<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:19:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584361" ref_strand="+" ref_description="SGN-U584361 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147788269|emb|CAN69960.1| (e_value=5e-76) hypothetical; (*ATH) AT2G17670.2 (e_value=2e-62) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr2:7681433-7683239 FORWARD | Aliases: None; (*SWP) sp|Q0WKZ3|PP105_ARATH (e_value=4e-17) Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580; ">
      <seq>ggaaccctaattttgtcctcacagaaggaagaagtgcttacaacaagacgaagaaacagctgagaaaatggggaaattaccaccttccttaaggtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcagatgctaaaacccttttcaattctctgatttccagtaccagaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagacattgctgtgaggaccctttgctcttccggccacgaagagcaagccattgagctagtgaaagaactttcctccaaagactctccccctgatacatatacttataattttattattaggcatttgtgcaagaacaggcctttgagtaccatgaataactttattaaagaaatgagggaaggttttgatataaaacctgatcttgttacatatacaattatgattgacaatgtttgtaatagtaaaaatcttagggaagcgactagattattaggagttctgagtgaggaaggctacaaccctgattgctatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="61921" stop="60437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61622" g_stop="60737" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="886" r_length="886" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U584361" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61622" e_stop="60737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTAGGGAAGCGACTAGATTATTAGGAGTTCTGAGTGAGGAAGGCTACAAGCCTGATTGCTATGTT</genome_strand>
        <mrna_strand>GGAACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGCTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTAGGGAAGCGACTAGATTATTAGGAGTTCTGAGTGAGGAAGGCTACAACCCTGATTGCTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576039" ref_strand="+" ref_description="SGN-U576039 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|21495|emb|CAA47921.1| (e_value=6e-12) chitinase; endochitinase [Solanum tuberosum]; (*SWP) sp|Q05537|CHID_SOLLC (e_value=3e-11) Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14; ">
      <seq>gcacgaggttaatcaccaacataattaatggaggaatagaatgtggaaaaggttctaatccaaaaatggagaatagaattgggttttacaagagatacttggagtcaatcctggggtcaatttggactgtgctaaacaaacgccttttggccagtaaaataaactactacatagtcaaataatgtacttcttccagccatagtgattggtgagaaatatgttatccaaaatatttaagttatataataaaacaaagttatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="64811" stop="63949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64511" g_stop="64249" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U576039" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64511" e_stop="64249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGTTTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATT</genome_strand>
        <mrna_strand>GCACGAGGTTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584901" ref_strand="+" ref_description="SGN-U584901 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|3790355|dbj|BAA33971.1| (e_value=2e-101) chitinase 134 [Nicotiana tabacum]; (*ATH) AT3G12500.1 (e_value=2e-83) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05537|CHID_SOLLC (e_value=4e-93) Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14; ">
      <seq>aacttggtaaaaactaaatgaagaacaaaattatgttttggggttttgttttgttttgtgtgttggctacaagaggaggattgacacaagatgttggtgctcttattagtaaagacatatttgagagaatgctattgcatcgtaatgatgccaattgtaatgccaaaggattttacacttatgatgcttttataacagctgcaaggtcctttgctgcttttggaactactggaaacaccaacactcgtaagaaggaaatcgctgcatttttggcacaaacttctcttgaaacaaccggggggtggggaacagctccggatggtccattttcatggggatattgcttcaagcaagaacaaggtagcccaccagattactgtgttacaaatcaacagtggccttgtgctcctggtaaaaaatactttggtcgaggtcccatccaaatatcctacaactacaactatggaccagcaggaagagccataggagttgatttgttaaacaatccagatgctgttgcaaatgatgcagtcgtttcattcaagacagccttgtggttctggatgacggcccagagaccaaagccatcggcccattttgttattactggtaaatggagaccaacaggagctgatttgtctgctggtcgtgtctctggctatggtttaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="66218" stop="64195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65918" g_stop="65622" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65621" i_stop="64948" i_length="674">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64947" g_stop="64794" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="451" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64793" i_stop="64718" i_length="76">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64717" g_stop="64495" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="674" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U584901" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65918" e_stop="65622"/>
          <exon e_start="64947" e_stop="64794"/>
          <exon e_start="64717" e_stop="64495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGGTAAAAACTAAATGAAGAACAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGTCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCGGTACTATTTTCTTAAGTAATTATCCCTAGCTTGTTACAAGAACAAATAAAAGTCATTTTTACACTTTCTTTTGAGATCTTATTGACAACTTTTTAAGCAACCTAACATCCACAACCATGTACACAGGGGTGTCAAATGAGCGGCTTGGGTTGAAATTAGAAATATTTAAATGAGTTCAATAGAAACCGGGTTGAGTCTTGATCCACCCAAATTTATTTGAGCTCAAATGGGCTAAAAAACGGGTTGGGTCTTGACTCGTCCAATTTGACCCGATTAATCTCAATAATTTAACATATTGATATTTAACTTTTATAATCACAATTTTTGAATTTCCGCTCAAGAATTTTTTGTTAAAAAAGTAACAAATTGATAGACAAATCCATTCATATCTTCAATATAGGAACATATCTTAATAAAAAAATTTAAAACGAGTTGAAATTAGAAATTGAGTTGGACTCAATTGAGATATCTTTTCAAATAGGTTAAGCTTGAATAAGTTGATAATCAATCCAATTCAAATTATTTTAACCCAACCATTAAAATTCTGAGCGAGTTAGCTTCACTTTTGACACCCCTAAATTTCTCATGATAAAATTAACGTTATTTCCGAGTATGAAATCAATTGTTAGTAATGTAATACGAGATATAAAAGTATGAATTATGTTGATGATTAGGGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTAGTAAGTTTTGTTTTAATTTTTTCTACTTTCCACACATAATAGTAGGGTCTAAACTCATGAATTTAGTGATATGCAGCAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCTATGGTTTAATCACC</genome_strand>
        <mrna_strand>AACTTGGTAAAAACTAAATGAAGAACAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGGCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTACAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTA............................................................................CAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCTATGGTTTAATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577871" ref_strand="+" ref_description="SGN-U577871 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|544010|sp|Q05540|CHIB_SOLLC (e_value=2e-145) RecName:; (*ATH) AT3G12500.1 (e_value=3e-88) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05540|CHIB_SOLLC (e_value=1e-146) Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17; ">
      <seq>gccggggaaacactatctaatgcataagaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttcccctttgtttacgtagttcttgcatttacaatttgcactagtatatgagggaagcaattttaataattcaagtggctacagggagtgtatttagagggttaaaagtgtattctttctactgacttttagtagtagttgcacaaaaggcagtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76322" stop="74236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76021" g_stop="75694" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="334" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75437" g_stop="75329" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="443" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74536" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="1133" r_length="690" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U577871" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1127</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76021" e_stop="75694"/>
          <exon e_start="75437" e_stop="75329"/>
          <exon e_start="75225" e_stop="74536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACT</genome_strand>
        <mrna_strand>GAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593805" ref_strand="+" ref_description="SGN-U593805 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|544010|sp|Q05540|CHIB_SOLLC (e_value=2e-37) RecName:; (*ATH) AT3G12500.1 (e_value=5e-22) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05540|CHIB_SOLLC (e_value=2e-38) Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17; ">
      <seq>agaacagagagacgctaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76297" stop="74414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75997" g_stop="75730" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75729" i_stop="75050" i_length="680">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75049" g_stop="74714" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="604" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U593805" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75997" e_stop="75730"/>
          <exon e_start="75049" e_stop="74714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>AGAACAGAGAGACGCTAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592828" ref_strand="+" ref_description="SGN-U592828 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|544010|sp|Q05540|CHIB_SOLLC (e_value=4e-20) RecName:; (*SWP) sp|Q05540|CHIB_SOLLC (e_value=2e-21) Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17; ">
      <seq>ggggaaacactatctaatgcataagaaagaacagagagaagcaaaaaagaaatggaggttttgagatcacaaatggtattacgttgtgtctttttgttgttcccaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcaagcaattggacaggacttagttaacaaccctgacntagtagctacagatgcaactgtatcttttaaaacagcaatatngnnnctggatgancgcacaaggcantaanccatcatgccncgatgttatcacagggcantggacgccatcngccgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="76322" stop="74745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76024" g_stop="75808" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75807" i_stop="75206" i_length="602">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75205" g_stop="75045" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="377" r_length="160" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U592828" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76024" e_stop="75808"/>
          <exon e_start="75205" e_stop="75045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATAT-GGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCC</genome_strand>
        <mrna_strand>GGGGAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGGTTTTGAGATCACAAATGGTATTACGTTGTGTCTTTTTGTTGTTCCCAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--GCAAGCAATTGGACAGGACTTAGTTAACAACCCTGACNTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATNGNNNCTGGATGANCGCACAAGGCANTAANCCATCATGCCNCGATGTTATCACAGGGCANTGGACGCCATCNGCCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581507" ref_strand="+" ref_description="SGN-U581507 Tomato 200607#2 [59 ESTs aligned] (*GB) gi|544007|sp|Q05539|CHIA_SOLLC (e_value=7e-149) RecName:; (*ATH) AT3G12500.1 (e_value=1e-74) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05539|CHIA_SOLLC (e_value=5e-150) Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3; ">
      <seq>aagccagaggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79649" stop="77965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79349" g_stop="79053" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="394" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78821" g_stop="78266" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="950" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U581507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79349" e_stop="79053"/>
          <exon e_start="78979" e_stop="78883"/>
          <exon e_start="78821" e_stop="78266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAA</genome_strand>
        <mrna_strand>AAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578942" ref_strand="+" ref_description="SGN-U578942 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|544007|sp|Q05539|CHIA_SOLLC (e_value=4e-135) RecName:; (*ATH) AT3G12500.1 (e_value=4e-65) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05539|CHIA_SOLLC (e_value=2e-136) Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3; ">
      <seq>gttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacagtaagacaattcaatagaatatcaacatttggaatcattagtaatattcttttttatgcagccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcatgaacggtcaatttgaacgtgggatgggtccgaatactgcagcggaaagtcgaattggatctaacaggaggtattgtgccacgaagaatgttcctactggtgaaaatttggactgtaacaatcaaaagaagttcgcccagggaaaagcgtctttagttaaatatagagagtgaacgcaaattatgtttatgtattatgaagggaagtctataagttatatttggatgtaaacaataaggggattgtgtatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79630" stop="78032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79330" g_stop="79053" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78979" g_stop="78332" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="926" r_length="648" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U578942" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79330" e_stop="79053"/>
          <exon e_start="78979" e_stop="78332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCC</genome_strand>
        <mrna_strand>GTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATGAACGGTCAATTTGAACGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATCTAACAGGAGGTATTGTGCCACGAAGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAAGTTCGCCCAGGGAAAAGCGTCTTTAGTTAAATATAGAGAGTGAACGCAAATTATGTTTATGTATTATGAAGGGAAGTCTATAAGTTATATTTGGATGTAAACAATAAGGGGATTGTGTATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593206" ref_strand="+" ref_description="SGN-U593206 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|544007|sp|Q05539|CHIA_SOLLC (e_value=4e-61) RecName:; (*ATH) AT3G12500.1 (e_value=6e-22) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05539|CHIA_SOLLC (e_value=3e-62) Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3; ">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtaatttggatcatccttcttagcattgtaatttataggtaacaattgaattatatcattcgctcttttgcaggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacagtaagacaattcaatagaatatcaacatttggaatcattagtaatattcttttttatgcagccaatctaactacgaacgagctggacaaggtattggtgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="79640" stop="78478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79340" g_stop="78778" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U593206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79340" e_stop="78778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598791" ref_strand="+" ref_description="SGN-U598791 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328757|emb|CAO22793.1| (e_value=4e-70) unnamed; (*ATH) AT2G17650.1 (e_value=9e-67)  Symbol: None | AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501; identical to cDNA adenosine monophosphate binding protein 2 AMPBP2 (AMPBP2)... ; (*SWP) sp|Q00594|ALKK_PSEOL (e_value=2e-16) Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK; ">
      <seq>gggattggtagtttgccctgcaaaccacgtaccattgacacctctaagttttttggaacgtgctgcatttgtttaccgcaaaaacatagccttaatttatggaaacataagttattcatgggaagaattacatggaagatgtatcaaccttgcatctgctctttctcaacttggagtttcatctggtgatgttgtggcaacggtggcacctaatgtagcagcacaatatgagctacattttggtgtaccaatggctggtgcagtcctttctgcactcaacacaatgctagatgccaccacattggctcaaaaactccaacaattggaggccaaaatcatttttgtatactctgatttcattgaactagtgcttcaagcacttgccattcttcaagaaaaagacaaatcttgtctaattgtcttaatccatgaaggaaacaatgtaacaaaaccaccagtgtcatcatcagggccatcaaaaattctggattaccaaacacttcttgaaatggggcagcctaatttcaagattatgcatccgaaaaatgaatttgatccgatttcgatcaattttacttctggatcaacagggaagcctaaaggggctgtgtatagccatagagctgcttatttgaatacaattgctgacatttttcgatacgaaatgggaaaaagccctgtttttctctggacagtggatatgtttcgatgcaacgggtggtgtctcccctggacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="84110" stop="88038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84410" g_stop="84602" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84603" i_stop="87190" i_length="2588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87191" g_stop="87738" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="740" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-U598791" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84410" e_stop="84602"/>
          <exon e_start="87191" e_stop="87738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTTGTAAGTCTAATTTCATCCTTTCACTTGCTCCTCCATCTTCAATATATATTTGTGTACTACACAAACATATTTATTCTGCTCATGCTTCAGACAATCTGAATAATTCTATATACACATATATAGGTGCGCCATTTATATAGCCGAGAGTAGTTGCACTTGATTTATCTCCATTCAAGATCTATGTTTTTTTTATTTTCTTTAAACTCTTTCGTAACATAAATATGATTAAGAACTCCCTGACGTGAAAATAATATTTTACACGTATAAACTAGACTAGAATTAGATCTAGTTCTTTGGACTTTAAATATACTATGATTTTGATCCTTTTAATTTCATGCATGCCAATTATTTTCTTTTAAGGCAAAAGTTAATTAGTAGAAGTGAGCCATTAGAGACTTGATATATTAACCAAGTCAACAGGCGCATTCATTCACCCAAATTAATTGATGCGTTGAAGAAGGGTTATTAATTATCATTTTTTTTTACGTTTACATTTACACTTATAATAAAAAGAAGAATCGACAACAAACTTTAATTCCTCCACTTAATTCTTAGTTGATAAAAGCATAATAATTATGTCCCTTGCGAAGATAGACTTGACTTACGTATATGGTTCTACTTCTCTCATATTTATTATCTCACGCATTGACTTGACCAGCTAGATGTTAAAGAATGAAAAAATTCATATCGATAATTAAAGAAATGAATGGTTAGATTTAAATAATTCTCTTATTTGAGATAGTTTTTAGGGTATGACTTACACCTAGCTGTTAGAACCAAATTTTAAAGTTGTCCACGCTTAAAATGTTCAAAAACCTGAGCTTGAGGTGGATGTTAAAGAATGAAAATTTTTTCATCGATGATTAATGAGATGAATAATCTTCTTATAAATCTAAGACAATTCTTTATCCTTTAAATTAATGTTTAGAGCATGATAAGTCCAAGATCTAATTTTACACTAACTACTTTATTAGTAAGTCATTGTATAAGATTATAGGAATATATGTTGAGGGGTCTTTTTCCATTAACAAACCATTTCTTGTCTTCTTACTACATATTCGAAACCATTTTGAGTGCTCATACTTGTAATAGTAACGACAAAACAGCCCCCTCGAGTTTCATTGCTCTTATATTTCCTTTGGCTTTCTCTCTATAAAACTCTGGAAAAACGTTCATAACTTGCGTAATGGTGTCAAAATTAGGGGCTGAATGAGGACAAATTCACAATGTCACGTAAAAACGATTAGTTAATTATAAGTCATGTAATATAGTAATGTAATTAGATGAAAATTTGTGTTGTCTTAACTCACATACTAAATATGTAATGAACACATAGATTATATATACTATATATTATAATATATACTAAGTACTAACAATATATATATATATATATTTATATATAAATTACTATTTCATGCTTTAAAAACGATAAAAATAGGAGCAATCATGTGTAACGGTGTGAATACACGTTTTGACTTCTTTTTTTCTTGTTTGAGTGCTTTATTATTTTTAAGAAAAAAGTTTCTATTTTCATTCTTTTTTATTTAACAAATGAGCTAGACCACAAGTCTTCGTCTCAAATTGTAATTAAATACGTGTCACATCAAATTTAATATTTTAGAGCAGAGCATATATGCACATGATGATACACCTTGAAGGGGGAATTTAATTCTTTTCTTATATTAGTGTTATATTATAATCAAAACTCCTTAGTACTTGTATCTTTTTTTCCCTCATTCTGCATGAGCCTGTCCTGGCTGTGATTTAAAATTGTACAATTTATTGACTTTGTCACGTTTAGCAATGTGTTAAAGACCCACGTTATGAAAAATAAATAAATTGATGACTAGGTACAATTGATATGCGTAATTACGACCAGAGGAAAACATCTAGATACATGGAACTTGCTCAATAGTACTAAATAAGTCAATGGACTTAAATATTGTTTGGAAGCTCTCTCGAAATCATATTATTTAATTTAGTTTGACATAAATATTGAATATACATAGATAGTTTGTTATGTCTCTCGTATAACAATGTTGGGGATGGAATATGGATGCACAATTAAAATTACGGTGTAACCTAATAGTTTTAGCTCTTTCTTATATACATGTTCAAATTCTAGTTAGTATTAAATTCGAACAGATAATACTCATATGTTCATTATTATTTTATCTAGTTAATATTAACAAATCAAGAAAGAGTTATTATTTACTTTTAATATCACTTTTCATCGAAAATCTTAGTAGCTCAATTGATTGGCTACTTGAACTCTCAGCTTGTTGATAAAAATTTGATTCTCCATATAGTAATCTACTCCCCATTTCTTTTTCCCCTTCCCCTTCCCCTGCCTTCAATTTTCCTTTTTTTTTCTTCTAAAAAGATAATATATATCACTCTTCATTGAATAATACAAGTTCTTAGATTATATTGTGAATCCATAAACTTCAAATTCTAGTTGTTACGCTGAGTCCAAACCTTCTTTCGTTTTTCTCTTTGCTCTTATTTGTAGCTTATATTGTCATACGTAACTAATTAAAACAAGCTTAATTTATGCGCTTATTAATCTTAACTAATACAAACAGGTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCTGGACAATTGC</genome_strand>
        <mrna_strand>GGGATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCTGGAC-ATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601166" ref_strand="+" ref_description="SGN-U601166 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328757|emb|CAO22793.1| (e_value=3e-19) unnamed; (*ATH) AT1G20560.2 (e_value=2e-17) |; ">
      <seq>cgtgaaggggttcacaacattatgatggaagaagttgatgtaaaagatccagagagtatgaaaagtgtaccagcagatggaaaaatcacaggggaaatcatgtttagaggcaatgctatgatgatggggtacttgaaagattcatcaagaactgaagaagcttttgagggagggtggtataggactaaagatcttggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="87782" stop="88581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88082" g_stop="88281" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-U601166" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88082" e_stop="88281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAAGGGGTTCACAACATTATGATGGAAGAAGTTGATGTAAAAGATCCAGAGAGTATGAAAAGTGTACCAGCAGATGGAAAAACCACAGGGGAAATCATGTTTAGAGGCAATGCTATGATGATGGGGTACTTGAAAGATTCATCAAGAACTGAAGAAGCTTTTGAGGGAGGGTGGTATAGGACTAAAGATCTTGGTGT</genome_strand>
        <mrna_strand>CGTGAAGGGGTTCACAACATTATGATGGAAGAAGTTGATGTAAAAGATCCAGAGAGTATGAAAAGTGTACCAGCAGATGGAAAAATCACAGGGGAAATCATGTTTAGAGGCAATGCTATGATGATGGGGTACTTGAAAGATTCATCAAGAACTGAAGAAGCTTTTGAGGGAGGGTGGTATAGGACTAAAGATCTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584932" ref_strand="+" ref_description="SGN-U584932 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157328757|emb|CAO22793.1| (e_value=5e-32) unnamed; (*ATH) AT1G20560.2 (e_value=4e-27) |; (*SWP) sp|A7GU88|MENE_BACCN (e_value=2e-14) 2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE; ">
      <seq>tgaaggatcgcgctgttgacgtagtcaaaactgatgggaaaactataagcacacttgaaattgaaggtgttttgattaggcatcctatggttttggaagttgcagttgtagcaagatgtgatgatgttcttggagagaccccttgtgcttttgtgaaactgaaaaaagggtgttttatgactgatgaagaaattatcaagttttgtgaagattggctgcaggattacatggttcctaaggcagtaatctttggtgatttaccattcaattcttcagggaaaatacagaaatttatacttagggacaaggtcaacaatgcaatgaagttgtgtctacaagttgggtgcaactcagttggcgagctgcccacaccttcatcctagtggtggggattcgaatttcgatatattccctccccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="88008" stop="89030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88308" g_stop="88730" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-U584932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88308" e_stop="88730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCAT</genome_strand>
        <mrna_strand>TGAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578511" ref_strand="+" ref_description="SGN-U578511 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157329815|emb|CAO42645.1| (e_value=1e-130) unnamed; (*ATH) AT3G51440.1 (e_value=6e-119)  Symbol: None | strictosidine synthase family protein, similar to hemomucin (Drosophila melanogaster)(GI:1280434), strictosidine synthase (Rauvolfia serpentina)(SP:P15324); contains strictosidine synthase domain PF03088 | chr3:19100060-19101618 FORWA... ; (*SWP) sp|Q9D7N9|APMAP_MOUSE (e_value=7e-42) Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap; ">
      <seq>ataggaaccaaattttatttttttgttatgataagaatggaaacaaagaggaatacgagtcaacacataccttcttctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgatttacaaggaaatccactggaacactattatgatgaggatttgacaatggtgtcaagtggcattaagattggtgatcatttgtactgtggctctgttaagtctccgtatatactacgcctcaatctcaaacaatatcctgccgtttaaacttcataaacaaaaatgtaagtgtttgatttcaaaaataatgggtgtatttgttagtacaagtatattcgttcaattttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95373" stop="98816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95673" g_stop="96255" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97559" g_stop="97869" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="894" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97946" g_stop="98078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="895" r_stop="1027" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98163" g_stop="98516" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1380" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-U578511" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1381</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95673" e_stop="96255"/>
          <exon e_start="97559" e_stop="97869"/>
          <exon e_start="97946" e_stop="98078"/>
          <exon e_start="98163" e_stop="98516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAACCAAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</genome_strand>
        <mrna_strand>ATAGGAACCAAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTC-AAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592849" ref_strand="+" ref_description="SGN-U592849 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aatacgagtcaacacatttcttcttctgggctgactatttgttattatgtgaaatgcccatccttcatctgctcttctattcacactaaccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctattcttatttcactaataatacccgttattctaggtacgggtttctatcaactcgattccttcgacccgggttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="+" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="95424" stop="96357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95724" g_stop="96057" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="+" ref_id="SGN-U592849" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95724" e_stop="96057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTA</genome_strand>
        <mrna_strand>AATACGAGTCAACACATTTCTTCTTCTGGGCTGACTATTTGTTATTATGTGAAATGCCCATCCTTCATCTGCTCTTCTATTCACACTAACCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTCTTATTTCACTAATAATACCCGTTATTCTAGGTACGGGTTTCTATCAACTCGATTCCTTCGACCCGGGTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588040" ref_strand="+" ref_description="SGN-U588040 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157358550|emb|CAO66226.1| (e_value=8e-23) unnamed; (*ATH) AT1G20560.1 (e_value=6e-22)  Symbol: None | AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501; identical to adenosine monophosphate binding protein 1 AMPBP1 (AMPBP1) GI:2... ; ">
      <seq>ggttgtgtatggttcttctgttaaattcacttgggaagagactcataatagatgtctaaagatggcttctgctctgtctcagttgggtatttctcgtggtgatgttgtaagttcgatttctccgctttagaatattacgtctaaatgaatggttaatagtatatggctaaactttttcatctttggaataaacttctactaacattttagtttgatcacatatgaaaagtttttaaatctgtgatgtctcatggttgttagtgtaaatgcttgaataggttgcaacgctggctcctaatgtacccgcagtgcaagagttgcattttgcggttccaatggcaggagcagtgctttgtacgttgaatacacgtcatgattcagctatggtatctgttctcctgaggcattcagaagctaagatcattttcgttgaccagcagttgtttgatgttgctcaaagagcactggatcttcttgcagatgctaaaacaaaacctcttctaatattaatccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="102835" stop="101721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102536" g_stop="102021" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U588040" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102536" e_stop="102021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</genome_strand>
        <mrna_strand>GGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAAGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588041" ref_strand="+" ref_description="SGN-U588041 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157330817|emb|CAO49786.1| (e_value=3e-54) unnamed; (*ATH) AT2G17650.1 (e_value=7e-49)  Symbol: None | AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501; identical to cDNA adenosine monophosphate binding protein 2 AMPBP2 (AMPBP2)... ; ">
      <seq>gcatgaatccttttttcaatatttcaagattgaatgggttgttacatgctctaaacagagttcgagttcaccccattttgagtcagaggtctcgttatttgtcccaaattattcatgagaatgttgaaactcacccatgggaatccatggagggactaatgaggtgttcagctaattatttccctttaacacccattagtttcttggacagagctgctaaggtttttagagacaggacttctgttgtgtatggttcttctgttaaattcacttgggaagagactcataatagatgtctaaagatggcttctgctctgtctcagttgggtatttctcgtggtgatgttgttgcaacgctggctcctaatgtacccgcagtgcaagagttgcattttgcggttccaatggcaggagcagtgctttgtacgttgaatacacgtcatgattcagctatggtatctgttctcctgaggcattcagaagctaagatcattttcgttgaccagcagttgtttgatgttgctcaaggagcactggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="103076" stop="101765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102777" g_stop="102431" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102430" i_stop="102259" i_length="172">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102258" g_stop="102065" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="541" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U588041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102777" e_stop="102431"/>
          <exon e_start="102258" e_stop="102065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCT</genome_strand>
        <mrna_strand>GCATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTT............................................................................................................................................................................GTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601102" ref_strand="+" ref_description="SGN-U601102 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157330777|emb|CAO49648.1| (e_value=3e-104) unnamed; (*ATH) AT2G17650.1 (e_value=3e-95)  Symbol: None | AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501; identical to cDNA adenosine monophosphate binding protein 2 AMPBP2 (AMPBP2)... ; (*SWP) sp|Q0P4F7|ACSF2_DANRE (e_value=2e-31) Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2; ">
      <seq>ggagtacatcacttatatggactaacagagacatatggtccaggtacatataatttgtggaggcctgagtgggattctttaccaccaaacgaaaagtacaaactgaaagcaagacaaggggtgcaacatctttgttcagaggcagtggatgtgatggaccctcttacaatggagaaagtaccagaagatggtaaaacaataggtgaaattatgtttagagggaatacagtaatgagtgaatatctgaaagatgaagaagcaacaaaagaagcttttaaaggtggatggtttcatagtggtgatttggctgtgaaacatccagacggatacatagaagttaaggacagattgaaagatatcgtaatctctggtggagaaaacataagcacaatagaggtggaaagagttttgtatagtcatccagcagtttttgaaacagcagtggttgcgcgaccagataatcactgggggcaaacaccttgtgcatttgtgaagttgaaggatggttcaaatgttagtgagcaagaaattatcaacttctgcagggataacttgcctcattacatggcacctcgaacagtcatatttcaacatctccctaaaacttcaacaggcaaaatacaaaaattcattctaagagagaaagccagagccttgggaagtctttgctgaaggaaatccgtttttcttgctgtccgattctctttcttctaattttctacaactgaaagacttctatctatgctgtaatctgtttttcttaccttttaaagattgaagtctcctcaaaaggtgtatgctaatgatctctatgttgtacaagctggacatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0238L13-qLo3S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0238L13.1" temp_strand="-" temp_description="C02HBa0238L13.1  AC215431.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0238L13 sequenced_by:kribb upload_account_name:korea">
        <position start="109288" stop="107856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108989" g_stop="108156" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0238L13.1" gen_strand="-" ref_id="SGN-U601102" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0238L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108989" e_stop="108156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGT</genome_strand>
        <mrna_strand>GGAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="61622" PGL_stop="60737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61622" e_stop="60737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="61622" e_stop="60737" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61622" stop="60737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTAGGGAAGCGACTAGATTATTAGGAGTTCTGAGTGAGGAAGGCTACAAGCCTGATTGCTATGTT</gDNA_template>
            <first_frame> R  T  L  I  L  S  S  Q  K  E  E  V  V  T  T  R  R  R  N  S  *  E  N  G  E  I  T  T  F  L  K  V  S  *  L  C  C  K  H  S  H  Q  N  S  I  S  I  P  I  P  I  P  T  S  N  L  K  T  P  L  L  S  Q  K  I  T  I  T  Q  E  K  T  H  I  N  Y  *  T  P  A  S  I  I  Y  S  S  L  *  F  N  I  S  F  R  C  *  N  P  F  Q  F  S  D  F  Q  Y  Q  K  P  L  Y  R  Q  Q  I  L  *  C  S  S  S  I  I  F  L  Q  F  N  S  P  R  F  N  L  F  P  *  S  H  D  Q  G  S  P  S  F  L  P  *  Q  V  Y  I  P  C  S  P  R  P  I  L  *  V  C  *  P  F  F  I  P  C  S  S  G  S  *  S  Y  D  Y  Q  W  F  P  S  *  *  G  L  H  R  H  C  C  E  D  P  L  L  F  R  P  R  R  A  S  H  *  A  S  E  R  T  F  L  Q  R  L  S  P  *  Y  I  Y  L  *  F  Y  Y  *  A  F  V  Q  E  Q  A  F  E  Y  H  E  *  L  Y  *  R  N  E  G  R  F  *  Y  K  T  *  S  C  Y  I  Y  N  Y  D  *  Q  C  L  *  *  *  K  S  *  G  S  D  *  I  I  R  S  S  E  *  G  R  L  Q  A  *  L  L  C  </first_frame>
            <second_frame>  E  P  *  F  C  P  H  R  R  K  K  W  L  Q  Q  D  E  E  T  A  E  K  M  G  K  L  P  P  S  L  R  S  A  N  F  A  V  N  T  L  I  K  T  P  S  P  S  P  S  P  S  P  P  P  T  S  K  P  H  Y  Y  P  K  K  S  Q  S  P  K  K  K  P  T  S  I  T  E  P  Q  L  P  S  S  I  L  A  F  D  S  T  S  L  S  D  A  K  T  L  F  N  S  L  I  S  S  T  R  N  P  S  T  D  N  K  F  Y  N  A  V  L  Q  S  F  S  S  N  S  T  L  Q  D  S  I  F  F  L  N  H  M  I  K  V  H  P  P  F  S  P  D  R  F  T  Y  H  V  L  L  V  Q  S  C  K  S  V  D  L  S  L  S  P  V  H  Q  V  L  N  L  M  T  T  N  G  F  P  P  N  K  V  S  T  D  I  A  V  R  T  L  C  S  S  G  H  E  E  Q  A  I  E  L  V  K  E  L  S  S  K  D  S  P  P  D  T  Y  T  Y  N  F  I  I  R  H  L  C  K  N  R  P  L  S  T  M  N  N  F  I  K  E  M  R  E  G  F  D  I  K  P  D  L  V  T  Y  T  I  M  I  D  N  V  C  N  S  K  N  L  R  E  A  T  R  L  L  G  V  L  S  E  E  G  Y  K  P  D  C  Y  V </second_frame>
            <third_frame>   N  P  N  F  V  L  T  E  G  R  S  G  Y  N  K  T  K  K  Q  L  R  K  W  G  N  Y  H  L  P  *  G  Q  L  T  L  L  *  T  L  S  S  K  L  H  L  H  P  H  P  H  P  H  L  Q  P  Q  N  P  I  I  I  P  K  N  H  N  H  P  R  K  N  P  H  Q  L  L  N  P  S  F  H  H  L  F  *  P  L  I  Q  H  L  F  Q  M  L  K  P  F  S  I  L  *  F  P  V  P  E  T  P  L  Q  T  T  N  F  I  M  Q  F  F  N  H  F  P  P  I  Q  L  S  K  I  Q  S  F  S  L  I  T  *  S  R  F  T  L  L  S  P  L  T  G  L  H  T  M  F  S  S  S  N  L  V  S  L  L  T  F  L  Y  P  L  F  I  R  F  L  I  L  *  L  P  M  V  S  L  L  I  R  S  P  Q  T  L  L  *  G  P  F  A  L  P  A  T  K  S  K  P  L  S  *  *  K  N  F  P  P  K  T  L  P  L  I  H  I  L  I  I  L  L  L  G  I  C  A  R  T  G  L  *  V  P  *  I  T  L  L  K  K  *  G  K  V  L  I  *  N  L  I  L  L  H  I  Q  L  *  L  T  M  F  V  I  V  K  I  L  G  K  R  L  D  Y  *  E  F  *  V  R  K  A  T  S  L  I  A  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61612" stop="60737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCPHRRKKWLQQDEETAEKMGKLPPSLRSANFAVNTLIKTPSPSPSPSPPPTSKPHYYPKKSQSPKKKPTSITEPQLPSSILAFDSTSLSDAKTLFNSLISSTRNPSTDNKFYNAVLQSFSSNSTLQDSIFFLNHMIKVHPPFSPDRFTYHVLLVQSCKSVDLSLSPVHQVLNLMTTNGFPPNKVSTDIAVRTLCSSGHEEQAIELVKELSSKDSPPDTYTYNFIIRHLCKNRPLSTMNNFIKEMREGFDIKPDLVTYTIMIDNVCNSKNLREATRLLGVLSEEGYKPDCYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="65918" PGL_stop="64249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65918" e_stop="65622"/>
            <exon e_start="64947" e_stop="64794"/>
            <exon e_start="64717" e_stop="64249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.989" acc_prob="0.920" e_score="0.994"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="65918" e_stop="65622" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65621" i_stop="64948" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="64947" e_stop="64794" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.920">
            <gDNA_intron_boundary i_start="64793" i_stop="64718" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="64717" e_stop="64249" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65918" stop="65622"/>
              <exon start="64947" stop="64794"/>
              <exon start="64717" stop="64495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64511" stop="64249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTGGTAAAAACTAAATGAAGAACAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGTCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCG : GGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTA : CAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCTATGGTTTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATT</gDNA_template>
            <first_frame> N  L  V  K  T  K  *  R  T  K  L  C  F  G  V  L  F  C  F  V  C  C  L  Q  E  E  D  *  H  K  M  L  V  L  L  L  V  K  T  Y  L  R  E  C  Y  C  I  V  M  M  P  I  V  M  P  K  D  F  T  L  M  M  L  L  *  Q  L  Q  G  P  L  L  L  L  E  L  L  E  T  P  T  L  V  R  R  K  S  L  H  F  W  H  K  L  L  L  K  Q  P  :  G  G  G  E  Q  L  R  M  V  H  F  H  G  D  I  A  S  S  K  N  K  V  A  H  Q  I  T  V  L  Q  I  N  S  G  L  V  L  L  V  K  N  T  L  V  E  V  P  S  K  Y  P   : T  T  T  T  M  D  Q  Q  E  E  P  *  E  L  I  C  *  T  I  Q  M  L  L  Q  M  M  Q  S  F  H  S  R  Q  P  C  G  S  G  *  R  P  R  D  Q  S  H  R  P  I  L  L  L  L  V  N  G  D  Q  Q  E  L  I  C  L  L  V  V  S  L  A  M  V  *  S  P  T  *  L  M  E  E  *  N  V  E  K  V  L  I  Q  K  W  R  I  E  L  G  F  T  R  D  T  W  S  Q  S  W  G  Q  F  G  L  C  *  T  N  A  F  W  P  V  K  *  T  T  T  *  S  N  N  V  L  L  P  A  I  V  I  G  E  K  Y  V  I  Q  N  I  *  V  I  *  *  N  K  V  I   </first_frame>
            <second_frame>  T  W  *  K  L  N  E  E  Q  N  Y  V  L  G  F  C  F  V  L  C  V  V  Y  K  R  R  I  D  T  R  C  W  C  S  Y  *  *  R  H  I  *  E  N  A  I  A  S  *  *  C  Q  L  *  C  Q  R  I  L  H  L  *  C  F  Y  N  S  C  K  V  L  C  C  F  W  N  Y  W  K  H  Q  H  S  *  E  G  N  R  C  I  F  G  T  N  F  S  *  N  N  R :   G  V  G  N  S  S  G  W  S  I  F  M  G  I  L  L  Q  A  R  T  R  *  P  T  R  L  L  C  C  K  S  T  V  A  L  C  S  W  *  K  I  L  W  S  R  S  H  P  N  I  L  :  Q  L  Q  L  W  T  S  R  K  S  H  R  S  *  F  V  K  Q  S  R  C  C  C  K  *  C  S  R  F  I  Q  D  S  L  V  V  L  D  D  G  P  E  T  K  A  I  G  P  F  C  Y  Y  W  *  M  E  T  N  R  S  *  F  V  C  W  S  C  L  W  L  W  F  N  H  Q  H  N  *  W  R  N  R  M  W  K  R  F  *  S  K  N  G  E  *  N  W  V  L  Q  E  I  L  G  V  N  P  G  V  N  L  D  C  A  K  Q  T  P  F  G  Q  *  N  K  L  L  H  S  Q  I  M  Y  F  F  Q  P  *  *  L  V  R  N  M  L  S  K  I  F  K  L  Y  N  K  T  K  L  Y  </second_frame>
            <third_frame>   L  G  K  N  *  M  K  N  K  I  M  F  W  G  F  V  L  F  C  V  L  S  T  R  G  G  L  T  Q  D  V  G  A  L  I  S  K  D  I  F  E  R  M  L  L  H  R  N  D  A  N  C  N  A  K  G  F  Y  T  Y  D  A  F  I  T  A  A  R  S  F  A  A  F  G  T  T  G  N  T  N  T  R  K  K  E  I  A  A  F  L  A  Q  T  S  L  E  T  T   : G  G  W  G  T  A  P  D  G  P  F  S  W  G  Y  C  F  K  Q  E  Q  G  S  P  P  D  Y  C  V  A  N  Q  Q  W  P  C  A  P  G  K  K  Y  F  G  R  G  P  I  Q  I  S  Y :   N  Y  N  Y  G  P  A  G  R  A  I  G  V  D  L  L  N  N  P  D  A  V  A  N  D  A  V  V  S  F  K  T  A  L  W  F  W  M  T  A  Q  R  P  K  P  S  A  H  F  V  I  T  G  K  W  R  P  T  G  A  D  L  S  A  G  R  V  S  G  Y  G  L  I  T  N  I  I  N  G  G  I  E  C  G  K  G  S  N  P  K  M  E  N  R  I  G  F  Y  K  R  Y  L  E  S  I  L  G  S  I  W  T  V  L  N  K  R  L  L  A  S  K  I  N  Y  Y  I  V  K  *  C  T  S  S  S  H  S  D  W  *  E  I  C  Y  P  K  Y  L  S  Y  I  I  K  Q  S  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65901" stop="65622"/>
                    <exon start="64947" stop="64794"/>
                    <exon start="64717" stop="64330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKNKIMFWGFVLFCVLSTRGGLTQDVGALISKDIFERMLLHRNDANCNAKGFYTYDAFITAARSFAAFGTTGNTNTRKKEIAAFLAQTSLETTGGWGTAPDGPFSWGYCFKQEQGSPPDYCVANQQWPCAPGKKYFGRGPIQISYNYNYGPAGRAIGVDLLNNPDAVANDAVVSFKTALWFWMTAQRPKPSAHFVITGKWRPTGADLSAGRVSGYGLITNIINGGIECGKGSNPKMENRIGFYKRYLESILGSIWTVLNKRLLASKINYYIVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="76024" PGL_stop="74536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76024" e_stop="75808"/>
            <exon e_start="75205" e_stop="75045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="0.972"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="76024" e_stop="75808" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="75807" i_stop="75206" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="75205" e_stop="75045" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76024" stop="75808"/>
              <exon start="75205" stop="75045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATG : CTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCC</gDNA_template>
            <first_frame> Q  *  T  L  S  N  A  *  E  R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y   : A  G  Q  A  I  G  Q  D  L  V  N  N  P  D  L  V  A  T  D  A  T  V  S  F  K  T  A  I  W  F  W  M  T  A  Q  G  N  K  P  S  C  H  D  V  I  T  G  Q  W  T  P  S  A  A </first_frame>
            <second_frame>  S  K  H  Y  L  M  H  K  K  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  :  L  G  K  Q  L  D  K  T  *  L  T  T  L  T  *  *  L  Q  M  Q  L  Y  L  L  K  Q  Q  Y  G  S  G  *  P  H  K  A  I  S  H  H  A  T  M  L  S  Q  G  N  G  R  H  Q  P   </second_frame>
            <third_frame>   V  N  T  I  *  C  I  R  K  N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  C :   W  A  S  N  W  T  R  L  S  *  Q  P  *  L  S  S  Y  R  C  N  C  I  F  *  N  S  N  M  V  L  D  D  R  T  R  Q  *  A  I  M  P  R  C  Y  H  R  A  M  D  A  I  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76000" stop="75808"/>
                    <exon start="75205" stop="75045"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75997" e_stop="75730"/>
            <exon e_start="75049" e_stop="74714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="75997" e_stop="75730" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75729" i_stop="75050" i_length="680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75049" e_stop="74714" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75997" stop="75730"/>
              <exon start="75049" stop="74714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTG : CCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</gDNA_template>
            <first_frame> R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  T  G  D  D  T  A  R  K  K  E  I   : A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  </first_frame>
            <second_frame>  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  M  H  S  *  L  Q  P  I  H  F  Q  V  L  V  L  P  V  M  I  L  R  V  R  R  K  L  :  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I </second_frame>
            <third_frame>   N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  *  C  I  H  S  C  S  Q  F  I  S  R  F  W  Y  Y  R  *  *  Y  C  A  *  E  G  N  C :   R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75997" stop="75730"/>
                    <exon start="75049" stop="74850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76021" e_stop="75694"/>
            <exon e_start="75437" e_stop="75329"/>
            <exon e_start="75225" e_stop="74536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="76021" e_stop="75694" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75693" i_stop="75438" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75437" e_stop="75329" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75328" i_stop="75226" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75225" e_stop="74536" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76021" stop="75694"/>
              <exon start="75437" stop="75329"/>
              <exon start="75225" stop="74536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG : GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG : GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACT</gDNA_template>
            <first_frame> *  T  L  S  N  A  *  E  R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  T  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  T   : G  G  S  L  S  A  D  G  P  F  A  G  G  Y  C  F  V  R  E  G  N  Q  M  G  S  G  F  Y  G  R  G  P  I  Q  L  T  G :   Q  S  N  Y  D  L  A  G  Q  A  I  G  Q  D  L  V  N  N  P  D  L  V  A  T  D  A  T  V  S  F  K  T  A  I  W  F  W  M  T  A  Q  G  N  K  P  S  C  H  D  V  I  T  G  Q  W  T  P  S  A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  D  I  L  I  S  P  L  F  T  *  F  L  H  L  Q  F  A  L  V  Y  E  G  S  N  F  N  N  S  S  G  Y  R  E  C  I  *  R  V  K  S  V  F  F  L  L  T  F  S  S  S  C  T  K  G  S  E   </first_frame>
            <second_frame>  K  H  Y  L  M  H  K  K  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  M  H  S  *  L  Q  P  I  H  F  Q  V  L  V  L  P  V  M  I  L  R  V  R  R  K  L  L  P  F  S  V  K  L  L  M  K  L  L  :  V  V  A  *  V  L  M  V  H  L  P  E  D  I  V  L  L  G  K  A  I  K  W  E  V  D  F  M  A  E  D  L  S  N  *  Q   : G  N  L  T  M  T  *  L  G  K  Q  L  D  K  T  *  L  T  T  L  T  *  *  L  Q  M  Q  L  Y  L  L  K  Q  Q  Y  G  S  G  *  P  H  K  A  I  S  H  H  A  T  M  L  S  Q  G  N  G  R  H  Q  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S  I  F  *  F  P  L  C  L  R  S  S  C  I  Y  N  L  H  *  Y  M  R  E  A  I  L  I  I  Q  V  A  T  G  S  V  F  R  G  L  K  V  Y  S  F  Y  *  L  L  V  V  V  A  Q  K  A  V  N  </second_frame>
            <third_frame>   N  T  I  *  C  I  R  K  N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  *  C  I  H  S  C  S  Q  F  I  S  R  F  W  Y  Y  R  *  *  Y  C  A  *  E  G  N  C  C  L  F  R  S  N  F  S  *  N  Y  W :   W  *  P  K  C  *  W  S  I  C  R  R  I  L  F  C  *  G  R  Q  S  N  G  K  W  I  L  W  Q  R  T  Y  P  I  D  R  :  A  I  *  L  *  L  S  W  A  S  N  W  T  R  L  S  *  Q  P  *  L  S  S  Y  R  C  N  C  I  F  *  N  S  N  M  V  L  D  D  R  T  R  Q  *  A  I  M  P  R  C  Y  H  R  A  M  D  A  I  S  R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H  R  Y  F  N  F  P  F  V  Y  V  V  L  A  F  T  I  C  T  S  I  *  G  K  Q  F  *  *  F  K  W  L  Q  G  V  Y  L  E  G  *  K  C  I  L  S  T  D  F  *  *  *  L  H  K  R  Q  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76000" stop="75694"/>
                    <exon start="75437" stop="75329"/>
                    <exon start="75225" stop="74850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQMGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="79349" PGL_stop="78266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79349" e_stop="79053"/>
            <exon e_start="78979" e_stop="78883"/>
            <exon e_start="78821" e_stop="78266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79349" e_stop="79053" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78979" e_stop="78883" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78882" i_stop="78822" i_length="61"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78821" e_stop="78266" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79349" stop="79053"/>
              <exon start="78979" stop="78883"/>
              <exon start="78821" stop="78266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG : GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA : CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAA</gDNA_template>
            <first_frame> K  P  E  E  K  *  S  S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  :  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H   : T  N  L  T  T  N  E  L  D  K  V  L  V  L  D  K  S  *  *  T  T  L  I  *  L  R  Q  I  L  *  Y  H  S  K  Q  Q  Y  G  S  G  *  Q  N  R  I  I  N  H  H  A  T  T  L  S  L  D  N  G  R  H  P  L  K  I  Q  Q  L  I  E  F  Q  G  T  V  S  L  P  T  S  L  T  V  N  L  N  V  G  W  V  R  I  L  Q  R  K  V  E  L  D  F  T  G  G  I  V  V  C  *  M  F  L  L  V  K  I  W  T  V  T  I  K  R  T  S  P  R  A  K  R  L  Y  L  Y  I  E  R  E  C  K  L  C  L  C  I  T  L  *  S  L  *  V  I  F  G  C  N  Q  *  G  D  S  V  C  P  F  R  K  M  E  V  Y  F  Q  K  Y  *  S  Y  M  I  L  I  F  C  Y   </first_frame>
            <second_frame>  S  Q  R  K  N  E  V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W :   W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  :  P  I  *  L  R  T  S  W  T  R  Y  W  C  W  T  R  V  S  E  Q  P  *  F  S  C  D  R  S  Y  N  I  I  Q  N  S  N  M  V  L  D  D  R  T  G  *  *  T  I  M  P  Q  R  Y  H  W  T  M  D  A  I  P  *  R  Y  S  S  *  *  S  S  R  V  R  C  H  Y  Q  H  H  *  R  S  I  *  M  W  D  G  S  E  Y  C  S  G  K  S  N  W  I  L  Q  E  V  L  W  Y  V  E  C  S  Y  W  *  K  F  G  L  *  Q  S  K  E  L  R  P  G  L  S  V  F  I  Y  I  *  R  E  N  A  N  Y  V  Y  V  L  R  C  E  V  Y  K  L  Y  L  D  V  I  N  K  G  I  L  Y  A  H  L  E  K  W  K  F  I  F  R  N  T  K  V  I  *  F  *  S  F  V  I  </second_frame>
            <third_frame>   A  R  G  K  M  K  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N   : G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  H :   Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  Q  E  L  V  N  N  P  D  L  V  A  T  D  P  I  I  S  F  K  T  A  I  W  F  W  M  T  E  Q  D  N  K  P  S  C  H  N  V  I  I  G  Q  W  T  P  S  P  K  D  T  A  A  N  R  V  P  G  Y  G  V  I  T  N  I  I  N  G  Q  F  E  C  G  M  G  P  N  T  A  A  E  S  R  I  G  F  Y  R  R  Y  C  G  M  L  N  V  P  T  G  E  N  L  D  C  N  N  Q  K  N  F  A  Q  G  *  A  S  L  F  I  Y  R  E  R  M  Q  I  M  F  M  Y  Y  V  V  K  S  I  S  Y  I  W  M  *  S  I  R  G  F  C  M  P  I  *  K  N  G  S  L  F  S  E  I  L  K  L  Y  D  F  D  L  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79347" stop="79053"/>
                    <exon start="78979" stop="78883"/>
                    <exon start="78821" stop="78440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARGKMKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNFAQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79330" e_stop="79053"/>
            <exon e_start="78979" e_stop="78332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79330" e_stop="79053" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79052" i_stop="78980" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="78979" e_stop="78332" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79330" stop="79053"/>
              <exon start="78979" stop="78332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG : GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCC</gDNA_template>
            <first_frame> V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W :   W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  V  R  Q  F  N  R  I  S  T  F  G  I  I  S  N  I  L  F  Y  A  A  N  L  T  T  N  E  L  D  K  V  L  V  L  D  K  S  *  *  T  T  L  I  *  L  R  Q  I  L  *  Y  H  S  K  Q  Q  Y  G  S  G  *  Q  N  R  I  I  N  H  H  A  T  T  L  S  L  D  N  G  R  H  P  L  K  I  Q  Q  L  I  E  F  Q  G  T  V  S  L  P  T  S  L  T  V  N  L  N  V  G  W  V  R  I  L  Q  R  K  V  E  L  D  F  T  G  G  I  V  V  C  *  M  F  L  L  V  K  I  W  T  V  T  I  K  R  T  S  P  R  A  K  R  L  Y  L  Y  I  E  R  E  C  K  L  C  L  C  I  T  L  *  S  L  *  V  I  F  G  C  N  Q  *  G  D  S  V  C   </first_frame>
            <second_frame>  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N   : G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  Q  *  D  N  S  I  E  Y  Q  H  L  E  S  L  V  I  F  F  F  M  Q  P  I  *  L  R  T  S  W  T  R  Y  W  C  W  T  R  V  S  E  Q  P  *  F  S  C  D  R  S  Y  N  I  I  Q  N  S  N  M  V  L  D  D  R  T  G  *  *  T  I  M  P  Q  R  Y  H  W  T  M  D  A  I  P  *  R  Y  S  S  *  *  S  S  R  V  R  C  H  Y  Q  H  H  *  R  S  I  *  M  W  D  G  S  E  Y  C  S  G  K  S  N  W  I  L  Q  E  V  L  W  Y  V  E  C  S  Y  W  *  K  F  G  L  *  Q  S  K  E  L  R  P  G  L  S  V  F  I  Y  I  *  R  E  N  A  N  Y  V  Y  V  L  R  C  E  V  Y  K  L  Y  L  D  V  I  N  K  G  I  L  Y  A  </second_frame>
            <third_frame>   S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  :  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H  S  K  T  I  Q  *  N  I  N  I  W  N  H  *  *  Y  S  F  L  C  S  Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  Q  E  L  V  N  N  P  D  L  V  A  T  D  P  I  I  S  F  K  T  A  I  W  F  W  M  T  E  Q  D  N  K  P  S  C  H  N  V  I  I  G  Q  W  T  P  S  P  K  D  T  A  A  N  R  V  P  G  Y  G  V  I  T  N  I  I  N  G  Q  F  E  C  G  M  G  P  N  T  A  A  E  S  R  I  G  F  Y  R  R  Y  C  G  M  L  N  V  P  T  G  E  N  L  D  C  N  N  Q  K  N  F  A  Q  G  *  A  S  L  F  I  Y  R  E  R  M  Q  I  M  F  M  Y  Y  V  V  K  S  I  S  Y  I  W  M  *  S  I  R  G  F  C  M  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78838" stop="78440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFLCSQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNFAQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79329" stop="79053"/>
                    <exon start="78979" stop="78879"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRYYGRGPIQLTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79340" e_stop="78778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79340" e_stop="78778" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79340" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</gDNA_template>
            <first_frame> E  K  *  S  S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  V  I  W  I  I  L  L  S  I  V  I  Y  R  *  Q  L  N  Y  I  I  R  S  F  A  G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  Q  *  D  N  S  I  E  Y  Q  H  L  E  S  L  V  I  F  F  F  M  Q  P  I  *  L  R  T  S  W  T  R  Y  W  C  W   </first_frame>
            <second_frame>  K  N  E  V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W  *  F  G  S  S  F  L  A  L  *  F  I  G  N  N  *  I  I  S  F  A  L  L  Q  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H  S  K  T  I  Q  *  N  I  N  I  W  N  H  *  *  Y  S  F  L  C  S  Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  </second_frame>
            <third_frame>   K  M  K  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N  G  N  L  D  H  P  S  *  H  C  N  L  *  V  T  I  E  L  Y  H  S  L  F  C  R  W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  V  R  Q  F  N  R  I  S  T  F  G  I  I  S  N  I  L  F  Y  A  A  N  L  T  T  N  E  L  D  K  V  L  V  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79338" stop="79030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGNLDHPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="84410" PGL_stop="87738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84410" e_stop="84602"/>
            <exon e_start="87191" e_stop="87738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84410" e_stop="84602" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84603" i_stop="87190" i_length="2588"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="87191" e_stop="87738" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84410" stop="84602"/>
              <exon start="87191" stop="87738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTT : GTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCTGGACAATTGC</gDNA_template>
            <first_frame> G  I  G  S  L  P  C  K  P  R  T  I  D  T  S  K  F  F  G  T  C  C  I  C  L  P  Q  K  H  S  L  N  L  W  K  H  K  L  F  M  G  R  I  T  W  K  M  Y  Q  P  C  I  C  S  F  S  T  W  S  F  I  W  *  C   : C  G  N  G  G  T  *  C  S  S  T  I  *  A  T  F  W  C  T  N  G  W  C  S  P  F  C  T  Q  H  N  A  R  C  H  H  I  G  S  K  T  P  T  I  G  G  Q  N  H  F  C  I  L  *  F  H  *  T  S  A  S  S  T  C  H  S  S  R  K  R  Q  I  L  S  N  C  L  N  P  *  R  K  Q  C  N  K  T  T  S  V  I  I  R  A  I  K  N  S  G  L  P  N  T  S  *  N  G  A  A  *  F  Q  D  Y  A  S  E  K  *  I  *  S  D  F  D  Q  F  Y  F  W  I  N  R  E  A  *  R  G  C  V  *  P  *  S  C  L  F  E  Y  N  C  *  H  F  S  I  R  N  G  K  K  P  C  F  S  L  D  S  G  Y  V  S  M  Q  R  V  V  S  P  L  D  N  C </first_frame>
            <second_frame>  G  L  V  V  C  P  A  N  H  V  P  L  T  P  L  S  F  L  E  R  A  A  F  V  Y  R  K  N  I  A  L  I  Y  G  N  I  S  Y  S  W  E  E  L  H  G  R  C  I  N  L  A  S  A  L  S  Q  L  G  V  S  S  G  D  V  :  V  A  T  V  A  P  N  V  A  A  Q  Y  E  L  H  F  G  V  P  M  A  G  A  V  L  S  A  L  N  T  M  L  D  A  T  T  L  A  Q  K  L  Q  Q  L  E  A  K  I  I  F  V  Y  S  D  F  I  E  L  V  L  Q  A  L  A  I  L  Q  E  K  D  K  S  C  L  I  V  L  I  H  E  G  N  N  V  T  K  P  P  V  S  S  S  G  P  S  K  I  L  D  Y  Q  T  L  L  E  M  G  Q  P  N  F  K  I  M  H  P  K  N  E  F  D  P  I  S  I  N  F  T  S  G  S  T  G  K  P  K  G  A  V  Y  S  H  R  A  A  Y  L  N  T  I  A  D  I  F  R  Y  E  M  G  K  S  P  V  F  L  W  T  V  D  M  F  R  C  N  G  W  C  L  P  W  T  I   </second_frame>
            <third_frame>   D  W  *  F  A  L  Q  T  T  Y  H  *  H  L  *  V  F  W  N  V  L  H  L  F  T  A  K  T  *  P  *  F  M  E  T  *  V  I  H  G  K  N  Y  M  E  D  V  S  T  L  H  L  L  F  L  N  L  E  F  H  L  V  M  L :   W  Q  R  W  H  L  M  *  Q  H  N  M  S  Y  I  L  V  Y  Q  W  L  V  Q  S  F  L  H  S  T  Q  C  *  M  P  P  H  W  L  K  N  S  N  N  W  R  P  K  S  F  L  Y  T  L  I  S  L  N  *  C  F  K  H  L  P  F  F  K  K  K  T  N  L  V  *  L  S  *  S  M  K  E  T  M  *  Q  N  H  Q  C  H  H  Q  G  H  Q  K  F  W  I  T  K  H  F  L  K  W  G  S  L  I  S  R  L  C  I  R  K  M  N  L  I  R  F  R  S  I  L  L  L  D  Q  Q  G  S  L  K  G  L  C  I  A  I  E  L  L  I  *  I  Q  L  L  T  F  F  D  T  K  W  E  K  A  L  F  F  S  G  Q  W  I  C  F  D  A  T  G  G  V  S  P  G  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84411" stop="84602"/>
                    <exon start="87191" stop="87736"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLVVCPANHVPLTPLSFLERAAFVYRKNIALIYGNISYSWEELHGRCINLASALSQLGVSSGDVVATVAPNVAAQYELHFGVPMAGAVLSALNTMLDATTLAQKLQQLEAKIIFVYSDFIELVLQALAILQEKDKSCLIVLIHEGNNVTKPPVSSSGPSKILDYQTLLEMGQPNFKIMHPKNEFDPISINFTSGSTGKPKGAVYSHRAAYLNTIADIFRYEMGKSPVFLWTVDMFRCNGWCLPWTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="88082" PGL_stop="88281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88082" e_stop="88281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="88082" e_stop="88281" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88082" stop="88281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTGAAGGGGTTCACAACATTATGATGGAAGAAGTTGATGTAAAAGATCCAGAGAGTATGAAAAGTGTACCAGCAGATGGAAAAACCACAGGGGAAATCATGTTTAGAGGCAATGCTATGATGATGGGGTACTTGAAAGATTCATCAAGAACTGAAGAAGCTTTTGAGGGAGGGTGGTATAGGACTAAAGATCTTGGTGT</gDNA_template>
            <first_frame> R  E  G  V  H  N  I  M  M  E  E  V  D  V  K  D  P  E  S  M  K  S  V  P  A  D  G  K  T  T  G  E  I  M  F  R  G  N  A  M  M  M  G  Y  L  K  D  S  S  R  T  E  E  A  F  E  G  G  W  Y  R  T  K  D  L  G   </first_frame>
            <second_frame>  V  K  G  F  T  T  L  *  W  K  K  L  M  *  K  I  Q  R  V  *  K  V  Y  Q  Q  M  E  K  P  Q  G  K  S  C  L  E  A  M  L  *  *  W  G  T  *  K  I  H  Q  E  L  K  K  L  L  R  E  G  G  I  G  L  K  I  L  V  </second_frame>
            <third_frame>   *  R  G  S  Q  H  Y  D  G  R  S  *  C  K  R  S  R  E  Y  E  K  C  T  S  R  W  K  N  H  R  G  N  H  V  *  R  Q  C  Y  D  D  G  V  L  E  R  F  I  K  N  *  R  S  F  *  G  R  V  V  *  D  *  R  S  W  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88082" stop="88279"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REGVHNIMMEEVDVKDPESMKSVPADGKTTGEIMFRGNAMMMGYLKDSSRTEEAFEGGWYRTKDLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="88308" PGL_stop="88730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88308" e_stop="88730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88308" e_stop="88730" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88308" stop="88730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCAT</gDNA_template>
            <first_frame> *  R  I  A  L  L  T  *  S  K  L  M  G  K  L  *  A  H  L  K  L  K  V  F  *  L  G  I  L  W  F  W  K  L  Q  L  *  Q  D  V  M  M  F  L  E  R  P  L  V  L  L  *  N  *  K  K  G  V  L  *  L  M  K  K  L  S  S  F  V  K  I  G  C  R  I  T  W  F  L  R  Q  *  S  L  V  I  Y  H  S  I  L  Q  G  K  Y  R  N  L  Y  L  G  T  R  S  T  M  Q  *  S  C  V  Y  K  L  G  A  T  Q  L  A  S  C  P  H  L  H  P  S  G  G  D  S  N  F  D  I  F  P  P  H  H </first_frame>
            <second_frame>  E  G  S  R  C  *  R  S  Q  N  *  W  E  N  Y  K  H  T  *  N  *  R  C  F  D  *  A  S  Y  G  F  G  S  C  S  C  S  K  M  *  *  C  S  W  R  D  P  L  C  F  C  E  T  E  K  R  V  F  Y  D  *  *  R  N  Y  Q  V  L  *  R  L  A  A  G  L  H  G  S  *  G  S  N  L  W  *  F  T  I  Q  F  F  R  E  N  T  E  I  Y  T  *  G  Q  G  Q  Q  C  N  E  V  V  S  T  S  W  V  Q  L  S  W  R  A  A  H  T  F  I  L  V  V  G  I  R  I  S  I  Y  S  L  P  T   </second_frame>
            <third_frame>   K  D  R  A  V  D  V  V  K  T  D  G  K  T  I  S  T  L  E  I  E  G  V  L  I  R  H  P  M  V  L  E  V  A  V  V  A  R  C  D  D  V  L  G  E  T  P  C  A  F  V  K  L  K  K  G  C  F  M  T  D  E  E  I  I  K  F  C  E  D  W  L  Q  D  Y  M  V  P  K  A  V  I  F  G  D  L  P  F  N  S  S  G  K  I  Q  K  F  I  L  R  D  K  V  N  N  A  M  K  L  C  L  Q  V  G  C  N  S  V  G  E  L  P  T  P  S  S  *  W  W  G  F  E  F  R  Y  I  P  S  P  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88310" stop="88690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRAVDVVKTDGKTISTLEIEGVLIRHPMVLEVAVVARCDDVLGETPCAFVKLKKGCFMTDEEIIKFCEDWLQDYMVPKAVIFGDLPFNSSGKIQKFILRDKVNNAMKLCLQVGCNSVGELPTPSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="95673" PGL_stop="98516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95673" e_stop="96255"/>
            <exon e_start="97559" e_stop="97869"/>
            <exon e_start="97946" e_stop="98078"/>
            <exon e_start="98163" e_stop="98516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95673" e_stop="96255" e_length="583"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="96256" i_stop="97558" i_length="1303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97559" e_stop="97869" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97870" i_stop="97945" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97946" e_stop="98078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="98079" i_stop="98162" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="98163" e_stop="98516" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95673" stop="96255"/>
              <exon start="97559" stop="97869"/>
              <exon start="97946" stop="98078"/>
              <exon start="98163" stop="98516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95724" stop="96057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGGAACCAAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG : GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</gDNA_template>
            <first_frame> I  G  T  K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L   : G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  </first_frame>
            <second_frame>  *  E  P  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  :  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A </second_frame>
            <third_frame>   R  N  Q  I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  R :   D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R :   K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95758" stop="96255"/>
                    <exon start="97559" stop="97869"/>
                    <exon start="97946" stop="98078"/>
                    <exon start="98163" stop="98432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVIISNVNPSSALLFTLAPISSSSSTITTANMTSPSIFLNPIFISLIIPVILGTVFYQLDSFDPVSYPTHVLSTDPPIVAPKRNNQVLRGSENIGVNQLLAPEDVAYDPESGVIYTACVDGWVKKVKVNESAADSTVEDWVFTGGRPLGLALGHHGEVIVADSEKGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="102777" PGL_stop="102021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102777" e_stop="102431"/>
            <exon e_start="102258" e_stop="102065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="1.000" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="102777" e_stop="102431" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102430" i_stop="102259" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102258" e_stop="102065" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102777" stop="102431"/>
              <exon start="102258" stop="102065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTT : GTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCT</gDNA_template>
            <first_frame> S  *  I  L  F  S  I  F  Q  D  *  M  G  C  Y  M  L  *  T  E  F  E  F  T  P  F  *  V  R  G  L  V  I  C  P  K  L  F  M  R  M  L  K  L  T  H  G  N  P  W  R  D  *  *  G  V  Q  L  I  I  S  L  *  H  P  L  V  S  W  T  E  L  L  R  F  L  E  T  G  L  L  L  C  M  V  L  L  L  N  S  L  G  K  R  L  I  I  D  V  *  R  W  L  L  L  C  L  S  W  V  F  L  V  V  M  L :   L  Q  R  W  L  L  M  Y  P  Q  C  K  S  C  I  L  R  F  Q  W  Q  E  Q  C  F  V  R  *  I  H  V  M  I  Q  L  W  Y  L  F  S  *  G  I  Q  K  L  R  S  F  S  L  T  S  S  C  L  M  L  L  K  E  H  W  I  </first_frame>
            <second_frame>  H  E  S  F  F  Q  Y  F  K  I  E  W  V  V  T  C  S  K  Q  S  S  S  S  P  H  F  E  S  E  V  S  L  F  V  P  N  Y  S  *  E  C  *  N  S  P  M  G  I  H  G  G  T  N  E  V  F  S  *  L  F  P  F  N  T  H  *  F  L  G  Q  S  C  *  G  F  *  R  Q  D  F  C  C  V  W  F  F  C  *  I  H  L  G  R  D  S  *  *  M  S  K  D  G  F  C  S  V  S  V  G  Y  F  S  W  *  C   : C  C  N  A  G  S  *  C  T  R  S  A  R  V  A  F  C  G  S  N  G  R  S  S  A  L  Y  V  E  Y  T  S  *  F  S  Y  G  I  C  S  P  E  A  F  R  S  *  D  H  F  R  *  P  A  V  V  *  C  C  S  R  S  T  G  S </second_frame>
            <third_frame>   M  N  P  F  F  N  I  S  R  L  N  G  L  L  H  A  L  N  R  V  R  V  H  P  I  L  S  Q  R  S  R  Y  L  S  Q  I  I  H  E  N  V  E  T  H  P  W  E  S  M  E  G  L  M  R  C  S  A  N  Y  F  P  L  T  P  I  S  F  L  D  R  A  A  K  V  F  R  D  R  T  S  V  V  Y  G  S  S  V  K  F  T  W  E  E  T  H  N  R  C  L  K  M  A  S  A  L  S  Q  L  G  I  S  R  G  D  V  :  V  A  T  L  A  P  N  V  P  A  V  Q  E  L  H  F  A  V  P  M  A  G  A  V  L  C  T  L  N  T  R  H  D  S  A  M  V  S  V  L  L  R  H  S  E  A  K  I  I  F  V  D  Q  Q  L  F  D  V  A  Q  G  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102775" stop="102431"/>
                    <exon start="102258" stop="102067"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNPFFNISRLNGLLHALNRVRVHPILSQRSRYLSQIIHENVETHPWESMEGLMRCSANYFPLTPISFLDRAAKVFRDRTSVVYGSSVKFTWEETHNRCLKMASALSQLGISRGDVVATLAPNVPAVQELHFAVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDQQLFDVAQGALD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102536" e_stop="102021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="102536" e_stop="102021" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102536" stop="102021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</gDNA_template>
            <first_frame> C  C  V  W  F  F  C  *  I  H  L  G  R  D  S  *  *  M  S  K  D  G  F  C  S  V  S  V  G  Y  F  S  W  *  C  C  K  F  D  F  S  A  L  E  Y  Y  V  *  M  N  G  *  *  Y  M  A  K  L  F  H  L  W  N  K  L  L  L  T  F  *  F  D  H  I  *  K  V  F  K  S  V  M  S  H  G  C  *  C  K  C  L  N  R  L  Q  R  W  L  L  M  Y  P  Q  C  K  S  C  I  L  R  F  Q  W  Q  E  Q  C  F  V  R  *  I  H  V  M  I  Q  L  W  Y  L  F  S  *  G  I  Q  K  L  R  S  F  S  L  T  S  S  C  L  M  L  L  K  E  H  W  I  F  L  Q  M  L  K  Q  N  L  F  *  Y  *  S  L </first_frame>
            <second_frame>  V  V  Y  G  S  S  V  K  F  T  W  E  E  T  H  N  R  C  L  K  M  A  S  A  L  S  Q  L  G  I  S  R  G  D  V  V  S  S  I  S  P  L  *  N  I  T  S  K  *  M  V  N  S  I  W  L  N  F  F  I  F  G  I  N  F  Y  *  H  F  S  L  I  T  Y  E  K  F  L  N  L  *  C  L  M  V  V  S  V  N  A  *  I  G  C  N  A  G  S  *  C  T  R  S  A  R  V  A  F  C  G  S  N  G  R  S  S  A  L  Y  V  E  Y  T  S  *  F  S  Y  G  I  C  S  P  E  A  F  R  S  *  D  H  F  R  *  P  A  V  V  *  C  C  S  R  S  T  G  S  S  C  R  C  *  N  K  T  S  S  N  I  N  P   </second_frame>
            <third_frame>   L  C  M  V  L  L  L  N  S  L  G  K  R  L  I  I  D  V  *  R  W  L  L  L  C  L  S  W  V  F  L  V  V  M  L  *  V  R  F  L  R  F  R  I  L  R  L  N  E  W  L  I  V  Y  G  *  T  F  S  S  L  E  *  T  S  T  N  I  L  V  *  S  H  M  K  S  F  *  I  C  D  V  S  W  L  L  V  *  M  L  E  *  V  A  T  L  A  P  N  V  P  A  V  Q  E  L  H  F  A  V  P  M  A  G  A  V  L  C  T  L  N  T  R  H  D  S  A  M  V  S  V  L  L  R  H  S  E  A  K  I  I  F  V  D  Q  Q  L  F  D  V  A  Q  G  A  L  D  L  L  A  D  A  K  T  K  P  L  L  I  L  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102258" stop="102022"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATLAPNVPAVQELHFAVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDQQLFDVAQGALDLLADAKTKPLLILIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="108989" PGL_stop="108156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108989" e_stop="108156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="108989" e_stop="108156" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108989" stop="108156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGT</gDNA_template>
            <first_frame> R  V  H  H  L  Y  G  L  T  E  T  Y  G  P  G  T  Y  N  L  W  R  P  E  W  D  S  L  P  P  N  E  K  Y  K  L  K  A  R  Q  G  V  Q  H  L  C  S  E  A  V  D  V  M  D  P  L  T  M  E  K  V  P  E  D  G  K  T  I  G  E  I  M  F  R  G  N  T  V  M  S  E  Y  L  K  D  E  E  A  T  K  E  A  F  K  G  G  W  F  H  S  G  D  L  A  V  K  H  P  D  G  Y  I  E  V  K  D  R  L  K  D  I  V  I  S  G  G  E  N  I  S  T  I  E  V  E  R  V  L  Y  S  H  P  A  V  F  E  T  A  V  V  A  R  P  D  N  H  W  G  Q  T  P  C  A  F  V  K  L  K  D  G  S  N  V  S  E  Q  E  I  I  N  F  C  R  D  N  L  P  H  Y  M  A  P  R  T  V  I  F  Q  H  L  P  K  T  S  T  G  K  I  Q  K  F  I  L  R  E  K  A  R  A  L  G  S  L  C  *  R  K  S  V  F  L  A  V  R  F  S  F  F  *  F  S  T  T  E  R  L  L  S  M  L  *  S  V  F  L  T  F  *  R  L  K  S  P  Q  K  V  Y  A  N  D  L  Y  V  V  Q  A  G  H  G </first_frame>
            <second_frame>  E  Y  I  T  Y  M  D  *  Q  R  H  M  V  Q  V  H  I  I  C  G  G  L  S  G  I  L  Y  H  Q  T  K  S  T  N  *  K  Q  D  K  G  C  N  I  F  V  Q  R  Q  W  M  *  W  T  L  L  Q  W  R  K  Y  Q  K  M  V  K  Q  *  V  K  L  C  L  E  G  I  Q  *  *  V  N  I  *  K  M  K  K  Q  Q  K  K  L  L  K  V  D  G  F  I  V  V  I  W  L  *  N  I  Q  T  D  T  *  K  L  R  T  D  *  K  I  S  *  S  L  V  E  K  T  *  A  Q  *  R  W  K  E  F  C  I  V  I  Q  Q  F  L  K  Q  Q  W  L  R  D  Q  I  I  T  G  G  K  H  L  V  H  L  *  S  *  R  M  V  Q  M  L  V  S  K  K  L  S  T  S  A  G  I  T  C  L  I  T  W  H  L  E  Q  S  Y  F  N  I  S  L  K  L  Q  Q  A  K  Y  K  N  S  F  *  E  R  K  P  E  P  W  E  V  F  A  E  G  N  P  F  F  L  L  S  D  S  L  S  S  N  F  L  Q  L  K  D  F  Y  L  C  C  N  L  F  F  L  P  F  K  D  *  S  L  L  K  R  C  M  L  M  I  S  M  L  Y  K  L  D  M   </second_frame>
            <third_frame>   S  T  S  L  I  W  T  N  R  D  I  W  S  R  Y  I  *  F  V  E  A  *  V  G  F  F  T  T  K  R  K  V  Q  T  E  S  K  T  R  G  A  T  S  L  F  R  G  S  G  C  D  G  P  S  Y  N  G  E  S  T  R  R  W  *  N  N  R  *  N  Y  V  *  R  E  Y  S  N  E  *  I  S  E  R  *  R  S  N  K  R  S  F  *  R  W  M  V  S  *  W  *  F  G  C  E  T  S  R  R  I  H  R  S  *  G  Q  I  E  R  Y  R  N  L  W  W  R  K  H  K  H  N  R  G  G  K  S  F  V  *  S  S  S  S  F  *  N  S  S  G  C  A  T  R  *  S  L  G  A  N  T  L  C  I  C  E  V  E  G  W  F  K  C  *  *  A  R  N  Y  Q  L  L  Q  G  *  L  A  S  L  H  G  T  S  N  S  H  I  S  T  S  P  *  N  F  N  R  Q  N  T  K  I  H  S  K  R  E  S  Q  S  L  G  K  S  L  L  K  E  I  R  F  S  C  C  P  I  L  F  L  L  I  F  Y  N  *  K  T  S  I  Y  A  V  I  C  F  S  Y  L  L  K  I  E  V  S  S  K  G  V  C  *  *  S  L  C  C  T  S  W  T  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0238L13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108989" stop="108318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVHHLYGLTETYGPGTYNLWRPEWDSLPPNEKYKLKARQGVQHLCSEAVDVMDPLTMEKVPEDGKTIGEIMFRGNTVMSEYLKDEEATKEAFKGGWFHSGDLAVKHPDGYIEVKDRLKDIVISGGENISTIEVERVLYSHPAVFETAVVARPDNHWGQTPCAFVKLKDGSNVSEQEIINFCRDNLPHYMAPRTVIFQHLPKTSTGKIQKFILREKARALGSLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 36072 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 2121 bytes was the average size of a spliced alignment
$ 17000 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1700 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:19:49
-->
