTTTAAACTTTTGTAATGATGAGGGTTTTTAAAGATTTGACGGAAGTATCATGCTTAGTCAGAAGGGAGTAAAGGAGTAAAAATGACTAGGAGTACTTTGCCTTCTTGTTACGTTTATTATGACCAGACAAATATGCATTATATATATTCTAGGGGTCGTTTGGTAGAGTGTATAAAAATAATACCCGATAGAGTGTATTTGTAATGCATGTATTAGTTATACTTGTATCCGTTATGCATAGATTATTAGGCTTCAGTTCATGGAGTGTATACATTCCATGAAAAAATGCGCCAAACAAGGGATTACTGATACATGTAATTAATGCATGCATTATATTTGCTAATTTACTCTACCAAACAATGCCTTAAAGAGATGGCACTGGCTTTGTTTTCATGTTGCCACAGAGGTAATGGGAAGTGGAACTTTTTTGTAATGGTGAGGGCTTCTCAAGATTTGGTGAGAGTATCATGATGCTTAGTCAGAAGGGAGTAAAAGAGTAAAAATGACTAGGAGTACTTTGGCTTCTTTGTAACGTTTATTTTGACCTAACAAATATACATTATATATATTCTTGTAGCTTCCGATGCAGTTGATGTTCCTCATCAATTAGTTTTGTGCCACTTATATCTAGTATCAGAGAGTATCAGCATATTAGTTGATTTCTGATATACTTTTGAGGCAGCAAAAATTATAATGCTGCATGCATTCACAATTTGCTCTAGAATTCTAGTAGAGTTGCATGTGAAAAGTTTGTGTATCTTATTTTCATAATTTCTAGCTTACACCTTTATTTTTGGTTGCTGTGATTTTAAAAGGGAAAATATTTTTGTACTTTCGGTAAATCAGGTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAGGTATGTTTCCGCCAACCTGAATAATGACATATTTTTGCCCTCTGCTAGATTAGCTTTTGCAAAAGTTAAATTTATCTATAATCACTTTATCAGAAAAACTGAATATCTTTTGATTATTACCCCTACATAGTTTTGTATTATAGACTTCATAATGTAATTTGATGTAACATGCATCTATAACTTGATCTTTAGTTTATTGAATCAATCATATACTCCCTTGGTTTTAATTTATGTGATGCTATTTTCTTTTGGAACATTTCCAATTGCATTACACCGCTCCATTAATAAGGTAATTTTATACATCTTTCACAATTTTTAAGAATTCAAATCCATCTATTATTGGAATATTTAACTTTGATGCAATGTTTGCTTTATAAACTGGCTGTTGAACTATTACTTTATAATGTTCTTCAACTACGACTCACATAATACACAAGTAAGATTCAGCAACAATATACTTTCTGTTCCCACAAGTGGGTCTGGGAGAGTAGGGTGGGGTGTACATAGACTTTACCCCTACTTTGTTGGGTAGAGTGGTTGTTTCTGATGGACCCCCACGATTCAAGAAAACTCATGTTTCAGAACAGGTTTGAAAAATAATTGCACGAATAAAAAGTTATGATGAAAATACTGAAGGAAGAGAAAGTTATGATGAAAATACTGAAGAAAGAGAAGTACTGACACGGAGAGTAGCGGTGGACAATATGGAAATAGCGGAACCTTAGAGATTTTGAGAACAAGGACAGACGGAGAGTAGTATACAACAAGTCAAACTGAATTGTATTTTGACTCTCTGTTTTTGATGTAATTAGATTTGCCCTAATAATGATGTCTCGGTCATTGATGTCTTAAGACTCATTATAGGGATAGGACAATACTTTTAGAGTTCCTTGTGTAAATATGGTTTTCAGTTCAACCTATGCACTGATTTACAGGAATAGAAACAATTATCAATTTAAAAAAGAGAAGAAAAGAAAAGTACGGTCAGTAAAAAATAGTACAGAGAACCAAAGTAACGGAAGATTTTTTTTTTTTGAAAATGCGAATTGTTTCTATTTTTATAGAACAGTACATAGGTTGTGCTGAAACCCGTATTTACACAAGGATTTCTAATAATACCGACCTATCCCTATAATGAGTTTTAAAACATCAATGATAGAGACAATATCATTAGAGTAAATTTGATTACACCAAATCAAAATGCAATTTAGTTTAACTTGTTGCATACTACTCTCCCTATTCTCAAAAACTCTAAGATTGCTCTCTTTCCATATTGTCCCACCAAATAGTGGCAGGGATAATTCTCCAGTTACCTCTGTTTTTTGCTTGTGTCCTTGCTTCTTCCCAGCCATATAGAGCCTGTGAAATTCTCCCAGGCATGAACCAGGAGATATTTTTAAGTCTCAGGAACAGATGCCACAATTGACCAGTGACTTTGCATTGGATAAACAAATGATTGACGGTTTCTGCAGTTTTCCCACAGGAAAAACATCTAGAGCAAAGTGTAATTCCCCTCTTTATTAAGTTCTCCTGTGTCAATACTGCTTCTTTAGCCAATAACCACACAAAGCAAGACACCTTGTAGGGGATCTTGGCTTTCCATATATGTCTCCAGGGCCACTTGAATAACTGCAGATTTTGATGGTTCAACTTCTTGTACAATGCACCTACTGTAAAAATCCCTTTACTGTTTCCAACCACTGCAATCTATCTCGACCTATTTCCAGACCACTAAATTGATCAGTGCTTCTAAAAGATTCTGTTACTCTTGGAATTCCTAGTCATTGCGGTTTCTTCTGAATACGAAATTCCACCCTTGAGGAGTCCATAAGTCAGCTATAGTACTTAGTTGCTGAAGAACTAAATTGTGGATGTCAGGGAAGAGAGTCTCCATATTTCCTTCTGCATGCCAATTATCCTTCCAAAACCCAGTTTTTATGCCATCTACCACTTCGATTTTGGTGTTAGGTTTGAATTCATTTCAAAGTTCTCTAATGGATTTCCATAAGCTAACACCATAAGGGGTGGTACCTCCTTTGTCATCCAACTATCACTCTCTTCATATTTTGCCTTTATGACTAAGCTCCACAGATTCTGATTATCATTCGAGTACTTCCAAAGCCACTTCATCCTCAAAGTAAAGGAAGCATTAGTATTAACAGAATTGAAGAATAAGCTAATACTAGCATTATACTAACTATACTGTTAATAGAGAAGATGATTGCTCTAGATTAGGACCCTGCTCTACCTAAAGAGAGAAAAATTCTCGATGACTTACTAACCATCTACCCTAATTCTTGATCTCCATGCTTTCTATCTAAGTCATGTCCTCGGTGAGTGTGAGGTGTGTCATATCCTGTGTGATCACCTCTCCAATTCTTCCCCAGTCTAGCTCTACCACTTCTCAAACTTATCGCTGTCAACCTCTCACACCTTCTCCTGGCTTAAGTGTACAGTCATGTTATTATTTCAGATATCTTTTGCCTTTAACCAATTAGTTAATGCCCTTTGATGATTCACCTTTGTTGAGGTGGCCTACCGTATAAAAGAGTCCAGGAATTTCTTGGTCTGCTATGTTTTTTTATCATTTTTTTGTGGCTATTATTTCCAAAAGTTGTTGGTGGGGAAAAGTTGCTTTGTAATTTAGTTTTCTCTGAGGAAGTTACTTTGAGTAGTTGAATTTTTCCTTTTAGGAAAATTTCCTCTAAATGCTTGTGCTTTTGGTGATCTATTTTATCACATGCTATATTTTCAAAAATAAAAATTATTTTGTGATCCAATTTTTTTTCTACCCTTTATTTTGCCAATAACCTCCTTTCTTTTATATTAACCTACAGTTCGTTACTTAGTTCATTTGATATTAGAACTTTCAGATATCTTTAGCATATTCTTGATTCTGTCGTATTTTCGAATGAAAGGGATTTTTCTTTTTCATCCTGTTTTTCTTCTATTCCCAGAACCTGTATCCTTCAAATTTTGTTTGCTAATTTTTGAATCTGGTAACAGTAAAATTTGTTTGCTGAATTGTGCCTAACTGTTGTTCTTATGTTATTGAAGGGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCTGTGAGTATACATGTTCTCCTATATTGTCTCTTTCTTGTTTATGCCTTGACTGAAAGGAAAACACTTCTCGCCTATCCTTAAGCATGGCATGAGGAAAATGGAAATCTAAGTGGAGTAGAGGAATAGTTTATTTGGCGATGTTGGTTAACTTATCTGTTGACAAATTACTTTGTTGAATGTTAGGATGCTTTTACAAAAATCTTGCTGCTTTGAGTTTTCTATGTGATTCTTTTTTTTTCCTCAGAATCACCATGGTTCACCAACTACCGGGTTGATTTCTTATTAAAGAGAGAGAAACATACACAACAAATTGTTTGCCTTTCTATAAACAATTTTTTTATTTGACAAGGCCATCACAACTAAGAGTAGTGATGCAGTCATAATGGGCATAGACATATCTGGTACTGCCTCATGGTTGCTGAAATTGTTTTTATGAACTTTTGGTTCAAATTCTTTCATCATTTGTCTGGTATATGTTGCAGCAACACTTTGGCATTGATAGCTGTATCTTTCACAATATTTTATGAAAAGAAAGATACATGTTTTTGTTTACCAATTTGTACCCTACTTCATTATGGTATTATTTAAAAACCCTTATCAAAGAAGGTACTTGTGCTTTTGTTCTAAAAAAGCTCCTAATTCTGATGCCTATCTTTATTGTGTATCATTACTTTTGGCAGAAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTAC</genome_strand>
        <mrna_strand>ATGGATTTTTTGTTCATGTTGCTGCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGGTATCTGTCACAGTAGCTGGGCAAAGCTNCAGCATTTTGACAAATCATG-AAATTTTATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424943" ref_strand="-" ref_description="SGN-E424943 [STM-44-G14]">
      <seq>accccatccgttgctgcttcatcttcttcccctgttcactactccaacaatgtcagctccagtctcctctttgttcggaacatctggtgcttccccccaaagttcactctttgggtccttgtctacttcaactccagcctttagtactccattatttggttctacccctgcttctggagtttcatcttttgcaacaccttttgcttcaggggctgctctagcatcaggggcaagttttgggactcaatctaagactagagcaaaaagtcgtacaggcagacgctagataatgtgtttggtaattcatacatctaagattctgaatggatggaaatctctatgctactggttacctgtcacagtagcttggcaagctcaagcattgacaaatcatgaaataatgcagtttatctacctccagtttcattattgtggaccgctatttctgcagagatgttagttcatagggatgtcgcggcaatgctatttcatactatttttcaattaattctcctgatctagtgtatcaagcttgattttgtactcgagtctcttctagatgatttcagttgccctttgtagaaatgaaactggttatatttgtgatgctttggatatttgtataaacacttaaggaaaaaatctcatttgtgtaaaaaaattagaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="112293" stop="117258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112593" g_stop="112800" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115858" g_stop="115898" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="250" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116579" g_stop="116957" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="633" r_length="383" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E424943" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112593" e_stop="112800"/>
          <exon e_start="115858" e_stop="115898"/>
          <exon e_start="116579" e_stop="116957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCATCCGTTGCTGCTTCATCTTCTT-CCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAGGTATGTTTCCGCCAACCTGAATAATGACATATTTTTGCCCTCTGCTAGATTAGCTTTTGCAAAAGTTAAATTTATCTATAATCACTTTATCAGAAAAACTGAATATCTTTTGATTATTACCCCTACATAGTTTTGTATTATAGACTTCATAATGTAATTTGATGTAACATGCATCTATAACTTGATCTTTAGTTTATTGAATCAATCATATACTCCCTTGGTTTTAATTTATGTGATGCTATTTTCTTTTGGAACATTTCCAATTGCATTACACCGCTCCATTAATAAGGTAATTTTATACATCTTTCACAATTTTTAAGAATTCAAATCCATCTATTATTGGAATATTTAACTTTGATGCAATGTTTGCTTTATAAACTGGCTGTTGAACTATTACTTTATAATGTTCTTCAACTACGACTCACATAATACACAAGTAAGATTCAGCAACAATATACTTTCTGTTCCCACAAGTGGGTCTGGGAGAGTAGGGTGGGGTGTACATAGACTTTACCCCTACTTTGTTGGGTAGAGTGGTTGTTTCTGATGGACCCCCACGATTCAAGAAAACTCATGTTTCAGAACAGGTTTGAAAAATAATTGCACGAATAAAAAGTTATGATGAAAATACTGAAGGAAGAGAAAGTTATGATGAAAATACTGAAGAAAGAGAAGTACTGACACGGAGAGTAGCGGTGGACAATATGGAAATAGCGGAACCTTAGAGATTTTGAGAACAAGGACAGACGGAGAGTAGTATACAACAAGTCAAACTGAATTGTATTTTGACTCTCTGTTTTTGATGTAATTAGATTTGCCCTAATAATGATGTCTCGGTCATTGATGTCTTAAGACTCATTATAGGGATAGGACAATACTTTTAGAGTTCCTTGTGTAAATATGGTTTTCAGTTCAACCTATGCACTGATTTACAGGAATAGAAACAATTATCAATTTAAAAAAGAGAAGAAAAGAAAAGTACGGTCAGTAAAAAATAGTACAGAGAACCAAAGTAACGGAAGATTTTTTTTTTTTGAAAATGCGAATTGTTTCTATTTTTATAGAACAGTACATAGGTTGTGCTGAAACCCGTATTTACACAAGGATTTCTAATAATACCGACCTATCCCTATAATGAGTTTTAAAACATCAATGATAGAGACAATATCATTAGAGTAAATTTGATTACACCAAATCAAAATGCAATTTAGTTTAACTTGTTGCATACTACTCTCCCTATTCTCAAAAACTCTAAGATTGCTCTCTTTCCATATTGTCCCACCAAATAGTGGCAGGGATAATTCTCCAGTTACCTCTGTTTTTTGCTTGTGTCCTTGCTTCTTCCCAGCCATATAGAGCCTGTGAAATTCTCCCAGGCATGAACCAGGAGATATTTTTAAGTCTCAGGAACAGATGCCACAATTGACCAGTGACTTTGCATTGGATAAACAAATGATTGACGGTTTCTGCAGTTTTCCCACAGGAAAAACATCTAGAGCAAAGTGTAATTCCCCTCTTTATTAAGTTCTCCTGTGTCAATACTGCTTCTTTAGCCAATAACCACACAAAGCAAGACACCTTGTAGGGGATCTTGGCTTTCCATATATGTCTCCAGGGCCACTTGAATAACTGCAGATTTTGATGGTTCAACTTCTTGTACAATGCACCTACTGTAAAAATCCCTTTACTGTTTCCAACCACTGCAATCTATCTCGACCTATTTCCAGACCACTAAATTGATCAGTGCTTCTAAAAGATTCTGTTACTCTTGGAATTCCTAGTCATTGCGGTTTCTTCTGAATACGAAATTCCACCCTTGAGGAGTCCATAAGTCAGCTATAGTACTTAGTTGCTGAAGAACTAAATTGTGGATGTCAGGGAAGAGAGTCTCCATATTTCCTTCTGCATGCCAATTATCCTTCCAAAACCCAGTTTTTATGCCATCTACCACTTCGATTTTGGTGTTAGGTTTGAATTCATTTCAAAGTTCTCTAATGGATTTCCATAAGCTAACACCATAAGGGGTGGTACCTCCTTTGTCATCCAACTATCACTCTCTTCATATTTTGCCTTTATGACTAAGCTCCACAGATTCTGATTATCATTCGAGTACTTCCAAAGCCACTTCATCCTCAAAGTAAAGGAAGCATTAGTATTAACAGAATTGAAGAATAAGCTAATACTAGCATTATACTAACTATACTGTTAATAGAGAAGATGATTGCTCTAGATTAGGACCCTGCTCTACCTAAAGAGAGAAAAATTCTCGATGACTTACTAACCATCTACCCTAATTCTTGATCTCCATGCTTTCTATCTAAGTCATGTCCTCGGTGAGTGTGAGGTGTGTCATATCCTGTGTGATCACCTCTCCAATTCTTCCCCAGTCTAGCTCTACCACTTCTCAAACTTATCGCTGTCAACCTCTCACACCTTCTCCTGGCTTAAGTGTACAGTCATGTTATTATTTCAGATATCTTTTGCCTTTAACCAATTAGTTAATGCCCTTTGATGATTCACCTTTGTTGAGGTGGCCTACCGTATAAAAGAGTCCAGGAATTTCTTGGTCTGCTATGTTTTTTTATCATTTTTTTGTGGCTATTATTTCCAAAAGTTGTTGGTGGGGAAAAGTTGCTTTGTAATTTAGTTTTCTCTGAGGAAGTTACTTTGAGTAGTTGAATTTTTCCTTTTAGGAAAATTTCCTCTAAATGCTTGTGCTTTTGGTGATCTATTTTATCACATGCTATATTTTCAAAAATAAAAATTATTTTGTGATCCAATTTTTTTTCTACCCTTTATTTTGCCAATAACCTCCTTTCTTTTATATTAACCTACAGTTCGTTACTTAGTTCATTTGATATTAGAACTTTCAGATATCTTTAGCATATTCTTGATTCTGTCGTATTTTCGAATGAAAGGGATTTTTCTTTTTCATCCTGTTTTTCTTCTATTCCCAGAACCTGTATCCTTCAAATTTTGTTTGCTAATTTTTGAATCTGGTAACAGTAAAATTTGTTTGCTGAATTGTGCCTAACTGTTGTTCTTATGTTATTGAAGGGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCTGTGAGTATACATGTTCTCCTATATTGTCTCTTTCTTGTTTATGCCTTGACTGAAAGGAAAACACTTCTCGCCTATCCTTAAGCATGGCATGAGGAAAATGGAAATCTAAGTGGAGTAGAGGAATAGTTTATTTGGCGATGTTGGTTAACTTATCTGTTGACAAATTACTTTGTTGAATGTTAGGATGCTTTTACAAAAATCTTGCTGCTTTGAGTTTTCTATGTGATTCTTTTTTTTTCCTCAGAATCACCATGGTTCACCAACTACCGGGTTGATTTCTTATTAAAGAGAGAGAAACATACACAACAAATTGTTTGCCTTTCTATAAACAATTTTTTTATTTGACAAGGCCATCACAACTAAGAGTAGTGATGCAGTCATAATGGGCATAGACATATCTGGTACTGCCTCATGGTTGCTGAAATTGTTTTTATGAACTTTTGGTTCAAATTCTTTCATCATTTGTCTGGTATATGTTGCAGCAACACTTTGGCATTGATAGCTGTATCTTTCACAATATTTTATGAAAAGAAAGATACATGTTTTTGTTTACCAATTTGTACCCTACTTCATTATGGTATTATTTAAAAACCCTTATCAAAGAAGGTACTTGTGCTTTTGTTCTAAAAAAGCTCCTAATTCTGATGCCTATCTTTATTGTGTATCATTACTTTTGGCAGAAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCT-AATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATG-AA-AAT----TTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTG</genome_strand>
        <mrna_strand>ACCCCATCCGTTGCTGCTTCATCTTCTTCCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCTACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCTGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGCTCTAGCATCAGGGGCAAGTTTTGGGACTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTAGAGCAAAAAGTCGTACAGGCAGACGCTAGATAATGTGTTTGGTAATTCATACATCTAAGATTCTGAATGGATGGAAATCTCTATGCTACTGGTTACCTGTCACAGTAGCTTGGC-AAGCTCAAGCA--TTGACAAATCATGAAATAATGCAGTTTATCTACCTCCAGTTTCATTATTGTGGACCGCTATTTCTGCAGAGATGTTAGTTCATAGGGATGTCGCGGCAATGCTATTTCATACTATTTTTCAATTAATTCTCCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCTTTGTAGAAATGAAACTGGTTATATTTGTGATGCTTTGGATATTTGTATAAACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602779" ref_strand="+" ref_description="SGN-E602779 [55851]">
      <seq>ggaacatctggtgcttccccccaaagttcactctttgggtccttgtctacttcaactccagcctttagtactccattatttggttctacccctgcttctggagtttcatcttttgcaacaccttttgcttcagggggctgctctagcatcaggggcaagttttgggactcaatctaagactagagcaaaaagtcgtacaggcagacgctagataatgtgtttggtaattcatacatctaagattctgaatggatggaaatctctatgctactggttacctgtcacagtagcttggcaagctcaagcattgacaaatcatgaaataatgcagtttatctacctccagtttcattattgtggaccgctatttctgcagagatgttagttcatagggatgtcgcggcaatgctatttcatactatttttcaattaattctcctgatctagtgtatcaagcttgattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="112368" stop="117166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112668" g_stop="112800" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115858" g_stop="115898" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="175" r_length="42" r_score="0.878"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116579" g_stop="116866" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="467" r_length="292" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E602779" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112668" e_stop="112800"/>
          <exon e_start="115858" e_stop="115898"/>
          <exon e_start="116579" e_stop="116866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAGGTATGTTTCCGCCAACCTGAATAATGACATATTTTTGCCCTCTGCTAGATTAGCTTTTGCAAAAGTTAAATTTATCTATAATCACTTTATCAGAAAAACTGAATATCTTTTGATTATTACCCCTACATAGTTTTGTATTATAGACTTCATAATGTAATTTGATGTAACATGCATCTATAACTTGATCTTTAGTTTATTGAATCAATCATATACTCCCTTGGTTTTAATTTATGTGATGCTATTTTCTTTTGGAACATTTCCAATTGCATTACACCGCTCCATTAATAAGGTAATTTTATACATCTTTCACAATTTTTAAGAATTCAAATCCATCTATTATTGGAATATTTAACTTTGATGCAATGTTTGCTTTATAAACTGGCTGTTGAACTATTACTTTATAATGTTCTTCAACTACGACTCACATAATACACAAGTAAGATTCAGCAACAATATACTTTCTGTTCCCACAAGTGGGTCTGGGAGAGTAGGGTGGGGTGTACATAGACTTTACCCCTACTTTGTTGGGTAGAGTGGTTGTTTCTGATGGACCCCCACGATTCAAGAAAACTCATGTTTCAGAACAGGTTTGAAAAATAATTGCACGAATAAAAAGTTATGATGAAAATACTGAAGGAAGAGAAAGTTATGATGAAAATACTGAAGAAAGAGAAGTACTGACACGGAGAGTAGCGGTGGACAATATGGAAATAGCGGAACCTTAGAGATTTTGAGAACAAGGACAGACGGAGAGTAGTATACAACAAGTCAAACTGAATTGTATTTTGACTCTCTGTTTTTGATGTAATTAGATTTGCCCTAATAATGATGTCTCGGTCATTGATGTCTTAAGACTCATTATAGGGATAGGACAATACTTTTAGAGTTCCTTGTGTAAATATGGTTTTCAGTTCAACCTATGCACTGATTTACAGGAATAGAAACAATTATCAATTTAAAAAAGAGAAGAAAAGAAAAGTACGGTCAGTAAAAAATAGTACAGAGAACCAAAGTAACGGAAGATTTTTTTTTTTTGAAAATGCGAATTGTTTCTATTTTTATAGAACAGTACATAGGTTGTGCTGAAACCCGTATTTACACAAGGATTTCTAATAATACCGACCTATCCCTATAATGAGTTTTAAAACATCAATGATAGAGACAATATCATTAGAGTAAATTTGATTACACCAAATCAAAATGCAATTTAGTTTAACTTGTTGCATACTACTCTCCCTATTCTCAAAAACTCTAAGATTGCTCTCTTTCCATATTGTCCCACCAAATAGTGGCAGGGATAATTCTCCAGTTACCTCTGTTTTTTGCTTGTGTCCTTGCTTCTTCCCAGCCATATAGAGCCTGTGAAATTCTCCCAGGCATGAACCAGGAGATATTTTTAAGTCTCAGGAACAGATGCCACAATTGACCAGTGACTTTGCATTGGATAAACAAATGATTGACGGTTTCTGCAGTTTTCCCACAGGAAAAACATCTAGAGCAAAGTGTAATTCCCCTCTTTATTAAGTTCTCCTGTGTCAATACTGCTTCTTTAGCCAATAACCACACAAAGCAAGACACCTTGTAGGGGATCTTGGCTTTCCATATATGTCTCCAGGGCCACTTGAATAACTGCAGATTTTGATGGTTCAACTTCTTGTACAATGCACCTACTGTAAAAATCCCTTTACTGTTTCCAACCACTGCAATCTATCTCGACCTATTTCCAGACCACTAAATTGATCAGTGCTTCTAAAAGATTCTGTTACTCTTGGAATTCCTAGTCATTGCGGTTTCTTCTGAATACGAAATTCCACCCTTGAGGAGTCCATAAGTCAGCTATAGTACTTAGTTGCTGAAGAACTAAATTGTGGATGTCAGGGAAGAGAGTCTCCATATTTCCTTCTGCATGCCAATTATCCTTCCAAAACCCAGTTTTTATGCCATCTACCACTTCGATTTTGGTGTTAGGTTTGAATTCATTTCAAAGTTCTCTAATGGATTTCCATAAGCTAACACCATAAGGGGTGGTACCTCCTTTGTCATCCAACTATCACTCTCTTCATATTTTGCCTTTATGACTAAGCTCCACAGATTCTGATTATCATTCGAGTACTTCCAAAGCCACTTCATCCTCAAAGTAAAGGAAGCATTAGTATTAACAGAATTGAAGAATAAGCTAATACTAGCATTATACTAACTATACTGTTAATAGAGAAGATGATTGCTCTAGATTAGGACCCTGCTCTACCTAAAGAGAGAAAAATTCTCGATGACTTACTAACCATCTACCCTAATTCTTGATCTCCATGCTTTCTATCTAAGTCATGTCCTCGGTGAGTGTGAGGTGTGTCATATCCTGTGTGATCACCTCTCCAATTCTTCCCCAGTCTAGCTCTACCACTTCTCAAACTTATCGCTGTCAACCTCTCACACCTTCTCCTGGCTTAAGTGTACAGTCATGTTATTATTTCAGATATCTTTTGCCTTTAACCAATTAGTTAATGCCCTTTGATGATTCACCTTTGTTGAGGTGGCCTACCGTATAAAAGAGTCCAGGAATTTCTTGGTCTGCTATGTTTTTTTATCATTTTTTTGTGGCTATTATTTCCAAAAGTTGTTGGTGGGGAAAAGTTGCTTTGTAATTTAGTTTTCTCTGAGGAAGTTACTTTGAGTAGTTGAATTTTTCCTTTTAGGAAAATTTCCTCTAAATGCTTGTGCTTTTGGTGATCTATTTTATCACATGCTATATTTTCAAAAATAAAAATTATTTTGTGATCCAATTTTTTTTCTACCCTTTATTTTGCCAATAACCTCCTTTCTTTTATATTAACCTACAGTTCGTTACTTAGTTCATTTGATATTAGAACTTTCAGATATCTTTAGCATATTCTTGATTCTGTCGTATTTTCGAATGAAAGGGATTTTTCTTTTTCATCCTGTTTTTCTTCTATTCCCAGAACCTGTATCCTTCAAATTTTGTTTGCTAATTTTTGAATCTGGTAACAGTAAAATTTGTTTGCTGAATTGTGCCTAACTGTTGTTCTTATGTTATTGAAG-GGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCTGTGAGTATACATGTTCTCCTATATTGTCTCTTTCTTGTTTATGCCTTGACTGAAAGGAAAACACTTCTCGCCTATCCTTAAGCATGGCATGAGGAAAATGGAAATCTAAGTGGAGTAGAGGAATAGTTTATTTGGCGATGTTGGTTAACTTATCTGTTGACAAATTACTTTGTTGAATGTTAGGATGCTTTTACAAAAATCTTGCTGCTTTGAGTTTTCTATGTGATTCTTTTTTTTTCCTCAGAATCACCATGGTTCACCAACTACCGGGTTGATTTCTTATTAAAGAGAGAGAAACATACACAACAAATTGTTTGCCTTTCTATAAACAATTTTTTTATTTGACAAGGCCATCACAACTAAGAGTAGTGATGCAGTCATAATGGGCATAGACATATCTGGTACTGCCTCATGGTTGCTGAAATTGTTTTTATGAACTTTTGGTTCAAATTCTTTCATCATTTGTCTGGTATATGTTGCAGCAACACTTTGGCATTGATAGCTGTATCTTTCACAATATTTTATGAAAAGAAAGATACATGTTTTTGTTTACCAATTTGTACCCTACTTCATTATGGTATTATTTAAAAACCCTTATCAAAGAAGGTACTTGTGCTTTTGTTCTAAAAAAGCTCCTAATTCTGATGCCTATCTTTATTGTGTATCATTACTTTTGGCAGAAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCT-AATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATG-AA-AAT----TTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGT</genome_strand>
        <mrna_strand>GGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCTACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCTGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCTGCTCTAGCATCAGGGGCAAGTTTTGGGACTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTAGAGCAAAAAGTCGTACAGGCAGACGCTAGATAATGTGTTTGGTAATTCATACATCTAAGATTCTGAATGGATGGAAATCTCTATGCTACTGGTTACCTGTCACAGTAGCTTGGC-AAGCTCAAGCA--TTGACAAATCATGAAATAATGCAGTTTATCTACCTCCAGTTTCATTATTGTGGACCGCTATTTCTGCAGAGATGTTAGTTCATAGGGATGTCGCGGCAATGCTATTTCATACTATTTTTCAATTAATTCTCCTGATCTAGTGTATCAAGCTTGATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355311" ref_strand="+" ref_description="SGN-E355311 [cTOS-18-O23]">
      <seq>tactccattatttggttctaccccagcttctggagtttcatcttttgcaacaccttttgcttcagggcctgcactagcatcaggggcaagctttgggactcaatctaagactagagcaaaaagtcgtacaagcagacgctagagaatgtgtttggtaattcatacatctgagattctaatggatggaaatctctatgctactggttatctgtcacagtagcttggcaaagctcaagcattttgacaaatcatgaaaattttatctacctccagtttcattattgtggaccagtatctctgcagagatgttcgttcacaaggatgtcgcggcaatgttatgtcatactatttttcacttaattctgctgatctagtgtatcaagcttgattttgtactcgagtctcttctagatgatttcagttgcccattgtagaaatagaactggttatatttgtgatgctttggatacttgtgtaaacacttgattgagatctcatctgttgtagacgcgttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="112436" stop="117291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112736" g_stop="112800" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115858" g_stop="115898" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="106" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116579" g_stop="116991" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="519" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E355311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112736" e_stop="112800"/>
          <exon e_start="115858" e_stop="115898"/>
          <exon e_start="116579" e_stop="116991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAGGTATGTTTCCGCCAACCTGAATAATGACATATTTTTGCCCTCTGCTAGATTAGCTTTTGCAAAAGTTAAATTTATCTATAATCACTTTATCAGAAAAACTGAATATCTTTTGATTATTACCCCTACATAGTTTTGTATTATAGACTTCATAATGTAATTTGATGTAACATGCATCTATAACTTGATCTTTAGTTTATTGAATCAATCATATACTCCCTTGGTTTTAATTTATGTGATGCTATTTTCTTTTGGAACATTTCCAATTGCATTACACCGCTCCATTAATAAGGTAATTTTATACATCTTTCACAATTTTTAAGAATTCAAATCCATCTATTATTGGAATATTTAACTTTGATGCAATGTTTGCTTTATAAACTGGCTGTTGAACTATTACTTTATAATGTTCTTCAACTACGACTCACATAATACACAAGTAAGATTCAGCAACAATATACTTTCTGTTCCCACAAGTGGGTCTGGGAGAGTAGGGTGGGGTGTACATAGACTTTACCCCTACTTTGTTGGGTAGAGTGGTTGTTTCTGATGGACCCCCACGATTCAAGAAAACTCATGTTTCAGAACAGGTTTGAAAAATAATTGCACGAATAAAAAGTTATGATGAAAATACTGAAGGAAGAGAAAGTTATGATGAAAATACTGAAGAAAGAGAAGTACTGACACGGAGAGTAGCGGTGGACAATATGGAAATAGCGGAACCTTAGAGATTTTGAGAACAAGGACAGACGGAGAGTAGTATACAACAAGTCAAACTGAATTGTATTTTGACTCTCTGTTTTTGATGTAATTAGATTTGCCCTAATAATGATGTCTCGGTCATTGATGTCTTAAGACTCATTATAGGGATAGGACAATACTTTTAGAGTTCCTTGTGTAAATATGGTTTTCAGTTCAACCTATGCACTGATTTACAGGAATAGAAACAATTATCAATTTAAAAAAGAGAAGAAAAGAAAAGTACGGTCAGTAAAAAATAGTACAGAGAACCAAAGTAACGGAAGATTTTTTTTTTTTGAAAATGCGAATTGTTTCTATTTTTATAGAACAGTACATAGGTTGTGCTGAAACCCGTATTTACACAAGGATTTCTAATAATACCGACCTATCCCTATAATGAGTTTTAAAACATCAATGATAGAGACAATATCATTAGAGTAAATTTGATTACACCAAATCAAAATGCAATTTAGTTTAACTTGTTGCATACTACTCTCCCTATTCTCAAAAACTCTAAGATTGCTCTCTTTCCATATTGTCCCACCAAATAGTGGCAGGGATAATTCTCCAGTTACCTCTGTTTTTTGCTTGTGTCCTTGCTTCTTCCCAGCCATATAGAGCCTGTGAAATTCTCCCAGGCATGAACCAGGAGATATTTTTAAGTCTCAGGAACAGATGCCACAATTGACCAGTGACTTTGCATTGGATAAACAAATGATTGACGGTTTCTGCAGTTTTCCCACAGGAAAAACATCTAGAGCAAAGTGTAATTCCCCTCTTTATTAAGTTCTCCTGTGTCAATACTGCTTCTTTAGCCAATAACCACACAAAGCAAGACACCTTGTAGGGGATCTTGGCTTTCCATATATGTCTCCAGGGCCACTTGAATAACTGCAGATTTTGATGGTTCAACTTCTTGTACAATGCACCTACTGTAAAAATCCCTTTACTGTTTCCAACCACTGCAATCTATCTCGACCTATTTCCAGACCACTAAATTGATCAGTGCTTCTAAAAGATTCTGTTACTCTTGGAATTCCTAGTCATTGCGGTTTCTTCTGAATACGAAATTCCACCCTTGAGGAGTCCATAAGTCAGCTATAGTACTTAGTTGCTGAAGAACTAAATTGTGGATGTCAGGGAAGAGAGTCTCCATATTTCCTTCTGCATGCCAATTATCCTTCCAAAACCCAGTTTTTATGCCATCTACCACTTCGATTTTGGTGTTAGGTTTGAATTCATTTCAAAGTTCTCTAATGGATTTCCATAAGCTAACACCATAAGGGGTGGTACCTCCTTTGTCATCCAACTATCACTCTCTTCATATTTTGCCTTTATGACTAAGCTCCACAGATTCTGATTATCATTCGAGTACTTCCAAAGCCACTTCATCCTCAAAGTAAAGGAAGCATTAGTATTAACAGAATTGAAGAATAAGCTAATACTAGCATTATACTAACTATACTGTTAATAGAGAAGATGATTGCTCTAGATTAGGACCCTGCTCTACCTAAAGAGAGAAAAATTCTCGATGACTTACTAACCATCTACCCTAATTCTTGATCTCCATGCTTTCTATCTAAGTCATGTCCTCGGTGAGTGTGAGGTGTGTCATATCCTGTGTGATCACCTCTCCAATTCTTCCCCAGTCTAGCTCTACCACTTCTCAAACTTATCGCTGTCAACCTCTCACACCTTCTCCTGGCTTAAGTGTACAGTCATGTTATTATTTCAGATATCTTTTGCCTTTAACCAATTAGTTAATGCCCTTTGATGATTCACCTTTGTTGAGGTGGCCTACCGTATAAAAGAGTCCAGGAATTTCTTGGTCTGCTATGTTTTTTTATCATTTTTTTGTGGCTATTATTTCCAAAAGTTGTTGGTGGGGAAAAGTTGCTTTGTAATTTAGTTTTCTCTGAGGAAGTTACTTTGAGTAGTTGAATTTTTCCTTTTAGGAAAATTTCCTCTAAATGCTTGTGCTTTTGGTGATCTATTTTATCACATGCTATATTTTCAAAAATAAAAATTATTTTGTGATCCAATTTTTTTTCTACCCTTTATTTTGCCAATAACCTCCTTTCTTTTATATTAACCTACAGTTCGTTACTTAGTTCATTTGATATTAGAACTTTCAGATATCTTTAGCATATTCTTGATTCTGTCGTATTTTCGAATGAAAGGGATTTTTCTTTTTCATCCTGTTTTTCTTCTATTCCCAGAACCTGTATCCTTCAAATTTTGTTTGCTAATTTTTGAATCTGGTAACAGTAAAATTTGTTTGCTGAATTGTGCCTAACTGTTGTTCTTATGTTATTGAAGGGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCTGTGAGTATACATGTTCTCCTATATTGTCTCTTTCTTGTTTATGCCTTGACTGAAAGGAAAACACTTCTCGCCTATCCTTAAGCATGGCATGAGGAAAATGGAAATCTAAGTGGAGTAGAGGAATAGTTTATTTGGCGATGTTGGTTAACTTATCTGTTGACAAATTACTTTGTTGAATGTTAGGATGCTTTTACAAAAATCTTGCTGCTTTGAGTTTTCTATGTGATTCTTTTTTTTTCCTCAGAATCACCATGGTTCACCAACTACCGGGTTGATTTCTTATTAAAGAGAGAGAAACATACACAACAAATTGTTTGCCTTTCTATAAACAATTTTTTTATTTGACAAGGCCATCACAACTAAGAGTAGTGATGCAGTCATAATGGGCATAGACATATCTGGTACTGCCTCATGGTTGCTGAAATTGTTTTTATGAACTTTTGGTTCAAATTCTTTCATCATTTGTCTGGTATATGTTGCAGCAACACTTTGGCATTGATAGCTGTATCTTTCACAATATTTTATGAAAAGAAAGATACATGTTTTTGTTTACCAATTTGTACCCTACTTCATTATGGTATTATTTAAAAACCCTTATCAAAGAAGGTACTTGTGCTTTTGTTCTAAAAAAGCTCCTAATTCTGATGCCTATCTTTATTGTGTATCATTACTTTTGGCAGAAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTGATTGAGATCTCATCTGTTGTAGACGCGTTCCCCC</genome_strand>
        <mrna_strand>TACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTGATTGAGATCTCATCTGTTGTAGACGCGTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709965" ref_strand="+" ref_description="SGN-E709965 [FA53DB04]">
      <seq>cgggttttcattaatatcctcgataaggatgttgtcctttggactgaaatgattgctggacattgtaggatcggtaatgctgagaactctattaaattgttccatgagatgttacaggaaggccacaaggctgatgaatttactcttaccagtgccttaagcgtgtgtgctgaagtggcaacagtgaggcagggtgaagtgattcattccctggctgccaaaacaggctacagtgctgacatgaccgtttgtgggagtctggttgatatgtatgctaaaattggaaaccttgcagctgcagatcttatgttttccagtgtcaccatgcctaatctaatatgctggaactcaatgcttggtgcatatggttaccatgggaaggcagaggaggcatttaagatgttcaatgatattttacaacatggcctaaaaccagatcatgtaacatttatctctctgcttgcagcatgtagccactgtggtttggtcaaccatggtatatatttctggaataaaatgaaagaaaatggcttaaaaccaagcctgaagcattactcctgcatgatcactttgttgagtcgagctggattgctggaggaagctgaacatgttataatggaatcaccctttggagttgaatgtcttcaattatggagaattttactgagctcctgtgtaagtaaaggaaaccagataataggaatacgtgttgcgaagcaggttttggggatggatgcagaagacagtgcaacaaatgtactgctttccaatttatttgcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="119186" stop="117805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118888" g_stop="118105" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E709965" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118888" e_stop="118105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTTCATTAATATCCTCGATAAGGATGTTGTCCTTTGGACTGAAATGATTGCTGGACATTGTAGGATCGGTAATGCTGAGAACTCTATTAAATTGTTCCATGAGATGTTACAGGAAGGCCACAAGGCTGATGAATTTACTCTTACCAGTGCCTTAAGCGTGTGTGCTGAAGTGGCAACAGTGAGGCAGGGTGAAGTGATTCATTCCCTGGCTGCCAAAACAGGCTACAGTGCTGACATGACCGTTTGTGGGAGTCTGGTTGATATGTATGCTAAAATTGGAAACCTTGCAGCTGCAGATCTTATGTTTTCCAGTGTCACCATGCCTAATCTAATATGCTGGAACTCAATGCTTGGTGCATATGGTTACCATGGGAAGGCAGAGGAGGCATTTAAGATGTTCAATGATATTTTACAACATGGCCTAAAACCAGATCATGTAACATTTATCTCTCTGCTTGCAGCATGTAGCCACTGTGGTTTGGTCAACCATGGTATATATTTCTGGAATAAAATGAAAGAAAATGGCTTAAAACCAAGCCTGAAGCATTACTCCTGCATGATCACTTTGTTGAGTCGAGCTGGATTGCTGGAGGAAGCTGAACATGTTATAATGGAATCACCCTTTGGAGTTGAATGTCTTCAATTATGGAGAATTTTACTGAGCTCCTGTGTAAGTAAAGGAAACCAGATAATAGGAATACGTGTTGCGAAGCAGGTTTTGGGGATGGATGCAGAAGACAGTGCAACAAATGTACTGCTTTCCAATTTATTTGCTTCAA</genome_strand>
        <mrna_strand>CGGGTTTTCATTAATATCCTCGATAAGGATGTTGTCCTTTGGACTGAAATGATTGCTGGACATTGTAGGATCGGTAATGCTGAGAACTCTATTAAATTGTTCCATGAGATGTTACAGGAAGGCCACAAGGCTGATGAATTTACTCTTACCAGTGCCTTAAGCGTGTGTGCTGAAGTGGCAACAGTGAGGCAGGGTGAAGTGATTCATTCCCTGGCTGCCAAAACAGGCTACAGTGCTGACATGACCGTTTGTGGGAGTCTGGTTGATATGTATGCTAAAATTGGAAACCTTGCAGCTGCAGATCTTATGTTTTCCAGTGTCACCATGCCTAATCTAATATGCTGGAACTCAATGCTTGGTGCATATGGTTACCATGGGAAGGCAGAGGAGGCATTTAAGATGTTCAATGATATTTTACAACATGGCCTAAAACCAGATCATGTAACATTTATCTCTCTGCTTGCAGCATGTAGCCACTGTGGTTTGGTCAACCATGGTATATATTTCTGGAATAAAATGAAAGAAAATGGCTTAAAACCAAGCCTGAAGCATTACTCCTGCATGATCACTTTGTTGAGTCGAGCTGGATTGCTGGAGGAAGCTGAACATGTTATAATGGAATCACCCTTTGGAGTTGAATGTCTTCAATTATGGAGAATTTTACTGAGCTCCTGTGTAAGTAAAGGAAACCAGATAATAGGAATACGTGTTGCGAAGCAGGTTTTGGGGATGGATGCAGAAGACAGTGCAACAAATGTACTGCTTTCCAATTTATTTGCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709955" ref_strand="+" ref_description="SGN-E709955 [FA53DA04]">
      <seq>cccttgaatcattaatatcctcgataaggatgttgtcctttgcactgaaatgattgctggacattgtaggatcggtaatgctgagaactctattaaattgttccatgagatgttacaggaaggccacaaggctgatgaatttactcttaccagtgccttaagcgtgtgtgctgaagtggcaacagtgaggcagggtgaagtgattcattccctggctgccaaaacaggctacagtgctgacatgaccgtttgtgggagtctggttgatatgtatgctaaaattggaaaccttgcagctgcagatcttatgttttccagtgtcaccatgcctaatctaatatgctggaactcaatgcttggtgcatatggttaccatgggaaggcagaggaggcatttaagatgttcaatgatattttacaacatggcctaaaaccagatcatgtaacatttatctctctgcttgcagcatgtagccactgtggtttggtcaaccatggtatatatttctggaataaaatgaaagaaaatggcttaaaaccaagcctgaagcattactcctgcatgatcactttgttgagtcgagctggattgctggaggaagctgaacatgttataatggaatcaccctttggagttgaatgtcttcaattatggagaattttactgagctcctgtgtaagtaaaggaaaccagataataggaatacgtgttgcgaagcaggttttggggatggatgcagaagacagtgcaacaaatgtactgctttcccatttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="119181" stop="117811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118889" g_stop="118111" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E709955" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118889" e_stop="118111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTTTCATTAATATCCTCGATAAGGATGTTGTCCTTTGGACTGAAATGATTGCTGGACATTGTAGGATCGGTAATGCTGAGAACTCTATTAAATTGTTCCATGAGATGTTACAGGAAGGCCACAAGGCTGATGAATTTACTCTTACCAGTGCCTTAAGCGTGTGTGCTGAAGTGGCAACAGTGAGGCAGGGTGAAGTGATTCATTCCCTGGCTGCCAAAACAGGCTACAGTGCTGACATGACCGTTTGTGGGAGTCTGGTTGATATGTATGCTAAAATTGGAAACCTTGCAGCTGCAGATCTTATGTTTTCCAGTGTCACCATGCCTAATCTAATATGCTGGAACTCAATGCTTGGTGCATATGGTTACCATGGGAAGGCAGAGGAGGCATTTAAGATGTTCAATGATATTTTACAACATGGCCTAAAACCAGATCATGTAACATTTATCTCTCTGCTTGCAGCATGTAGCCACTGTGGTTTGGTCAACCATGGTATATATTTCTGGAATAAAATGAAAGAAAATGGCTTAAAACCAAGCCTGAAGCATTACTCCTGCATGATCACTTTGTTGAGTCGAGCTGGATTGCTGGAGGAAGCTGAACATGTTATAATGGAATCACCCTTTGGAGTTGAATGTCTTCAATTATGGAGAATTTTACTGAGCTCCTGTGTAAGTAAAGGAAACCAGATAATAGGAATACGTGTTGCGAAGCAGGTTTTGGGGATGGATGCAGAAGACAGTGCAACAAATGTACTGCTTTCCAATTTATTTG</genome_strand>
        <mrna_strand>CCCTTGAATCATTAATATCCTCGATAAGGATGTTGTCCTTTGCACTGAAATGATTGCTGGACATTGTAGGATCGGTAATGCTGAGAACTCTATTAAATTGTTCCATGAGATGTTACAGGAAGGCCACAAGGCTGATGAATTTACTCTTACCAGTGCCTTAAGCGTGTGTGCTGAAGTGGCAACAGTGAGGCAGGGTGAAGTGATTCATTCCCTGGCTGCCAAAACAGGCTACAGTGCTGACATGACCGTTTGTGGGAGTCTGGTTGATATGTATGCTAAAATTGGAAACCTTGCAGCTGCAGATCTTATGTTTTCCAGTGTCACCATGCCTAATCTAATATGCTGGAACTCAATGCTTGGTGCATATGGTTACCATGGGAAGGCAGAGGAGGCATTTAAGATGTTCAATGATATTTTACAACATGGCCTAAAACCAGATCATGTAACATTTATCTCTCTGCTTGCAGCATGTAGCCACTGTGGTTTGGTCAACCATGGTATATATTTCTGGAATAAAATGAAAGAAAATGGCTTAAAACCAAGCCTGAAGCATTACTCCTGCATGATCACTTTGTTGAGTCGAGCTGGATTGCTGGAGGAAGCTGAACATGTTATAATGGAATCACCCTTTGGAGTTGAATGTCTTCAATTATGGAGAATTTTACTGAGCTCCTGTGTAAGTAAAGGAAACCAGATAATAGGAATACGTGTTGCGAAGCAGGTTTTGGGGATGGATGCAGAAGACAGTGCAACAAATGTACTGCTTTCCCATTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456396" ref_strand="+" ref_description="SGN-E456396 [cSTS-29-K24]">
      <seq>ctaccaacttatgccaccattgaatgaggcgtcttccatagcagcacttctcctcaataagtgcaacttcataaccttaatcagcaaagcacgccagctccatgccctcatcctcacttccatacccgccacctccagatctccttatgtattcaacaacattctctccatgtacgcccgatgtgggtctatccaagactcacatatcctgttcgacaaaatgcctgagataaatattgtctctttcaacgccctcatttccgcctattctcgataccaccaccttgcccattgggctttccatttgtttgctcaattgcaaagtgagagcataagaccaaatggattaacttttactagccttttaaatgtgtgttcgggtatcaagaatcaggtattaggctctatgcttcactcccagtgtataaagtttggatttttatacgatgtgtgcgttcaaacctctgttcttgggatgtacttaaattgtggagtcttggattgtgcagagaaagtgttttgctacatgcatgataaagattctgtggcttggaatactctattctttgggtatttggaaaatggtaagaccgtggaaggccttcagctgtttggcaccatgttgaggaccggnagttgttcctacgaatttcacttatacgacattggtgagtgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="120308" stop="119030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120008" g_stop="119330" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E456396" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120008" e_stop="119330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAACTTATGCCACCATTGAGTGAGGCCTCTTCCATAGCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCCATTGGACTTTCCATTTGCTTGCTCAATTGCAAAGTGAGAGCCTAAGACCAAATGGGTTAACTTTTACTAGTCTTTTAAATGCGTGTTCAGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCATTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTTTTGGATTGTGCAGAGAAAGTTTTTTGCTACATGTATGATAAAGATTCCGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTAAGACCGTGGAAGGCCTTCAGCTGTTTGGCACCATGTTGAGGACTGG-AGTTGTTCCTACGAATTTCACTTATACGACATTGTTGAGTGCTTGT</genome_strand>
        <mrna_strand>CTACCAACTTATGCCACCATTGAATGAGGCGTCTTCCATAGCAGCACTTCTCCTCAATAAGTGCAACTTCATAACCTTAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCCATACCCGCCACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCCATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGAGATAAATATTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCACCACCTTGCCCATTGGGCTTTCCATTTGTTTGCTCAATTGCAAAGTGAGAGCATAAGACCAAATGGATTAACTTTTACTAGCCTTTTAAATGTGTGTTCGGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCACTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTCTTGGATTGTGCAGAGAAAGTGTTTTGCTACATGCATGATAAAGATTCTGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTAAGACCGTGGAAGGCCTTCAGCTGTTTGGCACCATGTTGAGGACCGGNAGTTGTTCCTACGAATTTCACTTATACGACATTGGTGAGTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426239" ref_strand="+" ref_description="SGN-E426239 [STM-46-C4]">
      <seq>ctaccaacttatgccaccattgaatgaggcgtcttccatattcagcacttctcctcaataagtgcaacttcataaccttaatcagcaaagcacgccagctccatgccctcatcctcacttccatacccgccacctccagatctccttatgtattcaacaacattctctccatgtacgcccgatgtgggtctatccaagactcacatatcctgttcgacaaaatgcctgagataaatattgtctctttcaacgccctcatttccgcctattctcgataccaccaccttgcccattgggctttccatttgtttgctcaattgcaaagtgagagcataagaccaaatggattaacttttactagccttttaaatgtgtgttcgggtatcaagaatcaggtattaggctctatgcttcactcccagtgtataaagtttggatttttatacgatgtgtgcgttcaaacctctgttcttgggatgtacttaaattgtggagtcttggattgtgcagagaaagtgttttgctacatgcatgataaagattctgtggcttggaatactctattctttgggtatttggaaaatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="120308" stop="119122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120008" g_stop="119422" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E426239" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120008" e_stop="119422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAACTTATGCCACCATTGAGTGAGGCCTCTTCCATA-GCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCCATTGGACTTTCCATTTGCTTGCTCAATTGCAAAGTGAGAGCCTAAGACCAAATGGGTTAACTTTTACTAGTCTTTTAAATGCGTGTTCAGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCATTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTTTTGGATTGTGCAGAGAAAGTTTTTTGCTACATGTATGATAAAGATTCCGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTA</genome_strand>
        <mrna_strand>CTACCAACTTATGCCACCATTGAATGAGGCGTCTTCCATATTCAGCACTTCTCCTCAATAAGTGCAACTTCATAACCTTAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCCATACCCGCCACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCCATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGAGATAAATATTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCACCACCTTGCCCATTGGGCTTTCCATTTGTTTGCTCAATTGCAAAGTGAGAGCATAAGACCAAATGGATTAACTTTTACTAGCCTTTTAAATGTGTGTTCGGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCACTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTCTTGGATTGTGCAGAGAAAGTGTTTTGCTACATGCATGATAAAGATTCTGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449647" ref_strand="+" ref_description="SGN-E449647 [cSTS-7-I15]">
      <seq>caacttatgccaccattgaatgaggcgtcttccatagcagcacttctcctcaataagtgcaacttcataaccttaatcagcaaagcacgccagctccatgccctcatcctcacttccatacccgccacctccagatctccttatgtattcaacaacattctctccatgtacgcccgatgtgggtctatccaagactcacatatcctgttcgacaaaatgcctgagagaaatattgtctctttcaacgccctcatttccgcctattctcgataccaccaccttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="120304" stop="119419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120004" g_stop="119719" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="SGN-E449647" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120004" e_stop="119719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTATGCCACCATTGAGTGAGGCCTCTTCCATAGCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCC</genome_strand>
        <mrna_strand>CAACTTATGCCACCATTGAATGAGGCGTCTTCCATAGCAGCACTTCTCCTCAATAAGTGCAACTTCATAACCTTAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCCATACCCGCCACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCCATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGAGAGAAATATTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCACCACCTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546244" ref_strand="+" ref_description="SGN-E546244 [TUS-69-I4]">
      <seq>ttaaatataagatgttggtatgaatttcttctcaactctttctcattcactagcatctgtagctgttccgttcaattcaagtccatttccttctaatactaaataatttgtcttttgaggcaaaacagggggttctctacacctagaagttctctaaatctcacatccacttgcactgtatttaatattaagagggatttanncccttctttgatgttgcattcagtctaaaatattccaattagcccattaggtggatatgatgaggggttcttgttcagtgcgtttgctctaataatcatttcttccatttatgctccttatgttatttacangcggtgtgatagtgtgataggtatatttaaaattttatttgaaatatcatgcaccaatgtgatcattaactgagtcgagtttgtggttgcactaactgtccattttacagatactcatgattcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="121855" stop="122906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122155" g_stop="122606" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E546244" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122155" e_stop="122606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGCAGCCGTTCTGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAATCAGGGGGTACTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAAAATTAAGAGGGATTTA--CCCTTCTTTGATGTTGCATTCAGTCTAAATTATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCTTTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTCTGTTATTTACA------GTG---GTGTGATAGGTATATTTAAAATTTTATTTGAAAAATAATGCACCAATGTGATCATTAACTGAGTTGTGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGACTT</genome_strand>
        <mrna_strand>TTAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGTAGCTGTTCCGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAAACAGGGGGTTCTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAATATTAAGAGGGATTTANNCCCTTCTTTGATGTTGCATTCAGTCTAAAATATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCAGTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTATGTTATTTACANGCGGTGTGATAGTGTGATAGGTATATTTAAAATTTTATTTGAAATATCATGCACCAATGTGATCATTAACTGAGTCGAGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358554" ref_strand="+" ref_description="SGN-E358554 [cLHT-22-H17]">
      <seq>taaatataagatgttggtatgaatttcttctgaactctgtctcattcactagcatctgtagctgttccgttcaattcaagtccatttccttctaatactaaataatttgtcttttgaggcaaaacagggggttctctacacctagaagttctctaaatctcacatccacttgcactgtatttaatattaagagggatttacccttctttgatgttgcattcagtctaaaatattccaattagcccattaggtggatatgatgaggggttcttgttcagtgcgtttgctctaataatcatttcttccatttatgctccttatgttatttacagcggtgtgatagtgtgataggtatatttaaaattttatttgaaatatcatgcaccaatgtgatcattaactgagtcgagtttgtggttgcactaactgtccattttacagatactcatgattcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="121856" stop="122904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122156" g_stop="122604" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="SGN-E358554" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122156" e_stop="122604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGCAGCCGTTCTGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAATCAGGGGGTACTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAAAATTAAGAGGGATTTACCCTTCTTTGATGTTGCATTCAGTCTAAATTATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCTTTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTCTGTTATTTACA-----GTG---GTGTGATAGGTATATTTAAAATTTTATTTGAAAAATAATGCACCAATGTGATCATTAACTGAGTTGTGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGAC</genome_strand>
        <mrna_strand>TAAATATAAGATGTTGGTATGAATTTCTTCTGAACTCTGTCTCATTCACTAGCATCTGTAGCTGTTCCGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAAACAGGGGGTTCTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAATATTAAGAGGGATTTACCCTTCTTTGATGTTGCATTCAGTCTAAAATATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCAGTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTATGTTATTTACAGCGGTGTGATAGTGTGATAGGTATATTTAAAATTTTATTTGAAATATCATGCACCAATGTGATCATTAACTGAGTCGAGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>52</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2106" PGL_stop="1571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2106" e_stop="1571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2106" e_stop="1571" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2106" stop="1632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2105" stop="1571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2104" stop="1645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAA</gDNA_template>
            <first_frame> K  S  K  N  L  R  S  L  S  L  R  M  *  I  K  V  A  R  M  E  T  L  *  *  V  V  S  S  I  *  N  H  R  L  I  T  K  I  L  T  K  M  L  C  *  G  D  F  V  F  T  K  F  V  Q  S  C  R  V  Y  W  T  Q  G  I  M  I  I  T  S  T  S  G  *  N  R  A  T  F  S  A  P  P  R  P  S  L  S  L  F  L  S  S  V  P  K  I  *  S  N  D  E  F  N  F  N  I  K  Y  I  A  I  I  I  I  L  L  V  I  E  K  F  P  I  S  L  R  F  S  N  I  Y  *  Y  K  L  N  H  V  N  I  A  S  F  S  V  *  I  I  M  H  F  S  R  V  S  A  L  S  N  K  I  E  Y  Q  T  C  V  P  S  N  H  V  L  H  I  N  W   </first_frame>
            <second_frame>  R  A  K  T  F  V  L  *  V  S  E  C  E  S  R  W  R  E  W  K  L  C  N  K  *  *  A  L  F  E  I  I  D  *  S  P  K  S  *  Q  K  C  C  V  E  E  T  S  F  S  Q  S  S  C  K  V  A  G  S  I  G  H  K  E  L  *  L  L  R  A  Q  V  V  R  T  G  R  R  F  L  L  P  L  G  P  L  S  L  C  F  C  L  L  C  L  R  F  K  V  M  T  S  S  I  L  T  S  N  I  L  Q  S  S  S  Y  Y  W  L  *  R  N  F  L  F  L  *  G  L  V  T  Y  I  S  I  S  *  T  M  *  I  S  L  P  F  L  F  R  *  *  C  T  F  L  V  F  L  L  F  Q  I  K  L  S  I  K  L  V  F  R  Q  T  T  Y  F  T  *  I  G  </second_frame>
            <third_frame>   E  Q  K  P  S  F  S  E  S  Q  N  V  N  Q  G  G  E  N  G  N  S  V  I  S  S  E  L  Y  L  K  S  S  T  D  H  Q  N  L  D  K  N  V  V  L  R  R  L  R  F  H  K  V  R  A  K  L  Q  G  L  L  D  T  R  N  Y  D  Y  Y  E  H  K  W  L  E  Q  G  D  V  F  C  S  P  *  A  L  S  L  S  V  F  V  F  C  A  *  D  L  K  *  *  R  V  Q  F  *  H  Q  I  Y  C  N  H  H  H  I  I  G  Y  R  E  I  S  Y  F  F  K  V  *  *  H  I  L  V  *  V  E  P  C  K  Y  R  F  L  F  C  L  D  N  N  A  L  F  S  C  F  C  S  F  K  *  N  *  V  S  N  L  C  S  V  K  P  R  T  S  H  K  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2104" stop="1856"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKPSFSESQNVNQGGENGNSVISSELYLKSSTDHQNLDKNVVLRRLRFHKVRAKLQGLLDTRNYDYYEHKWLEQGDVFCSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3244" PGL_stop="2875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3244" e_stop="2875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="3244" e_stop="2875" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3244" stop="2875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3242" stop="2945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATTTCCCTCCTTGTACCAAACATCCTTACCTCTCTGTCTCTTGAGTTTCTGTGGGCGGAGCCTAAATTTGAAG</gDNA_template>
            <first_frame> F  Y  V  V  R  Y  K  K  I  W  L  L  R  Y  P  K  R  K  *  A  V  M  I  K  I  V  S  R  Q  R  E  *  *  V  A  N  S  I  *  S  H  R  P  M  K  I  L  T  K  M  L  C  *  G  D  F  V  T  I  N  T  C  K  R  F  V  E  I  *  R  L  Y  W  T  V  I  R  Q  G  I  I  M  S  T  S  G  L  N  R  A  T  F  S  A  P  L  S  I  Y  I  S  L  L  V  P  N  I  L  T  S  L  S  L  E  F  L  W  A  E  P  K  F  E  </first_frame>
            <second_frame>  F  M  L  *  D  T  K  K  Y  G  F  C  D  I  Q  R  E  N  R  Q  *  *  S  R  *  C  R  D  R  E  S  N  K  *  P  T  L  F  E  V  I  V  P  *  K  S  *  Q  K  C  C  A  E  E  T  S  S  P  *  I  L  A  K  G  S  W  K  F  E  D  S  I  G  Q  L  F  D  K  G  L  L  *  A  Q  V  A  *  T  G  R  R  F  L  L  P  L  A  Y  I  F  P  S  L  Y  Q  T  S  L  P  L  C  L  L  S  F  C  G  R  S  L  N  L  K </second_frame>
            <third_frame>   L  C  C  E  I  Q  K  N  M  A  F  A  I  S  K  E  K  I  G  S  D  D  Q  D  S  V  E  T  E  R  V  I  S  S  Q  L  Y  L  K  S  S  S  H  E  N  L  D  K  N  V  V  L  R  R  L  R  H  H  K  Y  L  Q  K  V  R  G  N  L  K  T  L  L  D  S  Y  S  T  R  D  Y  Y  E  H  K  W  L  E  Q  G  D  V  F  C  S  P  *  H  I  Y  F  P  P  C  T  K  H  P  Y  L  S  V  S  *  V  S  V  G  G  A  *  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3242" stop="2955"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCCEIQKNMAFAISKEKIGSDDQDSVETERVISSQLYLKSSSHENLDKNVVLRRLRHHKYLQKVRGNLKTLLDSYSTRDYYEHKWLEQGDVFCSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="3969" PGL_stop="3754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3969" e_stop="3754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3969" e_stop="3754" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3969" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3969" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3955" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</gDNA_template>
            <first_frame> N  I  F  L  S  *  S  F  F  *  E  K  E  *  I  A  S  A  F  C  S  Y  E  R  I  I  D  D  P  S  P  F  V  F  I  P  N  V  Y  N  K  A  K  I  N  K  F  F  F  G  L  P  V  C  L  H  K  N  L  A  Q  K  L  S  T  F  Y  *  T  L  Y  E </first_frame>
            <second_frame>  T  F  S  C  L  K  A  F  S  R  K  K  N  K  *  Q  V  H  F  V  H  M  R  G  *  *  M  I  L  P  L  S  F  L  F  Q  M  Y  I  T  K  Q  K  *  I  N  F  F  L  V  F  L  Y  A  Y  T  R  I  *  H  R  N  F  L  H  S  I  E  H  C  M   </second_frame>
            <third_frame>   H  F  L  V  L  K  L  F  L  G  K  R  I  N  S  K  C  I  L  F  I  *  E  D  N  R  *  S  F  P  F  R  F  Y  S  K  C  I  *  Q  S  K  N  K  *  I  F  F  W  S  S  C  M  P  T  Q  E  F  S  T  E  T  F  Y  I  L  L  N  I  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0226F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="8559" PGL_stop="4606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7824" e_stop="7716"/>
            <exon e_start="7635" e_stop="7487"/>
            <exon e_start="6635" e_stop="6553"/>
            <exon e_start="6468" e_stop="6373"/>
            <exon e_start="6225" e_stop="6103"/>
            <exon e_start="5142" e_stop="5059"/>
            <exon e_start="4747" e_stop="4606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.829" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.992"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="0.988"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7824" e_stop="7716" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.829" acc_prob="0.883">
            <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7635" e_stop="7487" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.848">
            <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6635" e_stop="6553" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.752">
            <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6468" e_stop="6373" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6372" i_stop="6226" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="6225" e_stop="6103" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="6102" i_stop="5143" i_length="960"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="5142" e_stop="5059" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5058" i_stop="4748" i_length="311"/>
          </intron>
          <exon e_serial="7" e_score="0.965">
            <gDNA_exon_boundary e_start="4747" e_stop="4606" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7824" stop="7716"/>
              <exon start="7635" stop="7487"/>
              <exon start="6635" stop="6553"/>
              <exon start="6468" stop="6373"/>
              <exon start="6225" stop="6103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7824" stop="7716"/>
              <exon start="7635" stop="7487"/>
              <exon start="6635" stop="6553"/>
              <exon start="6468" stop="6447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6633" stop="6553"/>
              <exon start="6468" stop="6373"/>
              <exon start="6225" stop="6103"/>
              <exon start="5142" stop="5059"/>
              <exon start="4747" stop="4606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG : GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG : GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT : TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG : GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG : CTATACATTGAAGGGTATCTCCAAGCCATGTTAGATACATTGTATAAGCAAGAATACCTGAGAGTCAGAGTCATTGACAACCAG : GTTATCCTGAAGAACCTACCACCAAGCAGTTCACTTATAGAAGAGATTGTGGAACGTGTGAAGGGATTTCTTGTTAGCAAAACATTGTTGAAAGGAGATACTTCAACAGCTGCTCGTCCCTTGCGTCACATGAGGGGGGAAC</gDNA_template>
            <first_frame> R  Y  L  L  S  K  I  *  P  *  S  S  M  A  S  L  *  L  M  H  W  S  L  C  G  S  C  Q  L  N  V  P  N  I  I  L   : G  M  Q  *  E  Q  Y  T  L  Q  R  E  V  P  C  C  H  Q  L  L  L  L  Y  L  T  T  *  L  H  H  L  W  M  F  S  L  I  L  L  L  A  I  L  I  F  L  A  S  Q  L  :  V  L  S  N  S  F  V  S  V  L  M  V  K  S  F  L  E  Q  K  D  T  L  A  I  *  G  K  L :   L  S  Q  Q  D  Q  I  S  C  L  L  L  S  L  K  Y  Q  T  R  F  *  K  E  Q  K  L  V  V  *  M  E  W :   *  M  V  S  I  K  E  Y  L  N  W  Q  W  N  L  H  Y  W  G  V  L  S  W  K  V  A  L  I  E  K  L  G  L  I  E  V  L  G  L  M  S :   Y  T  L  K  G  I  S  K  P  C  *  I  H  C  I  S  K  N  T  *  E  S  E  S  L  T  T  R :   L  S  *  R  T  Y  H  Q  A  V  H  L  *  K  R  L  W  N  V  *  R  D  F  L  L  A  K  H  C  *  K  E  I  L  Q  Q  L  L  V  P  C  V  T  *  G  G  N </first_frame>
            <second_frame>  D  T  S  C  Q  K  Y  D  R  R  A  Q  W  H  P  C  N  S  C  I  G  H  F  A  G  V  V  N  *  M  C  P  T  L  F  L  :  V  C  N  E  S  S  I  H  C  K  G  K  S  L  A  A  T  S  F  C  F  Y  I  *  R  L  S  F  I  I  S  G  C  F  L  *  S  F  Y  W  P  S  *  S  S  W  P  H  N  W :   Y  F  Q  T  H  S  *  V  Y  *  W  *  R  V  F  W  N  K  K  I  L  W  R  S  R  E  N   : F  *  V  S  R  I  K  Y  P  V  C  C  C  H  *  N  I  R  L  G  S  E  R  S  R  S  *  W  F  K  W  N   : G  E  W  F  P  S  R  N  T  *  I  G  N  G  T  Y  I  T  G  E  C  F  H  G  R  W  P  *  S  K  N  W  A  *  S  K  S  W  G  *  *   : A  I  H  *  R  V  S  P  S  H  V  R  Y  I  V  *  A  R  I  P  E  S  Q  S  H  *  Q  P   : G  Y  P  E  E  P  T  T  K  Q  F  T  Y  R  R  D  C  G  T  C  E  G  I  S  C  *  Q  N  I  V  E  R  R  Y  F  N  S  C  S  S  L  A  S  H  E  G  G   </second_frame>
            <third_frame>   I  P  P  V  K  N  M  T  V  E  L  N  G  I  L  V  T  H  A  L  V  T  L  R  E  L  S  I  K  C  A  Q  H  Y  S  W :   Y  A  M  R  A  V  Y  I  A  K  G  S  P  L  L  P  P  A  F  A  S  I  F  D  D  L  A  S  S  S  L  D  V  F  F  D  P  S  T  G  H  L  N  L  P  G  L  T  I   : G  T  F  K  L  I  R  K  C  I  D  G  K  E  F  S  G  T  K  R  Y  F  G  D  L  G  K  T  :  F  K  S  A  G  S  N  I  L  F  A  A  V  T  E  I  S  D  S  V  L  K  G  A  E  A  S  G  L  N  G  M  :  V  N  G  F  H  Q  G  I  L  K  L  A  M  E  P  T  L  L  G  S  A  F  M  E  G  G  P  D  R  K  I  G  L  D  R  S  P  G  V  D  E  :  L  Y  I  E  G  Y  L  Q  A  M  L  D  T  L  Y  K  Q  E  Y  L  R  V  R  V  I  D  N  Q  :  V  I  L  K  N  L  P  P  S  S  S  L  I  E  E  I  V  E  R  V  K  G  F  L  V  S  K  T  L  L  K  G  D  T  S  T  A  A  R  P  L  R  H  M  R  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7822" stop="7716"/>
                    <exon start="7635" stop="7487"/>
                    <exon start="6635" stop="6553"/>
                    <exon start="6468" stop="6373"/>
                    <exon start="6225" stop="6103"/>
                    <exon start="5142" stop="5059"/>
                    <exon start="4747" stop="4607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPPVKNMTVELNGILVTHALVTLRELSIKCAQHYSWYAMRAVYIAKGSPLLPPAFASIFDDLASSSLDVFFDPSTGHLNLPGLTIGTFKLIRKCIDGKEFSGTKRYFGDLGKTFKSAGSNILFAAVTEISDSVLKGAEASGLNGMVNGFHQGILKLAMEPTLLGSAFMEGGPDRKIGLDRSPGVDELYIEGYLQAMLDTLYKQEYLRVRVIDNQVILKNLPPSSSLIEEIVERVKGFLVSKTLLKGDTSTAARPLRHMRGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8559" e_stop="8446"/>
            <exon e_start="8344" e_stop="8255"/>
            <exon e_start="7822" e_stop="7716"/>
            <exon e_start="7635" e_stop="7487"/>
            <exon e_start="6635" e_stop="6553"/>
            <exon e_start="6468" e_stop="6373"/>
            <exon e_start="6225" e_stop="6103"/>
            <exon e_start="5142" e_stop="5059"/>
            <exon e_start="4747" e_stop="4606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.967"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="0.988"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8559" e_stop="8446" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.652">
            <gDNA_intron_boundary i_start="8445" i_stop="8345" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8344" e_stop="8255" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.868" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8254" i_stop="7823" i_length="432"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7822" e_stop="7716" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="0.883">
            <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7635" e_stop="7487" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.848">
            <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6635" e_stop="6553" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.752">
            <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6468" e_stop="6373" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6372" i_stop="6226" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="0.967">
            <gDNA_exon_boundary e_start="6225" e_stop="6103" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="6102" i_stop="5143" i_length="960"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="5142" e_stop="5059" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5058" i_stop="4748" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="0.965">
            <gDNA_exon_boundary e_start="4747" e_stop="4606" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8559" stop="8446"/>
              <exon start="8344" stop="8255"/>
              <exon start="7822" stop="7716"/>
              <exon start="7635" stop="7487"/>
              <exon start="6635" stop="6553"/>
              <exon start="6468" stop="6421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8559" stop="8446"/>
              <exon start="8344" stop="8255"/>
              <exon start="7822" stop="7716"/>
              <exon start="7635" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6633" stop="6553"/>
              <exon start="6468" stop="6373"/>
              <exon start="6225" stop="6103"/>
              <exon start="5142" stop="5059"/>
              <exon start="4747" stop="4606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG : GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG : ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG : GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG : GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT : TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG : GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG : CTATACATTGAAGGGTATCTCCAAGCCATGTTAGATACATTGTATAAGCAAGAATACCTGAGAGTCAGAGTCATTGACAACCAG : GTTATCCTGAAGAACCTACCACCAAGCAGTTCACTTATAGAAGAGATTGTGGAACGTGTGAAGGGATTTCTTGTTAGCAAAACATTGTTGAAAGGAGATACTTCAACAGCTGCTCGTCCCTTGCGTCACATGAGGGGGGAAC</gDNA_template>
            <first_frame> L  D  E  E  T  L  M  R  I  V  P  F  W  R  T  S  L  R  D  T  N  T  P  S  Q  K  Y  Y  I  D  H  F  E  I  H  P  V  K  :  V  V  A  S  F  L  P  G  E  S  Y  A  N  H  S  S  T  Q  E  T  L  R  S  L  L  H  S  V  I  K  :  I  P  P  V  K  N  M  T  V  E  L  N  G  I  L  V  T  H  A  L  V  T  L  R  E  L  S  I  K  C  A  Q  H  Y  S  W :   Y  A  M  R  A  V  Y  I  A  K  G  S  P  L  L  P  P  A  F  A  S  I  F  D  D  L  A  S  S  S  L  D  V  F  F  D  P  S  T  G  H  L  N  L  P  G  L  T  I   : G  T  F  K  L  I  R  K  C  I  D  G  K  E  F  S  G  T  K  R  Y  F  G  D  L  G  K  T  :  F  K  S  A  G  S  N  I  L  F  A  A  V  T  E  I  S  D  S  V  L  K  G  A  E  A  S  G  L  N  G  M  :  V  N  G  F  H  Q  G  I  L  K  L  A  M  E  P  T  L  L  G  S  A  F  M  E  G  G  P  D  R  K  I  G  L  D  R  S  P  G  V  D  E  :  L  Y  I  E  G  Y  L  Q  A  M  L  D  T  L  Y  K  Q  E  Y  L  R  V  R  V  I  D  N  Q  :  V  I  L  K  N  L  P  P  S  S  S  L  I  E  E  I  V  E  R  V  K  G  F  L  V  S  K  T  L  L  K  G  D  T  S  T  A  A  R  P  L  R  H  M  R  G  E  </first_frame>
            <second_frame>  S  M  K  R  H  *  *  E  L  F  L  S  G  E  R  P  S  E  I  Q  I  L  Q  V  K  S  I  T  L  I  I  L  R  Y  I  L  L  R :   L  W  Q  A  F  F  Q  G  N  L  M  L  T  I  A  P  R  K  R  H  *  D  L  Y  F  T  V  L  *  R :   Y  L  L  S  K  I  *  P  *  S  S  M  A  S  L  *  L  M  H  W  S  L  C  G  S  C  Q  L  N  V  P  N  I  I  L   : G  M  Q  *  E  Q  Y  T  L  Q  R  E  V  P  C  C  H  Q  L  L  L  L  Y  L  T  T  *  L  H  H  L  W  M  F  S  L  I  L  L  L  A  I  L  I  F  L  A  S  Q  L  :  V  L  S  N  S  F  V  S  V  L  M  V  K  S  F  L  E  Q  K  D  T  L  A  I  *  G  K  L :   L  S  Q  Q  D  Q  I  S  C  L  L  L  S  L  K  Y  Q  T  R  F  *  K  E  Q  K  L  V  V  *  M  E  W :   *  M  V  S  I  K  E  Y  L  N  W  Q  W  N  L  H  Y  W  G  V  L  S  W  K  V  A  L  I  E  K  L  G  L  I  E  V  L  G  L  M  S :   Y  T  L  K  G  I  S  K  P  C  *  I  H  C  I  S  K  N  T  *  E  S  E  S  L  T  T  R :   L  S  *  R  T  Y  H  Q  A  V  H  L  *  K  R  L  W  N  V  *  R  D  F  L  L  A  K  H  C  *  K  E  I  L  Q  Q  L  L  V  P  C  V  T  *  G  G  N </second_frame>
            <third_frame>   R  *  R  D  I  N  E  N  C  S  F  L  E  N  V  P  Q  R  Y  K  Y  S  K  S  K  V  L  H  *  S  F  *  D  T  S  C  *   : G  C  G  K  L  S  S  R  G  I  L  C  *  P  *  L  H  A  R  D  T  K  I  F  T  S  Q  C  Y  K   : D  T  S  C  Q  K  Y  D  R  R  A  Q  W  H  P  C  N  S  C  I  G  H  F  A  G  V  V  N  *  M  C  P  T  L  F  L  :  V  C  N  E  S  S  I  H  C  K  G  K  S  L  A  A  T  S  F  C  F  Y  I  *  R  L  S  F  I  I  S  G  C  F  L  *  S  F  Y  W  P  S  *  S  S  W  P  H  N  W :   Y  F  Q  T  H  S  *  V  Y  *  W  *  R  V  F  W  N  K  K  I  L  W  R  S  R  E  N   : F  *  V  S  R  I  K  Y  P  V  C  C  C  H  *  N  I  R  L  G  S  E  R  S  R  S  *  W  F  K  W  N   : G  E  W  F  P  S  R  N  T  *  I  G  N  G  T  Y  I  T  G  E  C  F  H  G  R  W  P  *  S  K  N  W  A  *  S  K  S  W  G  *  *   : A  I  H  *  R  V  S  P  S  H  V  R  Y  I  V  *  A  R  I  P  E  S  Q  S  H  *  Q  P   : G  Y  P  E  E  P  T  T  K  Q  F  T  Y  R  R  D  C  G  T  C  E  G  I  S  C  *  Q  N  I  V  E  R  R  Y  F  N  S  C  S  S  L  A  S  H  E  G  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8559" stop="8446"/>
                    <exon start="8344" stop="8255"/>
                    <exon start="7822" stop="7716"/>
                    <exon start="7635" stop="7487"/>
                    <exon start="6635" stop="6553"/>
                    <exon start="6468" stop="6373"/>
                    <exon start="6225" stop="6103"/>
                    <exon start="5142" stop="5059"/>
                    <exon start="4747" stop="4607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDEETLMRIVPFWRTSLRDTNTPSQKYYIDHFEIHPVKVVASFLPGESYANHSSTQETLRSLLHSVIKIPPVKNMTVELNGILVTHALVTLRELSIKCAQHYSWYAMRAVYIAKGSPLLPPAFASIFDDLASSSLDVFFDPSTGHLNLPGLTIGTFKLIRKCIDGKEFSGTKRYFGDLGKTFKSAGSNILFAAVTEISDSVLKGAEASGLNGMVNGFHQGILKLAMEPTLLGSAFMEGGPDRKIGLDRSPGVDELYIEGYLQAMLDTLYKQEYLRVRVIDNQVILKNLPPSSSLIEEIVERVKGFLVSKTLLKGDTSTAARPLRHMRGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46184" PGL_stop="46910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46184" e_stop="46910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="46184" e_stop="46910" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46184" stop="46910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTTTGTACTTCTTCTTTTCATGAGGAAATAGCACAATGAGGAATTCAAGAAAAAGCAAAATGACAACAGAAGAGAACAGCCATCCCAAACAAGCGTTACATGATCCTAATGAAGATGAATATTCTTTTCGAATAAGCCACACATCCGAAACTAGCCATCTCCCTCCTCGATTAAGTTCTGATTATAGCTCTCCTCTTGCAACATCTCCGACAAGGGATTCATCAGCATCTCCATATTTAGATCCCTATTGGGACCAGAGTCACCAGACATCACCATTATCTAGATCTCCATGGACATCTCACGTTGAGAATAATTATTCCTATACAGGGCTCATGGGGTCCCTCGTTCGCGAAGAAGGACATATATATTCTTTAGCAGCGTCAGGGGATTTGTTATACACGGGATCTGATAGTAAGAATATAAGGGTGTGGAAGAATCACAAAGAATTTTCCGGATTCAAATCAAATAGTGGATTGGTGAAGGCAATTATTTTGTGTGGAGAACGAATTTTCACGGGTCATCAGGACGGGAAGATCCGAGTCTGGAAGGTTTCTGGTAAGGATTCAAGCGTTTACAATCGAATTGGAACTATGCCAACTTTAATGGCTTATATAAAAACTTCAATGAAACCAAGCAATTACATCCAAACAAGGCGTAATAGAAATACCGTGTGGATAAAGCATTTTGATGCCATTTCATGCCTTAGCATGAGCGAGGACCAAA</gDNA_template>
            <first_frame> S  F  L  Y  F  F  F  S  *  G  N  S  T  M  R  N  S  R  K  S  K  M  T  T  E  E  N  S  H  P  K  Q  A  L  H  D  P  N  E  D  E  Y  S  F  R  I  S  H  T  S  E  T  S  H  L  P  P  R  L  S  S  D  Y  S  S  P  L  A  T  S  P  T  R  D  S  S  A  S  P  Y  L  D  P  Y  W  D  Q  S  H  Q  T  S  P  L  S  R  S  P  W  T  S  H  V  E  N  N  Y  S  Y  T  G  L  M  G  S  L  V  R  E  E  G  H  I  Y  S  L  A  A  S  G  D  L  L  Y  T  G  S  D  S  K  N  I  R  V  W  K  N  H  K  E  F  S  G  F  K  S  N  S  G  L  V  K  A  I  I  L  C  G  E  R  I  F  T  G  H  Q  D  G  K  I  R  V  W  K  V  S  G  K  D  S  S  V  Y  N  R  I  G  T  M  P  T  L  M  A  Y  I  K  T  S  M  K  P  S  N  Y  I  Q  T  R  R  N  R  N  T  V  W  I  K  H  F  D  A  I  S  C  L  S  M  S  E  D  Q  </first_frame>
            <second_frame>  H  F  C  T  S  S  F  H  E  E  I  A  Q  *  G  I  Q  E  K  A  K  *  Q  Q  K  R  T  A  I  P  N  K  R  Y  M  I  L  M  K  M  N  I  L  F  E  *  A  T  H  P  K  L  A  I  S  L  L  D  *  V  L  I  I  A  L  L  L  Q  H  L  R  Q  G  I  H  Q  H  L  H  I  *  I  P  I  G  T  R  V  T  R  H  H  H  Y  L  D  L  H  G  H  L  T  L  R  I  I  I  P  I  Q  G  S  W  G  P  S  F  A  K  K  D  I  Y  I  L  *  Q  R  Q  G  I  C  Y  T  R  D  L  I  V  R  I  *  G  C  G  R  I  T  K  N  F  P  D  S  N  Q  I  V  D  W  *  R  Q  L  F  C  V  E  N  E  F  S  R  V  I  R  T  G  R  S  E  S  G  R  F  L  V  R  I  Q  A  F  T  I  E  L  E  L  C  Q  L  *  W  L  I  *  K  L  Q  *  N  Q  A  I  T  S  K  Q  G  V  I  E  I  P  C  G  *  S  I  L  M  P  F  H  A  L  A  *  A  R  T  K </second_frame>
            <third_frame>   I  F  V  L  L  L  F  M  R  K  *  H  N  E  E  F  K  K  K  Q  N  D  N  R  R  E  Q  P  S  Q  T  S  V  T  *  S  *  *  R  *  I  F  F  S  N  K  P  H  I  R  N  *  P  S  P  S  S  I  K  F  *  L  *  L  S  S  C  N  I  S  D  K  G  F  I  S  I  S  I  F  R  S  L  L  G  P  E  S  P  D  I  T  I  I  *  I  S  M  D  I  S  R  *  E  *  L  F  L  Y  R  A  H  G  V  P  R  S  R  R  R  T  Y  I  F  F  S  S  V  R  G  F  V  I  H  G  I  *  *  *  E  Y  K  G  V  E  E  S  Q  R  I  F  R  I  Q  I  K  *  W  I  G  E  G  N  Y  F  V  W  R  T  N  F  H  G  S  S  G  R  E  D  P  S  L  E  G  F  W  *  G  F  K  R  L  Q  S  N  W  N  Y  A  N  F  N  G  L  Y  K  N  F  N  E  T  K  Q  L  H  P  N  K  A  *  *  K  Y  R  V  D  K  A  F  *  C  H  F  M  P  *  H  E  R  G  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46211" stop="46909"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNSTMRNSRKSKMTTEENSHPKQALHDPNEDEYSFRISHTSETSHLPPRLSSDYSSPLATSPTRDSSASPYLDPYWDQSHQTSPLSRSPWTSHVENNYSYTGLMGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNHKEFSGFKSNSGLVKAIILCGERIFTGHQDGKIRVWKVSGKDSSVYNRIGTMPTLMAYIKTSMKPSNYIQTRRNRNTVWIKHFDAISCLSMSEDQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47133" PGL_stop="47940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47133" e_stop="47940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="47133" e_stop="47940" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47133" stop="47940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAAGAATGCGCTGTAACAGCCTTAGCTGTTGACCCTTCATCCAATTTCCTATATTGTGGCTCTTCAGATGGGCTAGTCAATTTTTGGCAAGGCGACAAGCTTCTATCTCATGGAGGAGTGTTAAGGGGTCATAAACTTGCAACACTCTGTTTAGCAGCGGCGGGGAATTTAATTTTCAGTGGATCAGCTGATAACAATATTTGCGTGTGGAAAAGGGACGGAGCAGAACATATATGTTTATCAGTGTTGAGCGGACATTCTGGTCCGGTTAAATGCTTGGCTGTTGAAGAGGAACAACAACAAAAAGGTAGTGATAAACAATTTATTGTTTACAGCGGGAGCCTCGATAAATCAGTGAAGATTTGGAGGATATCGTCGCAGTTGGTACCAAATCAGGCGGAAGTGGGGATGAGTCCACCGCAAAATTTTCCTACATCAAATAGCTGCAGAGTTAGCCAAAGGAGAAAATAGCAATGGAGACTTTTGACAATTGTATAGACGCAGCTAGCTTTGGAAATTGACCAAGTAAGAAATTATCTACATGTTTTGCTAGCTTTGCAGAGAAATTTGTAAATGAAAACTTTATTTGTTTTGTATTTTCACCCATTGGAGTTCGACACAAATGTCAATGGCTGTTGATGTATTTGAATTTGCTCTTGTTTCCGTCTATTTGACTGACAACAAAGTAACAACAGATGAGTTATCTACATTTCTTGTATAGTATGATGATCATCTTCATTTCTATTCCCATATGTAACTTTGACACTTCAATGTGAAATCTCTTGAATTTGAACAAAGTGAAACTA</gDNA_template>
            <first_frame> S  K  N  A  L  *  Q  P  *  L  L  T  L  H  P  I  S  Y  I  V  A  L  Q  M  G  *  S  I  F  G  K  A  T  S  F  Y  L  M  E  E  C  *  G  V  I  N  L  Q  H  S  V  *  Q  R  R  G  I  *  F  S  V  D  Q  L  I  T  I  F  A  C  G  K  G  T  E  Q  N  I  Y  V  Y  Q  C  *  A  D  I  L  V  R  L  N  A  W  L  L  K  R  N  N  N  K  K  V  V  I  N  N  L  L  F  T  A  G  A  S  I  N  Q  *  R  F  G  G  Y  R  R  S  W  Y  Q  I  R  R  K  W  G  *  V  H  R  K  I  F  L  H  Q  I  A  A  E  L  A  K  G  E  N  S  N  G  D  F  *  Q  L  Y  R  R  S  *  L  W  K  L  T  K  *  E  I  I  Y  M  F  C  *  L  C  R  E  I  C  K  *  K  L  Y  L  F  C  I  F  T  H  W  S  S  T  Q  M  S  M  A  V  D  V  F  E  F  A  L  V  S  V  Y  L  T  D  N  K  V  T  T  D  E  L  S  T  F  L  V  *  Y  D  D  H  L  H  F  Y  S  H  M  *  L  *  H  F  N  V  K  S  L  E  F  E  Q  S  E  T  </first_frame>
            <second_frame>  A  R  M  R  C  N  S  L  S  C  *  P  F  I  Q  F  P  I  L  W  L  F  R  W  A  S  Q  F  L  A  R  R  Q  A  S  I  S  W  R  S  V  K  G  S  *  T  C  N  T  L  F  S  S  G  G  E  F  N  F  Q  W  I  S  *  *  Q  Y  L  R  V  E  K  G  R  S  R  T  Y  M  F  I  S  V  E  R  T  F  W  S  G  *  M  L  G  C  *  R  G  T  T  T  K  R  *  *  *  T  I  Y  C  L  Q  R  E  P  R  *  I  S  E  D  L  E  D  I  V  A  V  G  T  K  S  G  G  S  G  D  E  S  T  A  K  F  S  Y  I  K  *  L  Q  S  *  P  K  E  K  I  A  M  E  T  F  D  N  C  I  D  A  A  S  F  G  N  *  P  S  K  K  L  S  T  C  F  A  S  F  A  E  K  F  V  N  E  N  F  I  C  F  V  F  S  P  I  G  V  R  H  K  C  Q  W  L  L  M  Y  L  N  L  L  L  F  P  S  I  *  L  T  T  K  *  Q  Q  M  S  Y  L  H  F  L  Y  S  M  M  I  I  F  I  S  I  P  I  C  N  F  D  T  S  M  *  N  L  L  N  L  N  K  V  K  L </second_frame>
            <third_frame>   Q  E  C  A  V  T  A  L  A  V  D  P  S  S  N  F  L  Y  C  G  S  S  D  G  L  V  N  F  W  Q  G  D  K  L  L  S  H  G  G  V  L  R  G  H  K  L  A  T  L  C  L  A  A  A  G  N  L  I  F  S  G  S  A  D  N  N  I  C  V  W  K  R  D  G  A  E  H  I  C  L  S  V  L  S  G  H  S  G  P  V  K  C  L  A  V  E  E  E  Q  Q  Q  K  G  S  D  K  Q  F  I  V  Y  S  G  S  L  D  K  S  V  K  I  W  R  I  S  S  Q  L  V  P  N  Q  A  E  V  G  M  S  P  P  Q  N  F  P  T  S  N  S  C  R  V  S  Q  R  R  K  *  Q  W  R  L  L  T  I  V  *  T  Q  L  A  L  E  I  D  Q  V  R  N  Y  L  H  V  L  L  A  L  Q  R  N  L  *  M  K  T  L  F  V  L  Y  F  H  P  L  E  F  D  T  N  V  N  G  C  *  C  I  *  I  C  S  C  F  R  L  F  D  *  Q  Q  S  N  N  R  *  V  I  Y  I  S  C  I  V  *  *  S  S  S  F  L  F  P  Y  V  T  L  T  L  Q  C  E  I  S  *  I  *  T  K  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47135" stop="47605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QECAVTALAVDPSSNFLYCGSSDGLVNFWQGDKLLSHGGVLRGHKLATLCLAAAGNLIFSGSADNNICVWKRDGAEHICLSVLSGHSGPVKCLAVEEEQQQKGSDKQFIVYSGSLDKSVKIWRISSQLVPNQAEVGMSPPQNFPTSNSCRVSQRRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="58898" PGL_stop="58077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58898" e_stop="58897"/>
            <exon e_start="58668" e_stop="58077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.764" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58898" e_stop="58897" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.764" acc_prob="0.788">
            <gDNA_intron_boundary i_start="58896" i_stop="58669" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="58668" e_stop="58077" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58898" stop="58897"/>
              <exon start="58668" stop="58077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CA : TCCATCACCGAGGGCTACATACACTACAGTATCTTACAAAAAATTGCCAAAGCAGAAGCTATATCTTTCTTGTTCTTTAATTGTACAAAAGAACCTACCAGATTAGCCATTTACAAGCCTATTCTGTAAAAATAACTGATTCTACTCGTTCATTGGCAAACGTCTTTTCAGTCATCTGGTCGTCAACTCTGCTCTGTTCTCTTCTTTTACCAAAACATATCAATATCTACAAGTAACACATCTTATGGACATAACTTTTCTTTCAAAAAAGAATTCTTTTGAAGCTCTCATGTGTTCAAGGTGAGAAGGAACTTGCATCAGTGCTGTAAAATGAGTACTCACTCAAACTGAAGTTTAACCGCTCTTCGTCCCACTTGATTATCTCCCTTGCATACTTGAGCGATTCATCCACCGTTTTTGGCTCTAAACCTTTCACTAGAGAAACATACAGCTTCTTGTTAGTGAGAGAAGAAAAGAGCCTCTTGAATTTTACTGCAACGTGATGAAATGCCAACTGGCCCACAGAGGGACTATGGTTGATGCTGCTGGAGTTGCTGTTGGAGCGATGGCGACTTACAAGCGGATGAAAATC</gDNA_template>
            <first_frame> H :   P  S  P  R  A  T  Y  T  T  V  S  Y  K  K  L  P  K  Q  K  L  Y  L  S  C  S  L  I  V  Q  K  N  L  P  D  *  P  F  T  S  L  F  C  K  N  N  *  F  Y  S  F  I  G  K  R  L  F  S  H  L  V  V  N  S  A  L  F  S  S  F  T  K  T  Y  Q  Y  L  Q  V  T  H  L  M  D  I  T  F  L  S  K  K  N  S  F  E  A  L  M  C  S  R  *  E  G  T  C  I  S  A  V  K  *  V  L  T  Q  T  E  V  *  P  L  F  V  P  L  D  Y  L  P  C  I  L  E  R  F  I  H  R  F  W  L  *  T  F  H  *  R  N  I  Q  L  L  V  S  E  R  R  K  E  P  L  E  F  Y  C  N  V  M  K  C  Q  L  A  H  R  G  T  M  V  D  A  A  G  V  A  V  G  A  M  A  T  Y  K  R  M  K  I </first_frame>
            <second_frame>   : I  H  H  R  G  L  H  T  L  Q  Y  L  T  K  N  C  Q  S  R  S  Y  I  F  L  V  L  *  L  Y  K  R  T  Y  Q  I  S  H  L  Q  A  Y  S  V  K  I  T  D  S  T  R  S  L  A  N  V  F  S  V  I  W  S  S  T  L  L  C  S  L  L  L  P  K  H  I  N  I  Y  K  *  H  I  L  W  T  *  L  F  F  Q  K  R  I  L  L  K  L  S  C  V  Q  G  E  K  E  L  A  S  V  L  *  N  E  Y  S  L  K  L  K  F  N  R  S  S  S  H  L  I  I  S  L  A  Y  L  S  D  S  S  T  V  F  G  S  K  P  F  T  R  E  T  Y  S  F  L  L  V  R  E  E  K  S  L  L  N  F  T  A  T  *  *  N  A  N  W  P  T  E  G  L  W  L  M  L  L  E  L  L  L  E  R  W  R  L  T  S  G  *  K   </second_frame>
            <third_frame>   :  S  I  T  E  G  Y  I  H  Y  S  I  L  Q  K  I  A  K  A  E  A  I  S  F  L  F  F  N  C  T  K  E  P  T  R  L  A  I  Y  K  P  I  L  *  K  *  L  I  L  L  V  H  W  Q  T  S  F  Q  S  S  G  R  Q  L  C  S  V  L  F  F  Y  Q  N  I  S  I  S  T  S  N  T  S  Y  G  H  N  F  S  F  K  K  E  F  F  *  S  S  H  V  F  K  V  R  R  N  L  H  Q  C  C  K  M  S  T  H  S  N  *  S  L  T  A  L  R  P  T  *  L  S  P  L  H  T  *  A  I  H  P  P  F  L  A  L  N  L  S  L  E  K  H  T  A  S  C  *  *  E  K  K  R  A  S  *  I  L  L  Q  R  D  E  M  P  T  G  P  Q  R  D  Y  G  *  C  C  W  S  C  C  W  S  D  G  D  L  Q  A  D  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0226F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="62701" PGL_stop="63818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62701" e_stop="62923"/>
            <exon e_start="63118" e_stop="63296"/>
            <exon e_start="63490" e_stop="63712"/>
            <exon e_start="63793" e_stop="63818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.866" acc_prob="0.989" e_score="0.996"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.873" acc_prob="0.887" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="62701" e_stop="62923" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.866" acc_prob="0.989">
            <gDNA_intron_boundary i_start="62924" i_stop="63117" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="63118" e_stop="63296" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63297" i_stop="63489" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="63490" e_stop="63712" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.873" acc_prob="0.887">
            <gDNA_intron_boundary i_start="63713" i_stop="63792" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63793" e_stop="63818" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62701" stop="62923"/>
              <exon start="63118" stop="63296"/>
              <exon start="63490" stop="63712"/>
              <exon start="63793" stop="63818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62701" stop="62923"/>
              <exon start="63118" stop="63296"/>
              <exon start="63490" stop="63511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCACCCATCACGGCGAGTCATGGGAGGACCCTTACAGCTGGATGTCACAGCTCAATGACAAAGTAGCCATGCGCCATATGGATGTGTACATGGAACAGGAGGAGAAATACATTGAAGCCGTTATGTCCGATACCGAACGCCTCCAGTCCAAACTTCAGTCGGAAATGGGCTCTCGCTTGTCAAATGAACTCTCCACACCTCCCCTTCGTTGGGGTCCTTG : GTTGTACTATAGGCGAGTGGAAGAAGGGAAGCAGTATCCAGTGCTGTGTAGAAGGTTAGCACGGGCAAATGAAGATTTCATTTCCAATAGATCTCCTTCAGCAGGTTTTGATTTTACTTCGGGGAAGAGAATTGAGCAGAAGCTTCTTGACTACAATGAAGAAGCTGAAAGATTTGGAG : GTTATGCATATGAAGAATTATCAGAAGTGTCCCCTGATCACCGATATCTAGCTTACACAATGTATGATAAGGATAACGATTGCTTTAAATTGTCTGTGCGAGACTTAAATTTCGGTTCACTATGTAGTAAGCCCCAAGCAGATCGGGTTTCAAACATAGCTTGGGGGAAAGATGGACAAGCATTACTCTATGTTGTCACTGATCACTGTAAGAGGCCTTATAG : AATCTACTGTAGTATGATTGGGTCTG</gDNA_template>
            <first_frame> L  S  P  I  T  A  S  H  G  R  T  L  T  A  G  C  H  S  S  M  T  K  *  P  C  A  I  W  M  C  T  W  N  R  R  R  N  T  L  K  P  L  C  P  I  P  N  A  S  S  P  N  F  S  R  K  W  A  L  A  C  Q  M  N  S  P  H  L  P  F  V  G  V  L   : G  C  T  I  G  E  W  K  K  G  S  S  I  Q  C  C  V  E  G  *  H  G  Q  M  K  I  S  F  P  I  D  L  L  Q  Q  V  L  I  L  L  R  G  R  E  L  S  R  S  F  L  T  T  M  K  K  L  K  D  L  E  :  V  M  H  M  K  N  Y  Q  K  C  P  L  I  T  D  I  *  L  T  Q  C  M  I  R  I  T  I  A  L  N  C  L  C  E  T  *  I  S  V  H  Y  V  V  S  P  K  Q  I  G  F  Q  T  *  L  G  G  K  M  D  K  H  Y  S  M  L  S  L  I  T  V  R  G  L  I   : E  S  T  V  V  *  L  G  L </first_frame>
            <second_frame>  F  H  P  S  R  R  V  M  G  G  P  L  Q  L  D  V  T  A  Q  *  Q  S  S  H  A  P  Y  G  C  V  H  G  T  G  G  E  I  H  *  S  R  Y  V  R  Y  R  T  P  P  V  Q  T  S  V  G  N  G  L  S  L  V  K  *  T  L  H  T  S  P  S  L  G  S  L  :  V  V  L  *  A  S  G  R  R  E  A  V  S  S  A  V  *  K  V  S  T  G  K  *  R  F  H  F  Q  *  I  S  F  S  R  F  *  F  Y  F  G  E  E  N  *  A  E  A  S  *  L  Q  *  R  S  *  K  I  W  R :   L  C  I  *  R  I  I  R  S  V  P  *  S  P  I  S  S  L  H  N  V  *  *  G  *  R  L  L  *  I  V  C  A  R  L  K  F  R  F  T  M  *  *  A  P  S  R  S  G  F  K  H  S  L  G  E  R  W  T  S  I  T  L  C  C  H  *  S  L  *  E  A  L  *  :  N  L  L  *  Y  D  W  V   </second_frame>
            <third_frame>   F  T  H  H  G  E  S  W  E  D  P  Y  S  W  M  S  Q  L  N  D  K  V  A  M  R  H  M  D  V  Y  M  E  Q  E  E  K  Y  I  E  A  V  M  S  D  T  E  R  L  Q  S  K  L  Q  S  E  M  G  S  R  L  S  N  E  L  S  T  P  P  L  R  W  G  P  W :   L  Y  Y  R  R  V  E  E  G  K  Q  Y  P  V  L  C  R  R  L  A  R  A  N  E  D  F  I  S  N  R  S  P  S  A  G  F  D  F  T  S  G  K  R  I  E  Q  K  L  L  D  Y  N  E  E  A  E  R  F  G   : G  Y  A  Y  E  E  L  S  E  V  S  P  D  H  R  Y  L  A  Y  T  M  Y  D  K  D  N  D  C  F  K  L  S  V  R  D  L  N  F  G  S  L  C  S  K  P  Q  A  D  R  V  S  N  I  A  W  G  K  D  G  Q  A  L  L  Y  V  V  T  D  H  C  K  R  P  Y  R :   I  Y  C  S  M  I  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62703" stop="62923"/>
                    <exon start="63118" stop="63296"/>
                    <exon start="63490" stop="63712"/>
                    <exon start="63793" stop="63817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTHHGESWEDPYSWMSQLNDKVAMRHMDVYMEQEEKYIEAVMSDTERLQSKLQSEMGSRLSNELSTPPLRWGPWLYYRRVEEGKQYPVLCRRLARANEDFISNRSPSAGFDFTSGKRIEQKLLDYNEEAERFGGYAYEELSEVSPDHRYLAYTMYDKDNDCFKLSVRDLNFGSLCSKPQADRVSNIAWGKDGQALLYVVTDHCKRPYRIYCSMIGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="66547" PGL_stop="67615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66547" e_stop="66656"/>
            <exon e_start="67255" e_stop="67615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="0.964"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="66547" e_stop="66656" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="66657" i_stop="67254" i_length="598"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="67255" e_stop="67615" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66547" stop="66656"/>
              <exon start="67255" stop="67615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419884" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCGGGGACATTACTGACTTCCAGGCAATCCGCAAATATTCACCTTACGATAACATTCAAAAAGATCTTGTATATCCAGCTATTCTGGTGACATCTTCATTCAACACAAG : GTTTGGAGTGTGGGAAGCTGCAAAATATGTTGCTCGGGTGCGTGAATGTTCCATTTATGATCCTAAACACCCAGTATTACTTAATTTGACAGCTGATATAGTTGAAGAAAATCGATACCTGCACTGCAAGGAGTCAGCGCTGGAGACAGCTTTCCTTATCAAGATGATGGAATCATAGCCATTTTCGCTTTGTTTATTAATTTCATGTATTTTGTAGAAAAGCTTATGTACCATATGATCTCAACTTATTTTTTCACCTTCCATATGAAGCCAGATTGTAGTAACACACTTTTAAGCAGTTAACAAATATTCTACTGATCTTGCCCTTTACAGCAAAGGTGTTCTCCATGAGGAGAAATTC</gDNA_template>
            <first_frame> P  G  D  I  T  D  F  Q  A  I  R  K  Y  S  P  Y  D  N  I  Q  K  D  L  V  Y  P  A  I  L  V  T  S  S  F  N  T  R :   F  G  V  W  E  A  A  K  Y  V  A  R  V  R  E  C  S  I  Y  D  P  K  H  P  V  L  L  N  L  T  A  D  I  V  E  E  N  R  Y  L  H  C  K  E  S  A  L  E  T  A  F  L  I  K  M  M  E  S  *  P  F  S  L  C  L  L  I  S  C  I  L  *  K  S  L  C  T  I  *  S  Q  L  I  F  S  P  S  I  *  S  Q  I  V  V  T  H  F  *  A  V  N  K  Y  S  T  D  L  A  L  Y  S  K  G  V  L  H  E  E  K  F </first_frame>
            <second_frame>  P  G  T  L  L  T  S  R  Q  S  A  N  I  H  L  T  I  T  F  K  K  I  L  Y  I  Q  L  F  W  *  H  L  H  S  T  Q   : G  L  E  C  G  K  L  Q  N  M  L  L  G  C  V  N  V  P  F  M  I  L  N  T  Q  Y  Y  L  I  *  Q  L  I  *  L  K  K  I  D  T  C  T  A  R  S  Q  R  W  R  Q  L  S  L  S  R  *  W  N  H  S  H  F  R  F  V  Y  *  F  H  V  F  C  R  K  A  Y  V  P  Y  D  L  N  L  F  F  H  L  P  Y  E  A  R  L  *  *  H  T  F  K  Q  L  T  N  I  L  L  I  L  P  F  T  A  K  V  F  S  M  R  R  N   </second_frame>
            <third_frame>   R  G  H  Y  *  L  P  G  N  P  Q  I  F  T  L  R  *  H  S  K  R  S  C  I  S  S  Y  S  G  D  I  F  I  Q  H  K  :  V  W  S  V  G  S  C  K  I  C  C  S  G  A  *  M  F  H  L  *  S  *  T  P  S  I  T  *  F  D  S  *  Y  S  *  R  K  S  I  P  A  L  Q  G  V  S  A  G  D  S  F  P  Y  Q  D  D  G  I  I  A  I  F  A  L  F  I  N  F  M  Y  F  V  E  K  L  M  Y  H  M  I  S  T  Y  F  F  T  F  H  M  K  P  D  C  S  N  T  L  L  S  S  *  Q  I  F  Y  *  S  C  P  L  Q  Q  R  C  S  P  *  G  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66547" stop="66656"/>
                    <exon start="67255" stop="67432"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGDITDFQAIRKYSPYDNIQKDLVYPAILVTSSFNTRFGVWEAAKYVARVRECSIYDPKHPVLLNLTADIVEENRYLHCKESALETAFLIKMMES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67360" stop="67557"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKSIPALQGVSAGDSFPYQDDGIIAIFALFINFMYFVEKLMYHMISTYFFTFHMKPDCSNTLLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="72384" PGL_stop="70090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72384" e_stop="70090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="72384" e_stop="70090" e_length="2295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="71541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72062" stop="71258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71572" stop="71055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71177" stop="70314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71043" stop="70391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70683" stop="70090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70683" stop="70091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAACAAAAAGAGGAGAAAGAAGGATGCAGCTACTGGTCTCTTTGTTTTTCCAGTCCAATCTAGGGTTACTGGTGCAAAGTACTCCTACCAGTGGATGGCACTGGCACAGCAGAATAATTGGCATGTGTTGCTTGATGCCGGTGCTCTGGGTCCAAAAGATATGGATTCCCTTGGATTGTCTTTATTTCGTCCGGACTTTATAATTACTTCATTCTACAGGGTGTTCGGTTATGACCCAACTGGATTTGGATGTCTTCTTATCAAGAAATCTGTGATGGCAAGCCTTCAAAATCAGTCTGGGCATGCTGGGTCTGGTATAGTGAAAATTACTCCTGTTTTCCCCTTGTATTTGAGTGATTCAATTGATGGTTTCCCCGGTTTGACCGAGGACGATGAAGCCGGAGAGAACAGTGAAGTTAATGCTGAAACTCGGCCAGGGTCTCAGTTGCCAGCCTTTTCTGGTGCATTCACTTCTGCTCAGGTAAGGGATGTATTTGAGACAGAAATGGAGCATGACAATAGCTCTGATAGGGATGGAGCTAGCACAATATTTGAAGAGACTGAAAGCATTTCTATTGGAGAGGTCATGAGAAGTCCAGTCTTTAGCGAAGATGAATCATCTGATAACTCCCTCTGGATTGACTTGGGTCAGAGTCCTTTGGGTTCTGATGGTGCTGGGCAGTCTAACAAACAAAAGATTGCCTCTCCAGCACCCCCATTTTGGTTTGCTGGCAGGAAGAACAATAAAAGGCTCTCTCCCAAGCCTTCAAAGATGTCAAGCAGCCCATTGTATGACAGAGAGTTGAATCCAGGGCGCCATGAAGACAACCATGTGCTCTCATTCGATGCAGCTGTTCGGTCGGTGTCTCAAGAATTCGATCACTTCAAGGAGATTCCTGAAGAAGACCAGTTTGATAAGAGAAGCCCTGCTTCAAGAGAATTCAGAGAGATCGAGGAAGAACCAGAAACCAGCAAACCTGCTCACACATTTGATTCTGGTCTTGGCAACTCAATTTCAATTTCTCAGCATCAAACCCTTGATAATGGATCAGCCTCTGAGATATGTCCGGAGATTAAAGAGAGTGCTATAAGAAGAGAAACTGAAGGTGAGTTCAGGTTATTGGAAAGGAGAGAAGGAAACAGATATGCAGGTGGTAGATTTTTTGGTATAGAAGATGCTGATCACGGAAGCAGGGGAAGACGTGTATCCTTCAGCATGGAAGACAACCGCAAAGCCCGTATGAGTCATACACTTGAGCCTGGGGAAATGTTAGCAACAAGTTTGGATGATGAAGAGTTCATTAGCGATGGCGATTATGATGATGGACAAGATTCAGACAGGAGAGAGCCCGAGATAGCATGCAGGCATCTTGATCACATTAACATGTTGGGTCTCAATAAAACTACTCTACGGCTAAGATATCTCGTCAATTGGCTAGTTACCTCATTGCTTCAGATAAGATTTCCTGGTTCAAATGGAGAAGACAGTTCACGACTTGTTCGCATCTATGGTCCGAAAATCAAATATGAGAGGGGCGCAGCTGTTGCATTCAACGTGCGAGACAGAAACAGGGGTCTTGTTAGTCCTGAAATAGTTCAGAGACTGGCTGAGTCACATGGTATCTCTCTTGGCATTGGTATTCTAAGTCACATACGAATCTTAGATAACCCAAAACAGCAGCAACGGTCTCTGAGTCTTGATGACACTACCCTTTGCAAACCCATGGAGAATGGCAAGTATGATGGTAGAAGTGGGTTTGTGAGAGTCGAAGTTGTTACTGCTTCACTTGGCTTCCTCTCTAATTTTGATGATGTCTATAAGTTGTGGGCTTTTGTGGCTAAATTTCTTGACCCTGGTTTTATTAAAGAAGCTGGACTCCCACCTGTTGCAGAAGACGTCGAGTCATGAAGCTACTAAATGAAGGCTGAATTGGTAGCTGTTTGCTCCTAATATAAGATGCAGGAATCTATCACCAATAGTGGGGTGAAAATCTGATGAAAGTTGCAAGAGAAACAATGAAAAGGTCTGAGTTGTATTCTTTTGGCCCCTCTGTTTCTTCGATGCATGCGGGAGAAATTTTTTTATTCTTGTCTTTAATTGCTTGAATGTTTCTTTACCATTTTGGAGTTTCCTGTAGAGTTGGGAGTTAGAAATTTGTATTTTCTCAGGTAGTCATGAATCATGAAGAACCAAAGCAGTTATAAGCCAGGGGTTTTATGATCCCTTTCCGCCATTTGCCCCTCTTGCTTCTCAGCTGTGTATAATGATCATTCATGCTTTTGCTCAGGCTA</gDNA_template>
            <first_frame> F  *  Q  K  E  E  K  E  G  C  S  Y  W  S  L  C  F  S  S  P  I  *  G  Y  W  C  K  V  L  L  P  V  D  G  T  G  T  A  E  *  L  A  C  V  A  *  C  R  C  S  G  S  K  R  Y  G  F  P  W  I  V  F  I  S  S  G  L  Y  N  Y  F  I  L  Q  G  V  R  L  *  P  N  W  I  W  M  S  S  Y  Q  E  I  C  D  G  K  P  S  K  S  V  W  A  C  W  V  W  Y  S  E  N  Y  S  C  F  P  L  V  F  E  *  F  N  *  W  F  P  R  F  D  R  G  R  *  S  R  R  E  Q  *  S  *  C  *  N  S  A  R  V  S  V  A  S  L  F  W  C  I  H  F  C  S  G  K  G  C  I  *  D  R  N  G  A  *  Q  *  L  *  *  G  W  S  *  H  N  I  *  R  D  *  K  H  F  Y  W  R  G  H  E  K  S  S  L  *  R  R  *  I  I  *  *  L  P  L  D  *  L  G  S  E  S  F  G  F  *  W  C  W  A  V  *  Q  T  K  D  C  L  S  S  T  P  I  L  V  C  W  Q  E  E  Q  *  K  A  L  S  Q  A  F  K  D  V  K  Q  P  I  V  *  Q  R  V  E  S  R  A  P  *  R  Q  P  C  A  L  I  R  C  S  C  S  V  G  V  S  R  I  R  S  L  Q  G  D  S  *  R  R  P  V  *  *  E  K  P  C  F  K  R  I  Q  R  D  R  G  R  T  R  N  Q  Q  T  C  S  H  I  *  F  W  S  W  Q  L  N  F  N  F  S  A  S  N  P  *  *  W  I  S  L  *  D  M  S  G  D  *  R  E  C  Y  K  K  R  N  *  R  *  V  Q  V  I  G  K  E  R  R  K  Q  I  C  R  W  *  I  F  W  Y  R  R  C  *  S  R  K  Q  G  K  T  C  I  L  Q  H  G  R  Q  P  Q  S  P  Y  E  S  Y  T  *  A  W  G  N  V  S  N  K  F  G  *  *  R  V  H  *  R  W  R  L  *  *  W  T  R  F  R  Q  E  R  A  R  D  S  M  Q  A  S  *  S  H  *  H  V  G  S  Q  *  N  Y  S  T  A  K  I  S  R  Q  L  A  S  Y  L  I  A  S  D  K  I  S  W  F  K  W  R  R  Q  F  T  T  C  S  H  L  W  S  E  N  Q  I  *  E  G  R  S  C  C  I  Q  R  A  R  Q  K  Q  G  S  C  *  S  *  N  S  S  E  T  G  *  V  T  W  Y  L  S  W  H  W  Y  S  K  S  H  T  N  L  R  *  P  K  T  A  A  T  V  S  E  S  *  *  H  Y  P  L  Q  T  H  G  E  W  Q  V  *  W  *  K  W  V  C  E  S  R  S  C  Y  C  F  T  W  L  P  L  *  F  *  *  C  L  *  V  V  G  F  C  G  *  I  S  *  P  W  F  Y  *  R  S  W  T  P  T  C  C  R  R  R  R  V  M  K  L  L  N  E  G  *  I  G  S  C  L  L  L  I  *  D  A  G  I  Y  H  Q  *  W  G  E  N  L  M  K  V  A  R  E  T  M  K  R  S  E  L  Y  S  F  G  P  S  V  S  S  M  H  A  G  E  I  F  L  F  L  S  L  I  A  *  M  F  L  Y  H  F  G  V  S  C  R  V  G  S  *  K  F  V  F  S  Q  V  V  M  N  H  E  E  P  K  Q  L  *  A  R  G  F  M  I  P  F  R  H  L  P  L  L  L  L  S  C  V  *  *  S  F  M  L  L  L  R  L </first_frame>
            <second_frame>  S  N  K  K  R  R  K  K  D  A  A  T  G  L  F  V  F  P  V  Q  S  R  V  T  G  A  K  Y  S  Y  Q  W  M  A  L  A  Q  Q  N  N  W  H  V  L  L  D  A  G  A  L  G  P  K  D  M  D  S  L  G  L  S  L  F  R  P  D  F  I  I  T  S  F  Y  R  V  F  G  Y  D  P  T  G  F  G  C  L  L  I  K  K  S  V  M  A  S  L  Q  N  Q  S  G  H  A  G  S  G  I  V  K  I  T  P  V  F  P  L  Y  L  S  D  S  I  D  G  F  P  G  L  T  E  D  D  E  A  G  E  N  S  E  V  N  A  E  T  R  P  G  S  Q  L  P  A  F  S  G  A  F  T  S  A  Q  V  R  D  V  F  E  T  E  M  E  H  D  N  S  S  D  R  D  G  A  S  T  I  F  E  E  T  E  S  I  S  I  G  E  V  M  R  S  P  V  F  S  E  D  E  S  S  D  N  S  L  W  I  D  L  G  Q  S  P  L  G  S  D  G  A  G  Q  S  N  K  Q  K  I  A  S  P  A  P  P  F  W  F  A  G  R  K  N  N  K  R  L  S  P  K  P  S  K  M  S  S  S  P  L  Y  D  R  E  L  N  P  G  R  H  E  D  N  H  V  L  S  F  D  A  A  V  R  S  V  S  Q  E  F  D  H  F  K  E  I  P  E  E  D  Q  F  D  K  R  S  P  A  S  R  E  F  R  E  I  E  E  E  P  E  T  S  K  P  A  H  T  F  D  S  G  L  G  N  S  I  S  I  S  Q  H  Q  T  L  D  N  G  S  A  S  E  I  C  P  E  I  K  E  S  A  I  R  R  E  T  E  G  E  F  R  L  L  E  R  R  E  G  N  R  Y  A  G  G  R  F  F  G  I  E  D  A  D  H  G  S  R  G  R  R  V  S  F  S  M  E  D  N  R  K  A  R  M  S  H  T  L  E  P  G  E  M  L  A  T  S  L  D  D  E  E  F  I  S  D  G  D  Y  D  D  G  Q  D  S  D  R  R  E  P  E  I  A  C  R  H  L  D  H  I  N  M  L  G  L  N  K  T  T  L  R  L  R  Y  L  V  N  W  L  V  T  S  L  L  Q  I  R  F  P  G  S  N  G  E  D  S  S  R  L  V  R  I  Y  G  P  K  I  K  Y  E  R  G  A  A  V  A  F  N  V  R  D  R  N  R  G  L  V  S  P  E  I  V  Q  R  L  A  E  S  H  G  I  S  L  G  I  G  I  L  S  H  I  R  I  L  D  N  P  K  Q  Q  Q  R  S  L  S  L  D  D  T  T  L  C  K  P  M  E  N  G  K  Y  D  G  R  S  G  F  V  R  V  E  V  V  T  A  S  L  G  F  L  S  N  F  D  D  V  Y  K  L  W  A  F  V  A  K  F  L  D  P  G  F  I  K  E  A  G  L  P  P  V  A  E  D  V  E  S  *  S  Y  *  M  K  A  E  L  V  A  V  C  S  *  Y  K  M  Q  E  S  I  T  N  S  G  V  K  I  *  *  K  L  Q  E  K  Q  *  K  G  L  S  C  I  L  L  A  P  L  F  L  R  C  M  R  E  K  F  F  Y  S  C  L  *  L  L  E  C  F  F  T  I  L  E  F  P  V  E  L  G  V  R  N  L  Y  F  L  R  *  S  *  I  M  K  N  Q  S  S  Y  K  P  G  V  L  *  S  L  S  A  I  C  P  S  C  F  S  A  V  Y  N  D  H  S  C  F  C  S  G   </second_frame>
            <third_frame>   L  T  K  R  G  E  R  R  M  Q  L  L  V  S  L  F  F  Q  S  N  L  G  L  L  V  Q  S  T  P  T  S  G  W  H  W  H  S  R  I  I  G  M  C  C  L  M  P  V  L  W  V  Q  K  I  W  I  P  L  D  C  L  Y  F  V  R  T  L  *  L  L  H  S  T  G  C  S  V  M  T  Q  L  D  L  D  V  F  L  S  R  N  L  *  W  Q  A  F  K  I  S  L  G  M  L  G  L  V  *  *  K  L  L  L  F  S  P  C  I  *  V  I  Q  L  M  V  S  P  V  *  P  R  T  M  K  P  E  R  T  V  K  L  M  L  K  L  G  Q  G  L  S  C  Q  P  F  L  V  H  S  L  L  L  R  *  G  M  Y  L  R  Q  K  W  S  M  T  I  A  L  I  G  M  E  L  A  Q  Y  L  K  R  L  K  A  F  L  L  E  R  S  *  E  V  Q  S  L  A  K  M  N  H  L  I  T  P  S  G  L  T  W  V  R  V  L  W  V  L  M  V  L  G  S  L  T  N  K  R  L  P  L  Q  H  P  H  F  G  L  L  A  G  R  T  I  K  G  S  L  P  S  L  Q  R  C  Q  A  A  H  C  M  T  E  S  *  I  Q  G  A  M  K  T  T  M  C  S  H  S  M  Q  L  F  G  R  C  L  K  N  S  I  T  S  R  R  F  L  K  K  T  S  L  I  R  E  A  L  L  Q  E  N  S  E  R  S  R  K  N  Q  K  P  A  N  L  L  T  H  L  I  L  V  L  A  T  Q  F  Q  F  L  S  I  K  P  L  I  M  D  Q  P  L  R  Y  V  R  R  L  K  R  V  L  *  E  E  K  L  K  V  S  S  G  Y  W  K  G  E  K  E  T  D  M  Q  V  V  D  F  L  V  *  K  M  L  I  T  E  A  G  E  D  V  Y  P  S  A  W  K  T  T  A  K  P  V  *  V  I  H  L  S  L  G  K  C  *  Q  Q  V  W  M  M  K  S  S  L  A  M  A  I  M  M  M  D  K  I  Q  T  G  E  S  P  R  *  H  A  G  I  L  I  T  L  T  C  W  V  S  I  K  L  L  Y  G  *  D  I  S  S  I  G  *  L  P  H  C  F  R  *  D  F  L  V  Q  M  E  K  T  V  H  D  L  F  A  S  M  V  R  K  S  N  M  R  G  A  Q  L  L  H  S  T  C  E  T  E  T  G  V  L  L  V  L  K  *  F  R  D  W  L  S  H  M  V  S  L  L  A  L  V  F  *  V  T  Y  E  S  *  I  T  Q  N  S  S  N  G  L  *  V  L  M  T  L  P  F  A  N  P  W  R  M  A  S  M  M  V  E  V  G  L  *  E  S  K  L  L  L  L  H  L  A  S  S  L  I  L  M  M  S  I  S  C  G  L  L  W  L  N  F  L  T  L  V  L  L  K  K  L  D  S  H  L  L  Q  K  T  S  S  H  E  A  T  K  *  R  L  N  W  *  L  F  A  P  N  I  R  C  R  N  L  S  P  I  V  G  *  K  S  D  E  S  C  K  R  N  N  E  K  V  *  V  V  F  F  W  P  L  C  F  F  D  A  C  G  R  N  F  F  I  L  V  F  N  C  L  N  V  S  L  P  F  W  S  F  L  *  S  W  E  L  E  I  C  I  F  S  G  S  H  E  S  *  R  T  K  A  V  I  S  Q  G  F  Y  D  P  F  P  P  F  A  P  L  A  S  Q  L  C  I  M  I  I  H  A  F  A  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72383" stop="70473"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1908</number_coding_nucleotides>
                  <number_encoded_amino_acids>636</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKKRRKKDAATGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFIITSFYRVFGYDPTGFGCLLIKKSVMASLQNQSGHAGSGIVKITPVFPLYLSDSIDGFPGLTEDDEAGENSEVNAETRPGSQLPAFSGAFTSAQVRDVFETEMEHDNSSDRDGASTIFEETESISIGEVMRSPVFSEDESSDNSLWIDLGQSPLGSDGAGQSNKQKIASPAPPFWFAGRKNNKRLSPKPSKMSSSPLYDRELNPGRHEDNHVLSFDAAVRSVSQEFDHFKEIPEEDQFDKRSPASREFREIEEEPETSKPAHTFDSGLGNSISISQHQTLDNGSASEICPEIKESAIRRETEGEFRLLERREGNRYAGGRFFGIEDADHGSRGRRVSFSMEDNRKARMSHTLEPGEMLATSLDDEEFISDGDYDDGQDSDRREPEIACRHLDHINMLGLNKTTLRLRYLVNWLVTSLLQIRFPGSNGEDSSRLVRIYGPKIKYERGAAVAFNVRDRNRGLVSPEIVQRLAESHGISLGIGILSHIRILDNPKQQQRSLSLDDTTLCKPMENGKYDGRSGFVRVEVVTASLGFLSNFDDVYKLWAFVAKFLDPGFIKEAGLPPVAEDVES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="81073" PGL_stop="81311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81073" e_stop="81311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81073" e_stop="81311" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81073" stop="81311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATGTATCATTGTCTCTTCACGATGCACTCCCTTTCTGTATTACTAAATTAATTACAAGTTTTGATACTGAAGGGCAAACAAAAAAAGGTCACTAATTAATATCTAATAAATTAATTAAATTCCATAATGAATTGGATTTTTTTCATTTTGTCAGGTCATGGTAGCTTCGAATCAAAGTATTTATATATTTAAATATCTATAAATAAATCATCTTTTACAAACCCACAAAAAAAATA</gDNA_template>
            <first_frame> I  M  Y  H  C  L  F  T  M  H  S  L  S  V  L  L  N  *  L  Q  V  L  I  L  K  G  K  Q  K  K  V  T  N  *  Y  L  I  N  *  L  N  S  I  M  N  W  I  F  F  I  L  S  G  H  G  S  F  E  S  K  Y  L  Y  I  *  I  S  I  N  K  S  S  F  T  N  P  Q  K  K   </first_frame>
            <second_frame>  *  C  I  I  V  S  S  R  C  T  P  F  L  Y  Y  *  I  N  Y  K  F  *  Y  *  R  A  N  K  K  R  S  L  I  N  I  *  *  I  N  *  I  P  *  *  I  G  F  F  S  F  C  Q  V  M  V  A  S  N  Q  S  I  Y  I  F  K  Y  L  *  I  N  H  L  L  Q  T  H  K  K  N  </second_frame>
            <third_frame>   N  V  S  L  S  L  H  D  A  L  P  F  C  I  T  K  L  I  T  S  F  D  T  E  G  Q  T  K  K  G  H  *  L  I  S  N  K  L  I  K  F  H  N  E  L  D  F  F  H  F  V  R  S  W  *  L  R  I  K  V  F  I  Y  L  N  I  Y  K  *  I  I  F  Y  K  P  T  K  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0226F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="83147" PGL_stop="82621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83147" e_stop="82688"/>
            <exon e_start="82633" e_stop="82621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="0.978"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="83147" e_stop="82688" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="82687" i_stop="82634" i_length="54"/>
          </intron>
          <exon e_serial="2" e_score="0.538">
            <gDNA_exon_boundary e_start="82633" e_stop="82621" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83147" stop="82688"/>
              <exon start="82633" stop="82621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83006" stop="82689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82853" stop="82689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACACCCGTGCTTACTGAATTGAATGATGTCTTCAAAGGCGAGTCACAGCTTAGTGATGAATTTGACATTGGAAAAACGCAATCAAAAGAAGAAAAAGAGGACAGCATTTGTGTCTTGGATGACAAAAACTGTGATGAGGTTGCACCAGAAGTAAGTTCAAAGTCGAAGAAGAAGCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGAGACGTGGAAGAAGCAATCTGGAAGCATAACATCTCGAGTAACAAAATAGCGGGATGGTCTTTTGCACCCGAAACAGGTTACGACGTTTAATGGTTAAGCTTATTTGCTGTGAACAAAGGTCTAGGTGACTGGTGGTTTTTGCTAAATGTAATATATATAACCTGTTTAAGGGTGTCTTTTTGCAAAACTTTTTAACTAAAGTTAACTGAAGTGATCCAATATGAAA : TTGATAGAAAACT</gDNA_template>
            <first_frame> V  H  P  C  L  L  N  *  M  M  S  S  K  A  S  H  S  L  V  M  N  L  T  L  E  K  R  N  Q  K  K  K  K  R  T  A  F  V  S  W  M  T  K  T  V  M  R  L  H  Q  K  *  V  Q  S  R  R  R  S  L  V  E  L  L  P  H  M  S  L  I  L  L  L  E  D  *  G  R  D  V  E  E  A  I  W  K  H  N  I  S  S  N  K  I  A  G  W  S  F  A  P  E  T  G  Y  D  V  *  W  L  S  L  F  A  V  N  K  G  L  G  D  W  W  F  L  L  N  V  I  Y  I  T  C  L  R  V  S  F  C  K  T  F  *  L  K  L  T  E  V  I  Q  Y  E   : I  D  R  K   </first_frame>
            <second_frame>  Y  T  R  A  Y  *  I  E  *  C  L  Q  R  R  V  T  A  *  *  *  I  *  H  W  K  N  A  I  K  R  R  K  R  G  Q  H  L  C  L  G  *  Q  K  L  *  *  G  C  T  R  S  K  F  K  V  E  E  E  A  L  S  S  C  C  H  T  C  L  *  Y  Y  C  W  K  T  K  A  E  T  W  K  K  Q  S  G  S  I  T  S  R  V  T  K  *  R  D  G  L  L  H  P  K  Q  V  T  T  F  N  G  *  A  Y  L  L  *  T  K  V  *  V  T  G  G  F  C  *  M  *  Y  I  *  P  V  *  G  C  L  F  A  K  L  F  N  *  S  *  L  K  *  S  N  M  K  :  L  I  E  N  </second_frame>
            <third_frame>   T  P  V  L  T  E  L  N  D  V  F  K  G  E  S  Q  L  S  D  E  F  D  I  G  K  T  Q  S  K  E  E  K  E  D  S  I  C  V  L  D  D  K  N  C  D  E  V  A  P  E  V  S  S  K  S  K  K  K  P  C  R  A  A  A  T  H  V  F  D  T  I  A  G  R  L  R  Q  R  R  G  R  S  N  L  E  A  *  H  L  E  *  Q  N  S  G  M  V  F  C  T  R  N  R  L  R  R  L  M  V  K  L  I  C  C  E  Q  R  S  R  *  L  V  V  F  A  K  C  N  I  Y  N  L  F  K  G  V  F  L  Q  N  F  L  T  K  V  N  *  S  D  P  I  *  N :   *  *  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83145" stop="82885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPVLTELNDVFKGESQLSDEFDIGKTQSKEEKEDSICVLDDKNCDEVAPEVSSKSKKKPCRAAATHVFDTIAGRLRQRRGRSNLEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="83920" PGL_stop="83193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83920" e_stop="83193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83920" e_stop="83193" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83920" stop="83193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83920" stop="83260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGCTAGACTGGGTTATAAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAACTTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAAGATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCCAATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAACCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCTACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTACTACTGAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAATGCAGGAAACTTCTCAGCAGACAACAAAT</gDNA_template>
            <first_frame> D  C  *  T  G  L  *  V  S  R  T  L  S  N  S  N  P  S  S  Y  C  Q  Y  R  E  *  L  D  T  I  L  C  K  K  I  T  T  F  L  R  Y  G  R  Y  K  K  R  *  G  T  L  *  G  E  T  S  G  V  C  G  V  *  C  *  *  T  Q  F  S  S  R  K  *  Y  R  A  F  A  A  E  T  L  S  *  K  Q  W  Y  R  S  C  S  L  R  R  Q  C  G  K  L  L  N  R  Q  Q  I  R  K  C  K  C  C  A  G  G  R  *  L  I  D  F  S  N  R  D  E  T  S  G  L  *  W  P  *  A  Q  L  S  T  G  K  *  H  S  A  L  A  E  V  H  R  *  T  L  V  A  T  E  T  *  L  R  K  Q  C  R  K  Y  L  S  S  Q  Q  I  R  K  *  K  C  R  A  G  G  Q  L  T  D  F  S  N  R  G  E  T  N  L  I  T  R  K  *  H  R  A  L  A  E  V  H  C  *  T  L  V  T  T  E  T  *  L  *  K  Q  W  *  K  S  C  A  L  M  *  *  C  R  K  L  L  S  R  Q  Q   </first_frame>
            <second_frame>  I  A  R  L  G  Y  K  S  V  A  H  Y  L  I  Q  T  H  R  A  T  V  S  T  E  N  N  L  T  P  F  S  A  K  R  S  L  P  F  S  D  M  E  G  T  R  K  D  E  G  L  C  E  V  K  P  V  A  Y  V  A  Y  D  A  N  E  P  N  L  A  P  E  S  S  T  E  P  L  L  L  K  P  Y  P  E  N  S  G  T  D  L  V  L  S  G  D  N  V  G  N  F  S  T  D  N  K  S  G  N  A  N  A  V  L  V  V  G  S  S  L  T  S  Q  T  E  M  K  P  V  D  Y  D  G  H  E  P  N  L  A  P  E  S  S  T  V  P  L  L  K  S  I  V  E  P  L  L  L  L  K  H  D  S  E  N  S  A  G  N  I  S  V  A  N  K  S  G  N  E  N  V  V  L  V  G  N  S  L  T  S  Q  T  E  V  K  P  T  L  L  P  E  S  S  T  E  P  L  L  K  S  I  A  E  P  L  L  L  L  K  H  D  S  E  N  S  G  K  N  L  V  L  S  C  D  N  A  G  N  F  S  A  D  N  K  </second_frame>
            <third_frame>   L  L  D  W  V  I  S  Q  S  H  I  I  *  F  K  P  I  E  L  L  S  V  P  R  I  T  *  H  H  S  L  Q  K  D  H  Y  L  S  Q  I  W  K  V  Q  E  K  M  R  D  S  V  R  *  N  Q  W  R  M  W  R  M  M  L  M  N  P  I  *  L  Q  K  V  V  Q  S  L  C  C  *  N  L  I  L  K  T  V  V  Q  I  L  F  S  Q  A  T  M  W  E  T  S  Q  Q  T  T  N  Q  E  M  Q  M  L  C  W  W  *  V  A  H  *  L  L  K  Q  R  *  N  Q  W  T  M  M  A  M  S  P  T  *  H  R  K  V  A  Q  C  P  C  *  S  P  S  L  N  P  C  C  Y  *  N  M  T  P  K  T  V  Q  E  I  S  Q  *  P  T  N  Q  E  M  K  M  S  C  W  W  A  T  H  *  L  L  K  Q  R  *  N  Q  P  Y  Y  Q  K  V  A  Q  S  P  C  *  S  P  L  L  N  P  C  Y  Y  *  N  M  T  L  K  T  V  V  K  I  L  C  S  H  V  I  M  Q  E  T  S  Q  Q  T  T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83919" stop="83194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IARLGYKSVAHYLIQTHRATVSTENNLTPFSAKRSLPFSDMEGTRKDEGLCEVKPVAYVAYDANEPNLAPESSTEPLLLKPYPENSGTDLVLSGDNVGNFSTDNKSGNANAVLVVGSSLTSQTEMKPVDYDGHEPNLAPESSTVPLLKSIVEPLLLLKHDSENSAGNISVANKSGNENVVLVGNSLTSQTEVKPTLLPESSTEPLLKSIAEPLLLLKHDSENSGKNLVLSCDNAGNFSADNK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87759" PGL_stop="84061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87736" e_stop="87433"/>
            <exon e_start="86699" e_stop="86460"/>
            <exon e_start="85102" e_stop="85019"/>
            <exon e_start="84177" e_stop="84061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.828" e_score="0.992"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87736" e_stop="87433" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87432" i_stop="86700" i_length="733"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="86699" e_stop="86460" e_length="240"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.828">
            <gDNA_intron_boundary i_start="86459" i_stop="85103" i_length="1357"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85102" e_stop="85019" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85018" i_stop="84178" i_length="841"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="84177" e_stop="84061" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87736" stop="87433"/>
              <exon start="86699" stop="86460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87433"/>
              <exon start="86699" stop="86460"/>
              <exon start="85102" stop="85019"/>
              <exon start="84177" stop="84061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCACAAATACATTTTTGACCGTTGGGGTTTTCACAGAGAAGAAGAAGCTGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAATACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAG : GCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATTGATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCATCAGTGCCG : ACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAATTGCCAAATTGTTCAAGGACAATTCTGTGGAGATTGCTTGTATATGAG : ATACGGAGAACATGTACTCGAAGCGAACAAGAATCCGAATTGGCTTTGCCCTGTTTGTCGAGGAATATGTAACTGCAGCTTGTGCCGGCAAGCAAAAGGTTGGGCTCCTACTGGTGC</gDNA_template>
            <first_frame> S  H  K  Y  I  F  D  R  W  G  F  H  R  E  E  E  A  G  K  W  V  L  V  G  G  K  E  L  L  R  *  T  P  T  M  S  I  A  I  P  R  K  I  Q  S  T  N  S  *  G  K  K  E  S  K  K  I  L  R  G  C  K  S  W  G  F  L  T  Y  H  S  N  S  S  L  L  G  H  P  S  F  A  K  P  L  S  V  S  L  L  C  S  V  L  D  P  R  A  G  P  P   : G  C  R  V  R  H  Q  L  A  I  Q  R  C  I  C  R  R  L  M  T  P  W  M  V  S  I  I  C  *  G  R  K  G  Q  S  Q  R  F  T  R  K  N  T  R  N  C  W  V  P  L  I  *  A  G  L  F  L  W  M  D  M  E  M  M  G  R  E  S  M  I  Q  S  K  E  K  L  V  I  S  A   : D  R  K  L  L  V  I  V  L  I  V  A  I  A  K  L  F  K  D  N  S  V  E  I  A  C  I  *   : D  T  E  N  M  Y  S  K  R  T  R  I  R  I  G  F  A  L  F  V  E  E  Y  V  T  A  A  C  A  G  K  Q  K  V  G  L  L  L  V  </first_frame>
            <second_frame>  P  T  N  T  F  L  T  V  G  V  F  T  E  K  K  K  L  E  N  G  C  S  W  E  E  K  S  C  S  G  E  H  R  Q  C  R  L  Q  Y  P  E  K  F  R  V  R  T  V  E  G  K  K  N  Q  R  K  S  *  E  D  A  K  V  G  D  F  *  H  I  T  Q  T  Q  A  C  *  D  T  H  R  S  Q  N  P  S  A  S  L  S  C  A  A  F  W  T  H  A  P  V  L  Q  :  A  A  E  C  D  T  S  *  L  F  R  G  A  S  V  E  D  *  *  L  L  G  W  *  A  S  F  V  E  G  G  R  G  K  A  R  D  L  H  G  R  T  R  E  I  V  G  F  H  *  F  E  L  D  F  F  C  G  W  I  W  K  *  W  E  E  N  L  *  S  S  Q  R  K  N  L  S  S  V  P  :  T  E  N  S  W  S  S  Y  S  L  *  Q  L  P  N  C  S  R  T  I  L  W  R  L  L  V  Y  E  :  I  R  R  T  C  T  R  S  E  Q  E  S  E  L  A  L  P  C  L  S  R  N  M  *  L  Q  L  V  P  A  S  K  R  L  G  S  Y  W  C </second_frame>
            <third_frame>   P  Q  I  H  F  *  P  L  G  F  S  Q  R  R  R  S  W  K  M  G  A  R  G  R  K  R  A  A  P  V  N  T  D  N  V  D  C  N  T  Q  K  N  S  E  Y  E  Q  L  R  E  K  R  I  K  E  N  L  E  R  M  Q  K  L  G  I  F  D  I  S  L  K  L  K  P  V  R  T  P  I  V  R  K  T  P  Q  R  L  S  P  V  Q  R  S  G  P  T  R  R  S  S  R :   L  Q  S  A  T  P  V  S  Y  S  E  V  H  L  S  K  I  D  D  S  L  D  G  K  H  H  L  L  R  E  E  G  A  K  P  E  I  Y  T  E  E  H  E  K  L  L  G  S  T  D  L  S  W  T  F  F  V  D  G  Y  G  N  D  G  K  R  I  Y  D  P  V  K  G  K  T  C  H  Q  C  R :   Q  K  T  L  G  H  R  T  H  C  S  N  C  Q  I  V  Q  G  Q  F  C  G  D  C  L  Y  M  R :   Y  G  E  H  V  L  E  A  N  K  N  P  N  W  L  C  P  V  C  R  G  I  C  N  C  S  L  C  R  Q  A  K  G  W  A  P  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87716" stop="87433"/>
                    <exon start="86699" stop="86460"/>
                    <exon start="85102" stop="85019"/>
                    <exon start="84177" stop="84063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLGFSQRRRSWKMGARGRKRAAPVNTDNVDCNTQKNSEYEQLREKRIKENLERMQKLGIFDISLKLKPVRTPIVRKTPQRLSPVQRSGPTRRSSRLQSATPVSYSEVHLSKIDDSLDGKHHLLREEGAKPEIYTEEHEKLLGSTDLSWTFFVDGYGNDGKRIYDPVKGKTCHQCRQKTLGHRTHCSNCQIVQGQFCGDCLYMRYGEHVLEANKNPNWLCPVCRGICNCSLCRQAKGWAPTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87759" e_stop="87756"/>
            <exon e_start="87698" e_stop="87433"/>
            <exon e_start="86699" e_stop="86460"/>
            <exon e_start="85102" e_stop="85019"/>
            <exon e_start="84177" e_stop="84061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.970" e_score="0.500"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.828" e_score="0.971"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="87759" e_stop="87756" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.970">
            <gDNA_intron_boundary i_start="87755" i_stop="87699" i_length="57"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="87698" e_stop="87433" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87432" i_stop="86700" i_length="733"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="86699" e_stop="86460" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.828">
            <gDNA_intron_boundary i_start="86459" i_stop="85103" i_length="1357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85102" e_stop="85019" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85018" i_stop="84178" i_length="841"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="84177" e_stop="84061" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87759" stop="87756"/>
              <exon start="87698" stop="87433"/>
              <exon start="86699" stop="86582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87433"/>
              <exon start="86699" stop="86460"/>
              <exon start="85102" stop="85019"/>
              <exon start="84177" stop="84061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGT : AGAAGAAGAAGCTGGAAAATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAATACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAGAGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCCATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGGTCCTCCAG : GCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATTGATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATTTACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCATCAGTGCCG : ACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAATTGCCAAATTGTTCAAGGACAATTCTGTGGAGATTGCTTGTATATGAG : ATACGGAGAACATGTACTCGAAGCGAACAAGAATCCGAATTGGCTTTGCCCTGTTTGTCGAGGAATATGTAACTGCAGCTTGTGCCGGCAAGCAAAAGGTTGGGCTCCTACTGGTGC</gDNA_template>
            <first_frame> Q   : *  K  K  K  L  E  N  G  C  S  W  E  E  K  S  C  S  G  E  H  R  Q  C  R  L  Q  Y  P  E  K  F  R  V  R  T  V  E  G  K  K  N  Q  R  K  S  *  E  D  A  K  V  G  D  F  *  H  I  T  Q  T  Q  A  C  *  D  T  H  R  S  Q  N  P  S  A  S  L  S  C  A  A  F  W  T  H  A  P  V  L  Q  :  A  A  E  C  D  T  S  *  L  F  R  G  A  S  V  E  D  *  *  L  L  G  W  *  A  S  F  V  E  G  G  R  G  K  A  R  D  L  H  G  R  T  R  E  I  V  G  F  H  *  F  E  L  D  F  F  C  G  W  I  W  K  *  W  E  E  N  L  *  S  S  Q  R  K  N  L  S  S  V  P  :  T  E  N  S  W  S  S  Y  S  L  *  Q  L  P  N  C  S  R  T  I  L  W  R  L  L  V  Y  E  :  I  R  R  T  C  T  R  S  E  Q  E  S  E  L  A  L  P  C  L  S  R  N  M  *  L  Q  L  V  P  A  S  K  R  L  G  S  Y  W  C </first_frame>
            <second_frame>  S  :  R  R  R  S  W  K  M  G  A  R  G  R  K  R  A  A  P  V  N  T  D  N  V  D  C  N  T  Q  K  N  S  E  Y  E  Q  L  R  E  K  R  I  K  E  N  L  E  R  M  Q  K  L  G  I  F  D  I  S  L  K  L  K  P  V  R  T  P  I  V  R  K  T  P  Q  R  L  S  P  V  Q  R  S  G  P  T  R  R  S  S  R :   L  Q  S  A  T  P  V  S  Y  S  E  V  H  L  S  K  I  D  D  S  L  D  G  K  H  H  L  L  R  E  E  G  A  K  P  E  I  Y  T  E  E  H  E  K  L  L  G  S  T  D  L  S  W  T  F  F  V  D  G  Y  G  N  D  G  K  R  I  Y  D  P  V  K  G  K  T  C  H  Q  C  R :   Q  K  T  L  G  H  R  T  H  C  S  N  C  Q  I  V  Q  G  Q  F  C  G  D  C  L  Y  M  R :   Y  G  E  H  V  L  E  A  N  K  N  P  N  W  L  C  P  V  C  R  G  I  C  N  C  S  L  C  R  Q  A  K  G  W  A  P  T  G   </second_frame>
            <third_frame>   V :   E  E  E  A  G  K  W  V  L  V  G  G  K  E  L  L  R  *  T  P  T  M  S  I  A  I  P  R  K  I  Q  S  T  N  S  *  G  K  K  E  S  K  K  I  L  R  G  C  K  S  W  G  F  L  T  Y  H  S  N  S  S  L  L  G  H  P  S  F  A  K  P  L  S  V  S  L  L  C  S  V  L  D  P  R  A  G  P  P   : G  C  R  V  R  H  Q  L  A  I  Q  R  C  I  C  R  R  L  M  T  P  W  M  V  S  I  I  C  *  G  R  K  G  Q  S  Q  R  F  T  R  K  N  T  R  N  C  W  V  P  L  I  *  A  G  L  F  L  W  M  D  M  E  M  M  G  R  E  S  M  I  Q  S  K  E  K  L  V  I  S  A   : D  R  K  L  L  V  I  V  L  I  V  A  I  A  K  L  F  K  D  N  S  V  E  I  A  C  I  *   : D  T  E  N  M  Y  S  K  R  T  R  I  R  I  G  F  A  L  F  V  E  E  Y  V  T  A  A  C  A  G  K  Q  K  V  G  L  L  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87758" stop="87756"/>
                    <exon start="87698" stop="87433"/>
                    <exon start="86699" stop="86460"/>
                    <exon start="85102" stop="85019"/>
                    <exon start="84177" stop="84063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRRRSWKMGARGRKRAAPVNTDNVDCNTQKNSEYEQLREKRIKENLERMQKLGIFDISLKLKPVRTPIVRKTPQRLSPVQRSGPTRRSSRLQSATPVSYSEVHLSKIDDSLDGKHHLLREEGAKPEIYTEEHEKLLGSTDLSWTFFVDGYGNDGKRIYDPVKGKTCHQCRQKTLGHRTHCSNCQIVQGQFCGDCLYMRYGEHVLEANKNPNWLCPVCRGICNCSLCRQAKGWAPTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="94573" PGL_stop="94861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94573" e_stop="94861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="94573" e_stop="94861" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94573" stop="94861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGTGAAGCAGCTAACCTTATAATCGCCAAACAATTGTTGGAGGGTGACTCCAAATATATATCTCCCATGAATCTTAAACAACTTCGAGATCTCTAAATGTTTTTGTTTCTTTCTTTTTCTCCGCACATTAATTTATCTTGTATTTTGTCTAGTTATATATCCTTTTTTTTCTTTTATTTTACATGATTGTTTTACCGTAAAAAGTTTGATCTTTTGATTGTATTAAATATATTGTGGAAGAGAAGTGAAGGAAATTAAAGTTCTCTGTCTTCCAATTGTGTTCCTC</gDNA_template>
            <first_frame> P  S  E  A  A  N  L  I  I  A  K  Q  L  L  E  G  D  S  K  Y  I  S  P  M  N  L  K  Q  L  R  D  L  *  M  F  L  F  L  S  F  S  P  H  I  N  L  S  C  I  L  S  S  Y  I  S  F  F  F  F  Y  F  T  *  L  F  Y  R  K  K  F  D  L  L  I  V  L  N  I  L  W  K  R  S  E  G  N  *  S  S  L  S  S  N  C  V  P  </first_frame>
            <second_frame>  Q  V  K  Q  L  T  L  *  S  P  N  N  C  W  R  V  T  P  N  I  Y  L  P  *  I  L  N  N  F  E  I  S  K  C  F  C  F  F  L  F  L  R  T  L  I  Y  L  V  F  C  L  V  I  Y  P  F  F  S  F  I  L  H  D  C  F  T  V  K  S  L  I  F  *  L  Y  *  I  Y  C  G  R  E  V  K  E  I  K  V  L  C  L  P  I  V  F  L </second_frame>
            <third_frame>   K  *  S  S  *  P  Y  N  R  Q  T  I  V  G  G  *  L  Q  I  Y  I  S  H  E  S  *  T  T  S  R  S  L  N  V  F  V  S  F  F  F  S  A  H  *  F  I  L  Y  F  V  *  L  Y  I  L  F  F  L  L  F  Y  M  I  V  L  P  *  K  V  *  S  F  D  C  I  K  Y  I  V  E  E  K  *  R  K  L  K  F  S  V  F  Q  L  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0226F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="109691" PGL_stop="109447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109691" e_stop="109447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="109691" e_stop="109447" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109691" stop="109447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCTGCTGGCCTGGCGTTTGGAATGGAGATGATTGCTGCTGCCCGGGAGTTTGGAATGGAGACGCCTGTTGCTGTCCCGGAGTTTGGAATAGCGACGGCTGTTGTGCCTGTGGAGTGAAAGTGAACGCCATTGGCTATTGCAATGATTCGCTCATCGAAGATTTCCACAACAATTGAATTAGGGCAAAAGCCGAAGAAAGCTCGAAAAAATGTAGAAATGGCTACTCAAACAACTTTTCTTTGA</gDNA_template>
            <first_frame> L  L  L  A  W  R  L  E  W  R  *  L  L  L  P  G  S  L  E  W  R  R  L  L  L  S  R  S  L  E  *  R  R  L  L  C  L  W  S  E  S  E  R  H  W  L  L  Q  *  F  A  H  R  R  F  P  Q  Q  L  N  *  G  K  S  R  R  K  L  E  K  M  *  K  W  L  L  K  Q  L  F  F   </first_frame>
            <second_frame>  C  C  W  P  G  V  W  N  G  D  D  C  C  C  P  G  V  W  N  G  D  A  C  C  C  P  G  V  W  N  S  D  G  C  C  A  C  G  V  K  V  N  A  I  G  Y  C  N  D  S  L  I  E  D  F  H  N  N  *  I  R  A  K  A  E  E  S  S  K  K  C  R  N  G  Y  S  N  N  F  S  L  </second_frame>
            <third_frame>   A  A  G  L  A  F  G  M  E  M  I  A  A  A  R  E  F  G  M  E  T  P  V  A  V  P  E  F  G  I  A  T  A  V  V  P  V  E  *  K  *  T  P  L  A  I  A  M  I  R  S  S  K  I  S  T  T  I  E  L  G  Q  K  P  K  K  A  R  K  N  V  E  M  A  T  Q  T  T  F  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0226F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="109753" PGL_stop="116991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109753" e_stop="110002"/>
            <exon e_start="110113" e_stop="110227"/>
            <exon e_start="110968" e_stop="111441"/>
            <exon e_start="112299" e_stop="112800"/>
            <exon e_start="115858" e_stop="115898"/>
            <exon e_start="116579" e_stop="116991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.797" acc_prob="0.998" e_score="0.836"/>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="0.983"/>
          <exon-intron don_prob="0.798" acc_prob="0.981" e_score="0.964"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.836">
            <gDNA_exon_boundary e_start="109753" e_stop="110002" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.797" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110003" i_stop="110112" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="110113" e_stop="110227" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110228" i_stop="110967" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="110968" e_stop="111441" e_length="474"/>
          </exon>
          <intron i_serial="3" don_prob="0.798" acc_prob="0.981">
            <gDNA_intron_boundary i_start="111442" i_stop="112298" i_length="857"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112299" e_stop="112800" e_length="502"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115858" e_stop="115898" e_length="41"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116579" e_stop="116991" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109753" stop="110002"/>
              <exon start="110113" stop="110227"/>
              <exon start="110968" stop="111415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110197" stop="110227"/>
              <exon start="110968" stop="111340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111123" stop="111441"/>
              <exon start="112299" stop="112652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111413" stop="111441"/>
              <exon start="112299" stop="112800"/>
              <exon start="115858" stop="115898"/>
              <exon start="116579" stop="116739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112593" stop="112800"/>
              <exon start="115858" stop="115898"/>
              <exon start="116579" stop="116957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112668" stop="112800"/>
              <exon start="115858" stop="115898"/>
              <exon start="116579" stop="116866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112736" stop="112800"/>
              <exon start="115858" stop="115898"/>
              <exon start="116579" stop="116991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCGCAACCACAACAGCAACAACAACAACTTCAATTTCAGCAGCAGCAACAACAACTTCAGCAACAGCAACAACTGCAATTGCAGCAACAACTGCAATTGCAGCAACAACAACAGCAACTGCTGCAGCAACAACAGTCATCACAGCAGCAACAATTGTACCTTTTCACCAACGATAAGACTCCTGCCACCTATAGTACCAAATGGACAGACCTCCACCCGGACTCGCAGAAGCTTCTGTTGCAAATTGA : GGAGAGGATACTGGAATATAGGGATGAAAGCCAAAGGCTTGACCAGTGTAGCCGACTTTATGATTCATCAGTGTCAAATGATGGTTTTGAGTTGGATGCAAGCCGCAGCATTCAG : GAACTTGGTGGAATTAGTACATCAATGGAAAGACAAAAGGCTATCTTGCAAGAGCTAATGATTGTTGTTAAAGATATGCTGCGCAATACAGAGGTTGCAGTGCGCTCTTTTATGATGTTACGCCCAAAATTTCTTCATCAAAGTGCACCTGCTACTGCAAGCGCTACTGCTCCATCACAGGCATCAGGTGCAACTGTAGCTCCAACAGCATCTGGTTCAGCTCAGTCTACCCCCAATGCGGCAATTTTTGATTTTTACAGTGGGATACCAAAAAAGCCCTCTCCCTTTTTGCAGCAAACCGTAGCAAGATTTGAGAAATATCTTGTAGAATGCCGACAATGGGTTGAAGAATTGGAGCAGTTGATGGCCTTAGATTCTGACAGGAATTCTATGAACTCCAATTCATCTCTGTTGCAGTCTCTTCCAAATGTCATGTCGAATGTGCATGGATTTTTTGTTCATGTTGCTGCAAAG : GTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG : GGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCT : AAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTGATTGAGATCTCATCTGTTGTAGACGCGTTCCCCC</gDNA_template>
            <first_frame> F  R  N  H  N  S  N  N  N  N  F  N  F  S  S  S  N  N  N  F  S  N  S  N  N  C  N  C  S  N  N  C  N  C  S  N  N  N  S  N  C  C  S  N  N  S  H  H  S  S  N  N  C  T  F  S  P  T  I  R  L  L  P  P  I  V  P  N  G  Q  T  S  T  R  T  R  R  S  F  C  C  K  L   : R  R  G  Y  W  N  I  G  M  K  A  K  G  L  T  S  V  A  D  F  M  I  H  Q  C  Q  M  M  V  L  S  W  M  Q  A  A  A  F  R :   N  L  V  E  L  V  H  Q  W  K  D  K  R  L  S  C  K  S  *  *  L  L  L  K  I  C  C  A  I  Q  R  L  Q  C  A  L  L  *  C  Y  A  Q  N  F  F  I  K  V  H  L  L  L  Q  A  L  L  L  H  H  R  H  Q  V  Q  L  *  L  Q  Q  H  L  V  Q  L  S  L  P  P  M  R  Q  F  L  I  F  T  V  G  Y  Q  K  S  P  L  P  F  C  S  K  P  *  Q  D  L  R  N  I  L  *  N  A  D  N  G  L  K  N  W  S  S  *  W  P  *  I  L  T  G  I  L  *  T  P  I  H  L  C  C  S  L  F  Q  M  S  C  R  M  C  M  D  F  L  F  M  L  L  Q  R :   *  R  V  F  I  S  T  L  N  Q  *  K  Q  H  T  W  L  I  S  A  V  E  G  M  G  A  I  L  F  L  R  L  I  G  G  K  Q  L  N  K  R  Q  L  R  K  G  Y  I  Q  H  C  I  C  P  Q  F  H  N  H  Q  L  K  *  Q  D  *  F  P  A  Q  Q  H  L  G  Y  P  V  H  H  K  R  H  L  Q  F  L  L  P  Q  Q  E  V  D  P  H  Y  L  L  P  H  P  L  L  L  H  L  L  P  C  S  L  L  Q  Q  C  Q  L  Q  S  P  L  C  S  E  H  L  V  L  P  P  K  V  H  S  L  G  P  C  P  L  Q  L  Q  P  L  V  L  H  Y  L  V  L  P  Q  L  L  E  F  H  L  L  Q  H  L  L  L  Q  :  G  L  H  *  H  Q  G  Q  A  L  G  L  N  L :   R  L  E  Q  K  V  V  Q  A  D  A  R  E  C  V  W  *  F  I  H  L  R  F  *  W  M  E  I  S  M  L  L  V  I  C  H  S  S  L  A  K  L  K  H  F  D  K  S  *  K  F  Y  L  P  P  V  S  L  L  W  T  S  I  S  A  E  M  F  V  H  K  D  V  A  A  M  L  C  H  T  I  F  H  L  I  L  L  I  *  C  I  K  L  D  F  V  L  E  S  L  L  D  D  F  S  C  P  L  *  K  *  N  W  L  Y  L  *  C  F  G  Y  L  C  K  H  L  I  E  I  S  S  V  V  D  A  F  P  </first_frame>
            <second_frame>  F  A  T  T  T  A  T  T  T  T  S  I  S  A  A  A  T  T  T  S  A  T  A  T  T  A  I  A  A  T  T  A  I  A  A  T  T  T  A  T  A  A  A  T  T  V  I  T  A  A  T  I  V  P  F  H  Q  R  *  D  S  C  H  L  *  Y  Q  M  D  R  P  P  P  G  L  A  E  A  S  V  A  N  *  :  G  E  D  T  G  I  *  G  *  K  P  K  A  *  P  V  *  P  T  L  *  F  I  S  V  K  *  W  F  *  V  G  C  K  P  Q  H  S   : G  T  W  W  N  *  Y  I  N  G  K  T  K  G  Y  L  A  R  A  N  D  C  C  *  R  Y  A  A  Q  Y  R  G  C  S  A  L  F  Y  D  V  T  P  K  I  S  S  S  K  C  T  C  Y  C  K  R  Y  C  S  I  T  G  I  R  C  N  C  S  S  N  S  I  W  F  S  S  V  Y  P  Q  C  G  N  F  *  F  L  Q  W  D  T  K  K  A  L  S  L  F  A  A  N  R  S  K  I  *  E  I  S  C  R  M  P  T  M  G  *  R  I  G  A  V  D  G  L  R  F  *  Q  E  F  Y  E  L  Q  F  I  S  V  A  V  S  S  K  C  H  V  E  C  A  W  I  F  C  S  C  C  C  K   : G  R  E  Y  S  S  V  H  *  I  N  E  N  S  I  P  G  *  S  A  P  S  R  G  W  E  R  S  F  S  *  G  *  S  A  G  N  S  *  T  R  G  S  C  E  K  G  T  S  N  I  A  F  A  H  N  F  T  T  I  N  S  S  S  R  I  N  F  Q  L  S  S  T  W  G  I  R  Y  T  T  N  V  I  C  S  F  F  C  L  S  R  K  W  I  L  T  I  C  Y  P  I  R  C  C  F  I  F  F  P  V  H  Y  S  N  N  V  S  S  S  L  L  F  V  R  N  I  W  C  F  P  P  K  F  T  L  W  V  L  V  H  F  N  S  S  L  *  Y  S  I  I  W  F  Y  P  S  F  W  S  F  I  F  C  N  T  F  C  F  R :   A  C  T  S  I  R  G  K  L  W  D  S  I   : *  D  *  S  K  K  S  Y  K  Q  T  L  E  N  V  F  G  N  S  Y  I  *  D  S  N  G  W  K  S  L  C  Y  W  L  S  V  T  V  A  W  Q  S  S  S  I  L  T  N  H  E  N  F  I  Y  L  Q  F  H  Y  C  G  P  V  S  L  Q  R  C  S  F  T  R  M  S  R  Q  C  Y  V  I  L  F  F  T  *  F  C  *  S  S  V  S  S  L  I  L  Y  S  S  L  F  *  M  I  S  V  A  H  C  R  N  R  T  G  Y  I  C  D  A  L  D  T  C  V  N  T  *  L  R  S  H  L  L  *  T  R  S  P </second_frame>
            <third_frame>   S  Q  P  Q  Q  Q  Q  Q  Q  L  Q  F  Q  Q  Q  Q  Q  Q  L  Q  Q  Q  Q  Q  L  Q  L  Q  Q  Q  L  Q  L  Q  Q  Q  Q  Q  Q  L  L  Q  Q  Q  Q  S  S  Q  Q  Q  Q  L  Y  L  F  T  N  D  K  T  P  A  T  Y  S  T  K  W  T  D  L  H  P  D  S  Q  K  L  L  L  Q  I  E :   E  R  I  L  E  Y  R  D  E  S  Q  R  L  D  Q  C  S  R  L  Y  D  S  S  V  S  N  D  G  F  E  L  D  A  S  R  S  I  Q  :  E  L  G  G  I  S  T  S  M  E  R  Q  K  A  I  L  Q  E  L  M  I  V  V  K  D  M  L  R  N  T  E  V  A  V  R  S  F  M  M  L  R  P  K  F  L  H  Q  S  A  P  A  T  A  S  A  T  A  P  S  Q  A  S  G  A  T  V  A  P  T  A  S  G  S  A  Q  S  T  P  N  A  A  I  F  D  F  Y  S  G  I  P  K  K  P  S  P  F  L  Q  Q  T  V  A  R  F  E  K  Y  L  V  E  C  R  Q  W  V  E  E  L  E  Q  L  M  A  L  D  S  D  R  N  S  M  N  S  N  S  S  L  L  Q  S  L  P  N  V  M  S  N  V  H  G  F  F  V  H  V  A  A  K  :  V  E  S  I  H  Q  Y  I  E  S  M  K  T  A  Y  L  A  D  Q  R  R  R  G  D  G  S  D  P  F  L  E  A  D  R  R  E  T  A  K  Q  E  A  A  A  K  R  V  H  P  T  L  H  L  P  T  I  S  Q  P  S  T  Q  V  A  G  L  I  S  S  S  A  A  P  G  V  S  G  T  P  Q  T  S  S  A  V  S  S  A  S  A  G  S  G  S  S  L  F  A  T  P  S  V  A  A  S  S  S  S  L  F  T  T  P  T  M  S  A  P  V  S  S  L  F  G  T  S  G  A  S  P  Q  S  S  L  F  G  S  L  S  T  S  T  P  A  F  S  T  P  L  F  G  S  T  P  A  S  G  V  S  S  F  A  T  P  F  A  S   : G  P  A  L  A  S  G  A  S  F  G  T  Q  S  :  K  T  R  A  K  S  R  T  S  R  R  *  R  M  C  L  V  I  H  T  S  E  I  L  M  D  G  N  L  Y  A  T  G  Y  L  S  Q  *  L  G  K  A  Q  A  F  *  Q  I  M  K  I  L  S  T  S  S  F  I  I  V  D  Q  Y  L  C  R  D  V  R  S  Q  G  C  R  G  N  V  M  S  Y  Y  F  S  L  N  S  A  D  L  V  Y  Q  A  *  F  C  T  R  V  S  S  R  *  F  Q  L  P  I  V  E  I  E  L  V  I  F  V  M  L  W  I  L  V  *  T  L  D  *  D  L  I  C  C  R  R  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109755" stop="110002"/>
                    <exon start="110113" stop="110227"/>
                    <exon start="110968" stop="111441"/>
                    <exon start="112299" stop="112800"/>
                    <exon start="115858" stop="115898"/>
                    <exon start="116579" stop="116614"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQPQQQQQQLQFQQQQQQLQQQQQLQLQQQLQLQQQQQQLLQQQQSSQQQQLYLFTNDKTPATYSTKWTDLHPDSQKLLLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFELDASRSIQELGGISTSMERQKAILQELMIVVKDMLRNTEVAVRSFMMLRPKFLHQSAPATASATAPSQASGATVAPTASGSAQSTPNAAIFDFYSGIPKKPSPFLQQTVARFEKYLVECRQWVEELEQLMALDSDRNSMNSNSSLLQSLPNVMSNVHGFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKQEAAAKRVHPTLHLPTISQPSTQVAGLISSSAAPGVSGTPQTSSAVSSASAGSGSSLFATPSVAASSSSLFTTPTMSAPVSSLFGTSGASPQSSLFGSLSTSTPAFSTPLFGSTPASGVSSFATPFASGPALASGASFGTQSKTRAKSRTSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="118889" PGL_stop="118105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118889" e_stop="118105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="118889" e_stop="118105" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118889" stop="118111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118888" stop="118105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGTTTTCATTAATATCCTCGATAAGGATGTTGTCCTTTGGACTGAAATGATTGCTGGACATTGTAGGATCGGTAATGCTGAGAACTCTATTAAATTGTTCCATGAGATGTTACAGGAAGGCCACAAGGCTGATGAATTTACTCTTACCAGTGCCTTAAGCGTGTGTGCTGAAGTGGCAACAGTGAGGCAGGGTGAAGTGATTCATTCCCTGGCTGCCAAAACAGGCTACAGTGCTGACATGACCGTTTGTGGGAGTCTGGTTGATATGTATGCTAAAATTGGAAACCTTGCAGCTGCAGATCTTATGTTTTCCAGTGTCACCATGCCTAATCTAATATGCTGGAACTCAATGCTTGGTGCATATGGTTACCATGGGAAGGCAGAGGAGGCATTTAAGATGTTCAATGATATTTTACAACATGGCCTAAAACCAGATCATGTAACATTTATCTCTCTGCTTGCAGCATGTAGCCACTGTGGTTTGGTCAACCATGGTATATATTTCTGGAATAAAATGAAAGAAAATGGCTTAAAACCAAGCCTGAAGCATTACTCCTGCATGATCACTTTGTTGAGTCGAGCTGGATTGCTGGAGGAAGCTGAACATGTTATAATGGAATCACCCTTTGGAGTTGAATGTCTTCAATTATGGAGAATTTTACTGAGCTCCTGTGTAAGTAAAGGAAACCAGATAATAGGAATACGTGTTGCGAAGCAGGTTTTGGGGATGGATGCAGAAGACAGTGCAACAAATGTACTGCTTTCCAATTTATTTGCTTCAA</gDNA_template>
            <first_frame> K  G  F  H  *  Y  P  R  *  G  C  C  P  L  D  *  N  D  C  W  T  L  *  D  R  *  C  *  E  L  Y  *  I  V  P  *  D  V  T  G  R  P  Q  G  *  *  I  Y  S  Y  Q  C  L  K  R  V  C  *  S  G  N  S  E  A  G  *  S  D  S  F  P  G  C  Q  N  R  L  Q  C  *  H  D  R  L  W  E  S  G  *  Y  V  C  *  N  W  K  P  C  S  C  R  S  Y  V  F  Q  C  H  H  A  *  S  N  M  L  E  L  N  A  W  C  I  W  L  P  W  E  G  R  G  G  I  *  D  V  Q  *  Y  F  T  T  W  P  K  T  R  S  C  N  I  Y  L  S  A  C  S  M  *  P  L  W  F  G  Q  P  W  Y  I  F  L  E  *  N  E  R  K  W  L  K  T  K  P  E  A  L  L  L  H  D  H  F  V  E  S  S  W  I  A  G  G  S  *  T  C  Y  N  G  I  T  L  W  S  *  M  S  S  I  M  E  N  F  T  E  L  L  C  K  *  R  K  P  D  N  R  N  T  C  C  E  A  G  F  G  D  G  C  R  R  Q  C  N  K  C  T  A  F  Q  F  I  C  F   </first_frame>
            <second_frame>  K  V  F  I  N  I  L  D  K  D  V  V  L  W  T  E  M  I  A  G  H  C  R  I  G  N  A  E  N  S  I  K  L  F  H  E  M  L  Q  E  G  H  K  A  D  E  F  T  L  T  S  A  L  S  V  C  A  E  V  A  T  V  R  Q  G  E  V  I  H  S  L  A  A  K  T  G  Y  S  A  D  M  T  V  C  G  S  L  V  D  M  Y  A  K  I  G  N  L  A  A  A  D  L  M  F  S  S  V  T  M  P  N  L  I  C  W  N  S  M  L  G  A  Y  G  Y  H  G  K  A  E  E  A  F  K  M  F  N  D  I  L  Q  H  G  L  K  P  D  H  V  T  F  I  S  L  L  A  A  C  S  H  C  G  L  V  N  H  G  I  Y  F  W  N  K  M  K  E  N  G  L  K  P  S  L  K  H  Y  S  C  M  I  T  L  L  S  R  A  G  L  L  E  E  A  E  H  V  I  M  E  S  P  F  G  V  E  C  L  Q  L  W  R  I  L  L  S  S  C  V  S  K  G  N  Q  I  I  G  I  R  V  A  K  Q  V  L  G  M  D  A  E  D  S  A  T  N  V  L  L  S  N  L  F  A  S  </second_frame>
            <third_frame>   R  F  S  L  I  S  S  I  R  M  L  S  F  G  L  K  *  L  L  D  I  V  G  S  V  M  L  R  T  L  L  N  C  S  M  R  C  Y  R  K  A  T  R  L  M  N  L  L  L  P  V  P  *  A  C  V  L  K  W  Q  Q  *  G  R  V  K  *  F  I  P  W  L  P  K  Q  A  T  V  L  T  *  P  F  V  G  V  W  L  I  C  M  L  K  L  E  T  L  Q  L  Q  I  L  C  F  P  V  S  P  C  L  I  *  Y  A  G  T  Q  C  L  V  H  M  V  T  M  G  R  Q  R  R  H  L  R  C  S  M  I  F  Y  N  M  A  *  N  Q  I  M  *  H  L  S  L  C  L  Q  H  V  A  T  V  V  W  S  T  M  V  Y  I  S  G  I  K  *  K  K  M  A  *  N  Q  A  *  S  I  T  P  A  *  S  L  C  *  V  E  L  D  C  W  R  K  L  N  M  L  *  W  N  H  P  L  E  L  N  V  F  N  Y  G  E  F  Y  *  A  P  V  *  V  K  E  T  R  *  *  E  Y  V  L  R  S  R  F  W  G  W  M  Q  K  T  V  Q  Q  M  Y  C  F  P  I  Y  L  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118888" stop="118106"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVFINILDKDVVLWTEMIAGHCRIGNAENSIKLFHEMLQEGHKADEFTLTSALSVCAEVATVRQGEVIHSLAAKTGYSADMTVCGSLVDMYAKIGNLAAADLMFSSVTMPNLICWNSMLGAYGYHGKAEEAFKMFNDILQHGLKPDHVTFISLLAACSHCGLVNHGIYFWNKMKENGLKPSLKHYSCMITLLSRAGLLEEAEHVIMESPFGVECLQLWRILLSSCVSKGNQIIGIRVAKQVLGMDAEDSATNVLLSNLFAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="120008" PGL_stop="119330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120008" e_stop="119330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="120008" e_stop="119330" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120008" stop="119330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120008" stop="119422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120004" stop="119719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACCAACTTATGCCACCATTGAGTGAGGCCTCTTCCATAGCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCCATTGGACTTTCCATTTGCTTGCTCAATTGCAAAGTGAGAGCCTAAGACCAAATGGGTTAACTTTTACTAGTCTTTTAAATGCGTGTTCAGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCATTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTTTTGGATTGTGCAGAGAAAGTTTTTTGCTACATGTATGATAAAGATTCCGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTAAGACCGTGGAAGGCCTTCAGCTGTTTGGCACCATGTTGAGGACTGGAGTTGTTCCTACGAATTTCACTTATACGACATTGTTGAGTGCTTGT</gDNA_template>
            <first_frame> L  P  T  Y  A  T  I  E  *  G  L  F  H  S  S  S  C  H  Q  *  V  Q  L  H  N  L  N  Q  Q  S  T  P  A  P  C  P  H  P  H  F  C  T  R  D  L  Q  I  S  L  C  I  Q  Q  H  S  L  Y  V  R  P  M  W  V  Y  P  R  L  T  Y  P  V  R  Q  N  A  *  Q  K  R  C  L  F  Q  R  P  H  F  R  L  F  S  I  P  P  P  C  P  L  D  F  P  F  A  C  S  I  A  K  *  E  P  K  T  K  W  V  N  F  Y  *  S  F  K  C  V  F  R  Y  Q  E  S  G  I  R  L  Y  A  S  F  P  V  Y  K  V  W  I  F  I  R  C  V  R  S  N  L  C  S  W  D  V  L  K  L  W  S  F  G  L  C  R  E  S  F  L  L  H  V  *  *  R  F  R  G  L  E  Y  S  I  L  W  V  F  G  K  W  *  D  R  G  R  P  S  A  V  W  H  H  V  E  D  W  S  C  S  Y  E  F  H  L  Y  D  I  V  E  C  L  </first_frame>
            <second_frame>  Y  Q  L  M  P  P  L  S  E  A  S  S  I  A  A  V  V  I  N  K  C  N  S  I  I  S  I  S  K  A  R  Q  L  H  A  L  I  L  T  S  V  P  A  T  S  R  S  P  Y  V  F  N  N  I  L  S  M  Y  A  R  C  G  S  I  Q  D  S  H  I  L  F  D  K  M  P  D  R  N  V  V  S  F  N  A  L  I  S  A  Y  S  R  Y  R  H  L  A  H  W  T  F  H  L  L  A  Q  L  Q  S  E  S  L  R  P  N  G  L  T  F  T  S  L  L  N  A  C  S  G  I  K  N  Q  V  L  G  S  M  L  H  S  Q  C  I  K  F  G  F  L  Y  D  V  C  V  Q  T  S  V  L  G  M  Y  L  N  C  G  V  L  D  C  A  E  K  V  F  C  Y  M  Y  D  K  D  S  V  A  W  N  T  L  F  F  G  Y  L  E  N  G  K  T  V  E  G  L  Q  L  F  G  T  M  L  R  T  G  V  V  P  T  N  F  T  Y  T  T  L  L  S  A  C </second_frame>
            <third_frame>   T  N  L  C  H  H  *  V  R  P  L  P  *  Q  Q  L  S  S  I  S  A  T  P  *  S  Q  S  A  K  H  A  S  S  M  P  S  S  S  L  L  Y  P  R  P  P  D  L  L  M  Y  S  T  T  F  S  L  C  T  P  D  V  G  L  S  K  T  H  I  S  C  S  T  K  C  L  T  E  T  L  S  L  S  T  P  S  F  P  P  I  L  D  T  A  T  L  P  I  G  L  S  I  C  L  L  N  C  K  V  R  A  *  D  Q  M  G  *  L  L  L  V  F  *  M  R  V  Q  V  S  R  I  R  Y  *  A  L  C  F  I  P  S  V  *  S  L  D  F  Y  T  M  C  A  F  K  P  L  F  L  G  C  T  *  I  V  E  F  W  I  V  Q  R  K  F  F  A  T  C  M  I  K  I  P  W  L  G  I  L  Y  S  L  G  I  W  K  M  V  R  P  W  K  A  F  S  C  L  A  P  C  *  G  L  E  L  F  L  R  I  S  L  I  R  H  C  *  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120007" stop="119330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQLMPPLSEASSIAAVVINKCNSIISISKARQLHALILTSVPATSRSPYVFNNILSMYARCGSIQDSHILFDKMPDRNVVSFNALISAYSRYRHLAHWTFHLLAQLQSESLRPNGLTFTSLLNACSGIKNQVLGSMLHSQCIKFGFLYDVCVQTSVLGMYLNCGVLDCAEKVFCYMYDKDSVAWNTLFFGYLENGKTVEGLQLFGTMLRTGVVPTNFTYTTLLSAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="122155" PGL_stop="122606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122155" e_stop="122606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="122155" e_stop="122606" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122155" stop="122606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122156" stop="122604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGCAGCCGTTCTGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAATCAGGGGGTACTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAAAATTAAGAGGGATTTACCCTTCTTTGATGTTGCATTCAGTCTAAATTATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCTTTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTCTGTTATTTACAGTGGTGTGATAGGTATATTTAAAATTTTATTTGAAAAATAATGCACCAATGTGATCATTAACTGAGTTGTGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGACTT</gDNA_template>
            <first_frame> L  N  I  R  C  W  Y  E  F  L  L  N  S  F  S  F  T  S  I  C  S  R  S  V  Q  F  K  S  I  S  F  *  Y  *  I  I  C  L  L  R  Q  I  R  G  Y  S  T  P  R  S  S  L  N  L  T  S  T  C  T  V  F  K  I  K  R  D  L  P  F  F  D  V  A  F  S  L  N  Y  S  N  *  P  I  R  W  I  *  *  G  V  L  V  L  C  V  C  S  N  N  H  F  F  H  L  C  S  F  C  Y  L  Q  W  C  D  R  Y  I  *  N  F  I  *  K  I  M  H  Q  C  D  H  *  L  S  C  V  C  G  C  T  N  C  P  F  Y  R  Y  S  *  F  D   </first_frame>
            <second_frame>  *  I  *  D  V  G  M  N  F  F  S  T  L  S  H  S  L  A  S  A  A  V  L  F  N  S  S  P  F  P  S  N  T  K  *  F  V  F  *  G  K  S  G  G  T  L  H  L  E  V  L  *  I  S  H  P  L  A  L  Y  L  K  L  R  G  I  Y  P  S  L  M  L  H  S  V  *  I  I  P  I  S  P  L  G  G  Y  D  E  G  F  L  F  F  A  F  A  L  I  I  I  S  S  I  Y  A  P  S  V  I  Y  S  G  V  I  G  I  F  K  I  L  F  E  K  *  C  T  N  V  I  I  N  *  V  V  F  V  V  A  L  T  V  H  F  T  D  T  H  D  S  T  </second_frame>
            <third_frame>   K  Y  K  M  L  V  *  I  S  S  Q  L  F  L  I  H  *  H  L  Q  P  F  C  S  I  Q  V  H  F  L  L  I  L  N  N  L  S  F  E  A  N  Q  G  V  L  Y  T  *  K  F  S  K  S  H  I  H  L  H  C  I  *  N  *  E  G  F  T  L  L  *  C  C  I  Q  S  K  L  F  Q  L  A  H  *  V  D  M  M  R  G  S  C  S  L  R  L  L  *  *  S  F  L  P  F  M  L  L  L  L  F  T  V  V  *  *  V  Y  L  K  F  Y  L  K  N  N  A  P  M  *  S  L  T  E  L  C  L  W  L  H  *  L  S  I  L  Q  I  L  M  I  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0226F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 102 chains have been computed
$ 
$ memory statistics:
$ 278048 bytes spliced alignments in total
$ 52 spliced alignments have been stored
$ 5347 bytes was the average size of a spliced alignment
$ 29072 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1453 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 119 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:17:00
-->
