<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:43:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0323C04-uoJKs/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0323C04-uoJKs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323C04-uoJKs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g07930" ref_strand="+" ref_description="C2_At3g07930">
      <seq>agaatcagatcaatgagaagatgattgaacagaaagcacgagtggtttccccttactttttgaactcaaggaatggagaaactgaaggttgtggactgaaagctggtaaaactgtgttcgagccttgcttatctcaaaatcagatcaatgagaagatgattgaacagaaagcacgagcggtttgcccttactttttgaactcaaggaatggagaaactgaaatgaaaaaaggcaggtctgtagaatgtgtgaagaaaagaaatgataaaaaattacgaaccaaagttcgagtggtttccccttactttgctaacttaaaagtgggagaagaaataaaggtaggtaaggatagttcaaacgcttcgaagaactgtctcaatggaagaaaggtttctccctactttcagaatgcatatcgtgaaaagaagaagagtacaataggttcaaaaagacagaaaccttgtctctctgcttcccagaaaagagacgaggcatatttaaggaggagtgaagataacatgtgggtacctcctcgatcccattttaatctcctccaagaaaaccatgctcatgatccttggagggtgttggttatttgcatgcttttgaattgcaccaccggtgtgcaggttaggagagtggtagacgagtttttcactctgtgtccaaatgctgtggcagcaacagaggttgctgtagaggatatagaaaagttgctgcgacctttaggattatatacaaagaggtcactgtctattccgcgtctctctcaagaatatcttggaaaaaattggactcatgtcacacagctgcatggtattggcaagtatgcagctgatgcatatgcaatattttgtacgggcaattgggatcaagtacatccaaatgatcacatgctaacaaaatactgggaattcctgcatgcaaatggctcggcctcaacctgagggtgcaatgtatttacctgaagatgatgcatagttagggtatcttttgggggtcagttgcatattttcggtagattaacctcttgaccatttttgtggtgtatagtacttgcctaagcaacagcttaattaatatatcatctctgcataaaaaaaaaaaaaaattnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323C04-uoJKs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0323C04.2" temp_strand="-" temp_description="C02HBa0323C04.2  AC215440.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323C04 sequenced_by:kribb upload_account_name:korea">
        <position start="64652" stop="62429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64352" g_stop="63724" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63723" i_stop="63275" i_length="449">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63274" g_stop="63078" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="826" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63077" i_stop="63005" i_length="73">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63004" g_stop="62728" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="1103" r_length="277" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1117" polyA_stop="1147"/>
      <MATCH_line gen_id="C02HBa0323C04.2" gen_strand="-" ref_id="C2_At3g07930" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1103</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323C04.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g07930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64352" e_stop="63724"/>
          <exon e_start="63274" e_stop="63078"/>
          <exon e_start="63004" e_stop="62728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGTGGTTTCCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAGGTTGTGGACTGAAAGCTGGTAAAACTGTGTTCGAGCCTTGCTTATCTCAAAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGCGGTTTGCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAATGAAAAAAGGCAGGTCTGTAGAATGTGTGAAGAAAAGAAATGATAAAAAATTACGAACCAAAGTTCGAGTGGTTTCCCCTTACTTTGCTAACTTAAAAGTGGGAGAAGAAATAAAGGTAGGTAAGGATAGTTCAAACGCTTCGAAGAACTGTCTCAATGGAAGAAAGGTTTCTCCCTACTTTCAGAATGCATATCGTGAAAAGAAGAAGAGTACAATAGGTTCAAAAAGACAGAAACCTTGTCTCTCTGCTTCCCAGAAAAGAGACGAGGCATATTTAAGGAGGAGTGAAGATAACATGTGGGTACCTCCTCGATCCCATTTTAATCTCCTCCAAGAAAACCATGCTCATGATCCTTGGAGGGTGTTGGTTATTTGCATGCTTTTGAATTGCACCACCGGTGTGCAGGTAATTGTTGCCACCGTTCTCTTTCTTATGTAGTTAACAAACTTATGATTCTTGAGATGTTTGGCTTGTTTGACAAGATTAAGTTTCCTACATTTTAAGCAGCAGCATCCTATGAGCAATTAGGAAACAAATTTTAGACCTAAAAAGTGATATAGGATAATTCTCCATTGTTAAATGAGGGCATATACAGGCAGTTGTTAACTGATAAATTATTGTGCTAAAGTATCAGCCAGTTGATTGCTTTGCATTACCTTAAAAGTACTGGTGGACCTATTTAGGTAAGGAGCAGTCAATTTGTATGGGGCATTTCCCCCTTTCCTGTGGTTCAGGCTTCATGTTGATCAGAAGTGAAGCAATGAGAGCGACATAGTTGTTCCTGTCTTAAATTTTTGTAATGACTTTATTCTGCTTTTGAGATCACATACTAACAGTGAGCACATGCCTGTTAGGTTAGGAGAGTGGTAGACGAGTTTTTCACTCTGTGTCCAAATGCTGTGGCAGCAACAGAGGTTGCTGTAGAGGATATAGAAAAGTTGCTGCGACCTTTAGGATTATATACAAAGAGGTCACTGTCTATTCCGCGTCTCTCTCAAGAATATCTTGGAAAAAATTGGACTCATGTCACACAGCTGCATGGTATTGGCAAGTAAGGGAACTCTACCTTTTGCACCTAAGTAAATGGATTTTAGCTCGACTTGATTAAGTGTTTTTCTTTCCAGGTATGCAGCTGATGCATATGCAATATTTTGTACGGGCAATTGGGATCAAGTACATCCAAATGATCACATGCTAACAAAATACTGGGAATTCCTGCATGCAAATGGCTCGGCCTCAACCTGAGGGTGCAATGTATTTACCTGAAGATGATGCATAGTTAGGGTATCTTTTGGGGGTCAGTTGCATATTTTCGGTAGATTAACCTCTTGACCATTTTTGTGGTGTATAGTACTTGCCTAAGCAACAGCTTAATTAATATATCATCTCTGCATATGACAG</genome_strand>
        <mrna_strand>AGAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGTGGTTTCCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAGGTTGTGGACTGAAAGCTGGTAAAACTGTGTTCGAGCCTTGCTTATCTCAAAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGCGGTTTGCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAATGAAAAAAGGCAGGTCTGTAGAATGTGTGAAGAAAAGAAATGATAAAAAATTACGAACCAAAGTTCGAGTGGTTTCCCCTTACTTTGCTAACTTAAAAGTGGGAGAAGAAATAAAGGTAGGTAAGGATAGTTCAAACGCTTCGAAGAACTGTCTCAATGGAAGAAAGGTTTCTCCCTACTTTCAGAATGCATATCGTGAAAAGAAGAAGAGTACAATAGGTTCAAAAAGACAGAAACCTTGTCTCTCTGCTTCCCAGAAAAGAGACGAGGCATATTTAAGGAGGAGTGAAGATAACATGTGGGTACCTCCTCGATCCCATTTTAATCTCCTCCAAGAAAACCATGCTCATGATCCTTGGAGGGTGTTGGTTATTTGCATGCTTTTGAATTGCACCACCGGTGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGAGAGTGGTAGACGAGTTTTTCACTCTGTGTCCAAATGCTGTGGCAGCAACAGAGGTTGCTGTAGAGGATATAGAAAAGTTGCTGCGACCTTTAGGATTATATACAAAGAGGTCACTGTCTATTCCGCGTCTCTCTCAAGAATATCTTGGAAAAAATTGGACTCATGTCACACAGCTGCATGGTATTGGCAA.........................................................................GTATGCAGCTGATGCATATGCAATATTTTGTACGGGCAATTGGGATCAAGTACATCCAAATGATCACATGCTAACAAAATACTGGGAATTCCTGCATGCAAATGGCTCGGCCTCAACCTGAGGGTGCAATGTATTTACCTGAAGATGATGCATAGTTAGGGTATCTTTTGGGGGTCAGTTGCATATTTTCGGTAGATTAACCTCTTGACCATTTTTGTGGTGTATAGTACTTGCCTAAGCAACAGCTTAATTAATATATCATCTCTGCATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323C04-uoJKs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLEC-7-P21" ref_strand="+" ref_description="cLEC-7-P21">
      <seq>cagaatcagatcaatgagaagatgattgaacagaaagcacgagtggtgtccccttactttttgaactcaaggaatggagaaactgaaggttgtggactgaaagctggtaaaactgtgttcgagccttgcttatctcaaaatcagatcaatgagaagatgattgaacagaaagcacgagcggtttgcccttactttttgaactcaaggaatggagaaactgaaatgaaaaaaggcaggtctgtagaatgtgtgaagaaaagaaatgataaaaaattacgaaccaaagttcgagtggtttccccttactttgctaacttaaaagtgggagaagaaataaaggtaggtaaggatagttcaaacgcttcgaagaactgtctcaatggaagaaaggtttctccctactttcaaaatgcatatcgtgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323C04-uoJKs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0323C04.2" temp_strand="-" temp_description="C02HBa0323C04.2  AC215440.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323C04 sequenced_by:kribb upload_account_name:korea">
        <position start="64653" stop="63627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64353" g_stop="63927" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323C04.2" gen_strand="-" ref_id="cLEC-7-P21" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323C04.2" gen_strand="-"/>
        <rDNA rDNA_id="cLEC-7-P21" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64353" e_stop="63927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGTGGTTTCCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAGGTTGTGGACTGAAAGCTGGTAAAACTGTGTTCGAGCCTTGCTTATCTCAAAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGCGGTTTGCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAATGAAAAAAGGCAGGTCTGTAGAATGTGTGAAGAAAAGAAATGATAAAAAATTACGAACCAAAGTTCGAGTGGTTTCCCCTTACTTTGCTAACTTAAAAGTGGGAGAAGAAATAAAGGTAGGTAAGGATAGTTCAAACGCTTCGAAGAACTGTCTCAATGGAAGAAAGGTTTCTCCCTACTTTCAGAATGCATATCGTGAAAAGA</genome_strand>
        <mrna_strand>CAGAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGTGGTGTCCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAGGTTGTGGACTGAAAGCTGGTAAAACTGTGTTCGAGCCTTGCTTATCTCAAAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGCGGTTTGCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAATGAAAAAAGGCAGGTCTGTAGAATGTGTGAAGAAAAGAAATGATAAAAAATTACGAACCAAAGTTCGAGTGGTTTCCCCTTACTTTGCTAACTTAAAAGTGGGAGAAGAAATAAAGGTAGGTAAGGATAGTTCAAACGCTTCGAAGAACTGTCTCAATGGAAGAAAGGTTTCTCCCTACTTTCAAAATGCATATCGTGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="64353" PGL_stop="62728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64353" e_stop="63724"/>
            <exon e_start="63274" e_stop="63078"/>
            <exon e_start="63004" e_stop="62728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.642" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64353" e_stop="63724" e_length="630"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.642">
            <gDNA_intron_boundary i_start="63723" i_stop="63275" i_length="449"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63274" e_stop="63078" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.993">
            <gDNA_intron_boundary i_start="63077" i_stop="63005" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="63004" e_stop="62728" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64353" stop="63927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLEC-7-P21" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64352" stop="63724"/>
              <exon start="63274" stop="63078"/>
              <exon start="63004" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g07930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGTGGTTTCCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAGGTTGTGGACTGAAAGCTGGTAAAACTGTGTTCGAGCCTTGCTTATCTCAAAATCAGATCAATGAGAAGATGATTGAACAGAAAGCACGAGCGGTTTGCCCTTACTTTTTGAACTCAAGGAATGGAGAAACTGAAATGAAAAAAGGCAGGTCTGTAGAATGTGTGAAGAAAAGAAATGATAAAAAATTACGAACCAAAGTTCGAGTGGTTTCCCCTTACTTTGCTAACTTAAAAGTGGGAGAAGAAATAAAGGTAGGTAAGGATAGTTCAAACGCTTCGAAGAACTGTCTCAATGGAAGAAAGGTTTCTCCCTACTTTCAGAATGCATATCGTGAAAAGAAGAAGAGTACAATAGGTTCAAAAAGACAGAAACCTTGTCTCTCTGCTTCCCAGAAAAGAGACGAGGCATATTTAAGGAGGAGTGAAGATAACATGTGGGTACCTCCTCGATCCCATTTTAATCTCCTCCAAGAAAACCATGCTCATGATCCTTGGAGGGTGTTGGTTATTTGCATGCTTTTGAATTGCACCACCGGTGTGCAG : GTTAGGAGAGTGGTAGACGAGTTTTTCACTCTGTGTCCAAATGCTGTGGCAGCAACAGAGGTTGCTGTAGAGGATATAGAAAAGTTGCTGCGACCTTTAGGATTATATACAAAGAGGTCACTGTCTATTCCGCGTCTCTCTCAAGAATATCTTGGAAAAAATTGGACTCATGTCACACAGCTGCATGGTATTGGCAA : GTATGCAGCTGATGCATATGCAATATTTTGTACGGGCAATTGGGATCAAGTACATCCAAATGATCACATGCTAACAAAATACTGGGAATTCCTGCATGCAAATGGCTCGGCCTCAACCTGAGGGTGCAATGTATTTACCTGAAGATGATGCATAGTTAGGGTATCTTTTGGGGGTCAGTTGCATATTTTCGGTAGATTAACCTCTTGACCATTTTTGTGGTGTATAGTACTTGCCTAAGCAACAGCTTAATTAATATATCATCTCTGCATATGACAG</gDNA_template>
            <first_frame> Q  N  Q  I  N  E  K  M  I  E  Q  K  A  R  V  V  S  P  Y  F  L  N  S  R  N  G  E  T  E  G  C  G  L  K  A  G  K  T  V  F  E  P  C  L  S  Q  N  Q  I  N  E  K  M  I  E  Q  K  A  R  A  V  C  P  Y  F  L  N  S  R  N  G  E  T  E  M  K  K  G  R  S  V  E  C  V  K  K  R  N  D  K  K  L  R  T  K  V  R  V  V  S  P  Y  F  A  N  L  K  V  G  E  E  I  K  V  G  K  D  S  S  N  A  S  K  N  C  L  N  G  R  K  V  S  P  Y  F  Q  N  A  Y  R  E  K  K  K  S  T  I  G  S  K  R  Q  K  P  C  L  S  A  S  Q  K  R  D  E  A  Y  L  R  R  S  E  D  N  M  W  V  P  P  R  S  H  F  N  L  L  Q  E  N  H  A  H  D  P  W  R  V  L  V  I  C  M  L  L  N  C  T  T  G  V  Q  :  V  R  R  V  V  D  E  F  F  T  L  C  P  N  A  V  A  A  T  E  V  A  V  E  D  I  E  K  L  L  R  P  L  G  L  Y  T  K  R  S  L  S  I  P  R  L  S  Q  E  Y  L  G  K  N  W  T  H  V  T  Q  L  H  G  I  G  K :   Y  A  A  D  A  Y  A  I  F  C  T  G  N  W  D  Q  V  H  P  N  D  H  M  L  T  K  Y  W  E  F  L  H  A  N  G  S  A  S  T  *  G  C  N  V  F  T  *  R  *  C  I  V  R  V  S  F  G  G  Q  L  H  I  F  G  R  L  T  S  *  P  F  L  W  C  I  V  L  A  *  A  T  A  *  L  I  Y  H  L  C  I  *  Q </first_frame>
            <second_frame>  R  I  R  S  M  R  R  *  L  N  R  K  H  E  W  F  P  L  T  F  *  T  Q  G  M  E  K  L  K  V  V  D  *  K  L  V  K  L  C  S  S  L  A  Y  L  K  I  R  S  M  R  R  *  L  N  R  K  H  E  R  F  A  L  T  F  *  T  Q  G  M  E  K  L  K  *  K  K  A  G  L  *  N  V  *  R  K  E  M  I  K  N  Y  E  P  K  F  E  W  F  P  L  T  L  L  T  *  K  W  E  K  K  *  R  *  V  R  I  V  Q  T  L  R  R  T  V  S  M  E  E  R  F  L  P  T  F  R  M  H  I  V  K  R  R  R  V  Q  *  V  Q  K  D  R  N  L  V  S  L  L  P  R  K  E  T  R  H  I  *  G  G  V  K  I  T  C  G  Y  L  L  D  P  I  L  I  S  S  K  K  T  M  L  M  I  L  G  G  C  W  L  F  A  C  F  *  I  A  P  P  V  C  R :   L  G  E  W  *  T  S  F  S  L  C  V  Q  M  L  W  Q  Q  Q  R  L  L  *  R  I  *  K  S  C  C  D  L  *  D  Y  I  Q  R  G  H  C  L  F  R  V  S  L  K  N  I  L  E  K  I  G  L  M  S  H  S  C  M  V  L  A   : S  M  Q  L  M  H  M  Q  Y  F  V  R  A  I  G  I  K  Y  I  Q  M  I  T  C  *  Q  N  T  G  N  S  C  M  Q  M  A  R  P  Q  P  E  G  A  M  Y  L  P  E  D  D  A  *  L  G  Y  L  L  G  V  S  C  I  F  S  V  D  *  P  L  D  H  F  C  G  V  *  Y  L  P  K  Q  Q  L  N  *  Y  I  I  S  A  Y  D   </second_frame>
            <third_frame>   E  S  D  Q  *  E  D  D  *  T  E  S  T  S  G  F  P  L  L  F  E  L  K  E  W  R  N  *  R  L  W  T  E  S  W  *  N  C  V  R  A  L  L  I  S  K  S  D  Q  *  E  D  D  *  T  E  S  T  S  G  L  P  L  L  F  E  L  K  E  W  R  N  *  N  E  K  R  Q  V  C  R  M  C  E  E  K  K  *  *  K  I  T  N  Q  S  S  S  G  F  P  L  L  C  *  L  K  S  G  R  R  N  K  G  R  *  G  *  F  K  R  F  E  E  L  S  Q  W  K  K  G  F  S  L  L  S  E  C  I  S  *  K  E  E  E  Y  N  R  F  K  K  T  E  T  L  S  L  C  F  P  E  K  R  R  G  I  F  K  E  E  *  R  *  H  V  G  T  S  S  I  P  F  *  S  P  P  R  K  P  C  S  *  S  L  E  G  V  G  Y  L  H  A  F  E  L  H  H  R  C  A   : G  *  E  S  G  R  R  V  F  H  S  V  S  K  C  C  G  S  N  R  G  C  C  R  G  Y  R  K  V  A  A  T  F  R  I  I  Y  K  E  V  T  V  Y  S  A  S  L  S  R  I  S  W  K  K  L  D  S  C  H  T  A  A  W  Y  W  Q  :  V  C  S  *  C  I  C  N  I  L  Y  G  Q  L  G  S  S  T  S  K  *  S  H  A  N  K  I  L  G  I  P  A  C  K  W  L  G  L  N  L  R  V  Q  C  I  Y  L  K  M  M  H  S  *  G  I  F  W  G  S  V  A  Y  F  R  *  I  N  L  L  T  I  F  V  V  Y  S  T  C  L  S  N  S  L  I  N  I  S  S  L  H  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323C04.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64353" stop="63724"/>
                    <exon start="63274" stop="63078"/>
                    <exon start="63004" stop="62884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNQINEKMIEQKARVVSPYFLNSRNGETEGCGLKAGKTVFEPCLSQNQINEKMIEQKARAVCPYFLNSRNGETEMKKGRSVECVKKRNDKKLRTKVRVVSPYFANLKVGEEIKVGKDSSNASKNCLNGRKVSPYFQNAYREKKKSTIGSKRQKPCLSASQKRDEAYLRRSEDNMWVPPRSHFNLLQENHAHDPWRVLVICMLLNCTTGVQVRRVVDEFFTLCPNAVAATEVAVEDIEKLLRPLGLYTKRSLSIPRLSQEYLGKNWTHVTQLHGIGKYAADAYAIFCTGNWDQVHPNDHMLTKYWEFLHANGSAST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 187 chains have been computed
$ 
$ memory statistics:
$ 3808 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1904 bytes was the average size of a spliced alignment
$ 5592 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5592 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:43:44
-->
