<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:29:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0628" ref_strand="+" ref_description="T0628">
      <seq>gtactctggagtaggagcagccattgaatacgccgttcttcatcttaaggtggagaacatcgttgtcattggccacagtgcttgtggaggtatcaaaggtctcatgtcactacctgaagatggtagtgaatcaactgcctttattgaggattgggtaaaaatttgtttacctgccaaggcaaaggttctggccgatcacggagggaaagaatttgcacatcaatgcacagcttgtgagaaggaagctgtgaacgtttcacttggaaatctgcttacgtatccattcgtgagagaaggattggtgaagaaaacattggcattgaagggaggttactatgatttcttgaagggtggatttgagctgtggggacttgagttcggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="17096" stop="18237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17396" g_stop="17530" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17608" g_stop="17713" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="241" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17794" g_stop="17937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="385" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="T0628" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="T0628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17396" e_stop="17530"/>
          <exon e_start="17608" e_stop="17713"/>
          <exon e_start="17794" e_stop="17937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACGTACGTCACTCTATAAATCTATTCATTCAAAACACTTATCCTTAACAGATGATTGATTAATAATCTAATATACGCAGTGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGTAAAATTCAAATTTAACTTTTTGATTATCAATTAATTACATATATAGCAGTATTTTATAATTGATGAAAAATGTTGCAGGAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTT</genome_strand>
        <mrna_strand>GTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC.............................................................................TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG................................................................................GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCTTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27925" ref_strand="+" ref_description="C2_At3g27925">
      <seq>tcctctttgctctcaccagttgtcttcttaacaatggctgcatcttcacactccctagcttcttctgcttgcttctccacaactccggcacggaaattttccggctcagatcgatttcaacttgctaagtctttactctgccggaaaatacctggtttctccggcagtgtggtctgcgctcggcgtatttgctctaactatgcctcttccggtgaccagtccaactacgggaagaagcttatggatagtatttttgtggcatgcacttccgttgccttgtctttctctctctatatagcagacgttgaccctgcctcggcttttgtagtcacttcacccaggaaattgcagactgatgaacttgctactgttcgtctcttccaagagaatacaccttccgttgtgtatattactaatcttgcttccaggcaggatatgttcacactggatgtatttgaggtgcctcaagggtctgggtcaggcttcgtctgggataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcagagtgactcttgctgatcaaactacttatgatgcaaaagttgttggatttgaccaagataaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtatcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgcccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttctagatagttctggaaatcttattggaataaatactgctatatattctccttccggtgcatcatcaggtgttggattttcaattccagttgatactgtcagtggcattgttgatcagttagtgcagtttgggaaagtcacaaggccaattttgggcataaagtttgcacctgatcagtccgttgagcaactgggagtcactggagtacttgtcctggatgctcctccaaatggtcctgcaggcaaagcaggtcttctacctactaaacgtgattcctacggaagacttattttaggtgatataatcacatctataaatggaaagaaggtctctaatggcaccgacttgtacagaattcttgaccaatgcaaagttggagaaaaggtaattgtggaagtgctgcgtggggatcagaaagagaagatccctgtacttctggaaccaaagcctgaagaatcgtagttcctcaaatggatagagtatgtgttgatatgcatttcttggcgaacaagcccatattattagtgcatcaattgttgaatggttgtgtatatacaaaacaacgcttaaaactagggtgcaagcaatatagttgggagtctaacactgctgcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggggggggccgggccccctttccccctttgggggggtttttaaaaatttcggggggggtttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20177" stop="95714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20477" g_stop="20904" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="551" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="723" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="761" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="960" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23245" g_stop="23397" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="961" r_stop="1113" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23598" g_stop="23732" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1114" r_stop="1248" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24189" g_stop="24421" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1249" r_stop="1481" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24422" i_stop="24983" i_length="562">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24984" g_stop="25014" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1482" r_stop="1512" r_length="31" r_score="0.645"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25015" i_stop="25509" i_length="495">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25510" g_stop="25548" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1513" r_stop="1551" r_length="39" r_score="0.769"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25549" i_stop="25812" i_length="264">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.419" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25813" g_stop="25843" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1552" r_stop="1580" r_length="29" r_score="0.484"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25844" i_stop="26027" i_length="184">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.204" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="26028" g_stop="26064" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1581" r_stop="1617" r_length="37" r_score="0.541"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="C2_At3g27925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1619</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g27925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20477" e_stop="20904"/>
          <exon e_start="21088" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23397"/>
          <exon e_start="23598" e_stop="23732"/>
          <exon e_start="24189" e_stop="24421"/>
          <exon e_start="24984" e_stop="25014"/>
          <exon e_start="25510" e_stop="25548"/>
          <exon e_start="25813" e_stop="25843"/>
          <exon e_start="26028" e_stop="26064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAGGTGATCTATCAATGAGGATGGTCCTTTTTTTTTTTTCCTTATATGTTAGTAATTCACGTGCATTTGAGTTTGTAGATATAGTGCTAGATGAAAGTCTGCTAGATGTATTTCCTGTTATTGTAATTGCCGTCCACCTTTGTTTTTCCGGTTTGGTTAATTTGGATTCCGTTTGTGATATAATAGGCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCAGTATGTTATTTCCTGTATCTTTTCTCTTGACATTCCTTACCAGTTTCTCCTTCCTTTTATACACTATAATTATCAGCAGTTTCCACCAGTTATATCACCCTACCGATTTTCTTTCATGTGATTGTTTGTACAAGCCAGTATAAATTTGTGACCGACATGATGAGAAACCGAATATGAGATGTTAAATCTTGTAAATGCAGGGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAGGTAATTCTCATACATCTATTACAAAAATTTTCATCTATATTGTTGGCTTAGAATTCATATGGAGTACAGAGAATTTCTCAAGCATACACCAACTCGCAACGCTTTTAGATAAACATCATATTTGGAATTGCACCTTTGCTTGCATGAAACTTTATTAGTTGATCTTCCTTTTTATTTCTGCAACTTTATTTAAGTGGTCTTTAAGAATATGAATAGTTAGGTATTTGACCTTGATATTGACAGTAGTAATGTTTCTCTTATCAATCTTGCTAAATATTTTGTTTTCCCCAAGTTTGTATACTTGCACATACTTTTTCATTAACATTTCCATTAGCTTTTCTCCTTCCAGTAATTATGAGATAATTGGAAAGTATTCAGTATGAAAAGGTAGTGAAACTTGGAACTACATTTGTGGAAATTGTAGAAAGCTAAGCTTACGGCTGATGTTATGAACAGGTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAAATATTTCTACTATATTAGATATCCTCAAATTGTATAATGTTAGGTAAGATGGGTGTCCACTTAACGGGATGACAGAACTACATCAATCTGGTGAAATTCCCAATCCTAAATCAGATGAAAAGGACGAACTAGAAAATTATTTGGCTAAAGTGTAAGCATGAACTGATTTGCCTTGCAAGTTCCTTAAAACTTAAAGAGCTAGATGTGACAACAAAAGGATAGCAAAAGTCCAGCATATTCTATTTACATTCAAGATACAAAAAGACCAAATTGATAAAGAAACATTATCAACTCTGACAATGAAATCTGAAAATTTTAGTCCAACACTAATATATTTACATTCAAGACATGGCAAGAACAAATTGATAGAGAAACTTTATCTATTTTGACAATCAAAATTGAAAACTCAAGTCTACCATTATTCTATTAGCCTTCAAGTTGCACCAAGAACCATCCAGGGTATCAGTGGAATGGACAGTAGTCCTCCACCCTTAGTCGGAGGTCCTAAACCCTAAATGCAGATTAGTTGGGATCAGGGCGCTGAACGCATTGATACAGAAAGAACAAATTGATAAAGAAATGACAACAAAGAAATCGAGAATTTAAGTGTAACGATTATATTAACATTCAAGATACACAAAGAACGAATTGATAGAGAGACTTTATTCTGACAATGAAAATAAAAACTTTACATTCATTTCTAGTACAAACCGTATACCACAAGCAGGAAGAATCTCAATTCCTCATTGCCCAAATAAGACAATTTTATTTTCCTAGTTTGTCTTATCCAAATGTACAAAAAGTTGATGCCCCAACATGACAACAAAGACCTTATTCTTTCATCTTTCTAGTATATCAATCTCTTGATCCTGGAGGAAAATATGAGACATGTTACCAAGAAGTGTTTCCAGGGATCTTGATTTCCTGCTCCTCACTCTCCCTGATTCTCTTAACAACTCAGTTAATCTCCTCTTCTCATCATCCACGTCAGGATTTGCTGTCCCCAGTTTCTCCTCTCTCATTCCGACGACGAATTCTAAGATTTCAATTGCATCATCCGTCCTGCAAACAATTACATTGTTATGATGAAAAAAAGAAAAAAAAAAACAGAAACCAAACATAACATGATATAGTAATATGACAATCGAAGACATCAATTACCTGCCCATAGCATCATAAGTTCCAGCAAGATTGCTATAGATTCCTAATGTATCTGCATGATATGGTCCACATTCAGTCTCTAAAATTATCCTTGCTTCTTCAAATAGGTCCCCAGCCTCATTAATTGCATAAAGTTGTACACATGCAAGTCCCATTTGGTTTAAAGTAATACCAAAAATTGCAGACTTCTTCTCTCCAATTTCTCTGAATTTCGATACTGCAGTTTTCAGGGAATCGTACGAGTCCATATAATCCCCCAGAATATAGTACAAGACCCCAATCTGGGCTTCAATTCCTGCAATAGTGCTCTGTTGTCCTGGTGCATTTCCATACACTTTTATGGCCTTCTGAAGCAACTTGAGCGCCTGATCAGGTTCGTTCATCGACTCATAGATCACAGATACATCGACAAGACCACTTGCAATCTCTTCTGGATGGCTTCCAGGGACGGCCTTAGTATAAATCCGAAGTGCATTTTCACA</genome_strand>
        <mrna_strand>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG.......................................................................................................................................................................................GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA........................................................................................................................................................................................................GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG........................................................................................................................................................................................................................................................................GGGGGGGGCCG-GGCCCCCT-TTCCCCCTTT........................................................................................................................................................................................GGGGGGGTTTTTAAAAATTTCGGGGGGGGTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1003" ref_strand="+" ref_description="T1003">
      <seq>gcttcgactgtgataaaaatggaaatattgttactaattatcatgtgattcgaggtgcttctgatctcaaagtgactcttgctgatcaaactacttatgatgcaaacgttgttggatttgaccaagatcaagatgttgctgtgttgcatattgatgcaccaaaagacaagttgcgacctataccaattggcgtctcggcagacttgctcgttggtcaaaaagtatttgctattggaaatccatttggacttgatcatacactcaccactggtgtaatcagtgggcttaggagagaaatcaattctgcggctactggccgaccaatccaagatgttattcagacagatgcagcaatcaatcctggtaacagtggagggccacttatagatagttctggaaatcttattggaataaatactgctatatattctccttccggagcatcatcaggtgttggattttcaattccagttgatactgacagtggcattgatgatcagttagtgcagtttgggaaagtcacaatgccaattctgggcataaagatcgcacctgatcagtccgtagagcaactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="20841" stop="23642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21141" g_stop="21210" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21518" g_stop="21689" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="242" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22414" g_stop="22451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="280" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22864" g_stop="23062" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="479" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23245" g_stop="23342" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="577" r_length="98" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="T1003" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="T1003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21141" e_stop="21210"/>
          <exon e_start="21518" e_stop="21689"/>
          <exon e_start="22414" e_stop="22451"/>
          <exon e_start="22864" e_stop="23062"/>
          <exon e_start="23245" e_stop="23342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAGGTGAGTTAATTGGCAACTGGAAACACATTTTTCTGATTTAAACAAGTTTCTATTTATTAGTATCTGCCTAAATGATTTCAGTTTCAAGTTCCTTGCCACAGTCCTCATATTATTTCTATATGCTATCTGACTGCTCTTATACTAGCATGATTCTACAACTTCGATTGTCTTAGCTAATCGTGGAGTATTAGGAAACCTGCAATTTTTTTCATGATATGAATTTGTTTGGATTGAACAGTCTGTTAGTTGCTTAATTATGGTTTTACGCTCTAATTGCTAGTACTAATATAGTCTTAGTCTTGCTCAGAGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCAGTATGTGACGAAATACAAACCTGCTAGAGAATTCTGTTCATGTAATAATAGTACTTTTATCTGCTCTGTTGTCCCTTCTCTAAACCTAGTTTGAGCCATTCTATATTCAGCTTTCGCTTTAGAGGAAAACTATCGTCTTGCAGGCGTTCATGAGCATTACAACAATTAGAAAGTATTAATTTGCATATAGAATGCTAGTGCATTTTGTTATCAATAAAATTTGTGCAAGTAAGGAAAAAAACCAACTGACAGCGAGTAAGGAAAAAAAACAACTGATAGCAAGTACAACTTAGTTCAGTCTTCTGGTTCAACTGCTTGCTTGTAAGCGCACCTTCTTCTCCAGCTAAAGAATCAGTATCTGAAAGTTGGCTGTTACTTCTGAACATTCATCGCCTGCTAATATTTTTAACTGCTTCTTTTCCCATTAGTTTAAAGCATAACAATTCCCCCCCTGTAGTGCTCCAACTTCTGCCAAAATGTGTCACTGACTTGCACTTAAATCAAATTACTTTTTAAGGGCCCTAAAACAATTGTTGACTTACACATTGAAAATCTCTTGTTGCAATGAGTATATGTTTCTTGTGTTTAGGTACCCCACCACTTCACACCTCTTTTTCCTCTTTATTCATATAAATTTACTATAAAACATGAATATTTTACTTCTCTTTTATGTTTCATATGTTAAACACATGATGAATGATTTATAATGTAAATATCTTTGCAGTTTGGACTTGATCATACACTCACCACTGGTGTAATCAGGTATTTAGACATTTCATTTATGGTGTGCAGGTTCCTAATGTTCAGATATTCCAGTGAAATGGTGTTAACTATGTTTCTGTGAAGATAGGAGATGAAATAAATGAATCTAGCCACTCAAAGTCGTGGTAAAAATGACGTTAACTTCTTCCATTGTTTAAAACGGAGATGAAGTAGAGAATTTTGTTTAATCTTTTCCGTGTATTCAACTGTAAGACTAGCCTTGTGATGTTGACGTGGTTGTCACTGTTGAGTGCCTTGCACCCATAAATTCCAAGAAGCAAACATAAATACTAACCATATGTCATGGTAAATGGATACATATGCATAAGCAAGCTGTGTTGGATATGGATTAACTTAATGCTATGGATCATGCATATTCTTTAACATCACTGATCAATTTATATGTTTCTAGTGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACTGTAAGTTGTTATTTGTCTTTCAGAATTTTATTATTTGCAATGCTGATTGAAACTTTTAGGTTAAACATACTTCCCCATATAAAGCAAACTGATTTATTACACCCTGTGGTTCAGAAAGTTGCCCTTGCTTCTACTACGATGTGGTAGTCTCTCCCTGATGATTTTGATTTTTACCTATTCAGGTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGG</genome_strand>
        <mrna_strand>GCTTCGACTGTGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAA...................................................................................................................................................................................................................................................................................................................AGTGACTCTTGCTGATCAAACTACTTATGATGCAAACGTTGTTGGATTTGACCAAGATCAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTCTCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGACCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTATAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGAGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT......................................................................................................................................................................................GACAGTGGCATTGATGATCAGTTAGTGCAGTTTGGGAAAGTCACAATGCCAATTCTGGGCATAAAGATCGCACCTGATCAGTCCGTAGAGCAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG48-F" ref_strand="+" ref_description="TG48-F">
      <seq>taaacatttttatggggtatatgattcctctccatccccttttctgttcattttacttgagagctagatagctacaacagtcttcaccaggctagtacaaaatcatcaccaccatcaaacgattttttcctctcaatcaaagggcttaatatcatacttaataagccagatttcactacccccaaaagagaagaagtcagaagttctaaaagtttaaaacaattatggaacctaaccatgaaatatgcatgtataaagataataaatcttatatttattattttgctataaacaacatgtattagtgtaattggatgaaccaacttgcctgatctagggcaaaatcaaacatgtagcgcaaatgatgttgcacgatgttcttgccggtggcagattggtaggctaaatcgaatgcctgagctgctgaatacacaaatccaatgacattcactgacatacagtacctgcaacgttattcacctaccaatattatcattcataactatacctgcctaacacatttattcattgctctgaaagagtgaaacttaatgcgctgcagaattaattcagtcaatgtaaagagaacaagtgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="45160" stop="46357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45460" g_stop="46057" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="TG48-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="TG48-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45460" e_stop="46057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACATTTTTATGGGGTATATGATTCCTCTCCATCCCCTTTTCTGTTCATTTTACTTGAGAGCTAGATAGCTACAACAGTCTTCACCAGGCTAGTACAAAATCATCACCACCATCAAACGATTTTTTCCTCTCAATCAAAGGGCTTAATATCATACTTAATAAGCCAGATTTCACTACCCCCAAAAGAGAAGAAGTCAGAAGTTCTAAAAGTTTAAAACAATTATGGAACCTAACCATGAAATATGCATGTATAAAGATAATAAATCTTATATTTATTATTTTGCTATAAACAACATGTATTAGTGTAATTGGATGAACCAACTTGCCTGATCTAGGGCAAAATCAAACATGTAGCGCAAATGATGTTGCACGATGTTCTTGCCGGTGGCAGATTGGTAGGCTAAATCGAATGCCTGAGCTGCTGAATACACAAATCCAATGACATTCACTGACATACAGTACCTGCAACGTTATTCACCTACCAATATTATCATTCATAACTATACCTGCCTAACACATTTATTCATTGCTCTGAAAGAGTGAAACTTAATGCGCTGCAGAATTAATTCAGTCAATGTAAAGAGAACAAGTGACAA</genome_strand>
        <mrna_strand>TAAACATTTTTATGGGGTATATGATTCCTCTCCATCCCCTTTTCTGTTCATTTTACTTGAGAGCTAGATAGCTACAACAGTCTTCACCAGGCTAGTACAAAATCATCACCACCATCAAACGATTTTTTCCTCTCAATCAAAGGGCTTAATATCATACTTAATAAGCCAGATTTCACTACCCCCAAAAGAGAAGAAGTCAGAAGTTCTAAAAGTTTAAAACAATTATGGAACCTAACCATGAAATATGCATGTATAAAGATAATAAATCTTATATTTATTATTTTGCTATAAACAACATGTATTAGTGTAATTGGATGAACCAACTTGCCTGATCTAGGGCAAAATCAAACATGTAGCGCAAATGATGTTGCACGATGTTCTTGCCGGTGGCAGATTGGTAGGCTAAATCGAATGCCTGAGCTGCTGAATACACAAATCCAATGACATTCACTGACATACAGTACCTGCAACGTTATTCACCTACCAATATTATCATTCATAACTATACCTGCCTAACACATTTATTCATTGCTCTGAAAGAGTGAAACTTAATGCGCTGCAGAATTAATTCAGTCAATGTAAAGAGAACAAGTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG48-R" ref_strand="+" ref_description="TG48-R">
      <seq>ttatatttaataacaatttaatttttaaaatatttatttacttaaaaccacaaaaacgttataatttatttaaatttttagatcacagttttcattttttttggaatactgtactcgtatttagtagtagtcctaaatatagagctttcacaaattcagacgtggaagacgaaagtggaaaccgccaaaactatcattatcgcagagacctcatctttcaacttccattcattattctattttccgtttcactccattttcatacacccaatcccatttttgtagcagcagtgttctgtttcttcttcatggaattgaatcataccaagcagactctgcaaacggctatggagaatgaacagcagcatctctccctctctgaatcagattctactgattctgaacctgagaaagctattactttctcctccccagctcgttttcatagcggctccgattctgatcattccactaagttccaaacagataaagctactaatccctctaccgtcaatggcgattctactaaggcgcaatctcagccgaggtcatcaatttcctccgattcagatgattttagtaagtgtggagaacataaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="47458" stop="46258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47158" g_stop="46558" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="TG48-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="TG48-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47158" e_stop="46558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTTAATAACAATTTAATTTTTAAAATATTTATTTACTTAAAACCACAAAAACGTTATAATTTATTTAAATTTTTAGATCACAGTTTTCATTTTTTTTGGAATACTGTACTCGTATTTAGTAGTAGTCCTAAATATAGAGCTTTCACAAATTCAGACGTGGAAGACGAAAGTGGAAACCGCCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGT</genome_strand>
        <mrna_strand>TTATATTTAATAACAATTTAATTTTTAAAATATTTATTTACTTAAAACCACAAAAACGTTATAATTTATTTAAATTTTTAGATCACAGTTTTCATTTTTTTTGGAATACTGTACTCGTATTTAGTAGTAGTCCTAAATATAGAGCTTTCACAAATTCAGACGTGGAAGACGAAAGTGGAAACCGCCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cTOF-22-I4" ref_strand="+" ref_description="cTOF-22-I4">
      <seq>gggtcgaaggtggatttcaaggcaggacaaataaattagtcgatggctgctattccttttggcagggcgcggtagtgtttcttatacaaagactaaatttgatagtccatgaacaactagggctgtcaaatgacctcagtacagaaagtgctgatgattcttcagagtcagagttatctgatgaagaagagcatttggaagggatatcctctcatgttcaggatactttccctcttggacaagcaggtgcttgtcaagaaaatgcttctcatagcccaaaaatagcagatactggatatgagtttatcaaccgacccatagctatgaggcctctctttgacagcatgtatctgcagcaatatgttcttctttgctctcagattgaagttggtggtttcagagacaaacctgggaagggtagagactactaccatacctgttactgtttaagtggtctttcaattgctcagtatagctggaccgacgaagctgattctccaccattacccagggatgtatttggtccttattccaaatgtctgttggaacaggttcacccactcttcaacgtagtgttggatcggtattatgaagctcgcgaatacttctcaggcttgtgagactgtttcaccactttcattagcaccaactttttcagaaacttagttgcaatccagaagttaaaagtgtcattgggttcaaaagagttgtgatcggttatgtacaatatccttgcatttgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="50205" stop="47468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49905" g_stop="49841" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49840" i_stop="49755" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49754" g_stop="49574" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="246" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49014" g_stop="48881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="380" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48132" g_stop="47768" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="745" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="cTOF-22-I4" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="cTOF-22-I4" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49905" e_stop="49841"/>
          <exon e_start="49754" e_stop="49574"/>
          <exon e_start="49014" e_stop="48881"/>
          <exon e_start="48132" e_stop="47768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAGGTGACTACCAGTTTTACCTTTATGTCCTGAACTCTTCCATTTCCAGTTTAATTATTACTGAGCTAAAGATGACTTTGATTGATCAGGGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAGGTATGTCAATTTGAGGAACAATAGTTCAAAAGGCCAAAAAGAAAGTACCACTGTGTGATTCACTGGTCTGTTTGTTGCAGTGCTATTCAACTTTGTCCTTGGATCTGAATTAAATAGAGCATATCATGTTATAACGGAATCCAGTGGGTGGAATTTAATAAATGAAGGATGAAAAGAATATATTCCATCTTAAACCACTTCTCTTGTCACAGAAGTGGCACTTGGATTGTATATGAACTTGATATCTCCAGATGGTCAGGTAGTTAGTAACCTATAGTGCTATCAGCTGAACTTCACCTTAACTAGTTACCATATGTTGGATTCTTCAAACAATGTATGTGTAAAAGTTGGATTATCAAAATGGGTTGTATGTCCCTTACTCTGATCCATTTGTCCATTTGACGGTGTACCGAGATTGTTTAGTAGAGCATTTCATTGGAAGTTTGAAACTCTGACAGCTCCTAATATTTCTATCCAGATTCTTTGTGTTGTCTAGATCTTTCTTTCTTTTAGGTCTTATCACAATTACTTTCTAATCACATCATTTCATTTTTCTTAGGTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAGGTGCTTAAATTTTCGAGAAAATATATTCTGAAGATCCCTGTTCACTCTTGCATGTCCCTTGCTTTGGTGTAGGATTGTAATGCATATGCACAGCAGCACAAGCTGGAAAATAAGGGATGAAGAAAAAATCTCAAGAAAATTATAATCGTATAAGAAGCTAAGATTTTGTTTATAAAATTTGTAACATCACTGAAAATGCATATGAGAAACTGGTTTATTTGAGCTTCTAGGCCCTACATAGTTTAAAGAAATAAGTAAATTATATCGGGTTTCTCTCCTAATCTCGTCTGAAGATGGAATTGTTGTCTGATTTTGGAGCATCACTAAAACCACACCGTTCTTGTTAGAACATCTTGAATATCATTCATCTGCTGGGCATCATTATTTCTCCATTAACATATAAATTCAAGAGCCTTTAAAAGGCATGTGTATTTGATATAATGTTCTTTTTTGAATTTGTTGGCAACATGAAGTCGTGTACTAATCATCCTCTTAATTGGTGTTGGATTCAACAGCTTTATTTTGCATTCTTTTCATAATCAGAGTTCAATTTTCTTGTGTATAATTGGTAACTATTTATTCATTCTTCCAAGGGAAAAAGAAAGTTAAGTGGGTTTTAAATATTCTATATCAGATGCTGCGACTCACCAAGATATTAGTGTTTAGTTTCTTTTGGCAGTTTGTTATTCCTGTTTCTATTGCTTTTATATCTTTTTCAAGATTCTAATATATCATGTTGTGGATGTAGATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATA</genome_strand>
        <mrna_strand>GGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAG......................................................................................GGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGGTTATGTACAATATCCTTGCATTTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g55250" ref_strand="+" ref_description="C2_At3g55250">
      <seq>caatatcaaaacaaagattgaacgtccaccacatgaaacactatggtggttgtctcctctctccactctccttcttcttcctcctccatctactgcaactcaatctctccctctcttcgttattttcgacgtttctatacatttccatccacaaggaataataataaagcagcttccaactccaatggcggtgccgtcttgctcgtcaaggcttatatggatgagaccacaaatccaatttccagtttcgctaataaggtcatcggttcactccctgtttttggtctcatagccagaattgtcaatgaggaaggtggtgttggtggtgattttattgattttgctgagttcaggaggcgagtcggtaacaagtgctccattaatgattcaagagctttttatgaatttcgagatcgacgtggcaagacaggggatcctctgtatgtgctactgtgctgttggttagctgctgtaggagctggtttactcaaatctgaggaaattttggaaggggtagcaaggcttagtttagcaaatgatattgaatttgaagagcaaaacttcattgcaatgatgaatgaagcaagagagaagcgatcaaagttgggagctcctgcacctacaatccccatggaatttcgtgctgagaaagctctggaagctatacatttgtgttgctatggaagggatctgatagaagaagaagatgaaaaactgctaagtaccatgcttaatgctgtctttcctacagttgggcagcaaaaggtagaaattattgtcaaagagaaggcaaagagagtggcagatggaactgaagatatcaaatatacagagcccaagcaattatcaaaagaagcagttcagctgcaaatgaaagaccttgaatttcttaagcaaaacagtttgaatcagtgaggcatgaaacttgttatcattctcaaagtaaatttaggtactggtgactaacaccaacaggaagactatcccacaaacattcggtataggaaatcacaggcacatgtcatgaatgacaaatcttcttcgcacaatgctgccaactaattaaacagtgcatgtgtatgctccctgctctctttcttttgtgatcagtctgcaatttctacttgcaattgaaagatatagtggctctgatttgtattcaaaaaaaaaattttgttttttaaaaactcgagggggggcccgtacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="73815" stop="70154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73516" g_stop="73423" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72078" g_stop="71759" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="426" r_length="332" r_score="0.887"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71681" g_stop="71517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="591" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71043" g_stop="70469" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="1165" r_length="574" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="C2_At3g55250" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>1154</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g55250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73516" e_stop="73423"/>
          <exon e_start="72078" e_stop="71759"/>
          <exon e_start="71681" e_stop="71517"/>
          <exon e_start="71043" e_stop="70469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACTGTAACTCAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCCTGTATGTGCCCGGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCCAGTCCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGGACAACGGCTGACTAAGCTTACTCCCCCATTCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCAT-C-C-A-GAA-GA-AAT-AA-----TTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAGGTAATTTTTACTTGCAATCAAGTGACTTGGTTTTATCTATAGATTATTGACCTTGATTTTCCTTGCCTTATTGATAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGGTTCGTAAGATTTCATTTGCCAACGATTTTTAGCTTCTTTTCATTTATGTTACCTTACTTTCAATGCTTATCAGTAAATTTATAGCATACTTACTCGGATACTGTCTTTGAGGCATACTTCAACTTCTGTTTATGCTTCATTCTTTTGATGTGGTACTTAGAACTCTGCCTCCATGTTGTTCGAATCCTCCAAAACTGCATATATTTTAGAGTATCGACACATGCAGACAGTATTCTTGGACGATTCAAGCAGCATAGCTCTGCCTAACTCTTATTGGGAAGCTTGCTTACAATAGTATATCGAGTAAATTTATGTTTGCAGCTATCCCATTACGGGCTTCATTAGATTTAGCACCAAGCACAGAATGTGCACGGTTTGATAGCCATATATCACACTTATATTTGAACTCTCGTTTATGGTCCAGTGTTATACCCAGTACCATTTTTGCTAACATTTTCCTTTACTCGTGCAGAAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATAT---GAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAA</genome_strand>
        <mrna_strand>CAATATCAAAACAAAGATTGAACGTCCACCACATGAAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCAATCTCTCCCTCTCTTCGTTATTTTCGACGTTTCTATACATTTCCATCCACAAGGAATAATAATAAAGCAGCTTCCAACTCCAATGGCGGTGCCGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCCAGTTTCGCTAATAAGGTCATCGGTTCACTCCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGTGGTGATTTTATTGATTTTGCTGAGTTCAGGAGGCGAGTCGGTAACAAGTGCTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG.............................................................................ACAGGGGATCCTCTGTATGTGCTACTGTGCTGTTGGTTAGCTGCTGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAGCAAAACTTCATTGCAATGATGAATGAAGCAAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGATCAAAGTTGGGAGCTCCTGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTGGAAGCTATACATTTGTGTTGCTATGGAAGGGATCTGATAGAAGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTTGGGCAGCAAAAGGTAGAAATTATTGTCAAAGAGAAGGCAAAGAGAGTGGCAGATGGAACTGAAGATATCAAATATACAGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGCTGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAACTTGTTATCATTCTCAAAGTAAA-TTTAGGTACTGGTGACTAACACCAACAGGAAGACTATCCCACAAACATTCGGTATAGGAAATCACAGGCACATGTCATGAATGACAAATCTTCTTCGCACAATGCTGCCAACTAATT---AAACAGTGCATGTGTATGCTCCCTGCTCTCTTTCTTTTGTGATCAGTCTGCAATTTCTACTTGCAATTGAAAGATATAGTGGCTCTGATTTGTATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1525" ref_strand="+" ref_description="T1525">
      <seq>tgctaaatctgatgaagcccgcaatgggatagctgcaaacataaatttactcgatatattgtaagcaagcttcccaataagagttaggcagagctatgctgcttgaatcgtccaagaatactgtctgcatgtgtcgatactctaaaatatatgcagttttggaggattcgaacaacatggaggcagagttctaagtaccacatcaaaagaatgaagcataaacagaagttgaagtatgcctcaaagacagtatccgagtaagtatgctataaatttactgataagcattgaaagtaaggtaacataaatgaaaagaagctaaaaatctgtggcaaatgaaatcttactaacctcccttgcttcattcatcattgcgatgaagttctgttcttcaaattcaatatcatttgctaaactaagccttgctaccccttccaaaatttcctcagatttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="+" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="70863" stop="71922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71163" g_stop="71622" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="+" ref_id="T1525" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="+"/>
        <rDNA rDNA_id="T1525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71163" e_stop="71622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAAATCTAATGAAGCCCGTAATGGGATAGCTGCAAACATAAATTTACTCGATATACTATTGTAAGCAAGCTTCCCAATAAGAGTTAGGCAGAGCTATGCTGCTTGAATCGTCCAAGAATACTGTCTGCATGTGTCGATACTCTAAAATATATGCAGTTTTGGAGGATTCGAACAACATGGAGGCAGAGTTCTAAGTACCACATCAAAAGAATGAAGCATAAACAGAAGTTGAAGTATGCCTCAAAGACAGTATCCGAGTAAGTATGCTATAAATTTACTGATAAGCATTGAAAGTAAGGTAACATAAATGAAAAGAAGCTAAAAATCGTTGGCAAATGAAATCTTACGAACCTCCCTTGCTTCATTCATCATTGCGATGAAGTTTTGTTCTTCAAATTCAATATCATTTGCTAAACTAAGCCTTGCTACCCCTTCCAAAATTTCCTCAGATTTGAGT</genome_strand>
        <mrna_strand>TGCTAAATCTGATGAAGCCCGCAATGGGATAGCTGCAAACATAAATTTACTCG--ATA-TATTGTAAGCAAGCTTCCCAATAAGAGTTAGGCAGAGCTATGCTGCTTGAATCGTCCAAGAATACTGTCTGCATGTGTCGATACTCTAAAATATATGCAGTTTTGGAGGATTCGAACAACATGGAGGCAGAGTTCTAAGTACCACATCAAAAGAATGAAGCATAAACAGAAGTTGAAGTATGCCTCAAAGACAGTATCCGAGTAAGTATGCTATAAATTTACTGATAAGCATTGAAAGTAAGGTAACATAAATGAAAAGAAGCTAAAAATCTGTGGCAAATGAAATCTTACTAACCTCCCTTGCTTCATTCATCATTGCGATGAAGTTCTGTTCTTCAAATTCAATATCATTTGCTAAACTAAGCCTTGCTACCCCTTCCAAAATTTCCTCAGATTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g01480" ref_strand="+" ref_description="C2_At3g01480">
      <seq>gttgacctgagtctctggtattccaattttatccttatctctttccactctcctcctgtccattacacctaattttcaatctcaatttctccattaataccacttacattttgtcaaagatatttttttctccaaacctaaatgtcctctacatttgcttaactgtgtaaacaaattagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttctaacaaatccatcaagcctaagctcaattacagccattttgcacctactcttagtaaaggatcgatccgccattttgttccactatgttcttcacaacgttcgcctccttctgaatctgaatgccaaggcaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagttgcattgtcagttagtttgataactggactacctggatcgcaatggttgagtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccaattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcaataagagaagtccaaaagccccttgaagatattactgatagtctcaagattgctggtgtcaaggcacttgactctgttgaaagaaatacaagacaagcatctcgtgttctcaaggaagggaaaaccttgattgtttcaggagtagctaaatcaaagactgaccacgctattgaattgctaaacaaactagaagctgggttaggtgagcttcaacaaattgttgaagacaggaatcgagatgctgttgcacctaaacagaaggaattgcttaactatgttggaggctgagatcttcctggggcattcgatttctgcagtgttgaagaagatatgggtggatggattcccatatgaagtacctgaagaatatcaaaatatgcctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="86110" stop="83497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85810" g_stop="85435" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="670" r_length="291" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="870" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83898" g_stop="83797" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="973" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="C2_At3g01480" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>969</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g01480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85810" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84519"/>
          <exon e_start="83898" e_stop="83797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCT-ATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTC--A-ATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGGGTAAGTGTAGCTAGCTTAGTCTACTTCTAAAAACAGTATTGCTAGCTTAGTTTTCCATGTTCTTTGATGCACATTTTCATAAACCCTGCGAGTTGTAAAGAGTAATGAGTTGTCGGGCTTTGATTTTCTGCTTGATGATGCATCAATATGATGCTTTGTTACTGCTTCATGGACTTAATTTTATCTTCACATGAGACTGAAAAAGAGACCAATCATGCACATACTTAGCCGAAGTATCTGTTCTTCTGTCCTGAATATGTATTGGGTAGCTTGGTTTAGGCAAAGTCAATATCCATATAAAGTGTTGTATTTTCTGTGCTTTGTTACTGGAAATGTTCTAAAAGAAGGTGTCAAAACCTTAGTACAAAATAACTTTTTCTTCTGAAACTTTCACAAAGCAATTGCTTTGGTAGAATTTATGCCACAGAAGCACAGAAGTGTCATTGGACGGATGCATGTTTAAGTAGGCTACTTATTCCAGTTTGAATACCAAAATAAGATTTTTTGTTGACTATGGACCAATTCTATGAATAGAAAGTGAAGAGTGATGAAAACTTTTAAAAATGGTGAATTTCCAAAGTTATGCCTTTCTCATTTAGACCCCTTGTCATTGACTGCAGCTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATAT-GGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACT</genome_strand>
        <mrna_strand>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCCACTCTCCTCCTGTCCATTACACCTAATTTTCAATCTCAATTTCTCCATTAATACCACTTACATTTTGTCAAAGATATTTTTTTCTCCAAA-CCTAAATGTCCTCTACATTTGCTTAACTGTGTAAACAAATTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCTAACAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTTGCACCTACTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGTTCGCCTCCTTCTGAATCTGAATGCCAAGGCAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATAACTGGACTACCTGGATCGCAATGGTTGAGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCAATAAGAGAAGTCCAAAAGCCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCACTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGTGTTCTCAAGGAAGGGAAAACCTTGATTGTTTCAGGAGTAGCTAAATCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGAATCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAAGATATGGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1475" ref_strand="+" ref_description="T1475">
      <seq>ccaaatgtcctctagaattgcttgactgtgtaaacaaactagttgtaaattcatcaatggcagcatctgtttcctgccactatttttcttccccattaacaacttccaccaaatccatcaagcctaagctcaattacagccatttcgcacctgctcttagtaaaggatcgatccgccattttgttccactatgttcttcacaaagctcgcttccttctgaatctgaatgccaagacaaagagaaagattggtttttgtcattgaagaaatgtgcagctgcagttgcattgtcagttagtttgattagtggactacctggatcgcaatggttgggtcctgctcatgcgagcaccccagcattgccagatgtctctgtattgatctcagggccaccgattaaggatccaggggcgttattgaggtatgcattgcctatagacaacaaggcgataagagaagtccaaaaaccccttgaagatattactgatagtctcaagattgctggtgtcaaggcgcttgactctgttgaaagaaatacaagacaagcatctcgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0236E02-u8qcS/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0236E02.1" temp_strand="-" temp_description="C02HBa0236E02.1  AC215430.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0236E02 sequenced_by:kribb upload_account_name:korea">
        <position start="85976" stop="84394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85676" g_stop="85435" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85118" g_stop="84828" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="533" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84718" g_stop="84694" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="558" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0236E02.1" gen_strand="-" ref_id="T1475" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0236E02.1" gen_strand="-"/>
        <rDNA rDNA_id="T1475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85676" e_stop="85435"/>
          <exon e_start="85118" e_stop="84828"/>
          <exon e_start="84718" e_stop="84694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAGGCAAGTTCTATTATTCTCCTTCACTTTTTTTTTTATAAAAAAAATAGACGTTCATTAGTTCGAAATGAGTTAATGGAAATTCAAATATCTAAATGAGAAGTTTGAGTGTACAATTGCATCTATTACTTCGTACTTTAGTATAAAAAAATCGACTATATGCATATGTAGTTTAAGCCGAATCCACTGCCTCAGTTATACAATGTTAGCATTTGTAAGTAATGACAAGACTGCAGTTGGTAGTTCTTTCTAAAGTTCTCAAGTGTGTGTTCTTAATAAGTAGGAACTTATATGATGAAGATTTTTCCCAAACCTGCAGAAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGAGTAAGATGTCATTTGCTTAGTTGTTCCCACTTTGATAATTTATTGGCTTGAATCTACTTATTAATGTAGTTCTAGATTCGTAATGGTGGTTCGTATTTTAACTGTGTAGAATACAAGACAAGCATCTCGAGCTC</genome_strand>
        <mrna_strand>CCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAAAGCTCGCTTCCTTCTGAATCTGAATGCCAAGACAAAGAG............................................................................................................................................................................................................................................................................................................................AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTTGCATTGTCAGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCGATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA.............................................................................................................AATACAAGACAAGCATCTCGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="17396" PGL_stop="17937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17396" e_stop="17530"/>
            <exon e_start="17608" e_stop="17713"/>
            <exon e_start="17794" e_stop="17937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17396" e_stop="17530" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="17531" i_stop="17607" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17608" e_stop="17713" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17714" i_stop="17793" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="17794" e_stop="17937" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17396" stop="17530"/>
              <exon start="17608" stop="17713"/>
              <exon start="17794" stop="17937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGGCCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAAC : TGCCTTTATTGAGGATTGGGTAAAAATTTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAG : GAAGCTGTGAACGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTTCGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTT</gDNA_template>
            <first_frame> V  L  W  S  R  S  S  H  *  I  R  R  S  S  S  *  G  G  E  H  R  C  H  W  P  Q  C  L  W  R  Y  Q  R  S  H  V  T  T  *  R  W  *  *  I  N  :  C  L  Y  *  G  L  G  K  N  L  F  T  C  Q  G  K  G  S  G  R  S  R  R  E  R  I  C  T  S  M  H  S  L  *  E   : G  S  C  E  R  F  T  W  K  S  A  Y  V  S  I  R  E  R  R  I  G  E  E  N  I  G  I  E  G  R  L  L  *  F  R  E  G  W  I  *  A  V  G  T  *  V  R  S  </first_frame>
            <second_frame>  Y  S  G  V  G  A  A  I  E  Y  A  V  L  H  L  K  V  E  N  I  V  V  I  G  H  S  A  C  G  G  I  K  G  L  M  S  L  P  E  D  G  S  E  S  T :   A  F  I  E  D  W  V  K  I  C  L  P  A  K  A  K  V  L  A  D  H  G  G  K  E  F  A  H  Q  C  T  A  C  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  G  L  V  K  K  T  L  A  L  K  G  G  Y  Y  D  F  V  K  G  G  F  E  L  W  G  L  E  F  G  L </second_frame>
            <third_frame>   T  L  E  *  E  Q  P  L  N  T  P  F  F  I  L  R  W  R  T  S  L  S  L  A  T  V  L  V  E  V  S  K  V  S  C  H  Y  L  K  M  V  V  N  Q   : L  P  L  L  R  I  G  *  K  F  V  Y  L  P  R  Q  R  F  W  P  I  T  E  G  K  N  L  H  I  N  A  Q  L  V  R  R :   K  L  *  T  F  H  L  E  I  C  L  R  I  H  S  *  E  K  D  W  *  R  K  H  W  H  *  R  E  V  T  M  I  S  *  R  V  D  L  S  C  G  D  L  S  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17397" stop="17530"/>
                    <exon start="17608" stop="17713"/>
                    <exon start="17794" stop="17937"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPEDGSESTAFIEDWVKICLPAKAKVLADHGGKEFAHQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGYYDFVKGGFELWGLEFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20477" PGL_stop="26064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20477" e_stop="20904"/>
            <exon e_start="21088" e_stop="21210"/>
            <exon e_start="21518" e_stop="21689"/>
            <exon e_start="22414" e_stop="22451"/>
            <exon e_start="22864" e_stop="23062"/>
            <exon e_start="23245" e_stop="23397"/>
            <exon e_start="23598" e_stop="23732"/>
            <exon e_start="24189" e_stop="24421"/>
            <exon e_start="24984" e_stop="25014"/>
            <exon e_start="25510" e_stop="25548"/>
            <exon e_start="25813" e_stop="25843"/>
            <exon e_start="26028" e_stop="26064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.645"/>
          <exon-intron don_prob="0.000" acc_prob="0.419" e_score="0.769"/>
          <exon-intron don_prob="0.000" acc_prob="0.204" e_score="0.484"/>
          <exon-only e_score="0.541"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20477" e_stop="20904" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20905" i_stop="21087" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21088" e_stop="21210" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21211" i_stop="21517" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21689" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21690" i_stop="22413" i_length="724"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22414" e_stop="22451" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.886">
            <gDNA_intron_boundary i_start="22452" i_stop="22863" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22864" e_stop="23062" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23063" i_stop="23244" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23245" e_stop="23397" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="23398" i_stop="23597" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23598" e_stop="23732" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23733" i_stop="24188" i_length="456"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24189" e_stop="24421" e_length="233"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24422" i_stop="24983" i_length="562"/>
          </intron>
          <exon e_serial="9" e_score="0.645">
            <gDNA_exon_boundary e_start="24984" e_stop="25014" e_length="31"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25015" i_stop="25509" i_length="495"/>
          </intron>
          <exon e_serial="10" e_score="0.769">
            <gDNA_exon_boundary e_start="25510" e_stop="25548" e_length="39"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.419">
            <gDNA_intron_boundary i_start="25549" i_stop="25812" i_length="264"/>
          </intron>
          <exon e_serial="11" e_score="0.484">
            <gDNA_exon_boundary e_start="25813" e_stop="25843" e_length="31"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.204">
            <gDNA_intron_boundary i_start="25844" i_stop="26027" i_length="184"/>
          </intron>
          <exon e_serial="12" e_score="0.541">
            <gDNA_exon_boundary e_start="26028" e_stop="26064" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20477" stop="20904"/>
              <exon start="21088" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23397"/>
              <exon start="23598" stop="23732"/>
              <exon start="24189" stop="24421"/>
              <exon start="24984" stop="25014"/>
              <exon start="25510" stop="25548"/>
              <exon start="25813" stop="25843"/>
              <exon start="26028" stop="26064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="21210"/>
              <exon start="21518" stop="21689"/>
              <exon start="22414" stop="22451"/>
              <exon start="22864" stop="23062"/>
              <exon start="23245" stop="23342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTTTGCTCTCACCAGTTGTCTTCTTAACAATGGCTGCATCTTCACACTCCCTAGCTTCTTCTGCTTGCTTCTCCACAACTCCGGCACGGAAATTTTCCGGCTCAGATCGATTTCAACTTGCTAAGTCTTTACTCTGCCGGAAAATACCTGGTTTCTCCGGCAGTGTGGTCTGCGCTCGGCGTATTTGCTCTAACTATGCCTCTTCCGGTGACCAGTCCAACTACGGGAAGAAGCTTATGGATAGTATTTTTGTGGCATGCACTTCCGTTGCCTTGTCTTTCTCTCTCTATATAGCAGACGTTGACCCTGCCTCGGCTTTTGTAGTCACTTCACCCAGGAAATTGCAGACTGATGAACTTGCTACTGTTCGTCTCTTCCAAGAGAATACACCTTCCGTTGTGTATATTACTAATCTTGCTTCCAG : GCAGGATATGTTCACACTGGATGTATTTGAGGTGCCTCAAGGGTCTGGGTCAGGCTTCGTCTGGGATAAAAATGGAAATATTGTTACTAATTATCATGTGATTCGAGGTGCTTCTGATCTCAG : AGTGACTCTTGCTGATCAAACTACTTATGATGCAAAAGTTGTTGGATTTGACCAAGATAAAGATGTTGCTGTGTTGCATATTGATGCACCAAAAGACAAGTTGCGACCTATACCAATTGGCGTATCGGCAGACTTGCTCGTTGGTCAAAAAGTATTTGCTATTGGAAATCCA : TTTGGACTTGATCATACACTCACCACTGGTGTAATCAG : TGGGCTTAGGAGAGAAATCAATTCTGCGGCTACTGGCCGCCCAATCCAAGATGTTATTCAGACAGATGCAGCAATCAATCCTGGTAACAGTGGAGGGCCACTTCTAGATAGTTCTGGAAATCTTATTGGAATAAATACTGCTATATATTCTCCTTCCGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGATACT : GTCAGTGGCATTGTTGATCAGTTAGTGCAGTTTGGGAAAGTCACAAGGCCAATTTTGGGCATAAAGTTTGCACCTGATCAGTCCGTTGAGCAACTGGGAGTCACTGGAGTACTTGTCCTGGATGCTCCTCCAAATGGTCCTGCAGGCAAAGCA : GGTCTTCTACCTACTAAACGTGATTCCTACGGAAGACTTATTTTAGGTGATATAATCACATCTATAAATGGAAAGAAGGTCTCTAATGGCACCGACTTGTACAGAATTCTTGACCAATGCAAAGTTGGAGAAAAG : GTAATTGTGGAAGTGCTGCGTGGGGATCAGAAAGAGAAGATCCCTGTACTTCTGGAACCAAAGCCTGAAGAATCGTAGTTCCTCAAATGGATAGAGTATGTGTTGATATGCATTTCTTGGCGAACAAGCCCATATTATTAGTGCATCAATTGTTGAATGGTTGTGTATATACAAAACAACGCTTAAAACTAGGGTGCAAGCAATATAGTTGGGAGTCTAACACTGCTGCCTAA : AACAAATTGATAAAGAAATGACAACAAAGAA : AAAAAAAGAAAAAAAAAAACAGAAACCAAACATAACATG : GGAATCGTACGAGTCCATATAATCCCCCAGA : GGACGGCCTTAGTATAAATCCGAAGTGCATTTTCACA</gDNA_template>
            <first_frame> S  S  L  L  S  P  V  V  F  L  T  M  A  A  S  S  H  S  L  A  S  S  A  C  F  S  T  T  P  A  R  K  F  S  G  S  D  R  F  Q  L  A  K  S  L  L  C  R  K  I  P  G  F  S  G  S  V  V  C  A  R  R  I  C  S  N  Y  A  S  S  G  D  Q  S  N  Y  G  K  K  L  M  D  S  I  F  V  A  C  T  S  V  A  L  S  F  S  L  Y  I  A  D  V  D  P  A  S  A  F  V  V  T  S  P  R  K  L  Q  T  D  E  L  A  T  V  R  L  F  Q  E  N  T  P  S  V  V  Y  I  T  N  L  A  S  R :   Q  D  M  F  T  L  D  V  F  E  V  P  Q  G  S  G  S  G  F  V  W  D  K  N  G  N  I  V  T  N  Y  H  V  I  R  G  A  S  D  L  R :   V  T  L  A  D  Q  T  T  Y  D  A  K  V  V  G  F  D  Q  D  K  D  V  A  V  L  H  I  D  A  P  K  D  K  L  R  P  I  P  I  G  V  S  A  D  L  L  V  G  Q  K  V  F  A  I  G  N  P  :  F  G  L  D  H  T  L  T  T  G  V  I  S :   G  L  R  R  E  I  N  S  A  A  T  G  R  P  I  Q  D  V  I  Q  T  D  A  A  I  N  P  G  N  S  G  G  P  L  L  D  S  S  G  N  L  I  G  I  N  T  A  I  Y  S  P  S  G  A  S  S  G  V  G  F  S  I  P  V  D  T  :  V  S  G  I  V  D  Q  L  V  Q  F  G  K  V  T  R  P  I  L  G  I  K  F  A  P  D  Q  S  V  E  Q  L  G  V  T  G  V  L  V  L  D  A  P  P  N  G  P  A  G  K  A  :  G  L  L  P  T  K  R  D  S  Y  G  R  L  I  L  G  D  I  I  T  S  I  N  G  K  K  V  S  N  G  T  D  L  Y  R  I  L  D  Q  C  K  V  G  E  K  :  V  I  V  E  V  L  R  G  D  Q  K  E  K  I  P  V  L  L  E  P  K  P  E  E  S  *  F  L  K  W  I  E  Y  V  L  I  C  I  S  W  R  T  S  P  Y  Y  *  C  I  N  C  *  M  V  V  Y  I  Q  N  N  A  *  N  *  G  A  S  N  I  V  G  S  L  T  L  L  P  K :   T  N  *  *  R  N  D  N  K  E  :  K  K  R  K  K  K  T  E  T  K  H  N  M  :  G  I  V  R  V  H  I  I  P  Q   : R  T  A  L  V  *  I  R  S  A  F  S   </first_frame>
            <second_frame>  P  L  C  S  H  Q  L  S  S  *  Q  W  L  H  L  H  T  P  *  L  L  L  L  A  S  P  Q  L  R  H  G  N  F  P  A  Q  I  D  F  N  L  L  S  L  Y  S  A  G  K  Y  L  V  S  P  A  V  W  S  A  L  G  V  F  A  L  T  M  P  L  P  V  T  S  P  T  T  G  R  S  L  W  I  V  F  L  W  H  A  L  P  L  P  C  L  S  L  S  I  *  Q  T  L  T  L  P  R  L  L  *  S  L  H  P  G  N  C  R  L  M  N  L  L  L  F  V  S  S  K  R  I  H  L  P  L  C  I  L  L  I  L  L  P   : G  R  I  C  S  H  W  M  Y  L  R  C  L  K  G  L  G  Q  A  S  S  G  I  K  M  E  I  L  L  L  I  I  M  *  F  E  V  L  L  I  S   : E  *  L  L  L  I  K  L  L  M  M  Q  K  L  L  D  L  T  K  I  K  M  L  L  C  C  I  L  M  H  Q  K  T  S  C  D  L  Y  Q  L  A  Y  R  Q  T  C  S  L  V  K  K  Y  L  L  L  E  I  H :   L  D  L  I  I  H  S  P  L  V  *  S   : V  G  L  G  E  K  S  I  L  R  L  L  A  A  Q  S  K  M  L  F  R  Q  M  Q  Q  S  I  L  V  T  V  E  G  H  F  *  I  V  L  E  I  L  L  E  *  I  L  L  Y  I  L  L  P  V  H  H  Q  V  L  D  F  Q  F  Q  L  I  L :   S  V  A  L  L  I  S  *  C  S  L  G  K  S  Q  G  Q  F  W  A  *  S  L  H  L  I  S  P  L  S  N  W  E  S  L  E  Y  L  S  W  M  L  L  Q  M  V  L  Q  A  K  Q :   V  F  Y  L  L  N  V  I  P  T  E  D  L  F  *  V  I  *  S  H  L  *  M  E  R  R  S  L  M  A  P  T  C  T  E  F  L  T  N  A  K  L  E  K  R :   *  L  W  K  C  C  V  G  I  R  K  R  R  S  L  Y  F  W  N  Q  S  L  K  N  R  S  S  S  N  G  *  S  M  C  *  Y  A  F  L  G  E  Q  A  H  I  I  S  A  S  I  V  E  W  L  C  I  Y  K  T  T  L  K  T  R  V  Q  A  I  *  L  G  V  *  H  C  C  L   : K  Q  I  D  K  E  M  T  T  K  K :   K  K  E  K  K  K  Q  K  P  N  I  T  W :   E  S  Y  E  S  I  *  S  P  R  :  G  R  P  *  Y  K  S  E  V  H  F  H  </second_frame>
            <third_frame>   L  F  A  L  T  S  C  L  L  N  N  G  C  I  F  T  L  P  S  F  F  C  L  L  L  H  N  S  G  T  E  I  F  R  L  R  S  I  S  T  C  *  V  F  T  L  P  E  N  T  W  F  L  R  Q  C  G  L  R  S  A  Y  L  L  *  L  C  L  F  R  *  P  V  Q  L  R  E  E  A  Y  G  *  Y  F  C  G  M  H  F  R  C  L  V  F  L  S  L  Y  S  R  R  *  P  C  L  G  F  C  S  H  F  T  Q  E  I  A  D  *  *  T  C  Y  C  S  S  L  P  R  E  Y  T  F  R  C  V  Y  Y  *  S  C  F  Q  :  A  G  Y  V  H  T  G  C  I  *  G  A  S  R  V  W  V  R  L  R  L  G  *  K  W  K  Y  C  Y  *  L  S  C  D  S  R  C  F  *  S  Q  :  S  D  S  C  *  S  N  Y  L  *  C  K  S  C  W  I  *  P  R  *  R  C  C  C  V  A  Y  *  C  T  K  R  Q  V  A  T  Y  T  N  W  R  I  G  R  L  A  R  W  S  K  S  I  C  Y  W  K  S   : I  W  T  *  S  Y  T  H  H  W  C  N  Q  :  W  A  *  E  R  N  Q  F  C  G  Y  W  P  P  N  P  R  C  Y  S  D  R  C  S  N  Q  S  W  *  Q  W  R  A  T  S  R  *  F  W  K  S  Y  W  N  K  Y  C  Y  I  F  S  F  R  C  I  I  R  C  W  I  F  N  S  S  *  Y   : C  Q  W  H  C  *  S  V  S  A  V  W  E  S  H  K  A  N  F  G  H  K  V  C  T  *  S  V  R  *  A  T  G  S  H  W  S  T  C  P  G  C  S  S  K  W  S  C  R  Q  S   : R  S  S  T  Y  *  T  *  F  L  R  K  T  Y  F  R  *  Y  N  H  I  Y  K  W  K  E  G  L  *  W  H  R  L  V  Q  N  S  *  P  M  Q  S  W  R  K   : G  N  C  G  S  A  A  W  G  S  E  R  E  D  P  C  T  S  G  T  K  A  *  R  I  V  V  P  Q  M  D  R  V  C  V  D  M  H  F  L  A  N  K  P  I  L  L  V  H  Q  L  L  N  G  C  V  Y  T  K  Q  R  L  K  L  G  C  K  Q  Y  S  W  E  S  N  T  A  A  *  :  N  K  L  I  K  K  *  Q  Q  R   : K  K  K  K  K  K  N  R  N  Q  T  *  H   : G  N  R  T  S  P  Y  N  P  P  E :   D  G  L  S  I  N  P  K  C  I  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20477" stop="20904"/>
                    <exon start="21088" stop="21210"/>
                    <exon start="21518" stop="21689"/>
                    <exon start="22414" stop="22451"/>
                    <exon start="22864" stop="23062"/>
                    <exon start="23245" stop="23397"/>
                    <exon start="23598" stop="23732"/>
                    <exon start="24189" stop="24266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLLSPVVFLTMAASSHSLASSACFSTTPARKFSGSDRFQLAKSLLCRKIPGFSGSVVCARRICSNYASSGDQSNYGKKLMDSIFVACTSVALSFSLYIADVDPASAFVVTSPRKLQTDELATVRLFQENTPSVVYITNLASRQDMFTLDVFEVPQGSGSGFVWDKNGNIVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLHIDAPKDKLRPIPIGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREINSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVQFGKVTRPILGIKFAPDQSVEQLGVTGVLVLDAPPNGPAGKAGLLPTKRDSYGRLILGDIITSINGKKVSNGTDLYRILDQCKVGEKVIVEVLRGDQKEKIPVLLEPKPEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="45460" PGL_stop="46057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45460" e_stop="46057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45460" e_stop="46057" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45460" stop="46057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG48-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACATTTTTATGGGGTATATGATTCCTCTCCATCCCCTTTTCTGTTCATTTTACTTGAGAGCTAGATAGCTACAACAGTCTTCACCAGGCTAGTACAAAATCATCACCACCATCAAACGATTTTTTCCTCTCAATCAAAGGGCTTAATATCATACTTAATAAGCCAGATTTCACTACCCCCAAAAGAGAAGAAGTCAGAAGTTCTAAAAGTTTAAAACAATTATGGAACCTAACCATGAAATATGCATGTATAAAGATAATAAATCTTATATTTATTATTTTGCTATAAACAACATGTATTAGTGTAATTGGATGAACCAACTTGCCTGATCTAGGGCAAAATCAAACATGTAGCGCAAATGATGTTGCACGATGTTCTTGCCGGTGGCAGATTGGTAGGCTAAATCGAATGCCTGAGCTGCTGAATACACAAATCCAATGACATTCACTGACATACAGTACCTGCAACGTTATTCACCTACCAATATTATCATTCATAACTATACCTGCCTAACACATTTATTCATTGCTCTGAAAGAGTGAAACTTAATGCGCTGCAGAATTAATTCAGTCAATGTAAAGAGAACAAGTGACAA</gDNA_template>
            <first_frame> *  T  F  L  W  G  I  *  F  L  S  I  P  F  S  V  H  F  T  *  E  L  D  S  Y  N  S  L  H  Q  A  S  T  K  S  S  P  P  S  N  D  F  F  L  S  I  K  G  L  N  I  I  L  N  K  P  D  F  T  T  P  K  R  E  E  V  R  S  S  K  S  L  K  Q  L  W  N  L  T  M  K  Y  A  C  I  K  I  I  N  L  I  F  I  I  L  L  *  T  T  C  I  S  V  I  G  *  T  N  L  P  D  L  G  Q  N  Q  T  C  S  A  N  D  V  A  R  C  S  C  R  W  Q  I  G  R  L  N  R  M  P  E  L  L  N  T  Q  I  Q  *  H  S  L  T  Y  S  T  C  N  V  I  H  L  P  I  L  S  F  I  T  I  P  A  *  H  I  Y  S  L  L  *  K  S  E  T  *  C  A  A  E  L  I  Q  S  M  *  R  E  Q  V  T  </first_frame>
            <second_frame>  K  H  F  Y  G  V  Y  D  S  S  P  S  P  F  L  F  I  L  L  E  S  *  I  A  T  T  V  F  T  R  L  V  Q  N  H  H  H  H  Q  T  I  F  S  S  Q  S  K  G  L  I  S  Y  L  I  S  Q  I  S  L  P  P  K  E  K  K  S  E  V  L  K  V  *  N  N  Y  G  T  *  P  *  N  M  H  V  *  R  *  *  I  L  Y  L  L  F  C  Y  K  Q  H  V  L  V  *  L  D  E  P  T  C  L  I  *  G  K  I  K  H  V  A  Q  M  M  L  H  D  V  L  A  G  G  R  L  V  G  *  I  E  C  L  S  C  *  I  H  K  S  N  D  I  H  *  H  T  V  P  A  T  L  F  T  Y  Q  Y  Y  H  S  *  L  Y  L  P  N  T  F  I  H  C  S  E  R  V  K  L  N  A  L  Q  N  *  F  S  Q  C  K  E  N  K  *  Q </second_frame>
            <third_frame>   N  I  F  M  G  Y  M  I  P  L  H  P  L  F  C  S  F  Y  L  R  A  R  *  L  Q  Q  S  S  P  G  *  Y  K  I  I  T  T  I  K  R  F  F  P  L  N  Q  R  A  *  Y  H  T  *  *  A  R  F  H  Y  P  Q  K  R  R  S  Q  K  F  *  K  F  K  T  I  M  E  P  N  H  E  I  C  M  Y  K  D  N  K  S  Y  I  Y  Y  F  A  I  N  N  M  Y  *  C  N  W  M  N  Q  L  A  *  S  R  A  K  S  N  M  *  R  K  *  C  C  T  M  F  L  P  V  A  D  W  *  A  K  S  N  A  *  A  A  E  Y  T  N  P  M  T  F  T  D  I  Q  Y  L  Q  R  Y  S  P  T  N  I  I  I  H  N  Y  T  C  L  T  H  L  F  I  A  L  K  E  *  N  L  M  R  C  R  I  N  S  V  N  V  K  R  T  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45520" stop="45750"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDSYNSLHQASTKSSPPSNDFFLSIKGLNIILNKPDFTTPKREEVRSSKSLKQLWNLTMKYACIKIINLIFIILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="47158" PGL_stop="46558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47158" e_stop="46558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47158" e_stop="46558" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47158" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG48-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATATTTAATAACAATTTAATTTTTAAAATATTTATTTACTTAAAACCACAAAAACGTTATAATTTATTTAAATTTTTAGATCACAGTTTTCATTTTTTTTGGAATACTGTACTCGTATTTAGTAGTAGTCCTAAATATAGAGCTTTCACAAATTCAGACGTGGAAGACGAAAGTGGAAACCGCCAAAACTATCATTATCGCAGAGACCTCATCTTTCAACTTCCATTCATTATTCTATTTTCCGTTTCACTCCATTTTCATACACCCAATCCCATTTTTGTAGCAGCAGTGTTCTGTTTCTTCTTCATGGAATTGAATCATACCAAGCAGACTCTGCAAACGGCTATGGAGAATGAACAGCAGCATCTCTCCCTCTCTGAATCAGATTCTACTGATTCTGAACCTGAGAAAGCTATTACTTTCTCCTCCCCAGCTCGTTTTCATAGCGGCTCCGATTCTGATCATTCCACTAAGTTCCAAACAGATAAAGCTACTAATCCCTCTACCGTCAATGGCGATTCTACTAAGGCGCAATCTCAGCCGAGGTCATCAATTTCCTCCGATTCAGATGATTTTAGTAAGTGTGGAGAACATAAAGT</gDNA_template>
            <first_frame> L  Y  L  I  T  I  *  F  L  K  Y  L  F  T  *  N  H  K  N  V  I  I  Y  L  N  F  *  I  T  V  F  I  F  F  G  I  L  Y  S  Y  L  V  V  V  L  N  I  E  L  S  Q  I  Q  T  W  K  T  K  V  E  T  A  K  T  I  I  I  A  E  T  S  S  F  N  F  H  S  L  F  Y  F  P  F  H  S  I  F  I  H  P  I  P  F  L  *  Q  Q  C  S  V  S  S  S  W  N  *  I  I  P  S  R  L  C  K  R  L  W  R  M  N  S  S  I  S  P  S  L  N  Q  I  L  L  I  L  N  L  R  K  L  L  L  S  P  P  Q  L  V  F  I  A  A  P  I  L  I  I  P  L  S  S  K  Q  I  K  L  L  I  P  L  P  S  M  A  I  L  L  R  R  N  L  S  R  G  H  Q  F  P  P  I  Q  M  I  L  V  S  V  E  N  I  K  </first_frame>
            <second_frame>  Y  I  *  *  Q  F  N  F  *  N  I  Y  L  L  K  T  T  K  T  L  *  F  I  *  I  F  R  S  Q  F  S  F  F  L  E  Y  C  T  R  I  *  *  *  S  *  I  *  S  F  H  K  F  R  R  G  R  R  K  W  K  P  P  K  L  S  L  S  Q  R  P  H  L  S  T  S  I  H  Y  S  I  F  R  F  T  P  F  S  Y  T  Q  S  H  F  C  S  S  S  V  L  F  L  L  H  G  I  E  S  Y  Q  A  D  S  A  N  G  Y  G  E  *  T  A  A  S  L  P  L  *  I  R  F  Y  *  F  *  T  *  E  S  Y  Y  F  L  L  P  S  S  F  S  *  R  L  R  F  *  S  F  H  *  V  P  N  R  *  S  Y  *  S  L  Y  R  Q  W  R  F  Y  *  G  A  I  S  A  E  V  I  N  F  L  R  F  R  *  F  *  *  V  W  R  T  *  S </second_frame>
            <third_frame>   I  F  N  N  N  L  I  F  K  I  F  I  Y  L  K  P  Q  K  R  Y  N  L  F  K  F  L  D  H  S  F  H  F  F  W  N  T  V  L  V  F  S  S  S  P  K  Y  R  A  F  T  N  S  D  V  E  D  E  S  G  N  R  Q  N  Y  H  Y  R  R  D  L  I  F  Q  L  P  F  I  I  L  F  S  V  S  L  H  F  H  T  P  N  P  I  F  V  A  A  V  F  C  F  F  F  M  E  L  N  H  T  K  Q  T  L  Q  T  A  M  E  N  E  Q  Q  H  L  S  L  S  E  S  D  S  T  D  S  E  P  E  K  A  I  T  F  S  S  P  A  R  F  H  S  G  S  D  S  D  H  S  T  K  F  Q  T  D  K  A  T  N  P  S  T  V  N  G  D  S  T  K  A  Q  S  Q  P  R  S  S  I  S  S  D  S  D  D  F  S  K  C  G  E  H  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47156" stop="46560"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFNNNLIFKIFIYLKPQKRYNLFKFLDHSFHFFWNTVLVFSSSPKYRAFTNSDVEDESGNRQNYHYRRDLIFQLPFIILFSVSLHFHTPNPIFVAAVFCFFFMELNHTKQTLQTAMENEQQHLSLSESDSTDSEPEKAITFSSPARFHSGSDSDHSTKFQTDKATNPSTVNGDSTKAQSQPRSSISSDSDDFSKCGEHK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49905" PGL_stop="47768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49905" e_stop="49841"/>
            <exon e_start="49754" e_stop="49574"/>
            <exon e_start="49014" e_stop="48881"/>
            <exon e_start="48132" e_stop="47768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49905" e_stop="49841" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.919">
            <gDNA_intron_boundary i_start="49840" i_stop="49755" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49754" e_stop="49574" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.985">
            <gDNA_intron_boundary i_start="49573" i_stop="49015" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49014" e_stop="48881" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48880" i_stop="48133" i_length="748"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="48132" e_stop="47768" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49905" stop="49841"/>
              <exon start="49754" stop="49574"/>
              <exon start="49014" stop="48881"/>
              <exon start="48132" stop="47768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cTOF-22-I4" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTCGAAGGTGGATTTCAAGGCAGGACAAATAAATTAGTCGATGGCTGCTATTCCTTTTGGCAG : GGCGCGGTAGTGTTTCTTATACAAAGACTAAATTTGATAGTCCATGAACAACTAGGGCTGTCAAATGACCTCAGTACAGAAAGTGCTGATGATTCTTCAGAGTCAGAGTTATCTGATGAAGAAGAGCATTTGGAAGGGATATCCTCTCATGTTCAGGATACTTTCCCTCTTGGACAAGCAG : GTGCTTGTCAAGAAAATGCTTCTCATAGCCCAAAAATAGCAGATACTGGATATGAGTTTATCAACCGACCCATAGCTATGAGGCCTCTCTTTGACAGCATGTATCTGCAGCAATATGTTCTTCTTTGCTCTCAG : ATTGAAGTTGGTGGTTTCAGAGACAAACCTGGGAAGGGTAGAGACTACTACCATACCTGTTACTGTTTAAGTGGTCTTTCAATTGCTCAGTATAGCTGGACCGACGAAGCTGATTCTCCACCATTACCCAGGGATGTATTTGGTCCTTATTCCAAATGTCTGTTGGAACAGGTTCACCCACTCTTCAACGTAGTGTTGGATCGGTATTATGAAGCTCGCGAATACTTCTCAGGCTTGTGAGACTGTTTCACCACTTTCATTAGCACCAACTTTTTCAGAAACTTAGTTGCAATCCAGAAGTTAAAAGTGTCATTGGGTTCAAAAGAGTTGTGATCGTTTATGTACAATATCCTTGCATTTGTATA</gDNA_template>
            <first_frame> G  S  K  V  D  F  K  A  G  Q  I  N  *  S  M  A  A  I  P  F  G  R :   A  R  *  C  F  L  Y  K  D  *  I  *  *  S  M  N  N  *  G  C  Q  M  T  S  V  Q  K  V  L  M  I  L  Q  S  Q  S  Y  L  M  K  K  S  I  W  K  G  Y  P  L  M  F  R  I  L  S  L  L  D  K  Q  :  V  L  V  K  K  M  L  L  I  A  Q  K  *  Q  I  L  D  M  S  L  S  T  D  P  *  L  *  G  L  S  L  T  A  C  I  C  S  N  M  F  F  F  A  L  R :   L  K  L  V  V  S  E  T  N  L  G  R  V  E  T  T  T  I  P  V  T  V  *  V  V  F  Q  L  L  S  I  A  G  P  T  K  L  I  L  H  H  Y  P  G  M  Y  L  V  L  I  P  N  V  C  W  N  R  F  T  H  S  S  T  *  C  W  I  G  I  M  K  L  A  N  T  S  Q  A  C  E  T  V  S  P  L  S  L  A  P  T  F  S  E  T  *  L  Q  S  R  S  *  K  C  H  W  V  Q  K  S  C  D  R  L  C  T  I  S  L  H  L  Y  </first_frame>
            <second_frame>  G  R  R  W  I  S  R  Q  D  K  *  I  S  R  W  L  L  F  L  L  A   : G  R  G  S  V  S  Y  T  K  T  K  F  D  S  P  *  T  T  R  A  V  K  *  P  Q  Y  R  K  C  *  *  F  F  R  V  R  V  I  *  *  R  R  A  F  G  R  D  I  L  S  C  S  G  Y  F  P  S  W  T  S  R :   C  L  S  R  K  C  F  S  *  P  K  N  S  R  Y  W  I  *  V  Y  Q  P  T  H  S  Y  E  A  S  L  *  Q  H  V  S  A  A  I  C  S  S  L  L  S   : D  *  S  W  W  F  Q  R  Q  T  W  E  G  *  R  L  L  P  Y  L  L  L  F  K  W  S  F  N  C  S  V  *  L  D  R  R  S  *  F  S  T  I  T  Q  G  C  I  W  S  L  F  Q  M  S  V  G  T  G  S  P  T  L  Q  R  S  V  G  S  V  L  *  S  S  R  I  L  L  R  L  V  R  L  F  H  H  F  H  *  H  Q  L  F  Q  K  L  S  C  N  P  E  V  K  S  V  I  G  F  K  R  V  V  I  V  Y  V  Q  Y  P  C  I  C  I </second_frame>
            <third_frame>   V  E  G  G  F  Q  G  R  T  N  K  L  V  D  G  C  Y  S  F  W  Q  :  G  A  V  V  F  L  I  Q  R  L  N  L  I  V  H  E  Q  L  G  L  S  N  D  L  S  T  E  S  A  D  D  S  S  E  S  E  L  S  D  E  E  E  H  L  E  G  I  S  S  H  V  Q  D  T  F  P  L  G  Q  A   : G  A  C  Q  E  N  A  S  H  S  P  K  I  A  D  T  G  Y  E  F  I  N  R  P  I  A  M  R  P  L  F  D  S  M  Y  L  Q  Q  Y  V  L  L  C  S  Q  :  I  E  V  G  G  F  R  D  K  P  G  K  G  R  D  Y  Y  H  T  C  Y  C  L  S  G  L  S  I  A  Q  Y  S  W  T  D  E  A  D  S  P  P  L  P  R  D  V  F  G  P  Y  S  K  C  L  L  E  Q  V  H  P  L  F  N  V  V  L  D  R  Y  Y  E  A  R  E  Y  F  S  G  L  *  D  C  F  T  T  F  I  S  T  N  F  F  R  N  L  V  A  I  Q  K  L  K  V  S  L  G  S  K  E  L  *  S  F  M  Y  N  I  L  A  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49903" stop="49841"/>
                    <exon start="49754" stop="49574"/>
                    <exon start="49014" stop="48881"/>
                    <exon start="48132" stop="47893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEGGFQGRTNKLVDGCYSFWQGAVVFLIQRLNLIVHEQLGLSNDLSTESADDSSESELSDEEEHLEGISSHVQDTFPLGQAGACQENASHSPKIADTGYEFINRPIAMRPLFDSMYLQQYVLLCSQIEVGGFRDKPGKGRDYYHTCYCLSGLSIAQYSWTDEADSPPLPRDVFGPYSKCLLEQVHPLFNVVLDRYYEAREYFSGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="73516" PGL_stop="70469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73516" e_stop="73423"/>
            <exon e_start="72078" e_stop="71759"/>
            <exon e_start="71681" e_stop="71517"/>
            <exon e_start="71043" e_stop="70469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="0.887"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="0.970"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="73516" e_stop="73423" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73422" i_stop="72079" i_length="1344"/>
          </intron>
          <exon e_serial="2" e_score="0.887">
            <gDNA_exon_boundary e_start="72078" e_stop="71759" e_length="320"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="71758" i_stop="71682" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="71681" e_stop="71517" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71516" i_stop="71044" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="0.941">
            <gDNA_exon_boundary e_start="71043" e_stop="70469" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73516" stop="73423"/>
              <exon start="72078" stop="71759"/>
              <exon start="71681" stop="71517"/>
              <exon start="71043" stop="70469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g55250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCAAAACAAAGATTGAACGTCCACCACATGTAACACTATGGTGGTTGTCTCCTCTCTCCACTCTCCTTCTTCTTCCTCCTCCATCTACT : TCTACTCAATCTCTCCCTCTCTTCGTTACTTTCGACGTTTCTATACATTTCCATCCAGAAGAAATAATTCCAACTCCAATGGCGGTGCGGTCTTGCTCGTCAAGGCTTATATGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGAAGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAATTTCGAGATCGACGTGGCAAG : ACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAAATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAG : AAGCGATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATCTGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAGAAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAATTTCTTAAGCAAAACAGTTTGAATCAGTGAGGCATGAAATTTATCATCATTTTTAAAGTAAATTTTAGGTACTGGTGACTAACACCAACAGGAAGATTATCCCACAAACATTCGGTATAGGAAATCACAGCCACATGTCATGAATGACAAATCTTCTTCGCACAATGTCGCCAACTAATTAAAAAACATTGCATGTGTATGCTGCCTGCTCTCTTTCTTTTGTGATCAGTCTGCATTTTCTACTTGCACTTGAAAGATATAGTGGCTCTGATTTGTATTCAAAA</gDNA_template>
            <first_frame> K  Y  Q  N  K  D  *  T  S  T  T  C  N  T  M  V  V  V  S  S  L  H  S  P  S  S  S  S  S  I  Y   : F  Y  S  I  S  P  S  L  R  Y  F  R  R  F  Y  T  F  P  S  R  R  N  N  S  N  S  N  G  G  A  V  L  L  V  K  A  Y  M  D  E  T  T  N  P  I  S  S  F  A  N  K  V  I  G  S  L  P  V  F  G  L  I  A  R  I  V  N  E  E  G  G  V  G  G  D  F  I  D  F  A  E  F  R  R  R  V  G  N  K  C  S  I  N  D  S  R  A  F  Y  E  F  R  D  R  R  G  K  :  T  G  D  P  L  Y  V  L  L  C  C  W  L  A  A  V  G  A  G  L  L  K  S  E  E  I  L  E  G  V  A  R  L  S  L  A  N  D  I  E  F  E  E  Q  N  F  I  A  M  M  N  E  A  R  E  :  K  R  S  K  L  G  A  P  A  P  T  I  P  M  E  F  R  A  E  K  A  L  E  A  I  H  V  C  C  Y  G  R  D  L  I  D  E  E  D  E  K  L  L  S  T  M  L  N  A  V  F  P  T  V  G  R  Q  K  V  E  I  I  V  K  E  K  A  K  R  M  A  D  G  T  E  E  I  K  Y  E  P  K  Q  L  S  K  E  A  V  Q  M  Q  M  K  D  L  E  F  L  K  Q  N  S  L  N  Q  *  G  M  K  F  I  I  I  F  K  V  N  F  R  Y  W  *  L  T  P  T  G  R  L  S  H  K  H  S  V  *  E  I  T  A  T  C  H  E  *  Q  I  F  F  A  Q  C  R  Q  L  I  K  K  H  C  M  C  M  L  P  A  L  F  L  L  *  S  V  C  I  F  Y  L  H  L  K  D  I  V  A  L  I  C  I  Q   </first_frame>
            <second_frame>  N  I  K  T  K  I  E  R  P  P  H  V  T  L  W  W  L  S  P  L  S  T  L  L  L  L  P  P  P  S  T  :  S  T  Q  S  L  P  L  F  V  T  F  D  V  S  I  H  F  H  P  E  E  I  I  P  T  P  M  A  V  R  S  C  S  S  R  L  I  W  M  R  P  Q  I  Q  F  L  V  L  L  I  R  S  S  V  H  C  L  F  L  V  S  *  P  E  L  S  M  R  K  V  V  L  E  A  I  L  L  I  L  R  S  S  G  G  E  S  V  T  S  V  P  L  M  I  Q  E  L  F  M  N  F  E  I  D  V  A  R :   Q  G  I  L  C  M  C  Y  C  V  V  G  *  L  Q  *  E  L  V  Y  S  N  L  R  K  F  W  K  G  *  Q  G  L  V  *  Q  M  I  L  N  L  K  N  K  T  S  S  Q  *  *  M  K  Q  G  R :   S  D  Q  S  W  E  L  Q  H  L  Q  S  P  W  N  F  V  L  R  K  L  L  K  L  Y  M  C  V  A  M  E  G  I  *  L  M  K  K  M  K  N  C  *  V  P  C  L  M  L  S  F  L  Q  S  G  G  K  R  *  K  S  L  S  K  R  R  Q  R  E  W  Q  M  E  L  K  K  S  N  M  S  P  S  N  Y  Q  K  K  Q  F  R  C  K  *  K  T  L  N  F  L  S  K  T  V  *  I  S  E  A  *  N  L  S  S  F  L  K  *  I  L  G  T  G  D  *  H  Q  Q  E  D  Y  P  T  N  I  R  Y  R  K  S  Q  P  H  V  M  N  D  K  S  S  S  H  N  V  A  N  *  L  K  N  I  A  C  V  C  C  L  L  S  F  F  C  D  Q  S  A  F  S  T  C  T  *  K  I  *  W  L  *  F  V  F  K  </second_frame>
            <third_frame>   I  S  K  Q  R  L  N  V  H  H  M  *  H  Y  G  G  C  L  L  S  P  L  S  F  F  F  L  L  H  L  L :   L  L  N  L  S  L  S  S  L  L  S  T  F  L  Y  I  S  I  Q  K  K  *  F  Q  L  Q  W  R  C  G  L  A  R  Q  G  L  Y  G  *  D  H  K  S  N  F  *  F  C  *  *  G  H  R  F  T  A  C  F  W  S  H  S  Q  N  C  Q  *  G  R  W  C  W  R  R  F  Y  *  F  C  G  V  Q  E  A  S  R  *  Q  V  F  H  *  *  F  K  S  F  L  *  I  S  R  S  T  W  Q   : D  R  G  S  S  V  C  A  T  V  L  L  V  S  C  S  R  S  W  F  T  Q  I  *  G  N  F  G  R  G  S  K  A  *  F  S  K  *  Y  *  I  *  R  T  K  L  H  R  N  D  E  *  S  K  G   : E  A  I  K  V  G  S  S  S  T  Y  N  P  H  G  I  S  C  *  E  S  S  *  S  Y  T  C  V  L  L  W  K  G  S  D  *  *  R  R  *  K  T  A  K  Y  H  A  *  C  C  L  S  Y  S  R  A  A  K  G  R  N  H  C  Q  R  E  G  K  E  N  G  R  W  N  *  R  N  Q  I  *  A  Q  A  I  I  K  R  S  S  S  D  A  N  E  R  P  *  I  S  *  A  K  Q  F  E  S  V  R  H  E  I  Y  H  H  F  *  S  K  F  *  V  L  V  T  N  T  N  R  K  I  I  P  Q  T  F  G  I  G  N  H  S  H  M  S  *  M  T  N  L  L  R  T  M  S  P  T  N  *  K  T  L  H  V  Y  A  A  C  S  L  S  F  V  I  S  L  H  F  L  L  A  L  E  R  Y  S  G  S  D  L  Y  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73495" stop="73423"/>
                    <exon start="72078" stop="71759"/>
                    <exon start="71681" stop="71517"/>
                    <exon start="71043" stop="70723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTTCNTMVVVSSLHSPSSSSSIYFYSISPSLRYFRRFYTFPSRRNNSNSNGGAVLLVKAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSINDSRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFIAMMNEAREKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIDEEDEKLLSTMLNAVFPTVGRQKVEIIVKEKAKRMADGTEEIKYEPKQLSKEAVQMQMKDLEFLKQNSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="71163" PGL_stop="71622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71163" e_stop="71622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="71163" e_stop="71622" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71163" stop="71622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAAATCTAATGAAGCCCGTAATGGGATAGCTGCAAACATAAATTTACTCGATATACTATTGTAAGCAAGCTTCCCAATAAGAGTTAGGCAGAGCTATGCTGCTTGAATCGTCCAAGAATACTGTCTGCATGTGTCGATACTCTAAAATATATGCAGTTTTGGAGGATTCGAACAACATGGAGGCAGAGTTCTAAGTACCACATCAAAAGAATGAAGCATAAACAGAAGTTGAAGTATGCCTCAAAGACAGTATCCGAGTAAGTATGCTATAAATTTACTGATAAGCATTGAAAGTAAGGTAACATAAATGAAAAGAAGCTAAAAATCGTTGGCAAATGAAATCTTACGAACCTCCCTTGCTTCATTCATCATTGCGATGAAGTTTTGTTCTTCAAATTCAATATCATTTGCTAAACTAAGCCTTGCTACCCCTTCCAAAATTTCCTCAGATTTGAGT</gDNA_template>
            <first_frame> C  *  I  *  *  S  P  *  W  D  S  C  K  H  K  F  T  R  Y  T  I  V  S  K  L  P  N  K  S  *  A  E  L  C  C  L  N  R  P  R  I  L  S  A  C  V  D  T  L  K  Y  M  Q  F  W  R  I  R  T  T  W  R  Q  S  S  K  Y  H  I  K  R  M  K  H  K  Q  K  L  K  Y  A  S  K  T  V  S  E  *  V  C  Y  K  F  T  D  K  H  *  K  *  G  N  I  N  E  K  K  L  K  I  V  G  K  *  N  L  T  N  L  P  C  F  I  H  H  C  D  E  V  L  F  F  K  F  N  I  I  C  *  T  K  P  C  Y  P  F  Q  N  F  L  R  F  E  </first_frame>
            <second_frame>  A  K  S  N  E  A  R  N  G  I  A  A  N  I  N  L  L  D  I  L  L  *  A  S  F  P  I  R  V  R  Q  S  Y  A  A  *  I  V  Q  E  Y  C  L  H  V  S  I  L  *  N  I  C  S  F  G  G  F  E  Q  H  G  G  R  V  L  S  T  T  S  K  E  *  S  I  N  R  S  *  S  M  P  Q  R  Q  Y  P  S  K  Y  A  I  N  L  L  I  S  I  E  S  K  V  T  *  M  K  R  S  *  K  S  L  A  N  E  I  L  R  T  S  L  A  S  F  I  I  A  M  K  F  C  S  S  N  S  I  S  F  A  K  L  S  L  A  T  P  S  K  I  S  S  D  L  S </second_frame>
            <third_frame>   L  N  L  M  K  P  V  M  G  *  L  Q  T  *  I  Y  S  I  Y  Y  C  K  Q  A  S  Q  *  E  L  G  R  A  M  L  L  E  S  S  K  N  T  V  C  M  C  R  Y  S  K  I  Y  A  V  L  E  D  S  N  N  M  E  A  E  F  *  V  P  H  Q  K  N  E  A  *  T  E  V  E  V  C  L  K  D  S  I  R  V  S  M  L  *  I  Y  *  *  A  L  K  V  R  *  H  K  *  K  E  A  K  N  R  W  Q  M  K  S  Y  E  P  P  L  L  H  S  S  L  R  *  S  F  V  L  Q  I  Q  Y  H  L  L  N  *  A  L  L  P  L  P  K  F  P  Q  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0236E02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="85810" PGL_stop="83797"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85810" e_stop="85435"/>
            <exon e_start="85118" e_stop="84828"/>
            <exon e_start="84718" e_stop="84519"/>
            <exon e_start="83898" e_stop="83797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="0.920"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.879" e_score="0.975"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="85810" e_stop="85435" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="85434" i_stop="85119" i_length="316"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="85118" e_stop="84828" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="84827" i_stop="84719" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="84718" e_stop="84519" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.879">
            <gDNA_intron_boundary i_start="84518" i_stop="83899" i_length="620"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="83898" e_stop="83797" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85810" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84519"/>
              <exon start="83898" stop="83797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g01480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85676" stop="85435"/>
              <exon start="85118" stop="84828"/>
              <exon start="84718" stop="84694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGACCTGAGTCTCTGGTATTCCAATTTTATCCTTATCTCTTTCTACTCTCCTCCTGTCCATTACACCTATTTTCAATCTCAATTTCTTCATTAATAACAGTTGCATTTTGTCAATTTTTTTCCCTCCAAACCCCAAATGTCCTCTAGAATTGCTTGACTGTGTAAACAAACTAGTTGTAAATTCATCAATGGCAGCATCTGTTTCCTGCCACTATTTTTCTTCCCCATTAACAACTTCCACCAAATCCATCAAGCCTAAGCTCAATTACAGCCATTTCGCACCTGCTCTTAGTAAAGGATCGATCCGCCATTTTGTTCCACTATGTTCTTCACAACGCTCGCTTCCTTCTGAATCGGAATGCCAAGACAAAGAG : AAAGATTGGTTTTTGTCATTGAAGAAATGTGCAGCTGCAGTAGCATTGTCGGTTAGTTTGATTAGTGGACTACCTGGATCGCAATGGTTGGGTCCTGCTCATGCGAGCACCCCAGCATTGCCAGATGTCTCTGTATTGATCTCAGGGCCACCAATTAAGGATCCAGGGGCGTTATTGAGGTATGCATTGCCTATAGACAACAAGGCGATAAGAGAAGTCCAAAAACCCCTTGAAGATATTACTGATAGTCTCAAGATTGCTGGTGTCAAGGCGCTTGACTCTGTTGAAAGA : AATACAAGACAAGCATCTCGAGCTCTCAAGGAAGGGAAAACCTTGATTATTTCAGGAGTAGCTAAGTCAAAGACTGACCACGCTATTGAATTGCTAAACAAACTAGAAGCTGGGTTAGGTGAGCTTCAACAAATTGTTGAAGACAGGACTCGAGATGCTGTTGCACCTAAACAGAAGGAATTGCTTAACTATGTTGGAGG : CTGAGATCTTCCTGGGGCATTCGATTTCTGCAGTGTTGAAGAGGATATGGTGGATGGATTCCCATATGAAGTACCTGAAGAATATCAAAATATGCCTTTACT</gDNA_template>
            <first_frame> V  D  L  S  L  W  Y  S  N  F  I  L  I  S  F  Y  S  P  P  V  H  Y  T  Y  F  Q  S  Q  F  L  H  *  *  Q  L  H  F  V  N  F  F  P  S  K  P  Q  M  S  S  R  I  A  *  L  C  K  Q  T  S  C  K  F  I  N  G  S  I  C  F  L  P  L  F  F  F  P  I  N  N  F  H  Q  I  H  Q  A  *  A  Q  L  Q  P  F  R  T  C  S  *  *  R  I  D  P  P  F  C  S  T  M  F  F  T  T  L  A  S  F  *  I  G  M  P  R  Q  R   : E  R  L  V  F  V  I  E  E  M  C  S  C  S  S  I  V  G  *  F  D  *  W  T  T  W  I  A  M  V  G  S  C  S  C  E  H  P  S  I  A  R  C  L  C  I  D  L  R  A  T  N  *  G  S  R  G  V  I  E  V  C  I  A  Y  R  Q  Q  G  D  K  R  S  P  K  T  P  *  R  Y  Y  *  *  S  Q  D  C  W  C  Q  G  A  *  L  C  *  K   : K  Y  K  T  S  I  S  S  S  Q  G  R  E  N  L  D  Y  F  R  S  S  *  V  K  D  *  P  R  Y  *  I  A  K  Q  T  R  S  W  V  R  *  A  S  T  N  C  *  R  Q  D  S  R  C  C  C  T  *  T  E  G  I  A  *  L  C  W  R  :  L  R  S  S  W  G  I  R  F  L  Q  C  *  R  G  Y  G  G  W  I  P  I  *  S  T  *  R  I  S  K  Y  A  F  T </first_frame>
            <second_frame>  L  T  *  V  S  G  I  P  I  L  S  L  S  L  S  T  L  L  L  S  I  T  P  I  F  N  L  N  F  F  I  N  N  S  C  I  L  S  I  F  F  P  P  N  P  K  C  P  L  E  L  L  D  C  V  N  K  L  V  V  N  S  S  M  A  A  S  V  S  C  H  Y  F  S  S  P  L  T  T  S  T  K  S  I  K  P  K  L  N  Y  S  H  F  A  P  A  L  S  K  G  S  I  R  H  F  V  P  L  C  S  S  Q  R  S  L  P  S  E  S  E  C  Q  D  K  E  :  K  D  W  F  L  S  L  K  K  C  A  A  A  V  A  L  S  V  S  L  I  S  G  L  P  G  S  Q  W  L  G  P  A  H  A  S  T  P  A  L  P  D  V  S  V  L  I  S  G  P  P  I  K  D  P  G  A  L  L  R  Y  A  L  P  I  D  N  K  A  I  R  E  V  Q  K  P  L  E  D  I  T  D  S  L  K  I  A  G  V  K  A  L  D  S  V  E  R  :  N  T  R  Q  A  S  R  A  L  K  E  G  K  T  L  I  I  S  G  V  A  K  S  K  T  D  H  A  I  E  L  L  N  K  L  E  A  G  L  G  E  L  Q  Q  I  V  E  D  R  T  R  D  A  V  A  P  K  Q  K  E  L  L  N  Y  V  G  G :   *  D  L  P  G  A  F  D  F  C  S  V  E  E  D  M  V  D  G  F  P  Y  E  V  P  E  E  Y  Q  N  M  P  L   </second_frame>
            <third_frame>   *  P  E  S  L  V  F  Q  F  Y  P  Y  L  F  L  L  S  S  C  P  L  H  L  F  S  I  S  I  S  S  L  I  T  V  A  F  C  Q  F  F  S  L  Q  T  P  N  V  L  *  N  C  L  T  V  *  T  N  *  L  *  I  H  Q  W  Q  H  L  F  P  A  T  I  F  L  P  H  *  Q  L  P  P  N  P  S  S  L  S  S  I  T  A  I  S  H  L  L  L  V  K  D  R  S  A  I  L  F  H  Y  V  L  H  N  A  R  F  L  L  N  R  N  A  K  T  K  R :   K  I  G  F  C  H  *  R  N  V  Q  L  Q  *  H  C  R  L  V  *  L  V  D  Y  L  D  R  N  G  W  V  L  L  M  R  A  P  Q  H  C  Q  M  S  L  Y  *  S  Q  G  H  Q  L  R  I  Q  G  R  Y  *  G  M  H  C  L  *  T  T  R  R  *  E  K  S  K  N  P  L  K  I  L  L  I  V  S  R  L  L  V  S  R  R  L  T  L  L  K  E :   I  Q  D  K  H  L  E  L  S  R  K  G  K  P  *  L  F  Q  E  *  L  S  Q  R  L  T  T  L  L  N  C  *  T  N  *  K  L  G  *  V  S  F  N  K  L  L  K  T  G  L  E  M  L  L  H  L  N  R  R  N  C  L  T  M  L  E   : A  E  I  F  L  G  H  S  I  S  A  V  L  K  R  I  W  W  M  D  S  H  M  K  Y  L  K  N  I  K  I  C  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0236E02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85800" stop="85435"/>
                    <exon start="85118" stop="84828"/>
                    <exon start="84718" stop="84519"/>
                    <exon start="83898" stop="83895"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGIPILSLSLSTLLLSITPIFNLNFFINNSCILSIFFPPNPKCPLELLDCVNKLVVNSSMAASVSCHYFSSPLTTSTKSIKPKLNYSHFAPALSKGSIRHFVPLCSSQRSLPSESECQDKEKDWFLSLKKCAAAVALSVSLISGLPGSQWLGPAHASTPALPDVSVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNTRQASRALKEGKTLIISGVAKSKTDHAIELLNKLEAGLGELQQIVEDRTRDAVAPKQKELLNYVGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 19 chains have been computed
$ 
$ memory statistics:
$ 161472 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 16147 bytes was the average size of a spliced alignment
$ 14464 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1808 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 20 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:30:15
-->
