<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:14:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222944" ref_strand="+" ref_description="SGN-E222944 [cLEL-14-I9](-)">
      <seq>ggcacgaggaatcgtgatcaagttatagagggaatgaatttagttgtgatgaaccagggcgtagacgaaaggatatttggtatttggtaaagaaaactcgggttcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagcaatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttcatgaattatttctttcagttgcttagaagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="12615" stop="26777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12909" g_stop="12965" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12966" i_stop="13094" i_length="129">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13095" g_stop="13154" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="117" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13155" i_stop="17872" i_length="4718">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17873" g_stop="18147" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="392" r_length="275" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E222944" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12909" e_stop="12965"/>
          <exon e_start="13095" e_stop="13154"/>
          <exon e_start="17873" e_stop="18147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAAGAATCGTGATCAAGTTATAGAGGGGATGGATTTAGTTGTGATGAACCAGGTATTTTTGGTTTCTTATATGGGTGCTTTTTTATTTTCATAAAAAATATTGTGTGGGTGGCTGATGAACAATGTTTTGACAATGTGTAACTAGGTGTGATTGGCTTGATTGAAATCTTTTCTTTTGCAGGGCGTAGACGGAAGGATATTTGGTATTTGGTAAAGAAAACTCGGGTTCAAGGGAAGATAGGTAATTTTTGTTTGATCAATTCCGTATGATGCTTTAACATGCTAAATTCCAATGTGGATTTATGAATTCCTGTTGTGTATGTGATAAACAATTGGTGCACCTGAAAACTAAAAAAATAACTACAGACTCAATCTCAAATCAATTGAGGTTGGGTTTATGAATCCTCACTCATTGGGATAATACTCAATCATGTGAAAAACTTGTGCTCCTGAAAATAACTAAAACGAATAATTTGATTTAAACTGTATTAGTAAAGTTAATACGGAGAATGAATGTCTAGTGCAGTAGCAAATTTCCAAAATGGGCCAACGATGCCCTTAACAAAGTGGTAACTTCTGTAAATGTATCCCCACTGCGTGAGAAATTATAGAAGAAAAAGTATGTCTAAATGGAAACATAAAATATACAGGAGAATTTCCTCCCGCTCTTCATCCTATGCACGTCAGTCACCTGTGTATGTTTGTGTTTGCATGTCCTTTCGGGTGAGATTTCTTCTTTGTTTCCGCTGAATTCATGTTCATCCTTTTTTTTTATTTCATCATTTTGTCTTAATGCAATGAGAAAACATAGTATTTAGATGATTTGTAGAGGAGTACAGAAAGGGGACTCATTGTCCATGAAGTACATGAATGAAAATCATTATAACTAACTAGTGCTGTTAAATCACTTTAATAGGCCTAAAGGAACTATACTTATCCAAAGAATTACCACAAGAAGCTGTTGCCACTCATCTTGAAGGATTTCTCTGTTACGAAGAAAACGGTTTTGAAACTAATAATTACAAGAAAAGATAATAACACAAAAGATCCACTTCCTGGCAGGAAAATAGATTCTGGTCTGCATTATTCACTTTGAACTTTTCTAATTCGAGTATAGTCTTTCAATCCGTGTAATATATATTTCTAGTATAAGTACAAAATTATCCATTTACAAAATGTGGTGAACTACTATATAATTTGGTGTAGGAACTTCCAGATTAGCTGGAGAAAACATTCAGGAGCGAGCTTCTCGATCTAATCAGGCTCCTGAATGCTCCTTCTAATCTCTTCTCAATGCTGTCAAGTTGAGCCTCAAAAGTCTCCACTTTTGTTTCCATGTTCCTACTGTTTTCTAGGCCTTCATGTTCTATTTTTCCATTGTGTATCAGTTTTGAAACCAATGACCATTTTGGCTGCTTCGGCTTCAAAAGTGGCACTGACAAGAAGGGCAAGAGCATTTGGAAAATCAAAATGCAAACTGCATTGACTTCCCTTAGTGCTCTAATCACAGCTATTGTCTCCTGATCTGCTTCTAAGAATGCTGCGGTGAGAGTCTCACAGTTCACTTGCTTCAAGGACAAGGCTAATCTTTTGGCGTCCTTCTTCATTTTCTTGCTGAAAGTAGTGAACCTTGCAATTCCTGCTTCTGCACTTGAATCTCCTTTTCGTCTTCTGAATGAGGATTGAAGAGCTCTTATGTTTTCCTTATAGTGAGAGACAAGTTCCCTTGTAGTGCCACAAACATCAAGAATCCTAATCGAGTTCCCCAGTAACTCCTCAAACCATTTAACATGTTGGTGCTGGGAGAGTATCCGAAGAGTTTGAGTCGACTTAAGAAGATCATCCATACACTTGTGTAACTCCTCCAACCCGAGCAAACTATTACAAATTGTCTCTGCGGTTGGTGCAACTGATGTCTCCAATCCTTTAAGCTTATTCAACACCTCTTCAACTCTCTGAGTTGTGGGGTGTGATCTGTTGGGCAAACTGATGGATCGAAAAGTCTTAGTTTTTGAACAATCAAGAGCAGCCATGGCTTCTTATGTTTTAATTTGAGTTTCTTTGTGAGAAGAGAGAATAAATTTGGTGAGCAATGAGCATCAACCAAAGGACATTTATATAGGTCGATGGCACAATAAGTGTGTAACGATTCAAAAAAAAAGAGAATTATGTAAATAAGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTAGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAATTAGTCCTCTCTCTCTCACGCTTCTAAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAAATATCAATAATTTTCATGCTTGAAGAACTCACAAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTCGTCGAGAGAGGTATACTTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGAGTTTCTCTCATGGAATTCTTTCTCCAAGAGTACTTTCTTTCGGACGTTTCTTAAACTCTTGAAACTAAGGTTGTTCCCCTTCGTATGTCCTTGTCCTTAGCTCCCTAATGAATTTGTAGGATGGGTATGTTGTGCTGCTAGATTTTTGCATGAATGATGTGTTTAAATTAAATATGAATGTGTTTATGTGCGGGGAATCGCGATAATGATCATCAGAATATGATCGGAAAAAGTTGATGTATGGGTGTGTATAGGGCAGTGTTTTAGGCATTGTTTTGGGGTATATAAGTTGTTTATTTATCATGTATTTTATGTGTGAAATGGGTGTGCAATGCGATGTTTATTTTGATGAAGCATAGTGAAGTGAATGAACCATGAAATCTCCCTAAGAACTAATGTGAAACTTGATGAAAAAAAGTGCAGAAAAATAGTGGAATAAATTTCCAAAAACATAGAAATAGGTTTAAAAAGAATCTGGAAATTTTTGGGATGTCAAAGAATTAAAAAAATATTAAGGGAATAAAGGTGAGGCTGTGGGGGTTCGAACCCACCACCTCATAGCCTCCATTCCCAGCGAAATTAAGAGGAAAATGAGGGGGGCTGTGGGGGTTCGAACCCACAACCTCCCTATTCAAGCGAATTTAATTAAAAATAATAATAATAGTAAATTAAAATTCTAATTAAAGTTGGAAAATTAATTCTCTTATGTAAACATGGAGATTTAATTTAGAATCTTAATTAAAAATAGGATATTAATTCTTTTATGTAAATATTGAGATTTAAATTGGAATTCTAATTAAATTAGAAAATTATTCTTTCATGTAAATGATTGAAATTTAATTTAGAATTCTAATTAAAATAGAAAATTTATTATTTCACGAAAATGTTGAGACTTAACTTAGAGTTCTAAATTTATGAATATTAGAACTAAAATCAATGAAAAATATAAATGATATCCAAATAATTCAAAATTTGGGTTCTCGTGTCCAAACCTCCGTATTGATACATAAGTCATACGTGAGTGAAATATTCAAGAATAATGTCATCTACTTAGATCAAAAATCAAAGATCTTGGCATATATACAAGATACATAAGTCTTGTAATACATAATCTTAGAAAAACAAGAATTCACTTAACGAACTATAAATGAAGCCTCATGGCTTGTATGTATAGATATATAAGTTTAACATACGTTCAAGAATAAGTGAACCTAAGATATACGTAATGAAATGAAGAATGTGGCGACAATCATGATGTGAGGTTAATGCATATGATGAGAGCAATCTTAAATGAGCTTAAGTAAATGTTACCGATACATACTCACCAATGAGAGTGTAAGATAATGAAGAGACTAGTCTCTATGAATACTCTAACAAAAATATTGAGTTTAAAACACTTAATACTAATGATGAGATGAGAAATCATCTATTGAGCTATGATGTCTTCATACTAGAAGCAAACTTCTATGATGTATGAGTTGCATGTAATGGAACTTTATACCGAGCACCGATAGGCTAGCTATGAGTGGTGATGCCTTCTTTCGGGAAGGGCGGAGGTTCACGTAATTCTCATGAGATGAGACTGTCCGGCTTGCCGGGTATGGGTCTCCATACATCTCCTAGTCTTTGAACCTATATTGCCACTATAGGGATCTGGCGGGGTTAAATTCCCATATACGCTAGCATGTTATTGAATCGCTTTGGCCGGTGATTCCACCTCTTTTCGGTGTGGGAAAGACACTGGATTTCATGATGCTCACATGATCTATGTCGGTTAAAGTTAAAGTTCCCAATGAATGAATGAGGCCAGCCTCAAACGAATCATATAAAGAAATGAATGATACCGAAGGTGTTAGGATAGGATAATCAAGAGGTGAGCTAGATTCAGGTAATGACATTAGGTCATTCCTGATCATTGCACAGCAAACCCGATGAGAGTCTTAAACTACATCCTAGGTATACCTGGTGTTCGCACTGGCCTATGAATGAATTGAAATGAAATACGAATGAATGAGTGAAGCAGACTCTGTGTTTGCTAAAGAAGGCTCCCTAGTTGAGGTCCCATATGTTGAGCCCTCATTTTGGAAAGTCTTAAAGTTAAGTCTATGATAATAAGGTCTCATGGTATACGAATGAATAATATGAAAGAAAGTATGTGTTATATGTTATGTGTTATATGAATATGTTATGTTTTGTGTGCTATACGATAATTATAATGATGCATGTCACTCTCATGGCATAACTTTCCCAATCTCAATTTGGCAAGTCCACTGACTTGACTTCCAAAAATCATGTTGTTAGGAAAGAGCTATTCTTCCTCATGCATGTCCCTGGTGTGTACTTGCATATACTCATACTTAGTACAAGTGTGTACTAATTCCATACGAACATCTACTTTTAGGTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</genome_strand>
        <mrna_strand>GGCACGAGGAATCGTGATCAAGTTATAGAGGGAATGAATTTAGTTGTGATGAACCAG.................................................................................................................................GGCGTAGACGAAAGGATATTTGGTATTTGGTAAAGAAAACTCGGGTTCAAGGGAAGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCACAGGTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCAATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTCATGAATTATTTCTTTCAGTTGCTTAGAAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217225" ref_strand="+" ref_description="SGN-E217225 [cLEL-21-H17](-)">
      <seq>aatcgtgatcaagttatagaggggatggatttagttgtgatgaaccagggcgtagacggaaggatatttggtatttggtaaagaaaactcgggttcaagggaagataggtgcaagcacaggtggacgctagagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="12618" stop="26777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12918" g_stop="12965" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12966" i_stop="13094" i_length="129">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13095" g_stop="13154" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="108" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13155" i_stop="17872" i_length="4718">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17873" g_stop="18147" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="383" r_length="275" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E217225" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12918" e_stop="12965"/>
          <exon e_start="13095" e_stop="13154"/>
          <exon e_start="17873" e_stop="18147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGTGATCAAGTTATAGAGGGGATGGATTTAGTTGTGATGAACCAGGTATTTTTGGTTTCTTATATGGGTGCTTTTTTATTTTCATAAAAAATATTGTGTGGGTGGCTGATGAACAATGTTTTGACAATGTGTAACTAGGTGTGATTGGCTTGATTGAAATCTTTTCTTTTGCAGGGCGTAGACGGAAGGATATTTGGTATTTGGTAAAGAAAACTCGGGTTCAAGGGAAGATAGGTAATTTTTGTTTGATCAATTCCGTATGATGCTTTAACATGCTAAATTCCAATGTGGATTTATGAATTCCTGTTGTGTATGTGATAAACAATTGGTGCACCTGAAAACTAAAAAAATAACTACAGACTCAATCTCAAATCAATTGAGGTTGGGTTTATGAATCCTCACTCATTGGGATAATACTCAATCATGTGAAAAACTTGTGCTCCTGAAAATAACTAAAACGAATAATTTGATTTAAACTGTATTAGTAAAGTTAATACGGAGAATGAATGTCTAGTGCAGTAGCAAATTTCCAAAATGGGCCAACGATGCCCTTAACAAAGTGGTAACTTCTGTAAATGTATCCCCACTGCGTGAGAAATTATAGAAGAAAAAGTATGTCTAAATGGAAACATAAAATATACAGGAGAATTTCCTCCCGCTCTTCATCCTATGCACGTCAGTCACCTGTGTATGTTTGTGTTTGCATGTCCTTTCGGGTGAGATTTCTTCTTTGTTTCCGCTGAATTCATGTTCATCCTTTTTTTTTATTTCATCATTTTGTCTTAATGCAATGAGAAAACATAGTATTTAGATGATTTGTAGAGGAGTACAGAAAGGGGACTCATTGTCCATGAAGTACATGAATGAAAATCATTATAACTAACTAGTGCTGTTAAATCACTTTAATAGGCCTAAAGGAACTATACTTATCCAAAGAATTACCACAAGAAGCTGTTGCCACTCATCTTGAAGGATTTCTCTGTTACGAAGAAAACGGTTTTGAAACTAATAATTACAAGAAAAGATAATAACACAAAAGATCCACTTCCTGGCAGGAAAATAGATTCTGGTCTGCATTATTCACTTTGAACTTTTCTAATTCGAGTATAGTCTTTCAATCCGTGTAATATATATTTCTAGTATAAGTACAAAATTATCCATTTACAAAATGTGGTGAACTACTATATAATTTGGTGTAGGAACTTCCAGATTAGCTGGAGAAAACATTCAGGAGCGAGCTTCTCGATCTAATCAGGCTCCTGAATGCTCCTTCTAATCTCTTCTCAATGCTGTCAAGTTGAGCCTCAAAAGTCTCCACTTTTGTTTCCATGTTCCTACTGTTTTCTAGGCCTTCATGTTCTATTTTTCCATTGTGTATCAGTTTTGAAACCAATGACCATTTTGGCTGCTTCGGCTTCAAAAGTGGCACTGACAAGAAGGGCAAGAGCATTTGGAAAATCAAAATGCAAACTGCATTGACTTCCCTTAGTGCTCTAATCACAGCTATTGTCTCCTGATCTGCTTCTAAGAATGCTGCGGTGAGAGTCTCACAGTTCACTTGCTTCAAGGACAAGGCTAATCTTTTGGCGTCCTTCTTCATTTTCTTGCTGAAAGTAGTGAACCTTGCAATTCCTGCTTCTGCACTTGAATCTCCTTTTCGTCTTCTGAATGAGGATTGAAGAGCTCTTATGTTTTCCTTATAGTGAGAGACAAGTTCCCTTGTAGTGCCACAAACATCAAGAATCCTAATCGAGTTCCCCAGTAACTCCTCAAACCATTTAACATGTTGGTGCTGGGAGAGTATCCGAAGAGTTTGAGTCGACTTAAGAAGATCATCCATACACTTGTGTAACTCCTCCAACCCGAGCAAACTATTACAAATTGTCTCTGCGGTTGGTGCAACTGATGTCTCCAATCCTTTAAGCTTATTCAACACCTCTTCAACTCTCTGAGTTGTGGGGTGTGATCTGTTGGGCAAACTGATGGATCGAAAAGTCTTAGTTTTTGAACAATCAAGAGCAGCCATGGCTTCTTATGTTTTAATTTGAGTTTCTTTGTGAGAAGAGAGAATAAATTTGGTGAGCAATGAGCATCAACCAAAGGACATTTATATAGGTCGATGGCACAATAAGTGTGTAACGATTCAAAAAAAAAGAGAATTATGTAAATAAGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTAGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAATTAGTCCTCTCTCTCTCACGCTTCTAAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAAATATCAATAATTTTCATGCTTGAAGAACTCACAAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTCGTCGAGAGAGGTATACTTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGAGTTTCTCTCATGGAATTCTTTCTCCAAGAGTACTTTCTTTCGGACGTTTCTTAAACTCTTGAAACTAAGGTTGTTCCCCTTCGTATGTCCTTGTCCTTAGCTCCCTAATGAATTTGTAGGATGGGTATGTTGTGCTGCTAGATTTTTGCATGAATGATGTGTTTAAATTAAATATGAATGTGTTTATGTGCGGGGAATCGCGATAATGATCATCAGAATATGATCGGAAAAAGTTGATGTATGGGTGTGTATAGGGCAGTGTTTTAGGCATTGTTTTGGGGTATATAAGTTGTTTATTTATCATGTATTTTATGTGTGAAATGGGTGTGCAATGCGATGTTTATTTTGATGAAGCATAGTGAAGTGAATGAACCATGAAATCTCCCTAAGAACTAATGTGAAACTTGATGAAAAAAAGTGCAGAAAAATAGTGGAATAAATTTCCAAAAACATAGAAATAGGTTTAAAAAGAATCTGGAAATTTTTGGGATGTCAAAGAATTAAAAAAATATTAAGGGAATAAAGGTGAGGCTGTGGGGGTTCGAACCCACCACCTCATAGCCTCCATTCCCAGCGAAATTAAGAGGAAAATGAGGGGGGCTGTGGGGGTTCGAACCCACAACCTCCCTATTCAAGCGAATTTAATTAAAAATAATAATAATAGTAAATTAAAATTCTAATTAAAGTTGGAAAATTAATTCTCTTATGTAAACATGGAGATTTAATTTAGAATCTTAATTAAAAATAGGATATTAATTCTTTTATGTAAATATTGAGATTTAAATTGGAATTCTAATTAAATTAGAAAATTATTCTTTCATGTAAATGATTGAAATTTAATTTAGAATTCTAATTAAAATAGAAAATTTATTATTTCACGAAAATGTTGAGACTTAACTTAGAGTTCTAAATTTATGAATATTAGAACTAAAATCAATGAAAAATATAAATGATATCCAAATAATTCAAAATTTGGGTTCTCGTGTCCAAACCTCCGTATTGATACATAAGTCATACGTGAGTGAAATATTCAAGAATAATGTCATCTACTTAGATCAAAAATCAAAGATCTTGGCATATATACAAGATACATAAGTCTTGTAATACATAATCTTAGAAAAACAAGAATTCACTTAACGAACTATAAATGAAGCCTCATGGCTTGTATGTATAGATATATAAGTTTAACATACGTTCAAGAATAAGTGAACCTAAGATATACGTAATGAAATGAAGAATGTGGCGACAATCATGATGTGAGGTTAATGCATATGATGAGAGCAATCTTAAATGAGCTTAAGTAAATGTTACCGATACATACTCACCAATGAGAGTGTAAGATAATGAAGAGACTAGTCTCTATGAATACTCTAACAAAAATATTGAGTTTAAAACACTTAATACTAATGATGAGATGAGAAATCATCTATTGAGCTATGATGTCTTCATACTAGAAGCAAACTTCTATGATGTATGAGTTGCATGTAATGGAACTTTATACCGAGCACCGATAGGCTAGCTATGAGTGGTGATGCCTTCTTTCGGGAAGGGCGGAGGTTCACGTAATTCTCATGAGATGAGACTGTCCGGCTTGCCGGGTATGGGTCTCCATACATCTCCTAGTCTTTGAACCTATATTGCCACTATAGGGATCTGGCGGGGTTAAATTCCCATATACGCTAGCATGTTATTGAATCGCTTTGGCCGGTGATTCCACCTCTTTTCGGTGTGGGAAAGACACTGGATTTCATGATGCTCACATGATCTATGTCGGTTAAAGTTAAAGTTCCCAATGAATGAATGAGGCCAGCCTCAAACGAATCATATAAAGAAATGAATGATACCGAAGGTGTTAGGATAGGATAATCAAGAGGTGAGCTAGATTCAGGTAATGACATTAGGTCATTCCTGATCATTGCACAGCAAACCCGATGAGAGTCTTAAACTACATCCTAGGTATACCTGGTGTTCGCACTGGCCTATGAATGAATTGAAATGAAATACGAATGAATGAGTGAAGCAGACTCTGTGTTTGCTAAAGAAGGCTCCCTAGTTGAGGTCCCATATGTTGAGCCCTCATTTTGGAAAGTCTTAAAGTTAAGTCTATGATAATAAGGTCTCATGGTATACGAATGAATAATATGAAAGAAAGTATGTGTTATATGTTATGTGTTATATGAATATGTTATGTTTTGTGTGCTATACGATAATTATAATGATGCATGTCACTCTCATGGCATAACTTTCCCAATCTCAATTTGGCAAGTCCACTGACTTGACTTCCAAAAATCATGTTGTTAGGAAAGAGCTATTCTTCCTCATGCATGTCCCTGGTGTGTACTTGCATATACTCATACTTAGTACAAGTGTGTACTAATTCCATACGAACATCTACTTTTAGGTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</genome_strand>
        <mrna_strand>AATCGTGATCAAGTTATAGAGGGGATGGATTTAGTTGTGATGAACCAG.................................................................................................................................GGCGTAGACGGAAGGATATTTGGTATTTGGTAAAGAAAACTCGGGTTCAAGGGAAGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722459" ref_strand="+" ref_description="SGN-E722459 [FC17BD04]">
      <seq>ggccgaattgacagaaggaagaagtgcttcaacaagacgaagaaacagctgataaaatggggaaattaccaccttccttaaggtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaaaaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcaaatgctaaaacccttttcaattctctgatttccagtaccaaaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagacattgctgtgaggaccctttgctcttccggccacgaagagcaagccattgagctagtgaaagaactttcctccaaagactctccccctgatacatatacttataattttattattaggcatttgtgcaagaacaggcctttgagtaccatgaataactttattaaagaaatgagggaaggttttgatataaaacctgatcttgttacatatacaattatgattgacaatgtttgtaatagtaaaaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="61904" stop="60499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61612" g_stop="60799" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E722459" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61612" e_stop="60799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTA</genome_strand>
        <mrna_strand>GGCCGAATTGACAGAAGGAAGAAGTGCTT-CAACAAGACGAAGAAACAGCTGATAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAAAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAAATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAAAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345502" ref_strand="+" ref_description="SGN-E345502 [cTOF-18-G21]">
      <seq>aaccctaattttgtcctcacagaaggaagaagtggttacaacaagacgaagaaacagctgagaaaatggggaaattaccaccttccttaaggtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcagatgctaaaacccttttcaattctctgatttccagtaccagaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagacattgctgtgaggaccctttgctcttccggccacgaagagcaagccattgagctagtgaaagaactttcctccaaagactctccccctgatacatatacttataattttattattaggcatttgtgcaagaacaggcctttgagtaccatgaataactttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="61920" stop="60585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61620" g_stop="60885" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E345502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61620" e_stop="60885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAA</genome_strand>
        <mrna_strand>AACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312859" ref_strand="+" ref_description="SGN-E312859 [cTOA-8-I24]">
      <seq>tggttacaacaagacgaagaaacagctgagaaaatggggaaattaccaccttccttaaagtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcagatgctaaaacccttttcaattctctgatttccagtaccagaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="61888" stop="60748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61588" g_stop="61048" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E312859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61588" e_stop="61048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACA</genome_strand>
        <mrna_strand>TGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAAGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301487" ref_strand="+" ref_description="SGN-E301487 [cLEW-23-C17]">
      <seq>ctctcatcaaaactccatctccatccccattcccatccccaccttcaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatgtctttcagatgctaaaaccctttacaatgctctgatttacagtaccagaaacccctctacacacggcaaatattatcatgcatttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaacgttcaccctcctttctcccctgaccaggatacataccatgttctcctcggccaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="61806" stop="60841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61506" g_stop="61141" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E301487" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61506" e_stop="61141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTT</genome_strand>
        <mrna_strand>CTCTCATCAAAACTCCATCTCCATCCCCATTCCCATCCCCACCTTCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATGTCTTTCAGATGCTAAAACCCTTTACAATGCTCTGATTTACAGTACCAGAAACCCCTCTACACACGGCAAATATTATCATGCATTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAACGTTCACCCTCCTTTCTCCCCTGACCAGGATACATACCATGTTCTCCTCGGCCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549153" ref_strand="+" ref_description="SGN-E549153 [TUS-67-M16]">
      <seq>ttaatcaccaacataattaatggaggaatagaatgtggaaaaggttctaatccaaaaatggagaatagaattgggttttacaagagatacttggagtcaatcctggggtcaatttggactgtgctaaacaaacgccttttggccagtaaaataaactactacatagtcaaataatgtacttcttccagccatagtgattggtgagaaatatgttatccaaaatatttaagttatataataaaacaaagttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="64803" stop="63939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64503" g_stop="64238" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E549153" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64503" e_stop="64238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTATCAGAGGAAT</genome_strand>
        <mrna_strand>TTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309771" ref_strand="+" ref_description="SGN-E309771 [cLEY-26-L10]">
      <seq>taatcaccaacataattaatggaggaatagaatgtggaaaaggttctaatccaaaaatggagaatagaattgggttttacaagagatacttggagtcaatcctggggtcaatttggactgtgctaaacaaacgccttttggccagtaaaataaactactacatagtcaaataatgtacttcttccagccatagtgattggtgagaaatatgttatccaaaatatttaagttatataataaaacaaagttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="64802" stop="63939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64502" g_stop="64238" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E309771" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64502" e_stop="64238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTATCAGAGGAAT</genome_strand>
        <mrna_strand>TAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300318" ref_strand="+" ref_description="SGN-E300318 [cLEW-17-M2]">
      <seq>caaaattatgttttggggttttgttttgttttgtgtgttgggtacaagaggaggattgacacaagatgttggtgctcttattagtaaagacatatttgagagaatgctattgcatcgtaatgatgccaattgtaatgccaaaggattttacacttatgatgcttttataacagctgcaaggtcctttgctgcttttggaactactggaaacaccaacactcgtaagaaggaaatcgctgcatttttggcacaaacttctcttgaaacaaccggggggtggggaacagctccggatggtccattttcatggggatattgcttcaagcaagaacaaggtagcccaccagattactgtgttgcaaatcaacagtggccttgtgctcctggtaaaaaatactttggtcgaggtcccatccaaatatcctacaactacaactatggaccagcaggaagagccataggagttgatttgttaaacaatccagatgctgttgcaaatgatgcagtcgtttcattcaagacagccttgtggttctggatgacggcccagagaccaaagccatcggcccattttgttattactggtaaatggagaccaacaggagctgatttgtctgctggtcgtgtctctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="66193" stop="64209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65893" g_stop="65622" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65621" i_stop="64948" i_length="674">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64947" g_stop="64794" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="426" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64793" i_stop="64718" i_length="76">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64717" g_stop="64509" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="635" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E300318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65893" e_stop="65622"/>
          <exon e_start="64947" e_stop="64794"/>
          <exon e_start="64717" e_stop="64509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGTCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCGGTACTATTTTCTTAAGTAATTATCCCTAGCTTGTTACAAGAACAAATAAAAGTCATTTTTACACTTTCTTTTGAGATCTTATTGACAACTTTTTAAGCAACCTAACATCCACAACCATGTACACAGGGGTGTCAAATGAGCGGCTTGGGTTGAAATTAGAAATATTTAAATGAGTTCAATAGAAACCGGGTTGAGTCTTGATCCACCCAAATTTATTTGAGCTCAAATGGGCTAAAAAACGGGTTGGGTCTTGACTCGTCCAATTTGACCCGATTAATCTCAATAATTTAACATATTGATATTTAACTTTTATAATCACAATTTTTGAATTTCCGCTCAAGAATTTTTTGTTAAAAAAGTAACAAATTGATAGACAAATCCATTCATATCTTCAATATAGGAACATATCTTAATAAAAAAATTTAAAACGAGTTGAAATTAGAAATTGAGTTGGACTCAATTGAGATATCTTTTCAAATAGGTTAAGCTTGAATAAGTTGATAATCAATCCAATTCAAATTATTTTAACCCAACCATTAAAATTCTGAGCGAGTTAGCTTCACTTTTGACACCCCTAAATTTCTCATGATAAAATTAACGTTATTTCCGAGTATGAAATCAATTGTTAGTAATGTAATACGAGATATAAAAGTATGAATTATGTTGATGATTAGGGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTAGTAAGTTTTGTTTTAATTTTTTCTACTTTCCACACATAATAGTAGGGTCTAAACTCATGAATTTAGTGATATGCAGCAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCT</genome_strand>
        <mrna_strand>CAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGGGTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTA............................................................................CAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213103" ref_strand="+" ref_description="SGN-E213103 [cLEC-72-P14]">
      <seq>attgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttcccctttgtttacgtagttcttgcatttacaatttgcactagtatatgagggaagcaattttaataattcaagtggctacagggagtgtatttagagggttaaaagtgtattctttctactgacttttagtagtagttgcacaaaaggcagtgaacttttgagtaaaaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75531" stop="74218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75337" g_stop="75329" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75225" g_stop="74518" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="716" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E213103" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75337" e_stop="75329"/>
          <exon e_start="75225" e_stop="74518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGTAAAAAATAAAT</genome_strand>
        <mrna_strand>ATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGT-AAAAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689491" ref_strand="+" ref_description="SGN-E689491 [LH_Ea01A17]">
      <seq>cacgtttcatagctgcagccaattcatttccaggttttggtacaactggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattatctcatcgatattttaattttccctttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76102" stop="74381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75808" g_stop="75694" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="223" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74680" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="780" r_length="557" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E689491" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75808" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTAC</genome_strand>
        <mrna_strand>CACG-TTTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACAACTGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATTATCTCATCGATATTTTAATTTTCCCTTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744952" ref_strand="+" ref_description="SGN-E744952 [GI|19186]">
      <seq>gtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttcccctttgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76268" stop="74381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75968" g_stop="75694" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="384" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74681" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="929" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E744952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75968" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTA</genome_strand>
        <mrna_strand>GTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729903" ref_strand="+" ref_description="SGN-E729903 [LA22BH01]">
      <seq>gaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacnaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataaaggattttggatgccccatttggaatatgtagttttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatccatattttattttcccttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76300" stop="74381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76000" g_stop="75694" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="416" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74686" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="958" r_length="542" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="962" polyA_stop="972"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E729903" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76000" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAG-TTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTT</genome_strand>
        <mrna_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACNACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAAGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCCATATTTTATTTTCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215018" ref_strand="+" ref_description="SGN-E215018 [cLEC-78-I9]">
      <seq>ttacgttatatacactacaataagtgaagtatttggttctaattttgcaggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75787" stop="74390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75487" g_stop="75329" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75225" g_stop="74690" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="695" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E215018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75487" e_stop="75329"/>
          <exon e_start="75225" e_stop="74690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCC</genome_strand>
        <mrna_strand>TTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355060" ref_strand="+" ref_description="SGN-E355060 [cTOS-18-K13]">
      <seq>aggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76076" stop="74402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75776" g_stop="75694" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="192" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74694" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="724" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E355060" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75776" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATT</genome_strand>
        <mrna_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691062" ref_strand="+" ref_description="SGN-E691062 [LH_Ea05C04]">
      <seq>cgttatgacttagctgggcaagcaattggacaagacttagctaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattatctcatcgatattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75515" stop="74396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75218" g_stop="74697" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="546"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E691062" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75218" e_stop="74697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTA</genome_strand>
        <mrna_strand>CGTTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGCTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATTATCTCATCGATATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691061" ref_strand="+" ref_description="SGN-E691061 [LH_Ea05C03]">
      <seq>tctatgacttagctgggcaagcaattggacaagacttacttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattatctcatcgatattttccaaaaggacatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75516" stop="74398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75217" g_stop="74697" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E691061" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75217" e_stop="74697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTA</genome_strand>
        <mrna_strand>TCTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTACTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATTATCTCATCGATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694902" ref_strand="+" ref_description="SGN-E694902 [LH_Ea05C04](-)">
      <seq>ttatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcatctgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggttacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgatacaaccagaggaactttgatgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtggaacacaaataagagtttctttatcttataatatataaacggacatgtactattatctcatcgatatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75515" stop="74396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75216" g_stop="74697" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="548"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E694902" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75216" e_stop="74697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGT-CTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTA</genome_strand>
        <mrna_strand>TTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCATCTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGTTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGATACAACCAGAGGAACTTTGATGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTGGAACACAAATAAGAGTTTC-TTTATCTTATAATATATAAACGGACATGTACTATTATCTCATCGATATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218190" ref_strand="+" ref_description="SGN-E218190 [cLEL-23-B3](-)">
      <seq>caataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75399" stop="74402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75099" g_stop="74705" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="420"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E218190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75099" e_stop="74705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</genome_strand>
        <mrna_strand>CAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217834" ref_strand="+" ref_description="SGN-E217834 [cLEL-23-B3](-)">
      <seq>gccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccccaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccctttggaatatgtagtttcttattttgtctacccaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75347" stop="74402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75047" g_stop="74705" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="368"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E217834" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75047" e_stop="74705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</genome_strand>
        <mrna_strand>GCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCCCAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCCTTTGGAATATGTAGTTTCTTATTTTGTCTACCCAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732134" ref_strand="+" ref_description="SGN-E732134 [LB01BE03]">
      <seq>agaacagagagacgctaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76297" stop="74413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75997" g_stop="75730" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75729" i_stop="75050" i_length="680">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75049" g_stop="74714" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="604" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="617"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E732134" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75997" e_stop="75730"/>
          <exon e_start="75049" e_stop="74714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>AGAACAGAGAGACGCTAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694643" ref_strand="+" ref_description="SGN-E694643 [LH_Ea04H09](-)">
      <seq>aaaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgccctgccaagggcttctacacttatgatgccttcatagctgcagccaattcatttccaggttttggtacaactggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagttaatgtatcttataatatattataccacatgtactattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76278" stop="74413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75977" g_stop="75694" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="393" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74714" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="916" r_length="523" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="917" polyA_stop="929"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E694643" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75977" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>AAAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGCCCTGCCAAGGGCTTCTACACTTATGATGCCTTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACAACTGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAG-TTAATGTATCTTATAATATATTATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692055" ref_strand="+" ref_description="SGN-E692055 [LH_Ea07L13]">
      <seq>tgatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75414" stop="74413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75115" g_stop="74714" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="423"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E692055" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75115" e_stop="74714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>TGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214189" ref_strand="+" ref_description="SGN-E214189 [cLEC-77-K7]">
      <seq>attggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75494" stop="74415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75194" g_stop="74715" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E214189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75194" e_stop="74715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTAT</genome_strand>
        <mrna_strand>ATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689769" ref_strand="+" ref_description="SGN-E689769 [LH_Ea01M07]">
      <seq>tggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76037" stop="74423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75738" g_stop="75694" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="154" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74716" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="675" r_length="521" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E689769" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75738" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTA</genome_strand>
        <mrna_strand>TGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695895" ref_strand="+" ref_description="SGN-E695895 [LH_Ea07L13](-)">
      <seq>ggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttcattagtcttataatatattataccacatgtactataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75415" stop="74413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75115" g_stop="74717" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="429"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E695895" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75115" e_stop="74717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACT</genome_strand>
        <mrna_strand>GGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTCATTAGTCTTATAATATATTATACCACATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732244" ref_strand="+" ref_description="SGN-E732244 [LB01CF05]">
      <seq>aaataacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgangcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttgggatgccatttggaatatgtagtttcttattttgtctacacaaaataagagtttcttttatcttaatacataatataccacattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76299" stop="74419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75999" g_stop="75694" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="415" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74722" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="920" r_length="505" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="924" polyA_stop="943"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E732244" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75999" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTT-GGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACAC-AAATAAGAGTTTCTTTTATCTTATAACATAATATACCACAT</genome_strand>
        <mrna_strand>AAATAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGANGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGGATG-CCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAAATAAGAGTTTCTTTTATCTTAATACATAATATACCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539942" ref_strand="+" ref_description="SGN-E539942 [TUS-59-P11](-)">
      <seq>aatgggaagtggatttttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="75673" stop="74453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75373" g_stop="75329" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75225" g_stop="74753" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="519" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E539942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75373" e_stop="75329"/>
          <exon e_start="75225" e_stop="74753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAAGTGGA-TTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGT</genome_strand>
        <mrna_strand>AATGGGAAGTGGATTTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349235" ref_strand="+" ref_description="SGN-E349235 [cTOS-2-F5]">
      <seq>aggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagangaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccattttgaatatgtagtttcttattttgtctacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76076" stop="74461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75776" g_stop="75694" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="192" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74761" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="657" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E349235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75776" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAA</genome_strand>
        <mrna_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGANGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTTGAATATGTAGTTTCTTATTTTGTCTACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718380" ref_strand="+" ref_description="SGN-E718380 [FC04CA03]">
      <seq>aatcggccgaattaaacactatctaatgcataagaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcaaaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76323" stop="74494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76021" g_stop="75694" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="340" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="449" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74794" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="881" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E718380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76021" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATT</genome_strand>
        <mrna_strand>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAAAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690803" ref_strand="+" ref_description="SGN-E690803 [LH_Ea04H09]">
      <seq>tagaacagagagaaacaaaaaaaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgccctgccaagggcttctacacttatgatgccttcatagctgcagccaattcatttccaggttttggtacaactggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctancaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76297" stop="74493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75998" g_stop="75694" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="413" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74810" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="827" r_length="414" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E690803" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75998" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGG</genome_strand>
        <mrna_strand>TAGAACAGAGAGAAACAAAAAA-AAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGCCCTGCCAAGGGCTTCTACACTTATGATGCCTTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACAACTGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTANCACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAAT--ATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710887" ref_strand="+" ref_description="SGN-E710887 [FA57BA07]">
      <seq>caataacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76298" stop="74514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75999" g_stop="75694" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="415" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74814" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="827" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E710887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75999" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATA</genome_strand>
        <mrna_strand>CAATAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706504" ref_strand="+" ref_description="SGN-E706504 [FA30AF02]">
      <seq>gaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctaccaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76300" stop="74518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76000" g_stop="75694" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="416" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74818" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="824" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E706504" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76000" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATG</genome_strand>
        <mrna_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACCACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710939" ref_strand="+" ref_description="SGN-E710939 [FA57BH02]">
      <seq>cccataacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatccaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaccggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacaatactgaatgttgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76297" stop="74599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76000" g_stop="75694" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="416" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74899" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="743" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E710939" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76000" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCC</genome_strand>
        <mrna_strand>CCCATAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCCAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTACCGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACAATACTGAATGTTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298953" ref_strand="+" ref_description="SGN-E298953 [cLET-42-E22]">
      <seq>agagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaagttggacaaagacttagttaacagaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76292" stop="74758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75992" g_stop="75694" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="408" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="75058" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="579" r_length="171" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E298953" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75992" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="75058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAA-TTGGAC-AAGACTTAGTTAACA-ACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGAC</genome_strand>
        <mrna_strand>AGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAAGTTGGACAAAGACTTAGTTAACAGACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537378" ref_strand="+" ref_description="SGN-E537378 [letfr27]">
      <seq>gagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76289" stop="75097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75989" g_stop="75694" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75397" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="337" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E537378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75989" e_stop="75694"/>
          <exon e_start="75437" e_stop="75397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATAT</genome_strand>
        <mrna_strand>GAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397237" ref_strand="+" ref_description="SGN-E397237 [TUS-45-G3](-)">
      <seq>caattgacacaccaatttaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatctattgttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79130" stop="77965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78893" g_stop="78883" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78821" g_stop="78255" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="578" r_length="567" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E397237" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78893" e_stop="78883"/>
          <exon e_start="78821" e_stop="78255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTTGAA</genome_strand>
        <mrna_strand>CAATTGACACA.............................................................CCAATTTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTATTGTTATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391351" ref_strand="+" ref_description="SGN-E391351 [TUS-47-J16](-)">
      <seq>aaactaatggtggtagtgcagggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79280" stop="77965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79061" g_stop="79053" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="107" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78256" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="673" r_length="566" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E391351" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79061" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCA-GGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTTGA</genome_strand>
        <mrna_strand>AAACTAATG.........................................................................GTGGTAGTGCAGGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390129" ref_strand="+" ref_description="SGN-E390129 [TUS-17-M19](-)">
      <seq>tgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79489" stop="77965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79189" g_stop="79053" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="234" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78258" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="798" r_length="564" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E390129" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79189" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTT</genome_strand>
        <mrna_strand>TGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390881" ref_strand="+" ref_description="SGN-E390881 [TUS-47-M20](-)">
      <seq>gaacgagcgggacaaaggtatgggtgttggacaagagttagtgaacaaccctgattttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79108" stop="77965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78808" g_stop="78258" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E390881" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78808" e_stop="78258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAGCTGGAC-AAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGA-TTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTT</genome_strand>
        <mrna_strand>GAACGAGCGGGACAAAGGTATGGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288914" ref_strand="+" ref_description="SGN-E288914 [cLES-17-I13]">
      <seq>aatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79016" stop="77960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78716" g_stop="78260" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E288914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78716" e_stop="78260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATG</genome_strand>
        <mrna_strand>AATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373444" ref_strand="+" ref_description="SGN-E373444 [TUS-31-J16](-)">
      <seq>gcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79386" stop="77974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79086" g_stop="79053" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="131" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78265" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="688" r_length="557" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E373444" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79086" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAA</genome_strand>
        <mrna_strand>GCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292052" ref_strand="+" ref_description="SGN-E292052 [cLET-1-A5](-)">
      <seq>agatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79043" stop="77974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78743" g_stop="78265" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E292052" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78743" e_stop="78265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAA</genome_strand>
        <mrna_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744951" ref_strand="+" ref_description="SGN-E744951 [GI|19188]">
      <seq>ggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccaaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79641" stop="77967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79341" g_stop="79053" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="386" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78267" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="941" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E744951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79341" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATA</genome_strand>
        <mrna_strand>GGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCAAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359301" ref_strand="-" ref_description="SGN-E359301 [cLHT-31-I14]">
      <seq>agatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatccccagcagatacggcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtggacttgaatgtaatatgggtccaaatactgcagtggaaagtcgaattggattttacaggaggtattgtggtatgctgaatgttcccactggtgaaaatttggactgtaacaatcaaaagaactttgcccagggctaagcgtctttatatatatagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagttgattttcagaaatactaaagttatatgattttgaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79043" stop="77979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78743" g_stop="78280" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="479"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E359301" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78743" e_stop="78280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTG</genome_strand>
        <mrna_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCAGCAGATACGGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTGGACTTGAATGTAATATGGGTCCAAATACTGCAGTGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGCTGAATGTTCCCACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTTGCCCAGGGCTAAGCGTCTTTA--TATATAT----AGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTGATTTTCAGAAATACTAAAGTTATATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203699" ref_strand="+" ref_description="SGN-E203699 [cLEC-15-F14]">
      <seq>caccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79124" stop="77982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78884" g_stop="78883" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78821" g_stop="78282" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="542" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="553"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E203699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78884" e_stop="78883"/>
          <exon e_start="78821" e_stop="78282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTT</genome_strand>
        <mrna_strand>CA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285209" ref_strand="+" ref_description="SGN-E285209 [cLER-20-L21]">
      <seq>tgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttaaaaaaatggaaagttattttcagaaatactaaagttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79272" stop="77985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78972" g_stop="78883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78821" g_stop="78286" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="626" r_length="536" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="637"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E285209" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78972" e_stop="78883"/>
          <exon e_start="78821" e_stop="78286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATG</genome_strand>
        <mrna_strand>TGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAAAAAAATGGAAAGTTATTTTCAGAAATACTAAAGTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281913" ref_strand="+" ref_description="SGN-E281913 [cLES-2-B6]">
      <seq>gccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="78947" stop="77985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78647" g_stop="78286" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="373"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E281913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78647" e_stop="78286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATG</genome_strand>
        <mrna_strand>GCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210977" ref_strand="+" ref_description="SGN-E210977 [cLEC-69-D14]">
      <seq>aacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaaaaaaaaaaaaaaaaaaaaactcgagactagttctccggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79266" stop="77994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78966" g_stop="78883" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78821" g_stop="78302" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="604" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="625"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E210977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78966" e_stop="78883"/>
          <exon e_start="78821" e_stop="78302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAA</genome_strand>
        <mrna_strand>AACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719348" ref_strand="+" ref_description="SGN-E719348 [FC07CC11]">
      <seq>gaactgaaaaagccacagtaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataatttatatttggatgtaatcaataaggggattctgtatgcccatttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79657" stop="78022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79358" g_stop="79053" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78323" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="902" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E719348" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79358" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGAAAAAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAA</genome_strand>
        <mrna_strand>GAACTGAAAAAGCCACAGTAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAATTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331909" ref_strand="+" ref_description="SGN-E331909 [cTOD-16-E7]">
      <seq>tgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79634" stop="78160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79334" g_stop="79053" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="379" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78460" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="741" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E331909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79334" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAA</genome_strand>
        <mrna_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390130" ref_strand="+" ref_description="SGN-E390130 [TUS-17-M19]">
      <seq>atgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaaatgtcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79635" stop="78189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79335" g_stop="79053" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78489" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="713" r_length="333" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E390130" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79335" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTAC</genome_strand>
        <mrna_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAAATGTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373445" ref_strand="+" ref_description="SGN-E373445 [TUS-31-J16]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaattttgaatgtgggatgggtccgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78549" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="658" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E373445" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAA-TTTGAATGTGGGATGGGTCCGAATAC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTTGAATGTGGGATGGGTCCGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390283" ref_strand="+" ref_description="SGN-E390283 [TUS-40-M19]">
      <seq>atgaaattcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaagtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaagaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagacacacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttaatgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagtttcagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79635" stop="78254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79335" g_stop="79053" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78554" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="648" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E390283" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79335" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCG</genome_strand>
        <mrna_strand>ATGAAATTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAAGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAAGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGACACACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAATGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTTCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293958" ref_strand="+" ref_description="SGN-E293958 [cLET-13-D9]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacnaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78557" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="650" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E293958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACNAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286871" ref_strand="+" ref_description="SGN-E286871 [cLES-14-D22]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78557" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="650" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E286871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292007" ref_strand="+" ref_description="SGN-E292007 [cLET-7-H5]">
      <seq>atgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79635" stop="78260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79335" g_stop="79053" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78560" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="642" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E292007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79335" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATG</genome_strand>
        <mrna_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290780" ref_strand="+" ref_description="SGN-E290780 [cLET-10-E15]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78561" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="645" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E290780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGAT</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397151" ref_strand="+" ref_description="SGN-E397151 [TUS-45-G3]">
      <seq>aatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaaaatcattaacggtccaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79636" stop="78269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79336" g_stop="79053" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="381" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78570" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="634" r_length="253" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E397151" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79336" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGT-CAATTTGA</genome_strand>
        <mrna_strand>AATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAAAATCATTAACGGTCCAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390647" ref_strand="+" ref_description="SGN-E390647 [TUS-47-M20]">
      <seq>atgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggaaaatggacgccatcccctaaaaatacagcaactaataaaattccagggtacggtgtcattaccacattcattaacggtcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79635" stop="78272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79335" g_stop="79053" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78572" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="630" r_length="250" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E390647" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79335" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTT</genome_strand>
        <mrna_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGAAAATGGACGCCATCCCCTAAAAATACAGCAACTAATAAAATTCCAGGGTACGGTGTCATTACCACATTCATTAACGGTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293991" ref_strand="+" ref_description="SGN-E293991 [cLET-13-P9]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgactctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtactgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccagtctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78577" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="629" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E293991" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGACTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTACTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAGTCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286948" ref_strand="+" ref_description="SGN-E286948 [cLES-6-M1]">
      <seq>tgaagtttaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggccaaacatctcacgaaactaatggtggtagagcaggaacattcactggaagatattgctttgttaagcaaatatagcactcagacagatactatggcataggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcagtatgggtctggatgacagaacaggataataaaccatcatgccgcaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79634" stop="78292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79334" g_stop="79053" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="379" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="609" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E286948" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79334" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCA</genome_strand>
        <mrna_strand>TGAAGTTTAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGCCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGAGCAGGAACATTCACTGGAAGATATTGCTTTGTTAAGCAAATATAGCACTCAGACAGATACTATGGCATAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAGTATGGGTCTGGATGACAGAACAGGATAATAAACCATCATGCCGCAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289391" ref_strand="+" ref_description="SGN-E289391 [cLET-3-G9]">
      <seq>aacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79506" stop="78324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79206" g_stop="79053" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="251" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78624" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="449" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E289391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79206" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGC</genome_strand>
        <mrna_strand>AACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203974" ref_strand="+" ref_description="SGN-E203974 [cLEC-22-G18]">
      <seq>tcaatattgtatcacccgttgggctgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79628" stop="78325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79328" g_stop="79053" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="373" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78625" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="570" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E203974" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79328" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAG</genome_strand>
        <mrna_strand>TCAATATTGTATCACCCGTTGGGCTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365494" ref_strand="+" ref_description="SGN-E365494 [cLPT-2-D10]">
      <seq>ccagaggaaaaatgaagttcaatattgtatcaccagttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccagcttttggtactactggtgatgatactgcccgtaagaaggaaattgctgcctttttcggtcaaacatctcatgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaggcaaatagatcagtcagatagatactatggcagaggacctatccaattgacacaccaatctaactatgaacgagctggacaaggtattggtgttggacaagacttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79646" stop="78338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79346" g_stop="79053" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="391" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78636" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="577" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E365494" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79346" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAA</genome_strand>
        <mrna_strand>CCAGAGGAAAAATGAAGTTCAATATTGTATCACCAGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGCTTTTGGTACTACTGGTGATGATACTGCCCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCATGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCAGATAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTATGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGACTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294352" ref_strand="-" ref_description="SGN-E294352 [cLET-14-N20](-)">
      <seq>gaaaaatgaagttcaatattgtatcacccgatgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgagaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttgctactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaacggtggtagtgcaggaacattcactggaagatattgctttgttaagcaaatagagcactctgacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacggtatcattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78654" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="553" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E294352" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294352" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGATGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGAGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGCTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAACG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAAGATATTGCTTTGTTAAGCAAATAGAGCACTCTGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGGTATCATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294351" ref_strand="+" ref_description="SGN-E294351 [cLET-14-N20]">
      <seq>gaaaaatgaagttcaatattgtatcacccgatgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgagaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttgctactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaacggtggtagtgcaggaacattcactggaagatattgctttgttaagcaaatagagcactctgacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacggtatcattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78654" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="553" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E294351" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGATGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGAGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGCTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAACG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAAGATATTGCTTTGTTAAGCAAATAGAGCACTCTGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGGTATCATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292875" ref_strand="+" ref_description="SGN-E292875 [cLET-11-D17]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78680" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="527" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E292875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297238" ref_strand="+" ref_description="SGN-E297238 [cLET-29-E11]">
      <seq>agaggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79644" stop="78394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79344" g_stop="79053" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78694" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="517" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E297238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79344" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAAC</genome_strand>
        <mrna_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293303" ref_strand="+" ref_description="SGN-E293303 [cLET-18-H17]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78699" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="508" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E293303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298472" ref_strand="+" ref_description="SGN-E298472 [cLET-41-M5]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcaaaagacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78699" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="507" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E298472" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAAAAGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335934" ref_strand="+" ref_description="SGN-E335934 [cTOE-6-M13]">
      <seq>gaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79633" stop="78417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79333" g_stop="79053" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78717" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="483" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E335934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79333" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGC</genome_strand>
        <mrna_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391165" ref_strand="+" ref_description="SGN-E391165 [TUS-47-J16]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggagaagagttagtgaacaaccctgatttatttgcgacagatcctataatatcattcaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="79053" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78719" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="488" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E391165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAGAAGAGTTAGTGAACAACCCTGATTTATTTGCGACAGATCCTATAATATCATTCAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292051" ref_strand="+" ref_description="SGN-E292051 [cLET-1-A5]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78732" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="474" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E292051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAAT</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290011" ref_strand="+" ref_description="SGN-E290011 [cLET-5-E5]">
      <seq>agaggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79644" stop="78477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79344" g_stop="79053" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78777" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="434" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E290011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79344" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACA</genome_strand>
        <mrna_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292949" ref_strand="+" ref_description="SGN-E292949 [cLET-11-N20]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78778" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="428" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E292949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201230" ref_strand="+" ref_description="SGN-E201230 [cLEC-10-E12]">
      <seq>aaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtaatttggatcatccttcttagcattgtaatttataggtaacaattgaattatatcattcgctcttttgcaggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacagtaagacaattcaatagaatatcaacatttggaatcattagtaatattcttttttatgcagccaatctaactacgaacgagctggacaaggtattggtgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79638" stop="78478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79338" g_stop="78778" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E201230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79338" e_stop="78778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</genome_strand>
        <mrna_strand>AAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296408" ref_strand="+" ref_description="SGN-E296408 [cLET-19-H6]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79639" stop="78751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79339" g_stop="79053" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78968" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="299" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E296408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79339" e_stop="79053"/>
          <exon e_start="78979" e_stop="78968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAG</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299332" ref_strand="+" ref_description="SGN-E299332 [cLET-43-J8]">
      <seq>gaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttacaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttctgtcaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79633" stop="78768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79333" g_stop="79068" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E299332" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79333" e_stop="79068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACAT</genome_strand>
        <mrna_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTACAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCTGTCAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338705" ref_strand="+" ref_description="SGN-E338705 [cTOE-21-E11]">
      <seq>ccgttgcactgtcttgtctgtttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79613" stop="78849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79313" g_stop="79149" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E338705" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79313" e_stop="79149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAG</genome_strand>
        <mrna_strand>CCGTTGCACTGTCTTGTCTGTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212743" ref_strand="+" ref_description="SGN-E212743 [cLEC-73-B22]">
      <seq>gattggtagtttgccctgcaaaccacgtaccattgacacctctaagttttttggaacgtgctgcatttgtttaccgcaaaaacatagccttaatttatggaaacataagttattcatgggaagaattacatggaagatgtatcaaccttgcatctgctctttctcaacttggagtttcatctggtgatgttgtggcaacggtggcacctaatgtagcagcacaatatgagctacattttggtgtaccaatggctggtgcagtcctttctgcactcaacacaatgctagatgccaccacattggctcaaaaactccaacaattggaggccaaaatcatttttgtatactctgatttcattgaactagtgcttcaagcacttgccattcttcaagaaaaagacaaatcttgtctaattgtcttaatccatgaaggaaacaatgtaacaaaaccaccagtgtcatcatcagggccatcaaaaattctggattaccaaacacttcttgaaatggggcagcctaatttcaagattatgcatccgaaaaatgaatttgatccgatttcgatcaattttacttctggatcaacagggaagcctaaaggggctgtgtatagccatagagctgcttatttgaatacaattgctgacatttttcgatacgaaatgggaaaaagccctgtttttctctggacagtggatatgtttcgatgcaacgggtggtgtctcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="84112" stop="88028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84412" g_stop="84602" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84603" i_stop="87190" i_length="2588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87191" g_stop="87728" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="729" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E212743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84412" e_stop="84602"/>
          <exon e_start="87191" e_stop="87728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTTGTAAGTCTAATTTCATCCTTTCACTTGCTCCTCCATCTTCAATATATATTTGTGTACTACACAAACATATTTATTCTGCTCATGCTTCAGACAATCTGAATAATTCTATATACACATATATAGGTGCGCCATTTATATAGCCGAGAGTAGTTGCACTTGATTTATCTCCATTCAAGATCTATGTTTTTTTTATTTTCTTTAAACTCTTTCGTAACATAAATATGATTAAGAACTCCCTGACGTGAAAATAATATTTTACACGTATAAACTAGACTAGAATTAGATCTAGTTCTTTGGACTTTAAATATACTATGATTTTGATCCTTTTAATTTCATGCATGCCAATTATTTTCTTTTAAGGCAAAAGTTAATTAGTAGAAGTGAGCCATTAGAGACTTGATATATTAACCAAGTCAACAGGCGCATTCATTCACCCAAATTAATTGATGCGTTGAAGAAGGGTTATTAATTATCATTTTTTTTTACGTTTACATTTACACTTATAATAAAAAGAAGAATCGACAACAAACTTTAATTCCTCCACTTAATTCTTAGTTGATAAAAGCATAATAATTATGTCCCTTGCGAAGATAGACTTGACTTACGTATATGGTTCTACTTCTCTCATATTTATTATCTCACGCATTGACTTGACCAGCTAGATGTTAAAGAATGAAAAAATTCATATCGATAATTAAAGAAATGAATGGTTAGATTTAAATAATTCTCTTATTTGAGATAGTTTTTAGGGTATGACTTACACCTAGCTGTTAGAACCAAATTTTAAAGTTGTCCACGCTTAAAATGTTCAAAAACCTGAGCTTGAGGTGGATGTTAAAGAATGAAAATTTTTTCATCGATGATTAATGAGATGAATAATCTTCTTATAAATCTAAGACAATTCTTTATCCTTTAAATTAATGTTTAGAGCATGATAAGTCCAAGATCTAATTTTACACTAACTACTTTATTAGTAAGTCATTGTATAAGATTATAGGAATATATGTTGAGGGGTCTTTTTCCATTAACAAACCATTTCTTGTCTTCTTACTACATATTCGAAACCATTTTGAGTGCTCATACTTGTAATAGTAACGACAAAACAGCCCCCTCGAGTTTCATTGCTCTTATATTTCCTTTGGCTTTCTCTCTATAAAACTCTGGAAAAACGTTCATAACTTGCGTAATGGTGTCAAAATTAGGGGCTGAATGAGGACAAATTCACAATGTCACGTAAAAACGATTAGTTAATTATAAGTCATGTAATATAGTAATGTAATTAGATGAAAATTTGTGTTGTCTTAACTCACATACTAAATATGTAATGAACACATAGATTATATATACTATATATTATAATATATACTAAGTACTAACAATATATATATATATATATTTATATATAAATTACTATTTCATGCTTTAAAAACGATAAAAATAGGAGCAATCATGTGTAACGGTGTGAATACACGTTTTGACTTCTTTTTTTCTTGTTTGAGTGCTTTATTATTTTTAAGAAAAAAGTTTCTATTTTCATTCTTTTTTATTTAACAAATGAGCTAGACCACAAGTCTTCGTCTCAAATTGTAATTAAATACGTGTCACATCAAATTTAATATTTTAGAGCAGAGCATATATGCACATGATGATACACCTTGAAGGGGGAATTTAATTCTTTTCTTATATTAGTGTTATATTATAATCAAAACTCCTTAGTACTTGTATCTTTTTTTCCCTCATTCTGCATGAGCCTGTCCTGGCTGTGATTTAAAATTGTACAATTTATTGACTTTGTCACGTTTAGCAATGTGTTAAAGACCCACGTTATGAAAAATAAATAAATTGATGACTAGGTACAATTGATATGCGTAATTACGACCAGAGGAAAACATCTAGATACATGGAACTTGCTCAATAGTACTAAATAAGTCAATGGACTTAAATATTGTTTGGAAGCTCTCTCGAAATCATATTATTTAATTTAGTTTGACATAAATATTGAATATACATAGATAGTTTGTTATGTCTCTCGTATAACAATGTTGGGGATGGAATATGGATGCACAATTAAAATTACGGTGTAACCTAATAGTTTTAGCTCTTTCTTATATACATGTTCAAATTCTAGTTAGTATTAAATTCGAACAGATAATACTCATATGTTCATTATTATTTTATCTAGTTAATATTAACAAATCAAGAAAGAGTTATTATTTACTTTTAATATCACTTTTCATCGAAAATCTTAGTAGCTCAATTGATTGGCTACTTGAACTCTCAGCTTGTTGATAAAAATTTGATTCTCCATATAGTAATCTACTCCCCATTTCTTTTTCCCCTTCCCCTTCCCCTGCCTTCAATTTTCCTTTTTTTTTCTTCTAAAAAGATAATATATATCACTCTTCATTGAATAATACAAGTTCTTAGATTATATTGTGAATCCATAAACTTCAAATTCTAGTTGTTACGCTGAGTCCAAACCTTCTTTCGTTTTTCTCTTTGCTCTTATTTGTAGCTTATATTGTCATACGTAACTAATTAAAACAAGCTTAATTTATGCGCTTATTAATCTTAACTAATACAAACAGGTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCT</genome_strand>
        <mrna_strand>GATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349178" ref_strand="+" ref_description="SGN-E349178 [cTOS-2-C6]">
      <seq>gaaggatcgcgctgttgacgtagtcaaaactgatgggaaaactataagcacacttgaaattgaaggtgttttgattaggcatcctatggttttggaagttgcagttgtagcaagatgtgatgatgttcttggagagaccccttgtgcttttgtgaaactgaaaaaagggtgttttatgactgatgaagaaattatcaagttttgtgaagattggctgcaggattacatggttcctaaggcagtaatctttggtgatttaccattcaattcttcagggaaaatacagaaatttatacttagggacaaggtcaacaatgcaatgaagttgtgtctacaagttgggtgcaactcagttggcgagctgcccacaccttcatcctagtggtggggattcgaatttcgatatattccctccccaccataaaaaaaaaaaaaacattgaaatatgcatgccttaataaaaattgtcctttttcagtcttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="88009" stop="89099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88309" g_stop="88803" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E349178" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88309" e_stop="88803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAACATTGC</genome_strand>
        <mrna_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356228" ref_strand="+" ref_description="SGN-E356228 [cTOS-20-B2]">
      <seq>gaaggatcgcgctgttgacgtagtcaaaactgatgggaaaactataagcacacttgaaattgaaggtgttttgattaggcatcctatggttttggaagttgcagttgtagcaagatgtgatgatgttcttggagagaccccttgtgcttttgtgaaactgaaaaaagggtgttttatgactgatgaagaaattatcaagttttgtgaagattggctgcaggattacatggttcctaaggcagtaatctttggtgatttaccattcaattcttcagggaaaatacagaaatttatacttagggacaaggtcaacaatgcaatgaagttgtgtctacaagttgggtgcaactcagttggcgagctgcccacaccttcatcctagtggtggggattcgaatttcgatatattccctccccaccataaaaaaaaaaaaaacattgaaatatgcatgccttaataaaaattgtcctttttcagtcttgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="88009" stop="89099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88309" g_stop="88801" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E356228" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88309" e_stop="88801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAACATT</genome_strand>
        <mrna_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272329" ref_strand="+" ref_description="SGN-E272329 [cLEM-19-J22]">
      <seq>aaattttatttttttgttatgataagaatggaaacaaagaggaatacgagtcaacacataccttcttctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctangacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95382" stop="96525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95682" g_stop="96225" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E272329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95682" e_stop="96225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCAC</genome_strand>
        <mrna_strand>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTANGACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341479" ref_strand="+" ref_description="SGN-E341479 [cTOE-23-D17]">
      <seq>gaatacgagtcaacacatttcttcttctgggctgactatttgttattatgtgaaatgcccatccttcatctgctcttctattcacactaaccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctattcttatttcactaataatacccgttattctaggtacgggtttctatcaactcgattccttcgacccgggttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95423" stop="96357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95723" g_stop="96057" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E341479" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95723" e_stop="96057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTA</genome_strand>
        <mrna_strand>GAATACGAGTCAACACATTTCTTCTTCTGGGCTGACTATTTGTTATTATGTGAAATGCCCATCCTTCATCTGCTCTTCTATTCACACTAACCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTCTTATTTCACTAATAATACCCGTTATTCTAGGTACGGGTTTCTATCAACTCGATTCCTTCGACCCGGGTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331116" ref_strand="+" ref_description="SGN-E331116 [cTOD-6-H5]">
      <seq>ctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagtgtgacagggattattactcaacgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95449" stop="97878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95749" g_stop="96255" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97550" i_length="1295">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97551" g_stop="97578" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="535" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E331116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95749" e_stop="96255"/>
          <exon e_start="97551" e_stop="97578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTAC</genome_strand>
        <mrna_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGACAGGGATTATTACTCAACGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331075" ref_strand="+" ref_description="SGN-E331075 [cTOD-6-I2]">
      <seq>ctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95449" stop="96488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95749" g_stop="96188" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E331075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95749" e_stop="96188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCAC</genome_strand>
        <mrna_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723548" ref_strand="+" ref_description="SGN-E723548 [FC20DD06]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcaaaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95508" stop="98165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95808" g_stop="96255" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="493" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97865" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="800" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E723548" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95808" e_stop="96255"/>
          <exon e_start="97559" e_stop="97865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTC</genome_strand>
        <mrna_strand>ACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAAAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302320" ref_strand="+" ref_description="SGN-E302320 [cLEW-19-J22]">
      <seq>gttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95623" stop="98128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95923" g_stop="96255" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97828" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="603" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E302320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95923" e_stop="96255"/>
          <exon e_start="97559" e_stop="97828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTC</genome_strand>
        <mrna_strand>GTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203473" ref_strand="+" ref_description="SGN-E203473 [cLEC-15-D13]">
      <seq>tttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95625" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95925" g_stop="96255" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97584" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="357" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E203473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95925" e_stop="96255"/>
          <exon e_start="97559" e_stop="97584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGA</genome_strand>
        <mrna_strand>TTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270291" ref_strand="+" ref_description="SGN-E270291 [cLEM-1-F17]">
      <seq>ttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95696" stop="98282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95996" g_stop="96255" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97869" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="571" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97946" g_stop="97982" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="608" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E270291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95996" e_stop="96255"/>
          <exon e_start="97559" e_stop="97869"/>
          <exon e_start="97946" e_stop="97982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAA</genome_strand>
        <mrna_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270448" ref_strand="+" ref_description="SGN-E270448 [cLEM-1-F19]">
      <seq>ttgcaccaaagcgcaataaccaggtgctccggggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgagtcggcggcggattacacggtggaggattgggttatcaccggtggcagacctctcgggcttgctctaggacatcgcggcgaatgtatcgctgcagattcagaaaagggattattactcaaggttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtaaacattgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgataacttatgatccatcagactaaacagactaaaacgctactgatcaagctgcattttgctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95696" stop="98117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95996" g_stop="96255" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97817" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="520" r_length="260" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E270448" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95996" e_stop="96255"/>
          <exon e_start="97559" e_stop="97817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCA-ACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATG</genome_strand>
        <mrna_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGGGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAGTCGGCGGCGGATTACACGGTGGAGGATTGGGTTATCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCGCGGCGAATGTATCGCTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAAGGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAAACATTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGATAACTTATGATCCATCAGACTAAACAGACTAAAACGCTACTGATCAAGCTGCATTTTGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213450" ref_strand="+" ref_description="SGN-E213450 [cLEC-71-J5]">
      <seq>agcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtctacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaagaaactgaaagcctgaaattgaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95760" stop="97936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96060" g_stop="96255" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97636" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="274" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E213450" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96060" e_stop="96255"/>
          <exon e_start="97559" e_stop="97636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTG</genome_strand>
        <mrna_strand>AGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCTACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAAGAAACTGAAAGCCTGAAATTGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350675" ref_strand="+" ref_description="SGN-E350675 [cTOS-7-A22]">
      <seq>ggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgatttacaaggaaatccactggaacactattatgatgaggattttgacatggtgtcaagtggcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="97259" stop="98649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97559" g_stop="97869" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97946" g_stop="98078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98163" g_stop="98349" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="631" r_length="187" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E350675" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97559" e_stop="97869"/>
          <exon e_start="97946" e_stop="98078"/>
          <exon e_start="98163" e_stop="98349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTA</genome_strand>
        <mrna_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTTGACATGGTGTCAAGTGGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354162" ref_strand="+" ref_description="SGN-E354162 [cTOS-16-A9]">
      <seq>ggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctggacacattcgttacgatggtgaaaggcattattggattgcatttgcctcggaaaacacatattcatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="97259" stop="98482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97559" g_stop="97869" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97946" g_stop="98078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98163" g_stop="98182" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="464" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E354162" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97559" e_stop="97869"/>
          <exon e_start="97946" e_stop="98078"/>
          <exon e_start="98163" e_stop="98182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGA</genome_strand>
        <mrna_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGGACACATTCGTTACGATGGTGAAAGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689649" ref_strand="+" ref_description="SGN-E689649 [LH_Ea01H07]">
      <seq>ccgttgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataacatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagaccaaaacgctacttagcaatctgcattttgctaatggcgttgcagtctctcctgatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtcgatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggttagtttcttcataacatttaaatttgatgtgttcaatctttagggtacaccgctctctcatattttgtttctgataacttgaacaggaaaacacatattcatgggacttggcactaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaaggcagagaaaaatggtggtgttttatctgctgatttacaaggaaatccactggaacactattatgatgaggatttgacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="97274" stop="98633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97569" g_stop="97869" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97946" g_stop="98333" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="693" r_length="392" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E689649" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97569" e_stop="97869"/>
          <exon e_start="97946" e_stop="98333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAA-C---AGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATG</genome_strand>
        <mrna_strand>CCGTTGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAACATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACCAAAACGCTACTTAGCAATCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCTGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTCGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTGATGTGTTCAATCTTTAGGGTACACCGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGGCACTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGGCAGAGAAAAATGGTGGTGTTTTATCTGCTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351756" ref_strand="+" ref_description="SGN-E351756 [cTOS-8-D22]">
      <seq>tgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgatttacaaggaaatccactggaacactattatgatgaggatttgacaatggtgtcaagtggcattaagattggtgatcatttgtactgtggctctgttaagtctccgtatatactacgcctcaatctcaaacaatatcctgccgtttaaacttcataaacaaaaatgtaagtgtttgatttcaaaaataatgggtgtatttgttagtacaagtatattcgttcaattttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="97329" stop="98816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97629" g_stop="97869" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97946" g_stop="98078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="374" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98163" g_stop="98516" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="727" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E351756" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97629" e_stop="97869"/>
          <exon e_start="97946" e_stop="98078"/>
          <exon e_start="98163" e_stop="98516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</genome_strand>
        <mrna_strand>TGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTC-AAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304314" ref_strand="-" ref_description="SGN-E304314 [cLEX-12-O9]">
      <seq>cagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgattcacaaggaaatccactggaacactattatgatgaggatttgacaatggtgtcaagtggcattaagattggtgatcatttgtactgtggctctgttaagtctccgtatatactacgcctcaatctcaaacaatatcctgccgtttaaacttcataaacaaaaatgtaagtgtttgatttcaaaaaataatgggtgtatttgttagtacaagtatattcgttcaattttgcataagatttccactatataagatgtgtaagtgttttctttttaatttattataaataataataagagtcacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="97533" stop="98890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97833" g_stop="97869" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97946" g_stop="98078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="170" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98163" g_stop="98585" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="593" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="612"/>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-E304314" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304314" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97833" e_stop="97869"/>
          <exon e_start="97946" e_stop="98078"/>
          <exon e_start="98163" e_stop="98585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCA</genome_strand>
        <mrna_strand>CAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTCACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299936" ref_strand="+" ref_description="SGN-E299936 [cLEW-11-G5]">
      <seq>ttgtgtatggttcttctgttaaattcacttgggaagagactcataatagatgtctaaagatggcttctgctctgtctcagttgggtatttctcgtggtgatgttgtaagttcgatttctccgctttagaatattacgtctaaatgaatggttaatagtatatggctaaactttttcatctttggaataaacttctactaacattttagtttgatcacatatgaaaagtttttaaatctgtgatgtctcatggttgttagtgtaaatgcttgaataggttgcaacgctggctcctaatgtacccgcagtgcaagagttgcattttgcggttccaatggcaggagcagtgctttgtacgttgaatacacgtcatgattcagctatggtatctgttctcctgaggcattcagaagctaagatcattttcgttgaccagcagttgtttgatgttgctcaaagagcactggatcttcttgcagatgctaaaacaaaacctcttctaatattaatccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="102834" stop="101721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102534" g_stop="102021" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E299936" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102534" e_stop="102021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</genome_strand>
        <mrna_strand>TTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAAGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307495" ref_strand="+" ref_description="SGN-E307495 [cLEY-12-P4]">
      <seq>atgaatccttttttcaatatttcaagattgaatgggttgttacatgctctaaacagagttcgagttcaccccattttgagtcagaggtctcgttatttgtcccaaattattcatgagaatgttgaaactcacccatgggaatccatggagggactaatgaggtgttcagctaattatttccctttaacacccattagtttcttggacagagctgctaaggtttttagagacaggacttctgttgtgtatggttcttctgttaaattcacttgggaagagactcataatagatgtctaaagatggcttctgctctgtctcagttgggtatttctcgtggtgatgttgttgcaacgctggctcctaatgtacccgcagtgcaagagttgcattttgcggttccaatggcaggagcagtgctttgtacgttgaatacacgtcatgattcagctatggtatctgttctcctgaggcattcagaagctaagatcattttcgttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="103075" stop="101802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102775" g_stop="102431" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102430" i_stop="102259" i_length="172">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102258" g_stop="102102" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="502" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E307495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102775" e_stop="102431"/>
          <exon e_start="102258" e_stop="102102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACC</genome_strand>
        <mrna_strand>ATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTT............................................................................................................................................................................GTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555097" ref_strand="+" ref_description="SGN-E555097 [cTSC-6-G20]">
      <seq>gagtacatcacttatatggactaacagagacatatggtccaggtacatataatttgtggaggcctgagtgggattctttaccaccaaacgaaaagtacaaactgaaagcaagacaaggggtgcaacatctttgttcagaggcagtggatgtgatggaccctcttacaatggagaaagtaccagaagatggtaaaacaataggtgaaattatgtttagagggaatacagtaatgagtgaatatctgaaagatgaagaagcaacaaaagaagcttttaaaggtggatggtttcatagtggtgatttggctgtgaaacatccagacggatacatagaagttaaggacagattgaaagatatcgtaatctctggtggagaaaacataagcacaatagaggtggaaagagttttgtatagtcatccagcagtttttgaaacagcagtggttgcgcgaccagataatcactgggggcaaacaccttgtgcatttgtgaagttgaaggatggttcaaatgttagtgagcaagaaattatcaacttctgcagggataacttgcctcattacatggcacctcgaacagtcatatttcaacatctccctaaaacttcaacaggcaaaatacaaaaattcattctaagagagaaagccagagccttgggaagtctttgctgaaggaaatccgtttttcttgctgtccgattctctttcttctaattttctacaactgaaagacttctatctatgctgtaatctgtttttcttaccttttaaagattgaagtctcctcaaaaggtgtatgctaatgatctctatgttgtacaagctggacatggtgtatctctttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="109288" stop="107842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108988" g_stop="108142" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-E555097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108988" e_stop="108142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGTGTATCTCTTTGCTA</genome_strand>
        <mrna_strand>GAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGTGTATCTCTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>101</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12909" PGL_stop="18147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12909" e_stop="12965"/>
            <exon e_start="13095" e_stop="13154"/>
            <exon e_start="17873" e_stop="18147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12909" e_stop="12965" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12966" i_stop="13094" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13095" e_stop="13154" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13155" i_stop="17872" i_length="4718"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="17873" e_stop="18147" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12909" stop="12965"/>
              <exon start="13095" stop="13154"/>
              <exon start="17873" stop="18147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12918" stop="12965"/>
              <exon start="13095" stop="13154"/>
              <exon start="17873" stop="18147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTAAAGAATCGTGATCAAGTTATAGAGGGGATGGATTTAGTTGTGATGAACCAG : GGCGTAGACGGAAGGATATTTGGTATTTGGTAAAGAAAACTCGGGTTCAAGGGAAGATAG : GTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</gDNA_template>
            <first_frame> N  L  K  N  R  D  Q  V  I  E  G  M  D  L  V  V  M  N  Q  :  G  V  D  G  R  I  F  G  I  W  *  R  K  L  G  F  K  G  R  *  :  V  Q  A  Q  V  D  A  R  A  T  G  S  L  L  Q  L  S  G  H  Q  Y  S  S  G  V  W  *  V  L  M  L  S  R  M  L  P  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  K  L  C  I  G  A  I  L  A  D  I  Q  V  I  L  N  E  L  F  L  S  V  A  Y  L  L  N  V  R  W   </first_frame>
            <second_frame>  I  *  R  I  V  I  K  L  *  R  G  W  I  *  L  *  *  T  R :   A  *  T  E  G  Y  L  V  F  G  K  E  N  S  G  S  R  E  D  R :   C  K  H  R  W  T  L  E  L  Q  V  R  C  C  S  Y  P  D  I  S  I  H  P  E  F  G  R  S  S  C  F  R  G  C  Y  R  F  T  F  *  R  S  F  R  V  E  L  A  E  H  V  P  L  A  F  L  S  C  F  G  S  N  F  V  L  A  L  F  W  P  I  Y  K  *  Y  L  M  N  Y  F  F  Q  L  L  I  S  *  M  L  D  G  </second_frame>
            <third_frame>   F  K  E  S  *  S  S  Y  R  G  D  G  F  S  C  D  E  P   : G  R  R  R  K  D  I  W  Y  L  V  K  K  T  R  V  Q  G  K  I   : G  A  S  T  G  G  R  *  S  Y  R  F  V  V  A  A  I  R  T  S  V  F  I  R  S  L  V  G  P  H  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  R  S  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  R  Y  F  G  R  Y  T  S  N  T  *  *  I  I  S  F  S  C  L  S  L  K  C  *  M  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0238L13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="61620" PGL_stop="60799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61620" e_stop="60799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="61620" e_stop="60799" e_length="822"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61620" stop="60885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61612" stop="60799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61588" stop="61048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61506" stop="61141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTA</gDNA_template>
            <first_frame> N  P  N  F  V  L  T  E  G  R  S  G  Y  N  K  T  K  K  Q  L  R  K  W  G  N  Y  H  L  P  *  G  Q  L  T  L  L  *  T  L  S  S  K  L  H  L  H  P  H  P  H  P  H  L  Q  P  Q  N  P  I  I  I  P  K  N  H  N  H  P  R  K  N  P  H  Q  L  L  N  P  S  F  H  H  L  F  *  P  L  I  Q  H  L  F  Q  M  L  K  P  F  S  I  L  *  F  P  V  P  E  T  P  L  Q  T  T  N  F  I  M  Q  F  F  N  H  F  P  P  I  Q  L  S  K  I  Q  S  F  S  L  I  T  *  S  R  F  T  L  L  S  P  L  T  G  L  H  T  M  F  S  S  S  N  L  V  S  L  L  T  F  L  Y  P  L  F  I  R  F  L  I  L  *  L  P  M  V  S  L  L  I  R  S  P  Q  T  L  L  *  G  P  F  A  L  P  A  T  K  S  K  P  L  S  *  *  K  N  F  P  P  K  T  L  P  L  I  H  I  L  I  I  L  L  L  G  I  C  A  R  T  G  L  *  V  P  *  I  T  L  L  K  K  *  G  K  V  L  I  *  N  L  I  L  L  H  I  Q  L  *  L  T  M  F  V  I  V  K  I  L </first_frame>
            <second_frame>  T  L  I  L  S  S  Q  K  E  E  V  V  T  T  R  R  R  N  S  *  E  N  G  E  I  T  T  F  L  K  V  S  *  L  C  C  K  H  S  H  Q  N  S  I  S  I  P  I  P  I  P  T  S  N  L  K  T  P  L  L  S  Q  K  I  T  I  T  Q  E  K  T  H  I  N  Y  *  T  P  A  S  I  I  Y  S  S  L  *  F  N  I  S  F  R  C  *  N  P  F  Q  F  S  D  F  Q  Y  Q  K  P  L  Y  R  Q  Q  I  L  *  C  S  S  S  I  I  F  L  Q  F  N  S  P  R  F  N  L  F  P  *  S  H  D  Q  G  S  P  S  F  L  P  *  Q  V  Y  I  P  C  S  P  R  P  I  L  *  V  C  *  P  F  F  I  P  C  S  S  G  S  *  S  Y  D  Y  Q  W  F  P  S  *  *  G  L  H  R  H  C  C  E  D  P  L  L  F  R  P  R  R  A  S  H  *  A  S  E  R  T  F  L  Q  R  L  S  P  *  Y  I  Y  L  *  F  Y  Y  *  A  F  V  Q  E  Q  A  F  E  Y  H  E  *  L  Y  *  R  N  E  G  R  F  *  Y  K  T  *  S  C  Y  I  Y  N  Y  D  *  Q  C  L  *  *  *  K  S   </second_frame>
            <third_frame>   P  *  F  C  P  H  R  R  K  K  W  L  Q  Q  D  E  E  T  A  E  K  M  G  K  L  P  P  S  L  R  S  A  N  F  A  V  N  T  L  I  K  T  P  S  P  S  P  S  P  S  P  P  P  T  S  K  P  H  Y  Y  P  K  K  S  Q  S  P  K  K  K  P  T  S  I  T  E  P  Q  L  P  S  S  I  L  A  F  D  S  T  S  L  S  D  A  K  T  L  F  N  S  L  I  S  S  T  R  N  P  S  T  D  N  K  F  Y  N  A  V  L  Q  S  F  S  S  N  S  T  L  Q  D  S  I  F  F  L  N  H  M  I  K  V  H  P  P  F  S  P  D  R  F  T  Y  H  V  L  L  V  Q  S  C  K  S  V  D  L  S  L  S  P  V  H  Q  V  L  N  L  M  T  T  N  G  F  P  P  N  K  V  S  T  D  I  A  V  R  T  L  C  S  S  G  H  E  E  Q  A  I  E  L  V  K  E  L  S  S  K  D  S  P  P  D  T  Y  T  Y  N  F  I  I  R  H  L  C  K  N  R  P  L  S  T  M  N  N  F  I  K  E  M  R  E  G  F  D  I  K  P  D  L  V  T  Y  T  I  M  I  D  N  V  C  N  S  K  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61612" stop="60800"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCPHRRKKWLQQDEETAEKMGKLPPSLRSANFAVNTLIKTPSPSPSPSPPPTSKPHYYPKKSQSPKKKPTSITEPQLPSSILAFDSTSLSDAKTLFNSLISSTRNPSTDNKFYNAVLQSFSSNSTLQDSIFFLNHMIKVHPPFSPDRFTYHVLLVQSCKSVDLSLSPVHQVLNLMTTNGFPPNKVSTDIAVRTLCSSGHEEQAIELVKELSSKDSPPDTYTYNFIIRHLCKNRPLSTMNNFIKEMREGFDIKPDLVTYTIMIDNVCNSKNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="64503" PGL_stop="64238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64503" e_stop="64238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="64503" e_stop="64238" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64503" stop="64238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64502" stop="64238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTATCAGAGGAAT</gDNA_template>
            <first_frame> L  I  T  N  I  I  N  G  G  I  E  C  G  K  G  S  N  P  K  M  E  N  R  I  G  F  Y  K  R  Y  L  E  S  I  L  G  S  I  W  T  V  L  N  K  R  L  L  A  S  K  I  N  Y  Y  I  V  K  *  C  T  S  S  S  H  S  D  W  *  E  I  C  Y  P  K  Y  L  S  Y  I  I  K  Q  S  Y  I  I  R  G   </first_frame>
            <second_frame>  *  S  P  T  *  L  M  E  E  *  N  V  E  K  V  L  I  Q  K  W  R  I  E  L  G  F  T  R  D  T  W  S  Q  S  W  G  Q  F  G  L  C  *  T  N  A  F  W  P  V  K  *  T  T  T  *  S  N  N  V  L  L  P  A  I  V  I  G  E  K  Y  V  I  Q  N  I  *  V  I  *  *  N  K  V  I  L  S  E  E  </second_frame>
            <third_frame>   N  H  Q  H  N  *  W  R  N  R  M  W  K  R  F  *  S  K  N  G  E  *  N  W  V  L  Q  E  I  L  G  V  N  P  G  V  N  L  D  C  A  K  Q  T  P  F  G  Q  *  N  K  L  L  H  S  Q  I  M  Y  F  F  Q  P  *  *  L  V  R  N  M  L  S  K  I  F  K  L  Y  N  K  T  K  L  Y  Y  Q  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0238L13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="65893" PGL_stop="64509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65893" e_stop="65622"/>
            <exon e_start="64947" e_stop="64794"/>
            <exon e_start="64717" e_stop="64509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.989" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="65893" e_stop="65622" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65621" i_stop="64948" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64947" e_stop="64794" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.920">
            <gDNA_intron_boundary i_start="64793" i_stop="64718" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64717" e_stop="64509" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65893" stop="65622"/>
              <exon start="64947" stop="64794"/>
              <exon start="64717" stop="64509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGTCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCG : GGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTA : CAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCT</gDNA_template>
            <first_frame> Q  N  Y  V  L  G  F  C  F  V  L  C  V  V  Y  K  R  R  I  D  T  R  C  W  C  S  Y  *  *  R  H  I  *  E  N  A  I  A  S  *  *  C  Q  L  *  C  Q  R  I  L  H  L  *  C  F  Y  N  S  C  K  V  L  C  C  F  W  N  Y  W  K  H  Q  H  S  *  E  G  N  R  C  I  F  G  T  N  F  S  *  N  N  R :   G  V  G  N  S  S  G  W  S  I  F  M  G  I  L  L  Q  A  R  T  R  *  P  T  R  L  L  C  C  K  S  T  V  A  L  C  S  W  *  K  I  L  W  S  R  S  H  P  N  I  L  :  Q  L  Q  L  W  T  S  R  K  S  H  R  S  *  F  V  K  Q  S  R  C  C  C  K  *  C  S  R  F  I  Q  D  S  L  V  V  L  D  D  G  P  E  T  K  A  I  G  P  F  C  Y  Y  W  *  M  E  T  N  R  S  *  F  V  C  W  S  C  L  W   </first_frame>
            <second_frame>  K  I  M  F  W  G  F  V  L  F  C  V  L  S  T  R  G  G  L  T  Q  D  V  G  A  L  I  S  K  D  I  F  E  R  M  L  L  H  R  N  D  A  N  C  N  A  K  G  F  Y  T  Y  D  A  F  I  T  A  A  R  S  F  A  A  F  G  T  T  G  N  T  N  T  R  K  K  E  I  A  A  F  L  A  Q  T  S  L  E  T  T   : G  G  W  G  T  A  P  D  G  P  F  S  W  G  Y  C  F  K  Q  E  Q  G  S  P  P  D  Y  C  V  A  N  Q  Q  W  P  C  A  P  G  K  K  Y  F  G  R  G  P  I  Q  I  S  Y :   N  Y  N  Y  G  P  A  G  R  A  I  G  V  D  L  L  N  N  P  D  A  V  A  N  D  A  V  V  S  F  K  T  A  L  W  F  W  M  T  A  Q  R  P  K  P  S  A  H  F  V  I  T  G  K  W  R  P  T  G  A  D  L  S  A  G  R  V  S  G  </second_frame>
            <third_frame>   K  L  C  F  G  V  L  F  C  F  V  C  C  L  Q  E  E  D  *  H  K  M  L  V  L  L  L  V  K  T  Y  L  R  E  C  Y  C  I  V  M  M  P  I  V  M  P  K  D  F  T  L  M  M  L  L  *  Q  L  Q  G  P  L  L  L  L  E  L  L  E  T  P  T  L  V  R  R  K  S  L  H  F  W  H  K  L  L  L  K  Q  P  :  G  G  G  E  Q  L  R  M  V  H  F  H  G  D  I  A  S  S  K  N  K  V  A  H  Q  I  T  V  L  Q  I  N  S  G  L  V  L  L  V  K  N  T  L  V  E  V  P  S  K  Y  P   : T  T  T  T  M  D  Q  Q  E  E  P  *  E  L  I  C  *  T  I  Q  M  L  L  Q  M  M  Q  S  F  H  S  R  Q  P  C  G  S  G  *  R  P  R  D  Q  S  H  R  P  I  L  L  L  L  V  N  G  D  Q  Q  E  L  I  C  L  L  V  V  S  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65892" stop="65622"/>
                    <exon start="64947" stop="64794"/>
                    <exon start="64717" stop="64510"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMFWGFVLFCVLSTRGGLTQDVGALISKDIFERMLLHRNDANCNAKGFYTYDAFITAARSFAAFGTTGNTNTRKKEIAAFLAQTSLETTGGWGTAPDGPFSWGYCFKQEQGSPPDYCVANQQWPCAPGKKYFGRGPIQISYNYNYGPAGRAIGVDLLNNPDAVANDAVVSFKTALWFWMTAQRPKPSAHFVITGKWRPTGADLSAGRVSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="76021" PGL_stop="74518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76021" e_stop="75694"/>
            <exon e_start="75437" e_stop="75329"/>
            <exon e_start="75225" e_stop="74518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76021" e_stop="75694" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75437" e_stop="75329" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="75225" e_stop="74518" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76021" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76000" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76000" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76000" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75999" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75999" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75998" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75992" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="75058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75989" stop="75694"/>
              <exon start="75437" stop="75397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75977" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75968" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75808" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75776" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75776" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75738" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75373" stop="75329"/>
              <exon start="75225" stop="74753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75337" stop="75329"/>
              <exon start="75225" stop="74518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75218" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75217" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75216" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75194" stop="74715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75115" stop="74714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75115" stop="74717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75099" stop="74705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG : GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG : GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGTAAAAAATAAAT</gDNA_template>
            <first_frame> *  T  L  S  N  A  *  E  R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  T  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  T   : G  G  S  L  S  A  D  G  P  F  A  G  G  Y  C  F  V  R  E  G  N  Q  M  G  S  G  F  Y  G  R  G  P  I  Q  L  T  G :   Q  S  N  Y  D  L  A  G  Q  A  I  G  Q  D  L  V  N  N  P  D  L  V  A  T  D  A  T  V  S  F  K  T  A  I  W  F  W  M  T  A  Q  G  N  K  P  S  C  H  D  V  I  T  G  Q  W  T  P  S  A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  D  I  L  I  S  P  L  F  T  *  F  L  H  L  Q  F  A  L  V  Y  E  G  S  N  F  N  N  S  S  G  Y  R  E  C  I  *  R  V  K  S  V  F  F  L  L  T  F  S  S  S  C  T  K  G  S  E  L  L  S  K  K  *   </first_frame>
            <second_frame>  K  H  Y  L  M  H  K  K  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  M  H  S  *  L  Q  P  I  H  F  Q  V  L  V  L  P  V  M  I  L  R  V  R  R  K  L  L  P  F  S  V  K  L  L  M  K  L  L  :  V  V  A  *  V  L  M  V  H  L  P  E  D  I  V  L  L  G  K  A  I  K  W  E  V  D  F  M  A  E  D  L  S  N  *  Q   : G  N  L  T  M  T  *  L  G  K  Q  L  D  K  T  *  L  T  T  L  T  *  *  L  Q  M  Q  L  Y  L  L  K  Q  Q  Y  G  S  G  *  P  H  K  A  I  S  H  H  A  T  M  L  S  Q  G  N  G  R  H  Q  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S  I  F  *  F  P  L  C  L  R  S  S  C  I  Y  N  L  H  *  Y  M  R  E  A  I  L  I  I  Q  V  A  T  G  S  V  F  R  G  L  K  V  Y  S  F  Y  *  L  L  V  V  V  A  Q  K  A  V  N  F  *  V  K  N  K  </second_frame>
            <third_frame>   N  T  I  *  C  I  R  K  N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  *  C  I  H  S  C  S  Q  F  I  S  R  F  W  Y  Y  R  *  *  Y  C  A  *  E  G  N  C  C  L  F  R  S  N  F  S  *  N  Y  W :   W  *  P  K  C  *  W  S  I  C  R  R  I  L  F  C  *  G  R  Q  S  N  G  K  W  I  L  W  Q  R  T  Y  P  I  D  R  :  A  I  *  L  *  L  S  W  A  S  N  W  T  R  L  S  *  Q  P  *  L  S  S  Y  R  C  N  C  I  F  *  N  S  N  M  V  L  D  D  R  T  R  Q  *  A  I  M  P  R  C  Y  H  R  A  M  D  A  I  S  R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H  R  Y  F  N  F  P  F  V  Y  V  V  L  A  F  T  I  C  T  S  I  *  G  K  Q  F  *  *  F  K  W  L  Q  G  V  Y  L  E  G  *  K  C  I  L  S  T  D  F  *  *  *  L  H  K  R  Q  *  T  F  E  *  K  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76000" stop="75694"/>
                    <exon start="75437" stop="75329"/>
                    <exon start="75225" stop="74850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQMGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75487" e_stop="75329"/>
            <exon e_start="75225" e_stop="74518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75487" e_stop="75329" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="75225" e_stop="74518" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75487" stop="75329"/>
              <exon start="75225" stop="74690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75373" stop="75329"/>
              <exon start="75225" stop="74753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75337" stop="75329"/>
              <exon start="75225" stop="74518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75218" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75217" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75216" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75194" stop="74715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75115" stop="74714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75115" stop="74717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75099" stop="74705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG : GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGTAAAAAATAAAT</gDNA_template>
            <first_frame> L  R  Y  I  H  Y  N  K  *  S  I  W  F  *  F  C  R  W  *  P  K  C  *  W  S  I  C  R  R  I  L  F  C  *  G  R  Q  S  N  G  K  W  I  L  W  Q  R  T  Y  P  I  D  R  :  A  I  *  L  *  L  S  W  A  S  N  W  T  R  L  S  *  Q  P  *  L  S  S  Y  R  C  N  C  I  F  *  N  S  N  M  V  L  D  D  R  T  R  Q  *  A  I  M  P  R  C  Y  H  R  A  M  D  A  I  S  R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H  R  Y  F  N  F  P  F  V  Y  V  V  L  A  F  T  I  C  T  S  I  *  G  K  Q  F  *  *  F  K  W  L  Q  G  V  Y  L  E  G  *  K  C  I  L  S  T  D  F  *  *  *  L  H  K  R  Q  *  T  F  E  *  K  I  N </first_frame>
            <second_frame>  Y  V  I  Y  T  T  I  S  E  V  F  G  S  N  F  A  G  G  S  L  S  A  D  G  P  F  A  G  G  Y  C  F  V  R  E  G  N  Q  M  G  S  G  F  Y  G  R  G  P  I  Q  L  T  G :   Q  S  N  Y  D  L  A  G  Q  A  I  G  Q  D  L  V  N  N  P  D  L  V  A  T  D  A  T  V  S  F  K  T  A  I  W  F  W  M  T  A  Q  G  N  K  P  S  C  H  D  V  I  T  G  Q  W  T  P  S  A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  D  I  L  I  S  P  L  F  T  *  F  L  H  L  Q  F  A  L  V  Y  E  G  S  N  F  N  N  S  S  G  Y  R  E  C  I  *  R  V  K  S  V  F  F  L  L  T  F  S  S  S  C  T  K  G  S  E  L  L  S  K  K  *   </second_frame>
            <third_frame>   T  L  Y  T  L  Q  *  V  K  Y  L  V  L  I  L  Q  V  V  A  *  V  L  M  V  H  L  P  E  D  I  V  L  L  G  K  A  I  K  W  E  V  D  F  M  A  E  D  L  S  N  *  Q   : G  N  L  T  M  T  *  L  G  K  Q  L  D  K  T  *  L  T  T  L  T  *  *  L  Q  M  Q  L  Y  L  L  K  Q  Q  Y  G  S  G  *  P  H  K  A  I  S  H  H  A  T  M  L  S  Q  G  N  G  R  H  Q  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S  I  F  *  F  P  L  C  L  R  S  S  C  I  Y  N  L  H  *  Y  M  R  E  A  I  L  I  I  Q  V  A  T  G  S  V  F  R  G  L  K  V  Y  S  F  Y  *  L  L  V  V  V  A  Q  K  A  V  N  F  *  V  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75486" stop="75329"/>
                    <exon start="75225" stop="74850"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVIYTTISEVFGSNFAGGSLSADGPFAGGYCFVREGNQMGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75997" e_stop="75730"/>
            <exon e_start="75049" e_stop="74705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="75997" e_stop="75730" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75729" i_stop="75050" i_length="680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75049" e_stop="74705" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75997" stop="75730"/>
              <exon start="75049" stop="74714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTG : CCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</gDNA_template>
            <first_frame> R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  T  G  D  D  T  A  R  K  K  E  I   : A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  </first_frame>
            <second_frame>  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  M  H  S  *  L  Q  P  I  H  F  Q  V  L  V  L  P  V  M  I  L  R  V  R  R  K  L  :  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S </second_frame>
            <third_frame>   N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  *  C  I  H  S  C  S  Q  F  I  S  R  F  W  Y  Y  R  *  *  Y  C  A  *  E  G  N  C :   R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75997" stop="75730"/>
                    <exon start="75049" stop="74850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="79358" PGL_stop="78255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79358" e_stop="79053"/>
            <exon e_start="78979" e_stop="78883"/>
            <exon e_start="78821" e_stop="78255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79358" e_stop="79053" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78979" e_stop="78883" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78821" e_stop="78255" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79358" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79346" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79344" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79344" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79341" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294352" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79339" stop="79053"/>
              <exon start="78979" stop="78968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79336" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79335" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79335" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79335" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79335" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79334" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79334" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79333" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79333" stop="79068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79328" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79313" stop="79149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79206" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79189" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79086" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79061" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78972" stop="78883"/>
              <exon start="78821" stop="78286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78966" stop="78883"/>
              <exon start="78821" stop="78302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78893" stop="78883"/>
              <exon start="78821" stop="78255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78884" stop="78883"/>
              <exon start="78821" stop="78282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78808" stop="78258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78743" stop="78265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78743" stop="78280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78716" stop="78260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78647" stop="78286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTGAAAAAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG : GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA : CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTTGAA</gDNA_template>
            <first_frame> Q  L  K  K  P  E  E  K  *  S  S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  :  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H   : T  N  L  T  T  N  E  L  D  K  V  L  V  L  D  K  S  *  *  T  T  L  I  *  L  R  Q  I  L  *  Y  H  S  K  Q  Q  Y  G  S  G  *  Q  N  R  I  I  N  H  H  A  T  T  L  S  L  D  N  G  R  H  P  L  K  I  Q  Q  L  I  E  F  Q  G  T  V  S  L  P  T  S  L  T  V  N  L  N  V  G  W  V  R  I  L  Q  R  K  V  E  L  D  F  T  G  G  I  V  V  C  *  M  F  L  L  V  K  I  W  T  V  T  I  K  R  T  S  P  R  A  K  R  L  Y  L  Y  I  E  R  E  C  K  L  C  L  C  I  T  L  *  S  L  *  V  I  F  G  C  N  Q  *  G  D  S  V  C  P  F  R  K  M  E  V  Y  F  Q  K  Y  *  S  Y  M  I  L  I  F  C  Y  K  L  C  *  </first_frame>
            <second_frame>  N  *  K  S  Q  R  K  N  E  V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W :   W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  :  P  I  *  L  R  T  S  W  T  R  Y  W  C  W  T  R  V  S  E  Q  P  *  F  S  C  D  R  S  Y  N  I  I  Q  N  S  N  M  V  L  D  D  R  T  G  *  *  T  I  M  P  Q  R  Y  H  W  T  M  D  A  I  P  *  R  Y  S  S  *  *  S  S  R  V  R  C  H  Y  Q  H  H  *  R  S  I  *  M  W  D  G  S  E  Y  C  S  G  K  S  N  W  I  L  Q  E  V  L  W  Y  V  E  C  S  Y  W  *  K  F  G  L  *  Q  S  K  E  L  R  P  G  L  S  V  F  I  Y  I  *  R  E  N  A  N  Y  V  Y  V  L  R  C  E  V  Y  K  L  Y  L  D  V  I  N  K  G  I  L  Y  A  H  L  E  K  W  K  F  I  F  R  N  T  K  V  I  *  F  *  S  F  V  I  N  Y  V  E </second_frame>
            <third_frame>   T  E  K  A  R  G  K  M  K  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N   : G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  H :   Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  Q  E  L  V  N  N  P  D  L  V  A  T  D  P  I  I  S  F  K  T  A  I  W  F  W  M  T  E  Q  D  N  K  P  S  C  H  N  V  I  I  G  Q  W  T  P  S  P  K  D  T  A  A  N  R  V  P  G  Y  G  V  I  T  N  I  I  N  G  Q  F  E  C  G  M  G  P  N  T  A  A  E  S  R  I  G  F  Y  R  R  Y  C  G  M  L  N  V  P  T  G  E  N  L  D  C  N  N  Q  K  N  F  A  Q  G  *  A  S  L  F  I  Y  R  E  R  M  Q  I  M  F  M  Y  Y  V  V  K  S  I  S  Y  I  W  M  *  S  I  R  G  F  C  M  P  I  *  K  N  G  S  L  F  S  E  I  L  K  L  Y  D  F  D  L  L  L  *  I  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79356" stop="79053"/>
                    <exon start="78979" stop="78883"/>
                    <exon start="78821" stop="78440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEKARGKMKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNFAQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79338" e_stop="78258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79338" e_stop="78258" e_length="1081"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79338" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79333" stop="79068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79313" stop="79149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78808" stop="78258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78743" stop="78265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78743" stop="78280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78716" stop="78260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78647" stop="78286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTT</gDNA_template>
            <first_frame> K  M  K  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N  G  N  L  D  H  P  S  *  H  C  N  L  *  V  T  I  E  L  Y  H  S  L  F  C  R  W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  V  R  Q  F  N  R  I  S  T  F  G  I  I  S  N  I  L  F  Y  A  A  N  L  T  T  N  E  L  D  K  V  L  V  L  D  K  S  *  *  T  T  L  I  *  L  R  Q  I  L  *  Y  H  S  K  Q  Q  Y  G  S  G  *  Q  N  R  I  I  N  H  H  A  T  T  L  S  L  D  N  G  R  H  P  L  K  I  Q  Q  L  I  E  F  Q  G  T  V  S  L  P  T  S  L  T  V  N  L  N  V  G  W  V  R  I  L  Q  R  K  V  E  L  D  F  T  G  G  I  V  V  C  *  M  F  L  L  V  K  I  W  T  V  T  I  K  R  T  S  P  R  A  K  R  L  Y  L  Y  I  E  R  E  C  K  L  C  L  C  I  T  L  *  S  L  *  V  I  F  G  C  N  Q  *  G  D  S  V  C  P  F  R  K  M  E  V  Y  F  Q  K  Y  *  S  Y  M  I  L  I  F  C  Y  K  L  C  </first_frame>
            <second_frame>  K  *  S  S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  V  I  W  I  I  L  L  S  I  V  I  Y  R  *  Q  L  N  Y  I  I  R  S  F  A  G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  Q  *  D  N  S  I  E  Y  Q  H  L  E  S  L  V  I  F  F  F  M  Q  P  I  *  L  R  T  S  W  T  R  Y  W  C  W  T  R  V  S  E  Q  P  *  F  S  C  D  R  S  Y  N  I  I  Q  N  S  N  M  V  L  D  D  R  T  G  *  *  T  I  M  P  Q  R  Y  H  W  T  M  D  A  I  P  *  R  Y  S  S  *  *  S  S  R  V  R  C  H  Y  Q  H  H  *  R  S  I  *  M  W  D  G  S  E  Y  C  S  G  K  S  N  W  I  L  Q  E  V  L  W  Y  V  E  C  S  Y  W  *  K  F  G  L  *  Q  S  K  E  L  R  P  G  L  S  V  F  I  Y  I  *  R  E  N  A  N  Y  V  Y  V  L  R  C  E  V  Y  K  L  Y  L  D  V  I  N  K  G  I  L  Y  A  H  L  E  K  W  K  F  I  F  R  N  T  K  V  I  *  F  *  S  F  V  I  N  Y  V </second_frame>
            <third_frame>   N  E  V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W  *  F  G  S  S  F  L  A  L  *  F  I  G  N  N  *  I  I  S  F  A  L  L  Q  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H  S  K  T  I  Q  *  N  I  N  I  W  N  H  *  *  Y  S  F  L  C  S  Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  Q  E  L  V  N  N  P  D  L  V  A  T  D  P  I  I  S  F  K  T  A  I  W  F  W  M  T  E  Q  D  N  K  P  S  C  H  N  V  I  I  G  Q  W  T  P  S  P  K  D  T  A  A  N  R  V  P  G  Y  G  V  I  T  N  I  I  N  G  Q  F  E  C  G  M  G  P  N  T  A  A  E  S  R  I  G  F  Y  R  R  Y  C  G  M  L  N  V  P  T  G  E  N  L  D  C  N  N  Q  K  N  F  A  Q  G  *  A  S  L  F  I  Y  R  E  R  M  Q  I  M  F  M  Y  Y  V  V  K  S  I  S  Y  I  W  M  *  S  I  R  G  F  C  M  P  I  *  K  N  G  S  L  F  S  E  I  L  K  L  Y  D  F  D  L  L  L  *  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78838" stop="78440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFLCSQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNFAQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79338" stop="79030"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGNLDHPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="84412" PGL_stop="87728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84412" e_stop="84602"/>
            <exon e_start="87191" e_stop="87728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84412" e_stop="84602" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84603" i_stop="87190" i_length="2588"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87191" e_stop="87728" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84412" stop="84602"/>
              <exon start="87191" stop="87728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTT : GTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCT</gDNA_template>
            <first_frame> D  W  *  F  A  L  Q  T  T  Y  H  *  H  L  *  V  F  W  N  V  L  H  L  F  T  A  K  T  *  P  *  F  M  E  T  *  V  I  H  G  K  N  Y  M  E  D  V  S  T  L  H  L  L  F  L  N  L  E  F  H  L  V  M  L :   W  Q  R  W  H  L  M  *  Q  H  N  M  S  Y  I  L  V  Y  Q  W  L  V  Q  S  F  L  H  S  T  Q  C  *  M  P  P  H  W  L  K  N  S  N  N  W  R  P  K  S  F  L  Y  T  L  I  S  L  N  *  C  F  K  H  L  P  F  F  K  K  K  T  N  L  V  *  L  S  *  S  M  K  E  T  M  *  Q  N  H  Q  C  H  H  Q  G  H  Q  K  F  W  I  T  K  H  F  L  K  W  G  S  L  I  S  R  L  C  I  R  K  M  N  L  I  R  F  R  S  I  L  L  L  D  Q  Q  G  S  L  K  G  L  C  I  A  I  E  L  L  I  *  I  Q  L  L  T  F  F  D  T  K  W  E  K  A  L  F  F  S  G  Q  W  I  C  F  D  A  T  G  G  V  S  P </first_frame>
            <second_frame>  I  G  S  L  P  C  K  P  R  T  I  D  T  S  K  F  F  G  T  C  C  I  C  L  P  Q  K  H  S  L  N  L  W  K  H  K  L  F  M  G  R  I  T  W  K  M  Y  Q  P  C  I  C  S  F  S  T  W  S  F  I  W  *  C   : C  G  N  G  G  T  *  C  S  S  T  I  *  A  T  F  W  C  T  N  G  W  C  S  P  F  C  T  Q  H  N  A  R  C  H  H  I  G  S  K  T  P  T  I  G  G  Q  N  H  F  C  I  L  *  F  H  *  T  S  A  S  S  T  C  H  S  S  R  K  R  Q  I  L  S  N  C  L  N  P  *  R  K  Q  C  N  K  T  T  S  V  I  I  R  A  I  K  N  S  G  L  P  N  T  S  *  N  G  A  A  *  F  Q  D  Y  A  S  E  K  *  I  *  S  D  F  D  Q  F  Y  F  W  I  N  R  E  A  *  R  G  C  V  *  P  *  S  C  L  F  E  Y  N  C  *  H  F  S  I  R  N  G  K  K  P  C  F  S  L  D  S  G  Y  V  S  M  Q  R  V  V  S  P   </second_frame>
            <third_frame>   L  V  V  C  P  A  N  H  V  P  L  T  P  L  S  F  L  E  R  A  A  F  V  Y  R  K  N  I  A  L  I  Y  G  N  I  S  Y  S  W  E  E  L  H  G  R  C  I  N  L  A  S  A  L  S  Q  L  G  V  S  S  G  D  V  :  V  A  T  V  A  P  N  V  A  A  Q  Y  E  L  H  F  G  V  P  M  A  G  A  V  L  S  A  L  N  T  M  L  D  A  T  T  L  A  Q  K  L  Q  Q  L  E  A  K  I  I  F  V  Y  S  D  F  I  E  L  V  L  Q  A  L  A  I  L  Q  E  K  D  K  S  C  L  I  V  L  I  H  E  G  N  N  V  T  K  P  P  V  S  S  S  G  P  S  K  I  L  D  Y  Q  T  L  L  E  M  G  Q  P  N  F  K  I  M  H  P  K  N  E  F  D  P  I  S  I  N  F  T  S  G  S  T  G  K  P  K  G  A  V  Y  S  H  R  A  A  Y  L  N  T  I  A  D  I  F  R  Y  E  M  G  K  S  P  V  F  L  W  T  V  D  M  F  R  C  N  G  W  C  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84414" stop="84602"/>
                    <exon start="87191" stop="87727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVVCPANHVPLTPLSFLERAAFVYRKNIALIYGNISYSWEELHGRCINLASALSQLGVSSGDVVATVAPNVAAQYELHFGVPMAGAVLSALNTMLDATTLAQKLQQLEAKIIFVYSDFIELVLQALAILQEKDKSCLIVLIHEGNNVTKPPVSSSGPSKILDYQTLLEMGQPNFKIMHPKNEFDPISINFTSGSTGKPKGAVYSHRAAYLNTIADIFRYEMGKSPVFLWTVDMFRCNGWCLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="88309" PGL_stop="88803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88309" e_stop="88803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="88309" e_stop="88803" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88309" stop="88803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88309" stop="88801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAACATTGC</gDNA_template>
            <first_frame> E  G  S  R  C  *  R  S  Q  N  *  W  E  N  Y  K  H  T  *  N  *  R  C  F  D  *  A  S  Y  G  F  G  S  C  S  C  S  K  M  *  *  C  S  W  R  D  P  L  C  F  C  E  T  E  K  R  V  F  Y  D  *  *  R  N  Y  Q  V  L  *  R  L  A  A  G  L  H  G  S  *  G  S  N  L  W  *  F  T  I  Q  F  F  R  E  N  T  E  I  Y  T  *  G  Q  G  Q  Q  C  N  E  V  V  S  T  S  W  V  Q  L  S  W  R  A  A  H  T  F  I  L  V  V  G  I  R  I  S  I  Y  S  L  P  T  I  K  K  K  K  T  L  K  Y  A  C  L  N  K  N  C  P  F  S  V  L  Q  K  H  C </first_frame>
            <second_frame>  K  D  R  A  V  D  V  V  K  T  D  G  K  T  I  S  T  L  E  I  E  G  V  L  I  R  H  P  M  V  L  E  V  A  V  V  A  R  C  D  D  V  L  G  E  T  P  C  A  F  V  K  L  K  K  G  C  F  M  T  D  E  E  I  I  K  F  C  E  D  W  L  Q  D  Y  M  V  P  K  A  V  I  F  G  D  L  P  F  N  S  S  G  K  I  Q  K  F  I  L  R  D  K  V  N  N  A  M  K  L  C  L  Q  V  G  C  N  S  V  G  E  L  P  T  P  S  S  *  W  W  G  F  E  F  R  Y  I  P  S  P  P  *  K  K  K  K  H  *  N  M  H  A  L  I  K  I  V  L  F  Q  S  C  K  N  I   </second_frame>
            <third_frame>   R  I  A  L  L  T  *  S  K  L  M  G  K  L  *  A  H  L  K  L  K  V  F  *  L  G  I  L  W  F  W  K  L  Q  L  *  Q  D  V  M  M  F  L  E  R  P  L  V  L  L  *  N  *  K  K  G  V  L  *  L  M  K  K  L  S  S  F  V  K  I  G  C  R  I  T  W  F  L  R  Q  *  S  L  V  I  Y  H  S  I  L  Q  G  K  Y  R  N  L  Y  L  G  T  R  S  T  M  Q  *  S  C  V  Y  K  L  G  A  T  Q  L  A  S  C  P  H  L  H  P  S  G  G  D  S  N  F  D  I  F  P  P  H  H  K  K  K  K  N  I  E  I  C  M  P  *  *  K  L  S  F  F  S  L  A  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88310" stop="88690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRAVDVVKTDGKTISTLEIEGVLIRHPMVLEVAVVARCDDVLGETPCAFVKLKKGCFMTDEEIIKFCEDWLQDYMVPKAVIFGDLPFNSSGKIQKFILRDKVNNAMKLCLQVGCNSVGELPTPSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="95682" PGL_stop="98585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95682" e_stop="96255"/>
            <exon e_start="97559" e_stop="97869"/>
            <exon e_start="97946" e_stop="98078"/>
            <exon e_start="98163" e_stop="98585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="95682" e_stop="96255" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97559" e_stop="97869" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97946" e_stop="98078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="98163" e_stop="98585" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95682" stop="96225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95723" stop="96057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95749" stop="96188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95808" stop="96255"/>
              <exon start="97559" stop="97865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95923" stop="96255"/>
              <exon start="97559" stop="97828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95925" stop="96255"/>
              <exon start="97559" stop="97584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95996" stop="96255"/>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="97982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95996" stop="96255"/>
              <exon start="97559" stop="97817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96060" stop="96255"/>
              <exon start="97559" stop="97636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97629" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97833" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG : GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCA</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L   : G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  I  R  F  P  L  Y  K  M  C  K  C  F  L  F  N  L  L  *  I  I  I  R  V  </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  :  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A  *  D  F  H  Y  I  R  C  V  S  V  F  F  L  I  Y  Y  K  *  *  *  E  S </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  R :   D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R :   K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L  H  K  I  S  T  I  *  D  V  *  V  F  S  F  *  F  I  I  N  N  N  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95758" stop="96255"/>
                    <exon start="97559" stop="97869"/>
                    <exon start="97946" stop="98078"/>
                    <exon start="98163" stop="98432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVIISNVNPSSALLFTLAPISSSSSTITTANMTSPSIFLNPIFISLIIPVILGTVFYQLDSFDPVSYPTHVLSTDPPIVAPKRNNQVLRGSENIGVNQLLAPEDVAYDPESGVIYTACVDGWVKKVKVNESAADSTVEDWVFTGGRPLGLALGHHGEVIVADSEKGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95682" e_stop="96255"/>
            <exon e_start="97559" e_stop="97869"/>
            <exon e_start="97946" e_stop="98333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="95682" e_stop="96255" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97559" e_stop="97869" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.961">
            <gDNA_exon_boundary e_start="97946" e_stop="98333" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95682" stop="96225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95723" stop="96057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95749" stop="96188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95808" stop="96255"/>
              <exon start="97559" stop="97865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95923" stop="96255"/>
              <exon start="97559" stop="97828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95925" stop="96255"/>
              <exon start="97559" stop="97584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95996" stop="96255"/>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="97982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95996" stop="96255"/>
              <exon start="97559" stop="97817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96060" stop="96255"/>
              <exon start="97559" stop="97636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97569" stop="97869"/>
              <exon start="97946" stop="98333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATG</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L  G  *  F  L  H  N  I  *  I  *  C  V  Q  Q  G  T  L  L  S  H  I  L  F  L  I  T  *  T  G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  V  S  F  F  I  T  F  K  F  N  V  F  N  R  V  H  C  S  L  I  F  C  F  *  *  L  E  Q  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  R :   D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R  L  V  S  S  *  H  L  N  L  M  C  S  T  G  Y  T  A  L  S  Y  F  V  S  D  N  L  N  R  K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95758" stop="96255"/>
                    <exon start="97559" stop="97869"/>
                    <exon start="97946" stop="98150"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVIISNVNPSSALLFTLAPISSSSSTITTANMTSPSIFLNPIFISLIIPVILGTVFYQLDSFDPVSYPTHVLSTDPPIVAPKRNNQVLRGSENIGVNQLLAPEDVAYDPESGVIYTACVDGWVKKVKVNESAADSTVEDWVFTGGRPLGLALGHHGEVIVADSEKGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASVSFFITFKFNVFNRVHCSLIFCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95682" e_stop="96255"/>
            <exon e_start="97551" e_stop="97869"/>
            <exon e_start="97946" e_stop="98078"/>
            <exon e_start="98163" e_stop="98585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="95682" e_stop="96255" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96256" i_stop="97550" i_length="1295"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97551" e_stop="97869" e_length="319"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97946" e_stop="98078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="98163" e_stop="98585" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95682" stop="96225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95723" stop="96057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95749" stop="96255"/>
              <exon start="97551" stop="97578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95749" stop="96188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97629" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97833" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : TGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG : GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCA</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : V  *  Q  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  :  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A  *  D  F  H  Y  I  R  C  V  S  V  F  F  L  I  Y  Y  K  *  *  *  E  S </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  C  D  R  D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R :   K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L  H  K  I  S  T  I  *  D  V  *  V  F  S  F  *  F  I  I  N  N  N  K  S   </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  S :   V  T  G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L   : G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  I  R  F  P  L  Y  K  M  C  K  C  F  L  F  N  L  L  *  I  I  I  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97556" stop="97869"/>
                    <exon start="97946" stop="98078"/>
                    <exon start="98163" stop="98432"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95784" stop="95984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFICSSIHTSPNFFFFFYNNNCKYDFSLHLSKPYFYFTNNTRYSRYGFLSTRFLRPGFLSDPCALY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="102775" PGL_stop="102021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102775" e_stop="102431"/>
            <exon e_start="102258" e_stop="102102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102775" e_stop="102431" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102430" i_stop="102259" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102258" e_stop="102102" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102775" stop="102431"/>
              <exon start="102258" stop="102102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTT : GTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACC</gDNA_template>
            <first_frame> M  N  P  F  F  N  I  S  R  L  N  G  L  L  H  A  L  N  R  V  R  V  H  P  I  L  S  Q  R  S  R  Y  L  S  Q  I  I  H  E  N  V  E  T  H  P  W  E  S  M  E  G  L  M  R  C  S  A  N  Y  F  P  L  T  P  I  S  F  L  D  R  A  A  K  V  F  R  D  R  T  S  V  V  Y  G  S  S  V  K  F  T  W  E  E  T  H  N  R  C  L  K  M  A  S  A  L  S  Q  L  G  I  S  R  G  D  V  :  V  A  T  L  A  P  N  V  P  A  V  Q  E  L  H  F  A  V  P  M  A  G  A  V  L  C  T  L  N  T  R  H  D  S  A  M  V  S  V  L  L  R  H  S  E  A  K  I  I  F  V  D  </first_frame>
            <second_frame>  *  I  L  F  S  I  F  Q  D  *  M  G  C  Y  M  L  *  T  E  F  E  F  T  P  F  *  V  R  G  L  V  I  C  P  K  L  F  M  R  M  L  K  L  T  H  G  N  P  W  R  D  *  *  G  V  Q  L  I  I  S  L  *  H  P  L  V  S  W  T  E  L  L  R  F  L  E  T  G  L  L  L  C  M  V  L  L  L  N  S  L  G  K  R  L  I  I  D  V  *  R  W  L  L  L  C  L  S  W  V  F  L  V  V  M  L :   L  Q  R  W  L  L  M  Y  P  Q  C  K  S  C  I  L  R  F  Q  W  Q  E  Q  C  F  V  R  *  I  H  V  M  I  Q  L  W  Y  L  F  S  *  G  I  Q  K  L  R  S  F  S  L  T </second_frame>
            <third_frame>   E  S  F  F  Q  Y  F  K  I  E  W  V  V  T  C  S  K  Q  S  S  S  S  P  H  F  E  S  E  V  S  L  F  V  P  N  Y  S  *  E  C  *  N  S  P  M  G  I  H  G  G  T  N  E  V  F  S  *  L  F  P  F  N  T  H  *  F  L  G  Q  S  C  *  G  F  *  R  Q  D  F  C  C  V  W  F  F  C  *  I  H  L  G  R  D  S  *  *  M  S  K  D  G  F  C  S  V  S  V  G  Y  F  S  W  *  C   : C  C  N  A  G  S  *  C  T  R  S  A  R  V  A  F  C  G  S  N  G  R  S  S  A  L  Y  V  E  Y  T  S  *  F  S  Y  G  I  C  S  P  E  A  F  R  S  *  D  H  F  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102775" stop="102431"/>
                    <exon start="102258" stop="102103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNPFFNISRLNGLLHALNRVRVHPILSQRSRYLSQIIHENVETHPWESMEGLMRCSANYFPLTPISFLDRAAKVFRDRTSVVYGSSVKFTWEETHNRCLKMASALSQLGISRGDVVATLAPNVPAVQELHFAVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102534" e_stop="102021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="102534" e_stop="102021" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102534" stop="102021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</gDNA_template>
            <first_frame> L  C  M  V  L  L  L  N  S  L  G  K  R  L  I  I  D  V  *  R  W  L  L  L  C  L  S  W  V  F  L  V  V  M  L  *  V  R  F  L  R  F  R  I  L  R  L  N  E  W  L  I  V  Y  G  *  T  F  S  S  L  E  *  T  S  T  N  I  L  V  *  S  H  M  K  S  F  *  I  C  D  V  S  W  L  L  V  *  M  L  E  *  V  A  T  L  A  P  N  V  P  A  V  Q  E  L  H  F  A  V  P  M  A  G  A  V  L  C  T  L  N  T  R  H  D  S  A  M  V  S  V  L  L  R  H  S  E  A  K  I  I  F  V  D  Q  Q  L  F  D  V  A  Q  G  A  L  D  L  L  A  D  A  K  T  K  P  L  L  I  L  I  P  </first_frame>
            <second_frame>  C  V  W  F  F  C  *  I  H  L  G  R  D  S  *  *  M  S  K  D  G  F  C  S  V  S  V  G  Y  F  S  W  *  C  C  K  F  D  F  S  A  L  E  Y  Y  V  *  M  N  G  *  *  Y  M  A  K  L  F  H  L  W  N  K  L  L  L  T  F  *  F  D  H  I  *  K  V  F  K  S  V  M  S  H  G  C  *  C  K  C  L  N  R  L  Q  R  W  L  L  M  Y  P  Q  C  K  S  C  I  L  R  F  Q  W  Q  E  Q  C  F  V  R  *  I  H  V  M  I  Q  L  W  Y  L  F  S  *  G  I  Q  K  L  R  S  F  S  L  T  S  S  C  L  M  L  L  K  E  H  W  I  F  L  Q  M  L  K  Q  N  L  F  *  Y  *  S  L </second_frame>
            <third_frame>   V  Y  G  S  S  V  K  F  T  W  E  E  T  H  N  R  C  L  K  M  A  S  A  L  S  Q  L  G  I  S  R  G  D  V  V  S  S  I  S  P  L  *  N  I  T  S  K  *  M  V  N  S  I  W  L  N  F  F  I  F  G  I  N  F  Y  *  H  F  S  L  I  T  Y  E  K  F  L  N  L  *  C  L  M  V  V  S  V  N  A  *  I  G  C  N  A  G  S  *  C  T  R  S  A  R  V  A  F  C  G  S  N  G  R  S  S  A  L  Y  V  E  Y  T  S  *  F  S  Y  G  I  C  S  P  E  A  F  R  S  *  D  H  F  R  *  P  A  V  V  *  C  C  S  R  S  T  G  S  S  C  R  C  *  N  K  T  S  S  N  I  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102258" stop="102022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATLAPNVPAVQELHFAVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDQQLFDVAQGALDLLADAKTKPLLILIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="108988" PGL_stop="108142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108988" e_stop="108142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108988" e_stop="108142" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108988" stop="108142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGTGTATCTCTTTGCTA</gDNA_template>
            <first_frame> E  Y  I  T  Y  M  D  *  Q  R  H  M  V  Q  V  H  I  I  C  G  G  L  S  G  I  L  Y  H  Q  T  K  S  T  N  *  K  Q  D  K  G  C  N  I  F  V  Q  R  Q  W  M  *  W  T  L  L  Q  W  R  K  Y  Q  K  M  V  K  Q  *  V  K  L  C  L  E  G  I  Q  *  *  V  N  I  *  K  M  K  K  Q  Q  K  K  L  L  K  V  D  G  F  I  V  V  I  W  L  *  N  I  Q  T  D  T  *  K  L  R  T  D  *  K  I  S  *  S  L  V  E  K  T  *  A  Q  *  R  W  K  E  F  C  I  V  I  Q  Q  F  L  K  Q  Q  W  L  R  D  Q  I  I  T  G  G  K  H  L  V  H  L  *  S  *  R  M  V  Q  M  L  V  S  K  K  L  S  T  S  A  G  I  T  C  L  I  T  W  H  L  E  Q  S  Y  F  N  I  S  L  K  L  Q  Q  A  K  Y  K  N  S  F  *  E  R  K  P  E  P  W  E  V  F  A  E  G  N  P  F  F  L  L  S  D  S  L  S  S  N  F  L  Q  L  K  D  F  Y  L  C  C  N  L  F  F  L  P  F  K  D  *  S  L  L  K  R  C  M  L  M  I  S  M  L  Y  K  L  D  M  V  Y  L  F  A  </first_frame>
            <second_frame>  S  T  S  L  I  W  T  N  R  D  I  W  S  R  Y  I  *  F  V  E  A  *  V  G  F  F  T  T  K  R  K  V  Q  T  E  S  K  T  R  G  A  T  S  L  F  R  G  S  G  C  D  G  P  S  Y  N  G  E  S  T  R  R  W  *  N  N  R  *  N  Y  V  *  R  E  Y  S  N  E  *  I  S  E  R  *  R  S  N  K  R  S  F  *  R  W  M  V  S  *  W  *  F  G  C  E  T  S  R  R  I  H  R  S  *  G  Q  I  E  R  Y  R  N  L  W  W  R  K  H  K  H  N  R  G  G  K  S  F  V  *  S  S  S  S  F  *  N  S  S  G  C  A  T  R  *  S  L  G  A  N  T  L  C  I  C  E  V  E  G  W  F  K  C  *  *  A  R  N  Y  Q  L  L  Q  G  *  L  A  S  L  H  G  T  S  N  S  H  I  S  T  S  P  *  N  F  N  R  Q  N  T  K  I  H  S  K  R  E  S  Q  S  L  G  K  S  L  L  K  E  I  R  F  S  C  C  P  I  L  F  L  L  I  F  Y  N  *  K  T  S  I  Y  A  V  I  C  F  S  Y  L  L  K  I  E  V  S  S  K  G  V  C  *  *  S  L  C  C  T  S  W  T  W  C  I  S  L  L </second_frame>
            <third_frame>   V  H  H  L  Y  G  L  T  E  T  Y  G  P  G  T  Y  N  L  W  R  P  E  W  D  S  L  P  P  N  E  K  Y  K  L  K  A  R  Q  G  V  Q  H  L  C  S  E  A  V  D  V  M  D  P  L  T  M  E  K  V  P  E  D  G  K  T  I  G  E  I  M  F  R  G  N  T  V  M  S  E  Y  L  K  D  E  E  A  T  K  E  A  F  K  G  G  W  F  H  S  G  D  L  A  V  K  H  P  D  G  Y  I  E  V  K  D  R  L  K  D  I  V  I  S  G  G  E  N  I  S  T  I  E  V  E  R  V  L  Y  S  H  P  A  V  F  E  T  A  V  V  A  R  P  D  N  H  W  G  Q  T  P  C  A  F  V  K  L  K  D  G  S  N  V  S  E  Q  E  I  I  N  F  C  R  D  N  L  P  H  Y  M  A  P  R  T  V  I  F  Q  H  L  P  K  T  S  T  G  K  I  Q  K  F  I  L  R  E  K  A  R  A  L  G  S  L  C  *  R  K  S  V  F  L  A  V  R  F  S  F  F  *  F  S  T  T  E  R  L  L  S  M  L  *  S  V  F  L  T  F  *  R  L  K  S  P  Q  K  V  Y  A  N  D  L  Y  V  V  Q  A  G  H  G  V  S  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108986" stop="108318"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHHLYGLTETYGPGTYNLWRPEWDSLPPNEKYKLKARQGVQHLCSEAVDVMDPLTMEKVPEDGKTIGEIMFRGNTVMSEYLKDEEATKEAFKGGWFHSGDLAVKHPDGYIEVKDRLKDIVISGGENISTIEVERVLYSHPAVFETAVVARPDNHWGQTPCAFVKLKDGSNVSEQEIINFCRDNLPHYMAPRTVIFQHLPKTSTGKIQKFILREKARALGSLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 147 chains have been computed
$ 
$ memory statistics:
$ 245592 bytes spliced alignments in total
$ 101 spliced alignments have been stored
$ 2431 bytes was the average size of a spliced alignment
$ 19416 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1765 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 169 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:16:07
-->
