<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:29:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719355" ref_strand="+" ref_description="SGN-E719355 [FC07CD07]">
      <seq>gagaatcttctaagcccttttccattcaagaaaaaacaattatcaatggcttccccgcgtgtacaagaccttctaccaccatctctagattctacttcccaacccccatcactcttcgatggaacaaccaggttgtatatcaattatcaatgcccctattctcaacgtgtgtggattaccaggaatgttaagggtttgcaagacatgatcaagttagttccaattgatcttcaaaataggcctgattggtacaaggaaaatgtttaccccaaaaataaggtgccttccctagagcacaacaacaaagtgacgggagagagtttggttcttgttaaatatgttgattgcaactttgaaggaccatcattcttgccagatgaccaggaaaagcgaaaatttgctgaagaattgatagcttatagtgacactacattcgtcccagaagtatacagatcattcgcaaaagatgcacggacactggctggtgcacaatttgattacctagaaaaagctctccacaaatttgacgatgggcctttcttccttggtcaattcagtcaggttgacataatatatgctccatttgtcgaaaggttccatgtttttatgccagaggggtttaactatgacatcacaaccgggaggcctaagctagccaagtggactgaggaaatgaacaatcttgacgggtacaagcaaacaaaagtcttggaacaagagaaaatgattgagtactacaagaatcgctttctgccgaaagcttgaaacttcaaaatgcattaacaatctcagatgaaagttacataggcttggactttggtatcaaatatataatggagttctataataatatgcaccaacaataaatttgctctatgnttttttatcgttagtgtttggaattgtattttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="21704" stop="17165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21405" g_stop="21350" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21349" i_stop="20592" i_length="758">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20591" g_stop="20517" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="131" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20516" i_stop="20366" i_length="151">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20365" g_stop="20305" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="192" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20304" i_stop="19525" i_length="780">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19524" g_stop="19438" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="279" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19437" i_stop="19129" i_length="309">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19128" g_stop="19030" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="378" r_length="99" r_score="0.909"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19029" i_stop="18939" i_length="91">
            <donor d_prob="0.875" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18938" g_stop="18833" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="484" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18832" i_stop="18742" i_length="91">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18741" g_stop="18665" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="561" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18664" i_stop="18494" i_length="171">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.724" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18493" g_stop="18386" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="669" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18385" i_stop="17833" i_length="553">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17832" g_stop="17746" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="756" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="17745" i_stop="17624" i_length="122">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="17623" g_stop="17465" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="915" r_length="159" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E719355" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21405" e_stop="21350"/>
          <exon e_start="20591" e_stop="20517"/>
          <exon e_start="20365" e_stop="20305"/>
          <exon e_start="19524" e_stop="19438"/>
          <exon e_start="19128" e_stop="19030"/>
          <exon e_start="18938" e_stop="18833"/>
          <exon e_start="18741" e_stop="18665"/>
          <exon e_start="18493" e_stop="18386"/>
          <exon e_start="17832" e_stop="17746"/>
          <exon e_start="17623" e_stop="17465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCTTCTAAGTCCTCTTCCATTCAAGAAAAAACAATTATCAATGGCTTCTTCGTAAGTTTTCATTTGCTTAAGTTTTTGTTAATTGTTAATCAAATGTATTTAATTTGTTCAAAATAGCTAGTAATTAACAGTAATCATTTAAAGAAGTATTGATTAAGGGATTGAGTTATGTTCGAGGTCCATTTGTTTCTTTGAATGTTTTATAGGGTAACAAGGGTTCTTTGTTATAAACTCCAGTTTCAAAACAAAAGTATCTAAAGCACGATTTCATGAAAAATAAAACAAAAAAATAACAAGATACAATATAAGTACAACAATAGATAGTGGTTCTGGTATAAAATTCCCTTTGTGGGGGTCTGACCCCTACAAGTTAGCAGAGAAGGGAGAGGAAATGGTGGTTGATGAATCGTCATAGTTAGTGTAAAAGTCCTTATATTGGATGCCATATGAAATTTCAGTTGAGTAGTTGAGTTAGCTACAAAGTTAATTTCTTTATCCGTAGGATATTTCAGTTGAGTAACTTTTATATATAATGAAGAAGATGAAGTGTTACCTAGTAATGGTTTTAAGGTATTGGGTAGTGGTGGTCGGAGTTATCTCAAGGAACTATTCGATTGGCCATTAAAAAGAAAGAAAAAAGATAATAAAGTGGGAGGTGGGGTTTGGGGTTTGTGTGTGTGTATGTGATTCACCAAGACTACTTGTTTTAAATATAGGATAAATGGTTGTATATGTATCTTGTATGCAAATTGTATATTTTATTTTGCTTTTGATATGGATGTTCATGGGTTATTCTGCTATTCGGACAGGAGTGTACAAGACCTTCTACCACCATCTCTGGATTCTACTTCCCAACCCCCATCACTCTTTGATGGAACTACCAGGTTTGAATAAATATTTTCTCTTATTTCTTTCTTGTTTGCCTTAAGAAACTATGGTGTTTGTCTTCGTTATGAAAAATGTGTTCTTTCTCATCATTACGGTTTTATTTCTCCGACTAAAGATTGTGATCTGAGTTGATTGTGTTGTCTGAAGGTTGTATATCAATTATCAATGCCCCTATTCACAACGTGTGTGGATTACAAGAAATGTTAAGGTTTGTCTTTATACCACTTCCTCCATTCTAATTTATCGAGCTTTTCTCTTAGTAGATTGTTCTTTAAACAAGTAAAACTTTCTATATTTGGAGACTCTTTAAACTTGAACTTACCATTTTACTCATAATTGCATATCTTTAAAGCCATAAAAATGTCATGACATGTATCAGACCAAATGTCGAAAGATAGTTTTGATATAGGTTCATTTCTTTTTCAAATTTCATGTCCAGTGAAATGCTGCCACGTAAAATAAAAAAGAGGGAGTATTTCTCAATTTTGTTTATGTATTTACAAGTACACTACGTGCAACAAGAAGAAGCCCCTTTACTAGGTGTAGAAAAGACTAGTGCGCAATGATTGATGAAAAGCAACAACTTCTTAGAATTCAGATAGTGTTGAAACCCTTTACAAGGGGTTGTTTGCTGCTCGATCGGAGAGAAGAAATTCTCTCGAATAGACATAAGACTTCAACTCATCATATAAAACTCTTATCTACGAAAATCCATGGGTCTTCACTTGGATTTTAATATACATTAAAATTTTGATGATTTTTAATTTACATATTCACATTCTATGTCAAAAATATTCGGTTTGGATTAGCCCATAGCTCAAAAGTTATATCCTCATCAGATAGGAAGTGCTACTAATTAGAATTGTTAATTTTATTTATGTCGTTAGTTATTTTAATTTTTGGAAGTAATTTCTATTATTGTTGAAATTAATCAGCACATGTGTTCTTATACCTGTCTAGATAAACTTTTTAACATTTTGAATTGCAGGGTTTGCAAGACATGATCAAGTTAGTTCCAATTGATCTTCAGAACAGGCCTGATTGGTACAAGGAAAAAGTTTACCCCAAAAATAAGGTAATTTTCGACAATACCAACTTTAATTTTTAATAACCCAATTCACTTGTATTTTGAAATCTTGAGCTAGTACTTTGACAGAGGAATTTGGCCTTGCTGTAAATTGTAGGAAAACTCCTGAAGAAAATGTCCATGAATTTTTGGGAAAGGGATTTCTCTTTCTCTTTGAATTCAATGACTATTGAAAAGCTAGTGCATACATGTTCAAGTCTTATCTTTCATATGATTGATGGAAGTGAATTTAATTCTTTAGGAGAGAATGCATCTCATTTCACGTGATGGTTTATATATATTTTCTACTTTTCGCAGGTGCCTTCCCTAGAGCACAACAACAAGGTGATCGGAGAGAGTTTTGTTCTGGTTAAATATGTTGACTATAACTTTGAAGGACCATCATTCATGCCAGATGTAAGATGTGAAATTTCAGTATGATCCTTTTTGTGTAGGAAAATCTTAAGATTTAAATTGATAAAAAAAAAATATTGGCCAACTAATGCAGGACCAGGAAAAGCAAAAATTTGCTGAAGAATTGATAGCTTATAGTGACACTACATTCGTCCCAGAAGTATATAGATCTTTCGCAAAAGATGCACGGAAACTGGCTGGTGAGAATTGAGCATGTGTTTGTTGAAACTCATCATGTTTTGTTTGTTAAATGTTTCTTATGTAAGTTAACGGTTTTAACACTTGTACTAGGTGCACAATTTGATTACCTAGAAAAAGCTCTCCACAAATTCGACGATGGGCCTTTCTTCCTTGGTCAATTCAGTCAGGTCATTACTATCTTTCATTTTCTTTTCCTCTCCAATAATGTTCCATGTGAGATGGTATCATTTTCCAAAAACATACTCAACAAGTAGTACAAAGTAGTGTGGTTGTACTTTTTTCCTAGAATTTCAAACTTCATAGAAGTTTTTGCTGATATGAAAACTTGATCGTGCTAGGTTGACATAATATATGCTCCATTTATCGAAAGGTTCCATGTTTTTATGCCAGAGGGGTTTAACTATGACATCACAACCGGGAGGCCTAAACTAGCCAAGTGGATTGAGGTATGACTTATATTCAATTTGGAGTGTAAAGTATGATTAATATATTTATATTATATAAGAAATTTTATTGTTCTTAAGATTAATTTAGTTTTATTAGATGTTGTATACTAGAATGTTCATCACAATAGAAAAGGATCCATGACTTTCCGTTGGAAAACATAGACACTAAGGCTTGTTAAAATTGCATTTCTTTCCTTTGGTAATAGCGTAAACTTCAAGGCTAGTTGGTTGGTTCATTTTTCATGTATAATTTATGTGCATTATAATGAAGGTAAGCCTTGAAAAAAGAATAAAGTTTTCTTTGTGTTTCTTGTAAGTCTTCCAGACTCTTCTCTTCCGATGCACCCATTTACATATTTTAAGAGTCTAATCAACATAACATGTTACATATATAAGTTCAAGCAGTGGAATCAACCTCCGGTATTTTTATTAGGGTGTCTTCATACATTACACCCTTTTGGTGTGCAGTATTATCCTAATTCTGCAGCGTTAAAGTGAGATGCTTCCTGCATCATTGTTCTATTTTATTTGTGCTGAATTAATCATCTCATAGGAAATGAACAATCTTGACGGATACAAGCAAACAAAAGTCTTGGAACAAGAGAAAATGGTTGAGTACTACAAGAATCGCTTTCTGCCGGTACCCACTTCGCAAACAATAAAGCAAACAATAAATACATTTATTTATTTTTCTTTTTTGGTTTGAGAACCGTACGTATAGCTACTGACATTTCACTATATATGTGTTTTCTTTTTTTACAGAAAGCTTGAAACTTCAAAAATGCATTGTCAATCTCAGATGAAAGTTACAGGAACTAGGACTTTGGTATGAAATATGCTATGGAGTTCTATAGTAATATGAACCAGCAAT-AATTTGCTCTATGTTTTTTTATCGTTAGTGTTTGGAATTGTATTTTCCTT</genome_strand>
        <mrna_strand>GAGAATCTTCTAAGCCCTTTTCCATTCAAGAAAAAACAATTATCAATGGCTTCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTACAAGACCTTCTACCACCATCTCTAGATTCTACTTCCCAACCCCCATCACTCTTCGATGGAACAACCAG.......................................................................................................................................................GTTGTATATCAATTATCAATGCCCCTATTCTCAACGTGTGTGGATTACCAGGAATGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGCAAGACATGATCAAGTTAGTTCCAATTGATCTTCAAAATAGGCCTGATTGGTACAAGGAAAATGTTTACCCCAAAAATAAG.....................................................................................................................................................................................................................................................................................................................GTGCCTTCCCTAGAGCACAACAACAAAGTGACGGGAGAGAGTTTGGTTCTTGTTAAATATGTTGATTGCAACTTTGAAGGACCATCATTCTTGCCAGAT...........................................................................................GACCAGGAAAAGCGAAAATTTGCTGAAGAATTGATAGCTTATAGTGACACTACATTCGTCCCAGAAGTATACAGATCATTCGCAAAAGATGCACGGACACTGGCTG...........................................................................................GTGCACAATTTGATTACCTAGAAAAAGCTCTCCACAAATTTGACGATGGGCCTTTCTTCCTTGGTCAATTCAGTCAG...........................................................................................................................................................................GTTGACATAATATATGCTCCATTTGTCGAAAGGTTCCATGTTTTTATGCCAGAGGGGTTTAACTATGACATCACAACCGGGAGGCCTAAGCTAGCCAAGTGGACTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGAACAATCTTGACGGGTACAAGCAAACAAAAGTCTTGGAACAAGAGAAAATGATTGAGTACTACAAGAATCGCTTTCTGCCG..........................................................................................................................AAAGCTTGAAACTTC-AAAATGCATTAACAATCTCAGATGAAAGTTACATAGGCTTGGACTTTGGTATCAAATATATAATGGAGTTCTATAATAATATGCACCAACAATAAATTTGCTCTATGNTTTTTTATCGTTAGTGTTTGGAATTGTATTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244201" ref_strand="+" ref_description="SGN-E244201 [cLEE-1-L22]">
      <seq>taagcttgcacttattttcactgcattaagtttgctatacaactcttaggatcgcgataggactttcttagcttgtaacataggctcagggtcaggtagggtatatttaggtatactttagtgactttttgccctccttgaaatatcggctaaacataccattttctatcattttatttgcccagtttctcatattttttcaccttgttattttcccttctttcttcatttttgtaagtgactcttcttttcttgcttgtatttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatattaacttttctttcaactaattcttgagtcaatttacttttattctttctctctctttgttctttcaaccccactttcaagagcattcctcataataaccactctcaactcatggctttgccatgagtcaaagtattcaatacccaaagttgggtcagagccataaaaagggttgtttactacattagccactctcaacttatgcttttggcataatctgaggtgcacatgtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="40112" stop="41267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40412" g_stop="40967" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E244201" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40412" e_stop="40967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTGCCCTTATTTTCACTACTTTAAGTTCGCTATACAACTCTTAGGATCACGATAGGACTTTCTTAGCTTGTAACATAGGCTCAGAGTCAGGTATGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTCCTTGACATATCGGCTAAACATACCATTTTCTATCATTTTATTTCCCCAATTTCTCATATTCTTTCACCTTGCTATTTTCCCTTCTTTCTTCATTTGTGTAAGTGATTCTCTTCTTTTCTTGCTTGTATTTC---T-T-T-TGTATGTGTCTATATATATATATATATATATATATATATATATATATATATT-ACATTTCTTTCAACTAATTCTTGAGTCACTTTACTTTTGTTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCCAGAGCATTCCTCATAATAGCCACCCTCAACTCATGGTTTTGCCATGAGTCAAAGTACACAATACCCAAAGTTGGGTCAGGGCCATAAAAAAGGGTTGTTTACTCCATTAGCCACCCTCAACTTATGCTTTTGGCATAAGCTGAGGTGCACATATCCAA</genome_strand>
        <mrna_strand>TAAGCTTGCACTTATTTTCACTGCATTAAGTTTGCTATACAACTCTTAGGATCGCGATAGGACTTTCTTAGCTTGTAACATAGGCTCAGGGTCAGGTAGGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTCCTTGAAATATCGGCTAAACATACCATTTTCTATCATTTTATTTGCCCAGTTTCTCATATTTTTTCACCTTGTTATTTTCCCTTCTTTCTTCATTTTTGTAAGTGA--CTCTTCTTTTCTTGCTTGTATTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATTAACTTTTCTTTCAACTAATTCTTGAGTCAATTTACTTTTATTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCAAGAGCATTCCTCATAATAACCACTCTCAACTCATGGCTTTGCCATGAGTCAAAGTATTCAATACCCAAAGTTGGGTCAGAGCCAT-AAAAAGGGTTGTTTACTACATTAGCCACTCTCAACTTATGCTTTTGGCATAATCTGAGGTGCACATGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302767" ref_strand="+" ref_description="SGN-E302767 [cLEY-1-K23](-)">
      <seq>tacttactgctcagcttactataaaatgcctagaaggagaacctaagaagaggccttctatgaaagaagtagtggaagtattggaacaagttgaattgataaaggagaaatcaaaaccttccaaaagcaaatccgagtcttcatctcatcgatacaagcagtcaccgagaagttatccttctccacgtggtgcaagcaaccatggatccggagccggatctggaagatgacaggtacaactggaaaggcaaacgcgagctgctgaaaaatgagtttgtttatacatttaattgtattgaatttgttgtagtccaatttggtttaatcattgttttggattacaaattttgtaaaattgtctgtcacatctgtactccatgggaataaatgtatttctatcgtttataagaaaactgatttcatttgtggaaggtatgattacagctaagattaacaggcagtccagcctgttgaaatgtaaatttgtgtaagcccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="70321" stop="69224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70021" g_stop="69535" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="508"/>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E302767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70021" e_stop="69535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCATTTGTGGAAGGTATGATTACAGCTAAGATTAACAGGCAGTCCAGCCTGTTGAAATGTAAATTTGT</genome_strand>
        <mrna_strand>TACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCATTTGTGGAAGGTATGATTACAGCTAAGATTAACAGGCAGTCCAGCCTGTTGAAATGTAAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694833" ref_strand="+" ref_description="SGN-E694833 [LH_Ea04P07](-)">
      <seq>aaaaaaaaaaaaaaaaccctcgtgccgaattcggcacgaggctcgatgggagttaccatgcaaagttatccgattttggcttagctaaagctgggccttcagctgggaactcacatgtgactactcgtatcatgggaacatatggttatgctgctcctgaatacattgcaacaggtcatctgtatgtaaaaagtgatgtatatggatttggtgttgtcttgcttgagcttttaacaggcttacgagcacttgacacaaaacgacctggcggacagcataatttggtggactggatgaaaccgatgctttttaacaaaaggaagctgaagtccattatggacgcccgaatggaaggccaatatagttcaaaggcagcaatacttactgctcagcttactataaaatgcctagaaggagaacctaagaataggccttctatgaaagaagtagtggaagtattggaacaagttgaatcgataaaggagaaatcaaaaccttccaaaagcaaatccgagttttcatttcatcgatacaagcagtcaccgagaagttatacttctccacgtggtgcaagcaaccatggatccggagccggatctggaagatgacaggtacaactggaaaggcaaacgcgagctgcagaaaaatgagtttgtttatacatttaattgtattgaatttgttgtagttcaatttggtttaatcattgttttagagtacaaattttgtaaaattgtctgtcacatctgtcctacaggggaataaatgtatttctatcgtttataagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="71243" stop="69309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70942" g_stop="70819" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="174" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70818" i_stop="70226" i_length="593">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70225" g_stop="69599" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="801" r_length="627" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E694833" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70942" e_stop="70819"/>
          <exon e_start="70225" e_stop="69599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAGGTGAGCAATAATTTCGAGCTGTTGTCCCATTACATTTTAAGATATACATATCAAATTATGAGTGTAATTCCAGCCATTTTATCTCAAAAAGTGATTCCATATTCTGGATATTCAATGGGCGAGACTCGCAAGTGACTTGAAGGTTTAGCTGTTTGAACTCGAGGTTGCTTGTTTTTCAATAAGAAAATAACCCGTAGTGCTTTATGAAACTAATTGCATTCGCTTGTTTGATAGATTTGTCTCAACTTTCAATTCGAAGTGGCTCTCTGTGTGCAACAAATATCACTTGCAGAAACTAGAACTTCATTATTTCTTCATAAAATTTCATTGTAGTATCTATGTTTTCAATGTCTAACATTTTTCACGCTCTCCCGCATTGGCTCGGATTCAGTACCTAAATAGATTTGCACATCTATTAAACCACCAGTAATATTTTGATCACCATTATGCTATATGCATTAAATTGCATAAATATATGTACATCTGGTTTGGCCGTGTGCAGAGTAAGCGAGACTACCTTGAAAGAGAAAGCTCGATCCCAGAAACATTTGCAGTATAATGTGTTAATCCAAGGATTCTTGTCATGTCAACAGGTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCAT</genome_strand>
        <mrna_strand>AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGCTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTTTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTTTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAATAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATCGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTTTTCATTTCATCGATACAAGCAGTCACCGAGAAGTTATACTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCAGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTTCAATTTGGTTTAATCATTGTTTTAGAGTACAAATTTTGTAAAATTGTCTGTCACATCTGTCCTACAGGGGAATAAATGTATTTCTATCGTTTATAAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E557100" ref_strand="+" ref_description="SGN-E557100 [cTSD-3-P2]">
      <seq>agcaatacttactgctcagcttactataaaatgcctagaaggagaacctaagaagaggccttctatgaaagaagtagtggaagtattggaacaagttgaattgataaaggagaaatcaaaaccttccaaaagcaaatccgagtcttcatctcatcgatacaagcagtcaccgagaagttatccttctccacgtggtgcaagcaaccatggatccggagccggatctggaagatgacaggtacaactggaaaggcaaacgcgagctgctgaaaaatgagtttgtttatacatttaattgtattgaatttgttgtagtccaatttggtttaatcattgttttggattacaaattttgtaaaattgtctgtcacatctgtactccatgggaataaatgtatttctatcgtttataagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="70326" stop="69309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70026" g_stop="69609" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="453"/>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E557100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70026" e_stop="69609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAA</genome_strand>
        <mrna_strand>AGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307615" ref_strand="+" ref_description="SGN-E307615 [cLEY-16-O6]">
      <seq>cactttcttgggagttgcggctcaaaattgccataggagcggcacgaggtttagcttttctacattcttcagaaaagcagatcatttacagagatttcaaggcctccaatatacttctcgatgggagttaccatgcaaagttatccgattttggcttagctaaagttgggccttcagctgggaactcacatgtgactactcgtatcatgggaacatatggttatgctgctcctgaatacattgcaacaggtcatctgtatgtaaaaagtgatgtatatggatttggtgttgtcttgcttgagctgttaacaggcttacgagcacttgacacaaaacgacctggcggacagcataatttggtggactggatgaaaccgatgctttctaacaaaaggaagctgaagtccattatggacgcccgaatggaaggccaatatagttcaaaggcagcaatacttactgctcagcttactataaaatgcctagaaggagaacctaagaagaggccttctatgaaagaagtagtggaagtattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="72540" stop="69637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72240" g_stop="72116" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72115" i_stop="70943" i_length="1173">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70942" g_stop="70819" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="249" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70818" i_stop="70226" i_length="593">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70225" g_stop="69937" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="538" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E307615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72240" e_stop="72116"/>
          <exon e_start="70942" e_stop="70819"/>
          <exon e_start="70225" e_stop="69937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTTGGGAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGGGTACAATCTTTTGACTTGCGATTCATTTGGTAGGCCAGTATTCTAAAACAATATAACAATAAGAGAATAATGACAAACAAAAGCTAGATTCAAGAGTCAGCTACTACATTGGTTGAACCAGTGGTGAAGACACCCTTTAGTAATGTGGGTAATCCGACACCGTTTTGCACAATTCTTTGTTAACAAGTTGACTAAATTTGTATATGTACAGTAGGTCGGTCCTACTTGTAAAGTATGCGAGGCAATTATATATTTTGGTACACAAAGTGATGTCTTAAAACTCACAATCCCAGACCTAAACCCACTCACAAACCGAATAGTTACTAACTGATCTCTCTTAAAATCATGCATATGCCATTGCCCCTAGGTTTTGGCCTAGTGCTAAGAGCATAGAGCAAGGTGTGTGTTAGGCGCACGTCATTCGTTCAAACCTTGTACTAGACAAAAGCTTGGTATGCTCAGTATTTGAGTGAAGGTAGAGGGGTACCCATCAAGCTTCGAACCATGCAGCACTGTTCCTTGGGAATTTCTTGATTATCAAAAATAAAATAATATCCTGCATATGCAAATTACTTTGACATATACTTGTTTCATATCCAATGCACTTGATACATCTTGTTATTAGCTTGTAATTTGGGTCAGTGGTAGTTTGATTGCCATTGTTTGTTTTTATTTTCTCTGTTTGGAGTACAGGTATGTGACTCTACTATAGCTTAGTGCATATCCCTTACGTTTCCTTTATCTTTTTTTACTTACTTTCACATAATTGAAACATGAGCAAGACCTAGAATCGGCTGGATTTCTGAAATTAATTATCTATTATATGTTGGTCTTTGGAGGATTCTCTTTCCATATGGTTCCCCAGTATTTCTCAAGGAGGCTGTGAGTTTATGTGATGATATGAGTAATAATACTGAACTTGAACGTTTTGTTCTGTTTAATATCATCAAAATCCCTTATCTGATCTCATATTGTTTTTCCTTTTCCGATGGAACTAAATGAAAGTACAAGTACGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTATGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTGAAGGTCTTCTATTTTTCTGTTTGCAGAGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAGGTGAGCAATAATTTCGAGCTGTTGTCCCATTACATTTTAAGATATACATATCAAATTATGAGTGTAATTCCAGCCATTTTATCTCAAAAAGTGATTCCATATTCTGGATATTCAATGGGCGAGACTCGCAAGTGACTTGAAGGTTTAGCTGTTTGAACTCGAGGTTGCTTGTTTTTCAATAAGAAAATAACCCGTAGTGCTTTATGAAACTAATTGCATTCGCTTGTTTGATAGATTTGTCTCAACTTTCAATTCGAAGTGGCTCTCTGTGTGCAACAAATATCACTTGCAGAAACTAGAACTTCATTATTTCTTCATAAAATTTCATTGTAGTATCTATGTTTTCAATGTCTAACATTTTTCACGCTCTCCCGCATTGGCTCGGATTCAGTACCTAAATAGATTTGCACATCTATTAAACCACCAGTAATATTTTGATCACCATTATGCTATATGCATTAAATTGCATAAATATATGTACATCTGGTTTGGCCGTGTGCAGAGTAAGCGAGACTACCTTGAAAGAGAAAGCTCGATCCCAGAAACATTTGCAGTATAATGTGTTAATCCAAGGATTCTTGTCATGTCAACAGGTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGA</genome_strand>
        <mrna_strand>CACTTTCTTGGGAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302766" ref_strand="+" ref_description="SGN-E302766 [cLEY-1-K23]">
      <seq>cgaggtttagcttttctacattcttcagaaaagcagatcatttacagagatttcaaggcctccaatatacttctcgatgggagttaccatgcaaagttatccgattttggcttagctaaagttgggccttcagctgggaactcacatgtgactactcgtatcatgggaacatatggttatgctgctcctgaatacattgcaacaggtcatctgtatgtaaaaagtgatgtatatggatttggtgttgtcttgcttgagctgttaacaggcttacgagcacttgacacaaaacgacctggcggacagcataatttggtggactggatgaaaccgatgctttctaacaaaaggaagctgaagtccattatggacgcccgaatggaaggccaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="72496" stop="69736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72196" g_stop="72116" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72115" i_stop="70943" i_length="1173">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70942" g_stop="70819" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="205" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70818" i_stop="70226" i_length="593">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70225" g_stop="70036" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E302766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72196" e_stop="72116"/>
          <exon e_start="70942" e_stop="70819"/>
          <exon e_start="70225" e_stop="70036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGGGTACAATCTTTTGACTTGCGATTCATTTGGTAGGCCAGTATTCTAAAACAATATAACAATAAGAGAATAATGACAAACAAAAGCTAGATTCAAGAGTCAGCTACTACATTGGTTGAACCAGTGGTGAAGACACCCTTTAGTAATGTGGGTAATCCGACACCGTTTTGCACAATTCTTTGTTAACAAGTTGACTAAATTTGTATATGTACAGTAGGTCGGTCCTACTTGTAAAGTATGCGAGGCAATTATATATTTTGGTACACAAAGTGATGTCTTAAAACTCACAATCCCAGACCTAAACCCACTCACAAACCGAATAGTTACTAACTGATCTCTCTTAAAATCATGCATATGCCATTGCCCCTAGGTTTTGGCCTAGTGCTAAGAGCATAGAGCAAGGTGTGTGTTAGGCGCACGTCATTCGTTCAAACCTTGTACTAGACAAAAGCTTGGTATGCTCAGTATTTGAGTGAAGGTAGAGGGGTACCCATCAAGCTTCGAACCATGCAGCACTGTTCCTTGGGAATTTCTTGATTATCAAAAATAAAATAATATCCTGCATATGCAAATTACTTTGACATATACTTGTTTCATATCCAATGCACTTGATACATCTTGTTATTAGCTTGTAATTTGGGTCAGTGGTAGTTTGATTGCCATTGTTTGTTTTTATTTTCTCTGTTTGGAGTACAGGTATGTGACTCTACTATAGCTTAGTGCATATCCCTTACGTTTCCTTTATCTTTTTTTACTTACTTTCACATAATTGAAACATGAGCAAGACCTAGAATCGGCTGGATTTCTGAAATTAATTATCTATTATATGTTGGTCTTTGGAGGATTCTCTTTCCATATGGTTCCCCAGTATTTCTCAAGGAGGCTGTGAGTTTATGTGATGATATGAGTAATAATACTGAACTTGAACGTTTTGTTCTGTTTAATATCATCAAAATCCCTTATCTGATCTCATATTGTTTTTCCTTTTCCGATGGAACTAAATGAAAGTACAAGTACGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTATGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTGAAGGTCTTCTATTTTTCTGTTTGCAGAGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAGGTGAGCAATAATTTCGAGCTGTTGTCCCATTACATTTTAAGATATACATATCAAATTATGAGTGTAATTCCAGCCATTTTATCTCAAAAAGTGATTCCATATTCTGGATATTCAATGGGCGAGACTCGCAAGTGACTTGAAGGTTTAGCTGTTTGAACTCGAGGTTGCTTGTTTTTCAATAAGAAAATAACCCGTAGTGCTTTATGAAACTAATTGCATTCGCTTGTTTGATAGATTTGTCTCAACTTTCAATTCGAAGTGGCTCTCTGTGTGCAACAAATATCACTTGCAGAAACTAGAACTTCATTATTTCTTCATAAAATTTCATTGTAGTATCTATGTTTTCAATGTCTAACATTTTTCACGCTCTCCCGCATTGGCTCGGATTCAGTACCTAAATAGATTTGCACATCTATTAAACCACCAGTAATATTTTGATCACCATTATGCTATATGCATTAAATTGCATAAATATATGTACATCTGGTTTGGCCGTGTGCAGAGTAAGCGAGACTACCTTGAAAGAGAAAGCTCGATCCCAGAAACATTTGCAGTATAATGTGTTAATCCAAGGATTCTTGTCATGTCAACAGGTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAG</genome_strand>
        <mrna_strand>CGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706283" ref_strand="+" ref_description="SGN-E706283 [FA29CB05]">
      <seq>cgaaaaatcaagatttctccttttgaatgatggtagcaatttagtattgagctgagaataagaagaaagtgtaaaaattgatggggaattgttttggatcagagaatcttgatcctaatcctagtaacaaaagcaactcatcaactagaccttctaccccagatacatcaaagaactacagtggtggtgttggattttcgactagtagtagtactgggcgtagccgtttttcagcagctgcaagcgaggattcatgttcgaatggagaaatattgcctactccaaatttgaagacttacagtttttctgatctgaaggctgccacaagaaatttcaagtctgatacagttttgggggtgggaggctttgggactgtatttaaaggatgggtcgatgagaagacgcttactccaactaaagttggaactgggatggttgttgccatcaagaagttgaactcagagagcatgcagggatttgaagagtggcaggcagaagttaacttcttaggaaggctttcacacccaaaccttgttaaattgttgggatattgttgggaagacaaggaactgttacttgtatatgaattcatgccaaagggaagcttggagaaccatcttttcagaaggagcacagctattgaaccactttcttgggaagttgcggctcaaaattgccataggagcggcacgaggtttagcttttctacattcttcagaaaaagcagatcatttacagaaatttcaaggcctccaatataccttctcgaatggggaattaccatgcaaagttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="75143" stop="70623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74843" g_stop="74682" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74681" i_stop="74311" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74310" g_stop="73982" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="491" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73981" i_stop="72478" i_length="1504">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72477" g_stop="72342" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="627" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72341" i_stop="72259" i_length="83">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72258" g_stop="72116" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="774" r_length="147" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72115" i_stop="70943" i_length="1173">
            <donor d_prob="0.898" d_score="0.90"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70942" g_stop="70923" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="795" r_length="21" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E706283" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74843" e_stop="74682"/>
          <exon e_start="74310" e_stop="73982"/>
          <exon e_start="72477" e_stop="72342"/>
          <exon e_start="72258" e_stop="72116"/>
          <exon e_start="70942" e_stop="70923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAGGTACACACAAACATACTACCGTTTTCTCTTTGTAGGTTAAAAGGTTTGTTCTTTTTAGGAATGATTTTGTTCGAATTCCCAAATGGGGTTTTGCTTTTGCTATTTATGGGGAAAATTTTGGACTCTTTCTTGATTTTCTGTATGTCAAATATTCTACTCTTCTCTCTTTGTTGAGTCTATACTAAAGGACCCAAAATGGCTTCTGTTTCATTTTCTTGGCAATCAGAACTTTTGTTAGGACTAGTTGACCATAATTTAGAGGAGTAATTTATGTTGTTTGTAGTTTTTGGTAAAGCCCCTTTCAGATTTCATAGCTTTTAGCTTAATTGGGAGTAAAAAGACTAGATTTTTGGGATGTATTTTTTGTGCAGATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATGGTTGTTGCCATCAAGAAGTTGAACTCAGAGAGCATGCAGGGATTTGAAGAGTGGCAGGTATGAGAACTTTTGATACAATTTATAGGCATTTATTCTTTGCAGAATGTTGGACCTTCTTGGTGGAAGAAGCCAATAGTTTGACCTTTTTTGTTGGAGAAAGATCTTTCATTACACAAACTAGGAAAATGCCCATCAATGCAAAATGCATAAGCTACCTTGTTGCTGATCATTCAGGGACAATTATGTGGCATTGGTTGTTAAATATGCTGAATAATTTGGGTATCCTGTTTTTGGTTAACTATTATGTATGAAACATTTTCAGTTTATGTTCGTTAGTCAAGTAAAACCTGTAGTTAGACAGGCAAGTCAATGATTAGACAGTGTCTCTGTAACAAACTAGGATTGCCTCTTACATGGCTGAACTCTTTGATGAAGTTGAATGAATAAACTACTAAAGTGATATAAAAATGTATGTATTGATACATCTTTATAGGGGATTCAATCTTGAAGCAGTTATTGATACAGTTTTCAAGCTGAAAACACAGATATTGATCTTGTTAGTTCACATTGTGTACTGATTATACACAATTACTTGCTGAATGTAAAGTCCTCTGTTGGTTTGATTTGAGTTCATATTTCTCCATTTACATCCCAACGATACAGATAAAAAGTATGAGCAAAACTTTTGTAGTTTGCATAGCTATCTATACACAGATTTGTGAAATAATTTCTCATCTTGTTAGATTTGAGCTAACAATATCATATAATGTGTCAAACTTCCTCTCTTACTCCTAATCACACACTTTGAGCAATGAGTACTTATCTGCTTCCTGTTATAATACTACTTTGGTTTTTGTTGTTGAAACAATTTCTAGCAACTTCAAGTTAACTTGTTGCTGAACAGATTTTCTGCAACTGTATAGTGGCCCAATATTTAATTGATGTCTACAGGTAATTGTAGTGTGCAGAGATATGAATAGTATAAGAGCTATCTGGCGATTTATATTGAAGGCCTCTCCAAAATTGTGGTGTCAGACTTAGCAAATTTTATATCAGATAGGTAGTTTGTTGAGTGGATGAGGAAGAATACAGCCTCTGAACATCCAACATCCAGCCAACTCAGGAAAAAAATGAACTATTATAAAAAATTGACCCATATTTGGAATATGATTCGAAAAAAGATCAAGGGTTTCCATATGTATTATTGTTGCGATCTATACTAAGCAAGTGTACGTGGTCGACAAGTATTATTCCTATGAAGATTTATAACTAACTTCAGACTAAATTAAGCTGTTACTAACATCAATTGTGTCAGCTGTCACGGCCATTCCTGAAGTTGCGATGGGTGTACCTTCCTCTTTTAGAGAGAGACGTACTGTTTAGTTATTTAGGTTTCTTATTTAGCTATCAGGAGCGTGTACTTGAACTTTTCAATATTCTTGTTTTGTTTATCAACTAACTTCTGAATTGCTAGTTCACTTTAGAACTTTATATTATTTGTCATATATAGACTATAGTTAGATGCTTTAGCTAACACTCCTAATCTTTCAATTAACTGCAGGCAGAAGTTAACTTCTTAGGAAGGCTTTCACACCCAAACCTTGTTAAATTGTTGGGATATTGTTGGGAAGACAAGGAACTGTTACTTGTATATGAATTCATGCCAAAGGGAAGCTTGGAGAACCATCTTTTCAGAAGTAAGAAGTTCTGTACTAGAGTTTCAACCGAAACAAGGTTAATAATGATATGATGCACTGATCTCTGTTATGTTGCTTTGCAGGGAGCACAGCTATTGAACCACTTTCTTGGG-AGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAG-AAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATA-CTTCTCG-ATGGGGTACAATCTTTTGACTTGCGATTCATTTGGTAGGCCAGTATTCTAAAACAATATAACAATAAGAGAATAATGACAAACAAAAGCTAGATTCAAGAGTCAGCTACTACATTGGTTGAACCAGTGGTGAAGACACCCTTTAGTAATGTGGGTAATCCGACACCGTTTTGCACAATTCTTTGTTAACAAGTTGACTAAATTTGTATATGTACAGTAGGTCGGTCCTACTTGTAAAGTATGCGAGGCAATTATATATTTTGGTACACAAAGTGATGTCTTAAAACTCACAATCCCAGACCTAAACCCACTCACAAACCGAATAGTTACTAACTGATCTCTCTTAAAATCATGCATATGCCATTGCCCCTAGGTTTTGGCCTAGTGCTAAGAGCATAGAGCAAGGTGTGTGTTAGGCGCACGTCATTCGTTCAAACCTTGTACTAGACAAAAGCTTGGTATGCTCAGTATTTGAGTGAAGGTAGAGGGGTACCCATCAAGCTTCGAACCATGCAGCACTGTTCCTTGGGAATTTCTTGATTATCAAAAATAAAATAATATCCTGCATATGCAAATTACTTTGACATATACTTGTTTCATATCCAATGCACTTGATACATCTTGTTATTAGCTTGTAATTTGGGTCAGTGGTAGTTTGATTGCCATTGTTTGTTTTTATTTTCTCTGTTTGGAGTACAGGTATGTGACTCTACTATAGCTTAGTGCATATCCCTTACGTTTCCTTTATCTTTTTTTACTTACTTTCACATAATTGAAACATGAGCAAGACCTAGAATCGGCTGGATTTCTGAAATTAATTATCTATTATATGTTGGTCTTTGGAGGATTCTCTTTCCATATGGTTCCCCAGTATTTCTCAAGGAGGCTGTGAGTTTATGTGATGATATGAGTAATAATACTGAACTTGAACGTTTTGTTCTGTTTAATATCATCAAAATCCCTTATCTGATCTCATATTGTTTTTCCTTTTCCGATGGAACTAAATGAAAGTACAAGTACGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTATGTTTTTCTTCAATAGATTTTCCTCCTTTCCAACTTTTATGTACATCTGCATAAGGGCCAAATTTTGAAGGTCTTCTATTTTTCTGTTTGCAG-AGTTACCATGCAAAGTTATC</genome_strand>
        <mrna_strand>CGAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATGGTTGTTGCCATCAAGAAGTTGAACTCAGAGAGCATGCAGGGATTTGAAGAGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGTTAACTTCTTAGGAAGGCTTTCACACCCAAACCTTGTTAAATTGTTGGGATATTGTTGGGAAGACAAGGAACTGTTACTTGTATATGAATTCATGCCAAAGGGAAGCTTGGAGAACCATCTTTTCAGAA...................................................................................GGAGCACAGCTATTGAACCACTTTCTTGGGAAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAAGCAGATCATTTACAGAAATTTCAAGGCCTCCAATATACCTTCTCGAATGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTACCATGCAAAGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313125" ref_strand="+" ref_description="SGN-E313125 [cTOA-18-G15]">
      <seq>agcaatttacagttgaaaattttggcgcattatatcttataatataatatgagaggaatcaacaacaatattagtagcttttccctaaattccaccgctttttgtcaaaagtttcaactttgctctaaaaatcaagatttctccttttgaatgatggtagcaatttagtattgagctgagaataagaagaaagtgtaaaaattgatggggaattgttttggatcagagaatcttgatcctaatcctagtaacaaaagcaactcatcaactagaccttctaccccagatacatcaaagaactacagtggtggtgttggattttcgactagtagtagtactgggcgtagccgtttttcagcagctgcaagcgaggattcatgttcgaatggagaaatattgcctactccaaatttgaagacttacagtttttctgatctgaaggctgccacaagaaatttcaagtctgatacagttttgggggtgggaggctttgggactgtatttaaaggatgggtcgatgagaagacgcttactccaactaaagttggaactgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="75266" stop="73739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74966" g_stop="74682" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74681" i_stop="74311" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74310" g_stop="74039" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="558" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E313125" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74966" e_stop="74682"/>
          <exon e_start="74310" e_stop="74039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGA-AGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAGGTACACACAAACATACTACCGTTTTCTCTTTGTAGGTTAAAAGGTTTGTTCTTTTTAGGAATGATTTTGTTCGAATTCCCAAATGGGGTTTTGCTTTTGCTATTTATGGGGAAAATTTTGGACTCTTTCTTGATTTTCTGTATGTCAAATATTCTACTCTTCTCTCTTTGTTGAGTCTATACTAAAGGACCCAAAATGGCTTCTGTTTCATTTTCTTGGCAATCAGAACTTTTGTTAGGACTAGTTGACCATAATTTAGAGGAGTAATTTATGTTGTTTGTAGTTTTTGGTAAAGCCCCTTTCAGATTTCATAGCTTTTAGCTTAATTGGGAGTAAAAAGACTAGATTTTTGGGATGTATTTTTTGTGCAGATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATG</genome_strand>
        <mrna_strand>AGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAGAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324330" ref_strand="+" ref_description="SGN-E324330 [cTOC-6-E5]">
      <seq>aaacttcaactatcagcttaattaggaaaccacactgtaaaatcccagcaatttacagttgaaaattttggcgcattatatcttataatataatatgaaggaatcaacaacaatattagtagcttttccctaaattccaccgctttttgtcaaaagtttcaactttgctctaaaaatcaagatttctccttttgaatgatggtagcaatttagtattgagctgagaataagaagaaagtgtaaaaattgatggggaattgttttggatcagagaatcttgatcctaatcctagtaacaaaagcaactcatcaactagaccttctaccccagatacatcaaagaactacagtggtggtgttggattttcgactagtagtagtactgggcgtagccgtttttcagcagctgcaagcgaggattcatgttcgaatggagaaatattgcctactccaaatttgaagacttacagtttttctgatctgaaggctgccacaagaaatttcaagtctgatacagttttgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="75312" stop="73815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75012" g_stop="74682" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74681" i_stop="74311" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74310" g_stop="74115" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="527" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E324330" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75012" e_stop="74682"/>
          <exon e_start="74310" e_stop="74115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAACTATCAGCTAAATTAGGAAACCACACTGTAAAATCCCAGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAGGTACACACAAACATACTACCGTTTTCTCTTTGTAGGTTAAAAGGTTTGTTCTTTTTAGGAATGATTTTGTTCGAATTCCCAAATGGGGTTTTGCTTTTGCTATTTATGGGGAAAATTTTGGACTCTTTCTTGATTTTCTGTATGTCAAATATTCTACTCTTCTCTCTTTGTTGAGTCTATACTAAAGGACCCAAAATGGCTTCTGTTTCATTTTCTTGGCAATCAGAACTTTTGTTAGGACTAGTTGACCATAATTTAGAGGAGTAATTTATGTTGTTTGTAGTTTTTGGTAAAGCCCCTTTCAGATTTCATAGCTTTTAGCTTAATTGGGAGTAAAAAGACTAGATTTTTGGGATGTATTTTTTGTGCAGATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGT</genome_strand>
        <mrna_strand>AAACTTCAACTATCAGCTTAATTAGGAAACCACACTGTAAAATCCCAGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="75510" stop="76572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75810" g_stop="76254" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75810" e_stop="76254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACACAAAAAATAGTTTAATTGTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAAACAAAATAAGAATAAAAAATTCAAATAATGATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATCAAAATATACTTTGAAATTTGATAGAAGAATCATATATGTCCCTAAATAATTTTTTT-TAAAAAAA-TAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCTGTTAAATAAAGGGTATATATGAGTCATTTTGTAACTGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGGGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCATT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATT-TTTTTTATTTAAACTAAGGAATGAAAG-AAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346256" ref_strand="+" ref_description="SGN-E346256 [cTOF-23-O10]">
      <seq>ttgcaagaagcaagattattaccaagctatagctgctgaggtgaaggaaggaggttatgaatctgactaccgtgcttcccctccacctcgtccaaagagggcccagaacaaagatcaaatggagtacacagagatactgaagatgcgcggtctcccttaccgttgtaagaaatctgatatcctcaagttttttggtgatgaatttaaccttacagatgacaagataaacattacctaccgctcggatggaaaagctactggtgatgcttatgtggagtttgcatcggctgaggaggcaaagaaagctatgtgcaaggacaatatggagattggatcaaggtacatcgagctatttccttcatatccagatgaagcaagacaaggtggatcaagatcacgacgatgatggagaagatctcctagtatgaaatttttcattttgggtttagacattaagtccagttaaagactttctcaccctgttcccgtattatgttttctacacaatatatatgaacctgtggaagttatcgaactgtccgtcttggatgtcttagttgtggtatcggccaactcactttcaactcttgtgccatcaattgattgtctttttggntgtgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="86989" stop="85776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86689" g_stop="86058" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E346256" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86689" e_stop="86058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAACCTGTGGAAGTTATCGAACTGTCCGTCTTGGATGTCTTAGTTGTGGTATCGGCCAACTCACTTTCAACTCTTGTGCCATCAATTGATTGTCTTTTTGTTGTGTTGTTTCGTTATG</genome_strand>
        <mrna_strand>TTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAACCTGTGGAAGTTATCGAACTGTCCGTCTTGGATGTCTTAGTTGTGGTATCGGCCAACTCACTTTCAACTCTTGTGCCATCAATTGATTGTCTTTTTG-GNTG-TGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354472" ref_strand="+" ref_description="SGN-E354472 [cTOS-17-H4]">
      <seq>ttattaccaagctatagctgctgaggtgaaggaaggaggttatgaatctgactaccgtgcttcccctccacctcgtccaaagagggcccagaacaaagatcaaatggagtacacagagatactgaagatgcgcggtctcccttaccgttgtaagaaatctgatatcctcaagttttttggtgatgaatttaaccttacagatgacaagataaacattacctaccgctcggatggaaaagctactggtgatgcttatgtggagtttgcatcggctgaggaggcaaagaaagctatgtgcaaggacaatatggagattggatcaaggtacatcgagctatttccttcatatccagatgaagcaagacaaggtggatcaagatcacgacgatgatggagaagatctcctagtatgaaatttttcattttgggtttagacattaagtccagttaaagactttctcaccctgttcccgtattatgttttctacacaatatatatgaaactgtggaaagtatcgaactgtccgtcttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="86974" stop="85840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86674" g_stop="86140" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E354472" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86674" e_stop="86140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAACCTGTGGAAGTTATCGAACTGTCCGTCTTGGAT</genome_strand>
        <mrna_strand>TTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAAACTGTGGAAAGTATCGAACTGTCCGTCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346094" ref_strand="+" ref_description="SGN-E346094 [cTOF-34-A9]">
      <seq>ttttgactatgataacagatgtcagccttctgcctttcctgttgttcgtttaaggggtcttccatttgattgcactgaaattgacatttacaagttctttgctggcctggacattgtggatatttttgtggtcaacaaggatggtaggttctctggagaagcatttgttgtctttgctggtcacattcaagtggattatgctcttcggagggatagacagaacatggggaggagatatgtagaggttttcagttgcaagaagcaagattattaccaagctatagctgctgaggtgaaggaaggaggttatgaatctgactaccgtgcttcccctccacctcgtccaaagagggcccagaacaaagatcaaatggagtacacagagatactgaagatgcgcggtctcccttaccgttgtaagaaatctgatatcctcaagttttttggtgatgaatttaaccttacagatgacaagataaacattacctaccgctcggatggaaaagctactggtgatgcttatgtggagtttgcatcggctgaggaggcaaagaaagctatgtgcaaggacaatatggagattggatcaaggtacatcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="87241" stop="86040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86941" g_stop="86340" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E346094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86941" e_stop="86340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGC</genome_strand>
        <mrna_strand>TTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722165" ref_strand="+" ref_description="SGN-E722165 [FC16BG04]">
      <seq>gcggccaaatcggccgaattgataatacaattgagcgctttcggggcctttaccagcacttgttcgctagggtttccgtgcaaatttttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaaggggggcaatgttggggagcggggggttttcaaacgggtacgagatcggctcaaagagaccaagaatgatggaatcaaatccctacttcgcagtgaacagcagtgcaagtggctatcagcaggcttttgactatgataacagatgtcagccttctgcctttcctgttgttcgtttaaggggtcttccatttgattgcactgaaattgacatttacaagttctttgctggcctggacattgtggatatttttgtggtcaacaaggatggtaggttctctggagaagcatttgttgtctttgctggtcacattcaagtggattatgctcttcggagggatagacagaacatggggaggagatatgtagaggttttcagttgcaagaagcaagattattaccaagctatagctgctgaggtgaaggaaggaggttatgaatctgactaccgtgcttcccctccacctcgtccaaagagggcccagaacaaagatcaaatggagtacacagagatattgaagatgcgcggtctcccttaccgttgtaagaaatctgatatcctcaagttttttggtgatgaatttaaccttacagatgacaagataaacattacctaccgctcggatggaaaagctactggtgatgcttatgtggagtttgcatcggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88641" stop="86099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88339" g_stop="88210" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="150" r_length="129" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88209" i_stop="87062" i_length="1148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87061" g_stop="86399" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="813" r_length="663" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E722165" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88339" e_stop="88210"/>
          <exon e_start="87061" e_stop="86399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACAATTGAGAGCTTTCTGGGCCTTTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAATAATTTTTTTTTGCATCAAGATGAATAATAGTTACAAAAGCTTAGGAGCAAAAGGTCAACTCTCCTTTACATTATTAATTAAGAATCAGGGAGTGGACATAGTTCAGAAAGGAATCAGGGCAATCTAGAAGAGATAAATAAACCCAACTATACAAAAACATGAGGCAGTTAGCTTTTAAAGATTGGTATCCTGGCTTGGAATGTTTAGGTGATTTCACCCTTTTTTTATGTGATGGTGGAAAACTTTTGGGTTATGATCGTGTTCTTCAGCATGATTATCTGCCTTATCTAGCTACTTCGTTTTTGTTGCTAGATATATTAAGAACATATTGAAGGTTAAGAAATAACCCCTTTAAACTTGATAATTTTATGGTTCTGGTTTATGCTTAGGTATTGATTTCTCCTGATGTCTCCAATTTATGTGTTTTATTATCTTTTAATTATGCTTGTCGGTTGGAAGCATGTATGCAATGTTGTGTTTTTGTTTGGAGAAAAGTAGTATATGAAACTAGGTGGTAGGAGAAAATATGGGTCGGGTTTGGTTTCTTATTAACAAGGTTGAGTGGGGGAATTGTTTTTTTTTCTTTTCTGGGTATCAATAATGAAGGGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGA</genome_strand>
        <mrna_strand>ATAATACAATTGAGCGCTTTCGGGGCCTTTAC-CAGCACTTGTTCGCTAGGGTTTCCGTGCAAATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGTTGGGGAGCGGGGGGTTTTCAAACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATATTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251935" ref_strand="+" ref_description="SGN-E251935 [cLEG-14-B15]">
      <seq>aagaatgatggaatcaaatccctacttcgcagtgaacagcagtgcaagtggctatcagcaggcttttgactatgataacagatgtcagccttctgcctttcctgttgttcgtttaaggggtcttccatttgattgcactgaaattgacatttacaagttctttgctggcctggacattgtggatatttttgtggtcaacaaggatggtaggttctctggagaagcatttgttgtctttgctggtcacatttcaagtggattatgctcttcggagggatagacagaacatggggaggagatatgtagaggttttcagttgcaagaagcaagattattaccaagctatagctgctgaggtgaaggaaggaggttatgaatctgactaccgtgcttcccctccacctcgtccaaagagggcccagaacaaagatcaaatggagtacacagagatactgaagatgcgcggtctcccttaccggtgtaagaaatctgatatcctcaagttttttggtgatgaatttaaccttacagatgacaagataaacattacctaccgctcggatggaaaagctactggtgatgcttatgtggagtttgcatcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="87304" stop="86102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87004" g_stop="86402" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E251935" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87004" e_stop="86402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACA-TTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGC</genome_strand>
        <mrna_strand>AAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGGTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331781" ref_strand="+" ref_description="SGN-E331781 [cTOD-7-M11]">
      <seq>ttacacagcacttgttcgctagggtttcggtgcagatttttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaaggggggcaatgttggggagcggggggttttcagacgggtacgagatcggctcaaagagaccaagaatgatggaatcaaatccctacttcgcagtgaacagcagtgcaagtggctatcagcaggcttttgactatgataacagatgtcagccttctgcctttcctgttgttcgtttaaggggtcttccatttgattgcactgaaattgacatttacaagttctttgctggcctggacattgtggatatttttgtggtcaacaaggatggtaggttctctggagaagcatttgttgtctttgctggtcacattcaagtggattatgctcttcggagggatagacagaacatggggaggagatatgtagaggttttcagttgcaagaagcaagattattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88611" stop="86368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88311" g_stop="88210" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88209" i_stop="87062" i_length="1148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87061" g_stop="86668" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="496" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E331781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88311" e_stop="88210"/>
          <exon e_start="87061" e_stop="86668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAATAATTTTTTTTTGCATCAAGATGAATAATAGTTACAAAAGCTTAGGAGCAAAAGGTCAACTCTCCTTTACATTATTAATTAAGAATCAGGGAGTGGACATAGTTCAGAAAGGAATCAGGGCAATCTAGAAGAGATAAATAAACCCAACTATACAAAAACATGAGGCAGTTAGCTTTTAAAGATTGGTATCCTGGCTTGGAATGTTTAGGTGATTTCACCCTTTTTTTATGTGATGGTGGAAAACTTTTGGGTTATGATCGTGTTCTTCAGCATGATTATCTGCCTTATCTAGCTACTTCGTTTTTGTTGCTAGATATATTAAGAACATATTGAAGGTTAAGAAATAACCCCTTTAAACTTGATAATTTTATGGTTCTGGTTTATGCTTAGGTATTGATTTCTCCTGATGTCTCCAATTTATGTGTTTTATTATCTTTTAATTATGCTTGTCGGTTGGAAGCATGTATGCAATGTTGTGTTTTTGTTTGGAGAAAAGTAGTATATGAAACTAGGTGGTAGGAGAAAATATGGGTCGGGTTTGGTTTCTTATTAACAAGGTTGAGTGGGGGAATTGTTTTTTTTTCTTTTCTGGGTATCAATAATGAAGGGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTAC</genome_strand>
        <mrna_strand>TTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330317" ref_strand="+" ref_description="SGN-E330317 [cTOD-4-D10]">
      <seq>tagggtttcggtgcagatttttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaagggggtaagtttatcttacttgattcattcttctcctatctgttcatgtgggtgttctttctttttctatgtcgatgtttgttttcaaattttgtttgtagcagttgacgaatttatatgatgctttctgtttgtgccttgtagtaattaattattgattctttttctaggttgattttgcctttagattgtaaaattaacactttcttttgctatatatgggagggtgaattcgatagcatggggtttctgagctgctctagcatgcttgttacttcaagattatcctttgattgtttcaacaccataactgaaggataaattacagttacatgtatctataacaattatcctatatattaacggttcattataacccccaagttttttttcttttggtgttttatgatctttataacaacattatgatatagcatccaagtaatatccgttatagagaagtttgcctctacaccttttcagggagttgtggatttctggttcaaaaataaagttactgatctctangaagttcttactagcaataatttttttttgcatcaagatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88592" stop="87343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88292" g_stop="87643" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E330317" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88292" e_stop="87643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAATAATTTTTTTTTGCATCAAGATGAAT</genome_strand>
        <mrna_strand>TAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTANGAAGTTCTTACTAGCAATAATTTTTTTTTGCATCAAGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323205" ref_strand="+" ref_description="SGN-E323205 [cTOB-28-M1]">
      <seq>ttgattttcgcttcatctgaatcgttttctgcaaacttgcgaagctatgtacggatcaagggggtaagtttatcttacttgattcattcttctcctatctgttcatgtgggtgttctttctttttctatgtcgatgtttgttttcaaattttgtttgtagcagttgacgaatttatatgatgctttctgtttgtgccttgtagtaattaattattgattctttttctaggttgattttgcctttagattgtaaaattaacactttcttttgctatatatgggagggtgaattcgatagcatggggtttctgagctgctctagcatgcttgttacttcaagattatcctttgattgtttcaacaccataactgaaggataaattacagttacatgtatctataacaattatcctatatattaacggttcattataacccccaagttttttttcttttggtgttttatgatctttataacaacattatgatatagcatccaagtaatatccgttatagagaagtttgcctctacaccttttcaggaagttgtggatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="88572" stop="87414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88272" g_stop="87714" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E323205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88272" e_stop="87714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTG</genome_strand>
        <mrna_strand>TTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGAAGTTGTGGATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347808" ref_strand="+" ref_description="SGN-E347808 [cTOF-26-B20]">
      <seq>ccgttgagagttatcttcttgaatccctgatcaaatctgcaattcgtcgacgttgatgccggagtaacagtggcatggcggaggcattggccattgcagtaggaaaatacacatacgtacatgaagtgggtaaaggcccacctgaagccattgacgctcaccatattgtggttcgaaggagtagagaaaagggtttcaatttatgcctatttactcttctcctttttgcctatcccacctttctgttattccggcagggaaagctagatactcttcatatttggagcttagttatcatgacattgcttatgaggttatttctaaagaagccagttaagaaagagtctgttctaattcttccagcttttggagttcaacttgagactcagtatggaagtgggaaaacagttcgccagtttgtccccatcagcaggattttgaaaccagtgctgacagaatgtgtcacaccaatcacctgttattggagtctgtctttgattattcgaggagaggaagaacttatgctagtattcaaggaattacgtccaccagtgaagatgttagcgcccatctggaaggctttatgtgctgccattgaatgtggagaatgcacggagacgattacatagattgtaatagtataatctcaaccaattcaattctagtataaattttttttccagcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="96736" stop="100999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97036" g_stop="97292" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97293" i_stop="97761" i_length="469">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97762" g_stop="97846" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="342" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97847" i_stop="99446" i_length="1600">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99447" g_stop="99501" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="397" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99502" i_stop="100146" i_length="645">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100147" g_stop="100285" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="536" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100286" i_stop="100547" i_length="262">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100548" g_stop="100699" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="688" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E347808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97036" e_stop="97292"/>
          <exon e_start="97762" e_stop="97846"/>
          <exon e_start="99447" e_stop="99501"/>
          <exon e_start="100147" e_stop="100285"/>
          <exon e_start="100548" e_stop="100699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGAGAGTTATCTTCTTGAATCCCTGATCAAATCTGCAATTCGTCGACGTTGATGCCGGAGTAACAGTGGCATGGCGGAGGCATTGGCCATTGCAGTAGGAAAATACACATACGTACATGAAGTGGGTAAAGGCCCACCTGAAGCCATTGACGCTCACCATATTGTGGTTCGAAGGAGTAGAGAAAAGGGTTTCAATTTATGCCTATTTACTCTTCTCCTTTTTGCCTATCCCACCTTTCTGTTATTCCGGCAGGTAAATTATACCTTCATCTTCCTTGCCAAGCCAATCTCGTTGTTTCCTTATTTCATTTCATTTCAAATTAGAGTTCATCAGCCCTAGAAATGTAATCTCTAATGGAACTCTTAGTTCACATAATGCTGGTATTTATGATATTAGTAATAGTACTACCAGTTTATGTAAAGTGTGATTCTTTTCCCCAATTTATACTGCCTCTCTTGCTAGTTCTGAAGAATTTTATCATCTGGCTTGAAAATTGCAATTAGGGGTTTCCGTTTTCCTGGAATTAGAAGGAAGAGGGTAGGATAATACTCACTTTTTCTATCCTCAATAGCTTTAGCAATGATAATAGTATTTTGTTTGTGGTGGTTAATCATTTGGGGTTTTAAGTCTGTTAAAGATGTAGCTGGGGTCAAAACTTGGTTCATCTGAATTATGAAGTAAAAACATTGTGTTTGATTTGATGGGAGGTCTTTTAATGCAGGGAAAGCTAGATACTCTTCATATTTGGAGCTTAGTTATCATGACATTGCTTATGAGGTTATTTCTAAAGAAGCCAGTTAAGAAAGGTGAGGATGTGTAACTTCTATTAATTTGTACAGCTTATATTGTGCATTTTCCAGATTTAATCACATCCACTGTTATATGGGTCGGTATGAAATCCCTTCAGCTGGAAATCACTGCCGTTGCACTTTGTATTGATGCACATTGTGTGAGAAGGTCAAAATCTGTGACCAAAACTCATTAAATATTCCATGTCCTTCTCACTCGGTAGCTTCAGTTAGTACCTTGGATATAATACCTTTCGCCTTAGAATTGTCTGTCAATAGGAATTGAAGTATTATCTATCATAGTAGGTAAAAGTTCTTGACAGAGTTTTAATATGGTAGTTGATATAGCTTAACCTTTAATCAGTTTTAAACCCAGCATATGCAGTGGTAAATATTGATTGTTGTATGGTATCACTGAAATGAATATACTAATATTTGCTGTATTTTTGTAGTTATTATGTTCTAGTTTCTTGCAAACGATTGATTAAAGTTTGATAATCAGTGTCTGGCGATCTGGGGATCATTACATTCCCCTTATCCTTGTATATATATGTGTGCGCACGGATTTGTATGTACGTATATGTTTCCAAATAACTAGGATTTCAGGACCTTAGTATCGAAAGCCAACAAAAGGAGCTGGGTAAATATAAATAATGTGTGTGAGTTTGTTTGTGCGTGTAATTCTTGCTTGTTTCCGGCATCAAAAAGTTTGCTAGAACACAGAAACTATATGCTAAGAGGAAATTTTATTTGGAACCAAGATGATGGGGCATCCATTTGTGGTTCATGTACAATCTATCAATCAACTATATCTCGGTCACAAGTTAGTTGGTTTCCCATCTGTGAGTTCTGAATCATTTTGGGACAATTTTATTAAATCTGGTAAAGAGATTTTCTTCCAACGCAAATTTTAGGCTCTCTTGAAACTAAAGGTTTTCTGAATCACCCTTACCCCTGCCAGGACATAATGTTAAGTGTAATAAGAGCAACTAAATCTTAATCTTAATTTGTTGCTATTGCTTATACAGATCCATTACTATGTTCTTATTTGTTAAGTTCAAACTGGTCGTACAGATTGTAGGTCATTTGGAGACAACTTCACTCCATGTAGTTCTAGGTATACCTTGTCCTTCTTAGCACCTTCAAGCAACATAGTGTCACACCTATGGACAAGTGCATTTTGAGGTTGACGTAAGACATGCCTAAACTATCTCAAACAATATTCTTTCGTTTTATACTATATTTGTGCATTTGTGGTCTGTTTGTAATCATTTCTGGCTTTATCTTATATGGCCCCACATCTATCTAGAAATCGTTATTTCCACCATGACTATTCTAGTGGATATGTTTGGCCTTGCTGCCCAATATATCACCCCAATGTCACATTGCTGGTCTCATAGTTTTTTACAAAACTTGCCTTTTACTTTGTAGGAATATTCATATCACGTTGTATTTCATGTACCATACCTTCTTAATTCTCAAATATTTTGTGGATGCTTTATTGATTTAGCTTCTTCCCTTATAAAAGATAGTATAATGAATACGCTAGTATCATTTGGTTCTGGGATGTATTCACCAACTTATATTTCATTCTGTATCTTGTGTTTGCTTATGACAGAGTCTGTTCTAATTCTTCCAGCTTTTGGAGTTCAACTTGAGACTCAGTATGGAAGGTACTTACTGCTCCTGTGTAGAGGTGAATGTTTTGCTATTTGCTTAAAGTGAATTGTAAAATAATTTTCAACACTGTGATGCTTTTAAAAACCCTTTGGGGTGGCCCAATGGTTTGAGCTTGGGACTTTCATGTTGGAGGTCTCAACTTCAAAACCCCTTGCTAGCGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCGTCGCAATAGGCTTGGCTAGTGCGGGTTACCTCTCCTACGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTGTTTATGTTTCCTTAAAGATTGCTGTGCATACGGCAACTTGTTTCTTAGTCTCTTTTCTGAGATGTTTAACTATGTTACATAAACAAGTAGAAGTGTTTAGTGTATTACTTTTGTTCTGTGCCTAGATTCTCTGTGTGCACTGCTCAAGTTATTTTCCTATATGAAATTGGACAGATGAAGTTCTTATTGCATCCAAGTTGAAAATGATTAATTTCTTAGAATCACTTGAATATATTTTGATGATACCGTTTACATGGAACCATGAGGGTACCATTTTACAATTCTTGTATCTGATCTGAGAAACTCCTACCTGTTGTTTTCAGTTTTATGTTTATCAAAATAAAATTCTAATTCAGCCCTTTGTATTTAGTGGGAAAACAGTTCGCCAGTTTGTCCCCATCAGCAGGATTTTGAAACCAGTGCTGACAGAATGTGTCACACCAATCACCTGTTATTGGAGTCTGTCTTTGATTATTCGAGGAGAGGAAGAACTTATGCTAGTATTCAAGGTGAAATTTCTATCCCTGCTATATTTATCTAGCAAATCCTTAGCAATCTTCATACTCGTATCTTTGTAGTTGAAAAATAGCCCTTCAAAATGAGATGTCCAGTTTCTAGCTTCGAATTTTGTTTGCTTTTTGGTTGGAATTTAAGATAGAACAAACAAAGGAAAGGACTTTTAATCAACACAAAGGACTTGGTAGAGAATATAACTCCAGTTTTTTTTTTCTCTTACTTACACAATTTGCTGTATTCTAATATAATATCCAGGAATTACGTCCACCAGTGAAGATGTTAGCGCCCATCTGGAAGGCTTTATGTGCTGCCATTGAATGTGGAGAATGCACGGAGACGATTACATAGATTGTAATAGTATAATCTCAACCAATTCAATTCTAGTATAAATTTTTTTTCCAGCATTT</genome_strand>
        <mrna_strand>CCGTTGAGAGTTATCTTCTTGAATCCCTGATCAAATCTGCAATTCGTCGACGTTGATGCCGGAGTAACAGTGGCATGGCGGAGGCATTGGCCATTGCAGTAGGAAAATACACATACGTACATGAAGTGGGTAAAGGCCCACCTGAAGCCATTGACGCTCACCATATTGTGGTTCGAAGGAGTAGAGAAAAGGGTTTCAATTTATGCCTATTTACTCTTCTCCTTTTTGCCTATCCCACCTTTCTGTTATTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGCTAGATACTCTTCATATTTGGAGCTTAGTTATCATGACATTGCTTATGAGGTTATTTCTAAAGAAGCCAGTTAAGAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGTTCTAATTCTTCCAGCTTTTGGAGTTCAACTTGAGACTCAGTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAAACAGTTCGCCAGTTTGTCCCCATCAGCAGGATTTTGAAACCAGTGCTGACAGAATGTGTCACACCAATCACCTGTTATTGGAGTCTGTCTTTGATTATTCGAGGAGAGGAAGAACTTATGCTAGTATTCAAG......................................................................................................................................................................................................................................................................GAATTACGTCCACCAGTGAAGATGTTAGCGCCCATCTGGAAGGCTTTATGTGCTGCCATTGAATGTGGAGAATGCACGGAGACGATTACATAGATTGTAATAGTATAATCTCAACCAATTCAATTCTAGTATAAATTTTTTTTCCAGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E557084" ref_strand="+" ref_description="SGN-E557084 [cTSD-3-L17]">
      <seq>attacattaatgggagcctcttgatttatggagtgtgttatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcaggttgaagtctttgtaacaactgatatataattttttttgtatacatcactctgaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103644" stop="102845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103344" g_stop="103148" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103147" i_stop="102913" i_length="235">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.332" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102912" g_stop="102901" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="209" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E557084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103344" e_stop="103148"/>
          <exon e_start="102912" e_stop="102901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAGAACGCCGTTCCCTTTTTGTCTTGTTGTGTCTTAATGGATTGTATTGGTTCTTTCTTTTTGTCTACATATTCAACCACTGTTATATTATAAGGTGTCTGTCTCTATAAGGGACAATTTTTGTTGCTAAGAGGTGAATGGTGATATTGTCAATTACACTGTCACCAGTTCAAATCCTAGTGACCTAAACTCTTTAATTTTGTGCAAGAACAAAAAAGAA</genome_strand>
        <mrna_strand>ATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGT...........................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311120" ref_strand="+" ref_description="SGN-E311120 [cLEZ-16-O12]">
      <seq>atttatggagtgtgttatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcaggttgaagtctttgtaacaactgatatataattttttttgtatacatcactctgaagtatattagttgccacttatttttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103621" stop="102816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103321" g_stop="103112" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E311120" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103321" e_stop="103112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAGAACGCC</genome_strand>
        <mrna_strand>ATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311224" ref_strand="+" ref_description="SGN-E311224 [cLEZ-16-O8]">
      <seq>tatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcaagttgaagtctttgtaacaactgatatataattttttttgtatacatcactctgaagtatattagttgccacttatttttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103606" stop="102816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103306" g_stop="103112" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E311224" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103306" e_stop="103112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAGAACGCC</genome_strand>
        <mrna_strand>TATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAAGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374835" ref_strand="+" ref_description="SGN-E374835 [TUS-15-C13](-)">
      <seq>cccccgtatcagattacttgtgaattaattttggattgtgtttaagatttaattagattcaagtcattggtagatttagatgtattattttgattgattatcacgaggaaacgacctccaaaaggagaaattggcattagtccctgaaatatccctaggtgaagcttccacttgatttaatgatgttgacatttacaaaagaaactatccttcattccgctaacaaataagttggcccgtgttttattgaaggcctggaggaacaaagcaagctttacagcgttagtagtttatggcttcatttggactcaacattatcaatttaggaaaggatctttagcagcctgtagagaacattacattaatgggagcctcttgatttatggagtgtgttatgtacatttaaacatcaaaaaatttggattttgtggaggaagtttattttccatttccgcaggtaggaaaaaattctttttttttttgattttaactcaggttgaagtttttgtaacaactgatatataattttttttgtatacatccctttgaagtatattagttgccccttattttttttcagagaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103999" stop="102816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103699" g_stop="103115" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="609"/>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E374835" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103699" e_stop="103115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAGAAC</genome_strand>
        <mrna_strand>CCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTTTATTGAAGGCCTGGAGGAACAAAGCAAGCTTTACAGCGTTAGTAGTTTATGGCTTCATTTGGACTCAACATTATCAATTTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAAATTTGGATTTTGTGGAGGAAGTTTATTTTCCATTTCCGCAGGTAGGAAAAAATTCTTTTTTTTTTTGATTTTAACTCAGGTTGAAGTTTTTGTAACAACTGATATATAATTTTTTTTGTATACATCCCTTTGAAGTATATTAGTTGCCCCTTATTTTTTTTCAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394889" ref_strand="+" ref_description="SGN-E394889 [TUS-43-E3](-)">
      <seq>gtagagaacattacattaatgggagcctcttgatttatggagggtgttatgtacatttaaacctcaaaagatttggattctgtggaggaagtttattctccatttccgcaggaaggaaagaattcttttcttttttgattttaactcaggttgaagtctttgtaacaactgatatataattttaaaggtatacatcactctgaagtatattagttgccacttataaagtacagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103653" stop="102830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103353" g_stop="103132" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="234" polyA_stop="245"/>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E394889" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103353" e_stop="103132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTT</genome_strand>
        <mrna_strand>GTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGGGTGTTATGTACATTTAAACCTCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGAAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTAAAGGTATACATCACTCTGAAGTATATTAGTTGCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237385" ref_strand="+" ref_description="SGN-E237385 [cLEL-7-H7](-)">
      <seq>caaaaggagaaattggcattagtccctgaaatatccctaggtgaagcttccacttgatttaatgatgttgacatttacaaaagaaactatccttcattccgctaacaaataagttggcccgtgttctattgaaggcctggaggaacaaagcaagctctacagcgttagtagtctatggcttcatctggactcaacattatcaatctaggaaaggatctttagcagcctgtagagaacattacattaatgggagcctcttgatttatggagtgtgttatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcaggttgaagtctttgtaacaactgatatataattttttttgtatacatcactctgaagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103881" stop="102845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103581" g_stop="103140" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E237385" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103581" e_stop="103140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGT</genome_strand>
        <mrna_strand>CAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236947" ref_strand="+" ref_description="SGN-E236947 [cLEL-7-H7](-)">
      <seq>ttcattccgctaacaaataagttggcccgtgttctattgaaggcctggaggaacaaagcaagctctacagcgttagtagtctatggcttcatctggactcaacattatcaatctaggaaaggatctttagcagcctgtagagaacattacattaatgggagcctcttgatttatggagtgtgttatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcaggttgaagtctttgtaacacctgatatataattttttttgtatacatcactctgaagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103789" stop="102845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103489" g_stop="103140" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E236947" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103489" e_stop="103140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGT</genome_strand>
        <mrna_strand>TTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACACCTGATATATAATTTTTTTTGTATACATCACTCTGAAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364254" ref_strand="+" ref_description="SGN-E364254 [cLPP-20-I1]">
      <seq>ttagatgtattattttgattgattatcacgaggaaacgacctccaaaaggagaaattggcattagtccctgaaatatccctaggtgaagcttccacttgatttaatgatgttgacattcacaaaagaaactatccttcattccgctaacaaataagttggcccatgttctattgaaggcctggaggaacaaagcaagctctacagcgttagtagtctatggcttcatctggactcagcattatcaatctaggaaaggatctttagcagcctgtagagaacattacattaatgggagcctcttgatatggagtgtgttatgtacatttaaacatcaaaagatttggattctgtggaggaagtttattctccatttccgcaggtaggaaagaattcttttcttttttgattttaactcacgttgaagtctttgtaacaactgatatataatttttttttgtatacatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="103924" stop="102855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103624" g_stop="103155" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E364254" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103624" e_stop="103155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAA-TTTTTTTTGTATACATCACT</genome_strand>
        <mrna_strand>TTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTCACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCATGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAGCATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGA--TATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCACGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTTGTATACATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201725" ref_strand="+" ref_description="SGN-E201725 [cLEC-11-M11]">
      <seq>ggctcgatctaaagattactttgacagatatggagatttgaagaggatccggaggctgaagtatgggtctttagaaaaattacttatcgacaagttcaggttttctgaaattgatgctcttgaatttgccaaatttctttgtccccttcttgattttgagcctgagaatcgaccaactgcacagcagtgcttgcaacacccatggctcaacattaaaggtcaaaaccaaacagaggtgaagagtgaatctggtatggaaaaggttaatgttgggatgataaacctacaagtgaaggccggtaagtgatgtatgaatgaatggttggtcttctcactgcagcaccgctccattgccctctctcccccgtatcagattacttgtgaattaattttggattgtgtttaagatttaattagattcaagtcattggtagatttagatgtattattttgattgattatcacgaggaaacgacctccaaaaggagaaattggcattagtccctgaaatatccctaggtgaagctttcacttgatttaatgatgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="104360" stop="103209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104060" g_stop="103509" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E201725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104060" e_stop="103509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGAGAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACA</genome_strand>
        <mrna_strand>GGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGATAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTTCACTTGATTTAATGATGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374836" ref_strand="+" ref_description="SGN-E374836 [TUS-15-C13]">
      <seq>ggctcgatctaaagattactttgacagatatggagatttgaagaggatccggaggctgaagtatgggtctttagaaaaattacttatcgacaagttcaggttttctgaaattgatgctcttgaatttgccaaatttctttgtccccttcttgattttgagcctgagaatcgaccaactgcacagcagtgcttgcaacacccatggctcaacattaaaggtcaaaaccaaacagaggtgaagagtgaatctggtatggaaaaggttaatgttgggatgataaacctacaagtgaaggccggtaagtgatgtatgaatgaatggttggtcttctcactgcagcaccgctccattgccctctctcccccgtatcagattacttgtgaattaattttggattgtgtttaagatttaattagattcaagtcattggtagatttagatgtattattttgattgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="104360" stop="103300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104060" g_stop="103600" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E374836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104060" e_stop="103600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGAGAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTA</genome_strand>
        <mrna_strand>GGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGATAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200895" ref_strand="+" ref_description="SGN-E200895 [cLEC-5-I4]">
      <seq>attattcatacagacctaaaacttgaaaatgttcttttactttccacgataaatgccacaaaggatccaattagatcgggaacaccgcccatacttgaaaggcctgaagggatcccaaagggaggagcaactatgaatattattgagaaaaagctaaaacaaagggcaaggagggcagcagccaggatatccggtagacggtcttcaatgggtggggtaggaggaggtgcgaaaacaaatagaagtctcgatggtattgacttgaaatgcaaggttgtggattttggaagtgcatgctgggctgacaagcattttgcacaagaaattcagacacgacagtatagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="105331" stop="104384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105031" g_stop="104684" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E200895" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105031" e_stop="104684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGAGGAGGTGCGAAAACAAATAGAAGTCTCGATGGTATTGACTTGAAGTGCAAGGTTGTGGATTTTGGAAGTGCATGCTGGGCTGACAAGCAGTTTGCACAAGAAATTCAGACACGACAGTATAGATCT</genome_strand>
        <mrna_strand>ATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGAGGAGGTGCGAAAACAAATAGAAGTCTCGATGGTATTGACTTGAAATGCAAGGTTGTGGATTTTGGAAGTGCATGCTGGGCTGACAAGCATTTTGCACAAGAAATTCAGACACGACAGTATAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394890" ref_strand="+" ref_description="SGN-E394890 [TUS-43-E3]">
      <seq>attttttcatacatacctaaaacttgaaaatgttcttttactttccacgataaatgccacaaaggatccaattatatctggaacaccgcccatacttgaaaggcctgaagggatcccaaagggaggagcaactatgaatattattgagaaaaagctaaaacaaagggcaaggagggcagcttccaggatatccggtagactgtcttcaatgggtggggcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="105332" stop="104510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105032" g_stop="104810" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E394890" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105032" e_stop="104810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGA</genome_strand>
        <mrna_strand>ATTTTTTCATACATACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTATATCTGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCTTCCAGGATATCCGGTAGACTGTCTTCAATGGGTGGGGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331053" ref_strand="+" ref_description="SGN-E331053 [cTOD-6-O23]">
      <seq>tctgatcgatcatgtcaggttcaccgtcctcatcgtcggcatccgaagatgaagatgaaggaatcgattcgtacagaaaaggaggatatcatgccgtcagaatcggtgattcattttccggtggacgatatatcgctcagagaaaacttggctggggagaattctctaccgtttggctcgcttatgatactcgatcatccgaatttgtagctttgaagatccagaaaagtgcaccacaatttgctcaagctgctcttcacgaaattgaagtcctttctgctattgccgacggtgatacctctaatagtaaatatgttgttagacttattgaccattttaagcatacaggaccaaatggacagcattcatgcatggtccttgaatttcttggtgacagcttattgcgtctcgtcaaatataatcgttataaaggccttgagctggacaaagttagggaaatatgcaagtgcattctaattggtctagattatttgcacagggaacttggaattattcatacagacctaaaacttgaaaatgttcttttactttccacgataaatgccacaaaggatccaattagatcgggaacaccgcccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="-" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="107492" stop="104639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107192" g_stop="106993" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106992" i_stop="105341" i_length="1652">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105340" g_stop="104939" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="602" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="-" ref_id="SGN-E331053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107192" e_stop="106993"/>
          <exon e_start="105340" e_stop="104939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCGATCATGTCAGGTTCACCGTCCTCATCGTCGGCATCCGAAGATGAAGATGAAGGAATCGATTCGTACAGAAAAGGAGGATATCATGCCGTCAGAATCGGTGATTCATTTTCCGGTGGACGATATATCGCTCAGAGAAAACTTGGCTGGGGAGAATTCTCTACCGTTTGGCTCGCTTATGATACTCGATCATCCGTAACTTTTCTCTTTATTCATCAATAACTTCCTTCATTTCCTTTTCATTTTGTTGTTGATGCTTATTTGAGATCGTTATTTTCACGATTTGTGAAAAGTTTAGACTTAATTGATGAATATCATCTTTGTTTGTGGCTAACTTGTCGGTGATTGTTTAGATTAGATCACACCTTCATCAAGTAACTATACTGTCCAATTGGTGGATACTAATCAACTTTATTTTTTTCTGTCACGGAGGATTCTATTGGACTAAGTTGAATGAGTATGTTGTTAATATTGAGGGAAACTCAGCTTAGTCTTAGACCTATATAAAGGAGTGTCGTGTAGATTGATAGCCAGGTTAAATTAGTCTAAATATGATGAATACTGATTTAGGATCCTGAAATAGAGTGGAGTGGATGTACGGGTTTCGTATAGAAAATCCCAAAGTAGTTCATTGATCTATTGATTTATCGGTAGCAGCCAGGGATTTTGAAGTTGGACGGTTCAGATTGAATTTGTAGCATTCTGGCTACTAAGTTGTTGCACCACTTTTTGTCAGGATCTCTGAGGGCAATATTTCCCCATTAAAAATGACACTTAAGAGAAATCTTATAGACTTGTCTAATAATGGAAATAGATTCTTCTCTGATACCTTATGCTGCACTTGAACATATTGGGACATCTATTTTTGTTTTTTCTCCCACTGATGAGGTTCAGCCTTACCTATCTCCTTGTGTATCTGAATGATACTTTATGTTTCTTCATATCTATATGTTTGATGGCAGTTATAAACTGATTTTGCTTGATAGTTCACACCCTTCCAAAAACTTCCCTAACACAATCTGAAGTGAGGGTTCCTTTTCTTTTCTTCTTTTTTAGTTCACTCTTCTTGTCTATATCCGACCATCTCGAGCAAGTAAAATATGTTTCTTACTGCTTACAGACTGAAATAATCTCCATTTAGTTTTAGTCATTACCATTCGAACCATTTCTTTATGGTTTTAGACTTGACATATATTGCTTATATTTGTTATGAATAATATGCATATACGAGGTCAAATTGTGAGATCCGTGACCCAAAAAACAGTTTTAAGTCCTTGGTGCTGAGGATAACTTTATGTATGCTGTTGAAACATTGTTTGAAGACCCATGAGCCATCACAAAGTGTAAAAAATGTTTGGGATGCCTTTCATCTCCAAATGCCTTAGGATAAATTCTAAGCTCCATAGAGAATTAGGATTTGAAAGTTTCCATGTCAAAGCATTTATCTAGGGGGAAATTTGACCTGGTTTGGAGTCAACTGGTGATACTAGAATGATTAAAATATCAATGCATTAATTAGCTCGCATCATCAGGAAATTCAAGGATACTTTCTTGTTATGCAGAATAAGCACATGGAATTGTTTACCAATTCTCAAAAAAGAATAAGCACATGGAATTGCTCCTCTTTGGAGAATGTTTATTAAATATGTAACTGGTTGTAAGTCACCTAATAAGCACTGAAAAGATTCAATAAGATCTTGGTTCAAAACTAATTCCAATTTCCAACAAGCATGCACATTAGATTTCTTGTTCTGTATTCTCATTGTGGATGGTTTTGAAATTTATAGAATTTTTTGAATTGTTTTCTTGGACTCTAGAGCTTATTGTGCTTAACATTGTTTGGGTAGGAATTTGTAGCTTTGAAGATCCAGAAAAGTGCACCACAATTTGCTCAAGCTGCTCTTCACGAAATTGAAGTCCTTTCTGCTATTGCCGACGGTGATACCTCTAATAGTAAATATGTTGTTAGACTTATTGACCATTTTAAGCATACAGGACCAAATGGACAGCATTCATGCATGGTCCTTGAATTTCTTGGTGACAGCTTATTGCGTCTCGTCAAATATAATCGTTATAAAGGCCTTGAGCTGGACAAAGTTAGGGAAATATGCAAGTGCATTCTAATTGGTCTAGATTATTTGCACAGGGAACTTGGAATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATA</genome_strand>
        <mrna_strand>TCTGATCGATCATGTCAGGTTCACCGTCCTCATCGTCGGCATCCGAAGATGAAGATGAAGGAATCGATTCGTACAGAAAAGGAGGATATCATGCCGTCAGAATCGGTGATTCATTTTCCGGTGGACGATATATCGCTCAGAGAAAACTTGGCTGGGGAGAATTCTCTACCGTTTGGCTCGCTTATGATACTCGATCATCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTAGCTTTGAAGATCCAGAAAAGTGCACCACAATTTGCTCAAGCTGCTCTTCACGAAATTGAAGTCCTTTCTGCTATTGCCGACGGTGATACCTCTAATAGTAAATATGTTGTTAGACTTATTGACCATTTTAAGCATACAGGACCAAATGGACAGCATTCATGCATGGTCCTTGAATTTCTTGGTGACAGCTTATTGCGTCTCGTCAAATATAATCGTTATAAAGGCCTTGAGCTGGACAAAGTTAGGGAAATATGCAAGTGCATTCTAATTGGTCTAGATTATTTGCACAGGGAACTTGGAATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737262" ref_strand="+" ref_description="SGN-E737262 [LC09AC08]">
      <seq>aaatgaaaaccatgcatttgatcacaacacataaaactaccacggcgaatgcactctgttttttcactttaccccattcattctctctagcctccggcaccggcaagtcgccgtcggctgacattctaaaaccctttgagtttttagatcaaactttgctataaatgattcgataacgattgctttacccacagatctaattcagaaccgcaatcaatcgggggaagatatctcaattgactaatggctgcacagaatcagagtccgaatatggatcaatttgacgcctattttcggcgagctgatttggatcaggatggtcggatcagtggccctgaggccgttgcatttctcaaaggctcaaatttgccccaaccagtcctcgctcagatttggacatatgctgatcaaagtcgtactggctaccttagtcgccaagaattttacaatgctctcaagcttgttacggtagcacaaaaacgagagttgactccagaaatagtgaaggctgcactattcactccagcttcagccaaaattcctgctccccaaataaaccttgcagtcataccaggtcctcaaccaactaataaggttggttctacagttcctccagttggtggtgctactccaacagcaactcaaactttcggcgttaggggtccacaaggcttaccagctcagcaaagttatgtggggcctcctaggccctcaaatcctagccctggttttcaatctcaaccaaatgtttccggacaaggaatgctagttggaagtactattgcagcttctcgccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="111421" stop="115946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111721" g_stop="112109" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112110" i_stop="115237" i_length="3128">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115238" g_stop="115646" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="799" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E737262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111721" e_stop="112109"/>
          <exon e_start="115238" e_stop="115646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGAAAACCATGC-TTTGATCACAACACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAGGTTATTTGATTTCTGCATTTCTTTCTTTTTCCCTCTCTATTACCTGCAGGTTATTCCTTAGCGCCAATGAGAAGAAATAGTATCCATTTGCTTTTCGTCATGCTACTAAGTTTTCATTTTTCTACAAAACTGGTCCTGTTTCAATATTCGCTTAATTTTTGTACTGTTTACGTATCGATGTAGCATGAAGTTCATGTGATTGCAATGTACATCAATTCATTTTTCTTGCTCTATTTTTTTTGTAGTCCATTAGGTGTATTGGTTGGATTAGGAATTTGAGTTACGTGGGCTTAGTAGGAACTATGAAGATTTGGAATATTGAGTATCAGTTGATGTTCTAAACTTCAATCCCAAACTAGTGGTGTCAGCTGTATGAATTTTCTATGCCAATTCCGCTATGTTCGGGCACAATTCAGTCTCAGTTGAAATTTTTGTAAGGGAACTTAGAAATCATCCATAGTCTGTTTAATACTGTCTTCACTTAAACCAAGTGATGGATTCAATCTTAACCAGTAGCAGATTGCCCATGAATCTAGTTTTCCTCTCTATCTTTCAGAGAGGAACCTATTTGCTGTCCATTTCTCTCTTTACCATGTGTTTCTCCTTCCCGGTTGTTCCAGTAACTGCAAGTTTTGGTTCTATGGTCGTTGTTGGCAATGGTCATCATCACGAACACCTATACAGGAATTGAACAACCGGATTCAATCTTTTGAGATTTGTGCTTCAGATGTTGGTTCCCCATACATGATGTTGGATGCTTCGTTTTGTCGTTGCAATGCTAGCTGTTACTTTTTAAGATCATTTTAGCTGCAAATTTTGTTGCACTATTATAGTATATGTATTATGGGGTGGGTTGGGATGTCCCGTTATGGAATACATGGTTGTTTAGAAATAAGTAAGTTGGCAGTTAATATACTGAACCCCAGTTTTCAGGAGTTTCAGAATTAAAACATTATGAATGTGGGGTAATAGATACTGAAAAGTTTCCTGAAGTGGTGAGATGAAAATGTTTACATGAACTGACACAACCATATGCCCTAAGTTGCTCAGTCTCAGGTGCGGTTCTCCGATATCGGTGCACATTTGGAGGTCGGATCCTTCATGATCTAAATTTTAAAATTCGGGGGTATGAATCCAGGTAAGGATACGGAGCTGGATTCGATTAAAGATAATTCAAATATCTAAAATTAGAGTTATAAATGTGCGTAAATTTGGTGGACCATTTGGAAGGAAACAAATGCGCAAATTTTTTGGATCAAGTTTGAGTATTTTTTTTGGCAAGTAAACATTCTATTTACCAAGTAAGAGTTACAGATCATAAAAAATAGCAGCCTTGGACGATCAGCTGCAACACTTAAACGTCTAAATCCCTATATGGTATGCCTTTACTCAGGGATACATATTCAACTACTCTAGTCGTTTTTCTAGTCGCAGATACAAGGATCCTCGCCCATGAACATCCTGAATGATTTTCCTGATAATCTCTTTTGCATTCCATGTTTGTCCTTGGAACACTCAACAACTCCTCTCCTGCCACCCATGGTATACATTCCCAACAAGAGTCATATGATATATTTGAGCATTGATATTGTTACCTCTCATGTGTGCTATTGCCCAGTTCACCTCCTCCTGCCATTTCATACCGTGTTTCCTGATGCCCTGCCACACCAAGATTTTCATCCAAATAGCAGATTCGTAAGGGCACACAGAAACAGATGATCAATATTTCCCACAGCAGCTTGATCAATCAATGGACAAGTATTAGATTCAACACTTCCCCAATTTGCTAGCCCGGCTTTGGTAAGTAGTCTTCCAGAGCCAAAACAAGATATATTTCCTCTTTGGAGCTCCATAATTAGACCATACGAGCTTCCTCCAGTCCACATTATTTGATTCTCCTCTCATTTTCTTGTATGTTGAACTAATAGAATAAGACCTCATGCTCAATACTTCATCTTCTTGTATGCCAGCCTCTGTGAAGTATACTTGTGCCTTTTAGATCCTTTGCACCATCCAAGAGGCTTGTTTAGGCTGCGTCCCCCATTTATTGCACTGTTGCCCATAGTACGTGTGAATCCATACTACCCAGATTTTATCTTTTTTCTGGCAAACAGCCCATAAAAGATTGCACAATGCAGCTTATTCCATGTATAAACATCTAGGAAATCCAAACCCCCTGCTAATTTAGGATAACACGATATATCCCAAGCAATCAAAGTTTTTTTTTGAGACATCAACACTGCCGGTCCACAAAAATCTTCTACATAAGGACTCTATCACTTATATAATCTTTTTGGGAAGGGCAAAATTTGAGACCAATAGATTTGTATAGCAAGTAAGACACTCTTGATGAGTTGAGTCCTTCCAGTGTATTATAAGAATCTAGAGGACCAATTAGTGATCCTTCCTGGCATTTTATCAATGAGAGGTTTACATTGGACAACAGAGGGTCTTAGTACTGAGAGTTACCCCAAGATATCTGAAAGGTAGCTCTCCTTTAAGTAAATTAAGTTCAGCCTATATCTGAACCTGTATATCACCAGGTACTCCACCAAATATATGAAGATTTTGTTCATATTAGCTATCAATTTTGATTATTTGGAGAACTCCTGGAAGCAGGCAAATAATTGCATTATAGAGTCTTTATCACCCATACAGAAAAGTAGTAAATCATCGGCAAAACTAAGCTGCACAATTTTTTTTTCATTTGGGATGAAACTGGAATCCTACTTGACTTTGTACAGTCTTCATATGTTTAGTGAGATACTCCATAACAAGCACAAATAGGAAAGGAGATCGCTGATGTATTGAACCCAGGAACTAGTTAGTAAAATATATTGGAGCTACTTTTTGATGAAGAGGAAAAAGAGAAGAAAATAGTTTTATGGTTCAGCCTGTGCTTGATGAACCATGCCTTTATATTCCAGCAGGTGATGTATTAATTAGCTTTATAATAAATATGCTGCTTGCCAAAAGTCAGGTATAGATATGAAGTTCAACACAGTCAAGATGGGGAAGAAGTAGTTTATGTAGTCTCCGTGACTTCTGTTAGATAACTGGAGCTATCGATCTCCTATTATTTTCTTAATAGTTAATACTAAAATTCACATTTCTTTTCCATTATGTAGATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATACTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTC</genome_strand>
        <mrna_strand>AAATGAAAACCATGCATTTGATCACAACACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATGCTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTTCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735453" ref_strand="+" ref_description="SGN-E735453 [LC01CF03]">
      <seq>gaggtcattctaccacggcgaatgcactctgttttttcactttaccccattcattctctctagcctccggcaccggcaagtcgccgtcggctgacattctaaaaccctttgagtttttagatcaaactttgctataaatgattcgataacgattgctttacccacagatctaattcagaaccgcaatcaatcgggggaagatatctcaattgactaatggctgcacagaatcagagtccgaatatggatcaatttgacgcctattttcggcgagctgatttggatcaggatggtcggatcagtggccctgaggccgttgcatttctcaaaggctcaaatttgccccaaccagtcctcgctcagatttggacatatgctgatcaaagtcgtactggctaccttagtcgccaagaattttacaatgctctcaagcttgttacggtagcacaaaaacgagagttgactccagaaatagtgaaggctgcactattcactccagcttcagccaaaattcctgctccccaaataaaccttgcagtcataccaggtcctcaaccaactaataaggttggttctacagttcctccagttggtggtgctactccaacagcaactcaaactttcggcgttaggggtccacaaggcttaccagctcagcaaagttatgtgggggcctcctaggccctcaaatcctagccctggtttccaatctccaccaaatgtttccggacaaggaatgctagttggaagtactattgcagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="111451" stop="115939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111747" g_stop="112109" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112110" i_stop="115237" i_length="3128">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115238" g_stop="115639" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="766" r_length="403" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E735453" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111747" e_stop="112109"/>
          <exon e_start="115238" e_stop="115639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAGGTTATTTGATTTCTGCATTTCTTTCTTTTTCCCTCTCTATTACCTGCAGGTTATTCCTTAGCGCCAATGAGAAGAAATAGTATCCATTTGCTTTTCGTCATGCTACTAAGTTTTCATTTTTCTACAAAACTGGTCCTGTTTCAATATTCGCTTAATTTTTGTACTGTTTACGTATCGATGTAGCATGAAGTTCATGTGATTGCAATGTACATCAATTCATTTTTCTTGCTCTATTTTTTTTGTAGTCCATTAGGTGTATTGGTTGGATTAGGAATTTGAGTTACGTGGGCTTAGTAGGAACTATGAAGATTTGGAATATTGAGTATCAGTTGATGTTCTAAACTTCAATCCCAAACTAGTGGTGTCAGCTGTATGAATTTTCTATGCCAATTCCGCTATGTTCGGGCACAATTCAGTCTCAGTTGAAATTTTTGTAAGGGAACTTAGAAATCATCCATAGTCTGTTTAATACTGTCTTCACTTAAACCAAGTGATGGATTCAATCTTAACCAGTAGCAGATTGCCCATGAATCTAGTTTTCCTCTCTATCTTTCAGAGAGGAACCTATTTGCTGTCCATTTCTCTCTTTACCATGTGTTTCTCCTTCCCGGTTGTTCCAGTAACTGCAAGTTTTGGTTCTATGGTCGTTGTTGGCAATGGTCATCATCACGAACACCTATACAGGAATTGAACAACCGGATTCAATCTTTTGAGATTTGTGCTTCAGATGTTGGTTCCCCATACATGATGTTGGATGCTTCGTTTTGTCGTTGCAATGCTAGCTGTTACTTTTTAAGATCATTTTAGCTGCAAATTTTGTTGCACTATTATAGTATATGTATTATGGGGTGGGTTGGGATGTCCCGTTATGGAATACATGGTTGTTTAGAAATAAGTAAGTTGGCAGTTAATATACTGAACCCCAGTTTTCAGGAGTTTCAGAATTAAAACATTATGAATGTGGGGTAATAGATACTGAAAAGTTTCCTGAAGTGGTGAGATGAAAATGTTTACATGAACTGACACAACCATATGCCCTAAGTTGCTCAGTCTCAGGTGCGGTTCTCCGATATCGGTGCACATTTGGAGGTCGGATCCTTCATGATCTAAATTTTAAAATTCGGGGGTATGAATCCAGGTAAGGATACGGAGCTGGATTCGATTAAAGATAATTCAAATATCTAAAATTAGAGTTATAAATGTGCGTAAATTTGGTGGACCATTTGGAAGGAAACAAATGCGCAAATTTTTTGGATCAAGTTTGAGTATTTTTTTTGGCAAGTAAACATTCTATTTACCAAGTAAGAGTTACAGATCATAAAAAATAGCAGCCTTGGACGATCAGCTGCAACACTTAAACGTCTAAATCCCTATATGGTATGCCTTTACTCAGGGATACATATTCAACTACTCTAGTCGTTTTTCTAGTCGCAGATACAAGGATCCTCGCCCATGAACATCCTGAATGATTTTCCTGATAATCTCTTTTGCATTCCATGTTTGTCCTTGGAACACTCAACAACTCCTCTCCTGCCACCCATGGTATACATTCCCAACAAGAGTCATATGATATATTTGAGCATTGATATTGTTACCTCTCATGTGTGCTATTGCCCAGTTCACCTCCTCCTGCCATTTCATACCGTGTTTCCTGATGCCCTGCCACACCAAGATTTTCATCCAAATAGCAGATTCGTAAGGGCACACAGAAACAGATGATCAATATTTCCCACAGCAGCTTGATCAATCAATGGACAAGTATTAGATTCAACACTTCCCCAATTTGCTAGCCCGGCTTTGGTAAGTAGTCTTCCAGAGCCAAAACAAGATATATTTCCTCTTTGGAGCTCCATAATTAGACCATACGAGCTTCCTCCAGTCCACATTATTTGATTCTCCTCTCATTTTCTTGTATGTTGAACTAATAGAATAAGACCTCATGCTCAATACTTCATCTTCTTGTATGCCAGCCTCTGTGAAGTATACTTGTGCCTTTTAGATCCTTTGCACCATCCAAGAGGCTTGTTTAGGCTGCGTCCCCCATTTATTGCACTGTTGCCCATAGTACGTGTGAATCCATACTACCCAGATTTTATCTTTTTTCTGGCAAACAGCCCATAAAAGATTGCACAATGCAGCTTATTCCATGTATAAACATCTAGGAAATCCAAACCCCCTGCTAATTTAGGATAACACGATATATCCCAAGCAATCAAAGTTTTTTTTTGAGACATCAACACTGCCGGTCCACAAAAATCTTCTACATAAGGACTCTATCACTTATATAATCTTTTTGGGAAGGGCAAAATTTGAGACCAATAGATTTGTATAGCAAGTAAGACACTCTTGATGAGTTGAGTCCTTCCAGTGTATTATAAGAATCTAGAGGACCAATTAGTGATCCTTCCTGGCATTTTATCAATGAGAGGTTTACATTGGACAACAGAGGGTCTTAGTACTGAGAGTTACCCCAAGATATCTGAAAGGTAGCTCTCCTTTAAGTAAATTAAGTTCAGCCTATATCTGAACCTGTATATCACCAGGTACTCCACCAAATATATGAAGATTTTGTTCATATTAGCTATCAATTTTGATTATTTGGAGAACTCCTGGAAGCAGGCAAATAATTGCATTATAGAGTCTTTATCACCCATACAGAAAAGTAGTAAATCATCGGCAAAACTAAGCTGCACAATTTTTTTTTCATTTGGGATGAAACTGGAATCCTACTTGACTTTGTACAGTCTTCATATGTTTAGTGAGATACTCCATAACAAGCACAAATAGGAAAGGAGATCGCTGATGTATTGAACCCAGGAACTAGTTAGTAAAATATATTGGAGCTACTTTTTGATGAAGAGGAAAAAGAGAAGAAAATAGTTTTATGGTTCAGCCTGTGCTTGATGAACCATGCCTTTATATTCCAGCAGGTGATGTATTAATTAGCTTTATAATAAATATGCTGCTTGCCAAAAGTCAGGTATAGATATGAAGTTCAACACAGTCAAGATGGGGAAGAAGTAGTTTATGTAGTCTCCGTGACTTCTGTTAGATAACTGGAGCTATCGATCTCCTATTATTTTCTTAATAGTTAATACTAAAATTCACATTTCTTTTCCATTATGTAGATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATACTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGT-GGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCT</genome_strand>
        <mrna_strand>GAGGTCATTCTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATGCTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCCACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306534" ref_strand="+" ref_description="SGN-E306534 [cLEX-13-J13]">
      <seq>gtcctcaaccaactaataaagttggttctacagttcctccagttggtggtgctactccaacagcaactcaaactttcggcgttaggggtccacaaagcttaccagctcagcaaagttatgtggggcctcctaagccctcaaatcctagccctggtttccaatctcaaccaaatgtttccggacaaggaatgctacttggaagtactattgcagcttctcgccctcccagttccactgatttgtttgctggtcagaatggtcgctcacaatcaggtgccaattcccaagctcctaattcaagtggcagttctagaagtcaagatgcatttggtctggctgtatcaacaccttctgcacaacaaacacaacaagcaaccatgtcatcagtgcaaccaaatctatcaaaatcaaataatgcaactttgtcgcatggcaacctgcttgaagccaagatgcctaaagctgtttcagttgcaggaaatggatttccatccgattcactctttggagatgttttttcagttgcctcagttcaaccaaatcaaagctccacaccaactatatcttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="115122" stop="116293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115422" g_stop="115993" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E306534" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115422" e_stop="115993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTCCCAGTTCCACTGATTTGTTTGCTGGTCAGAATGGTCGCTCACAATCAGGTGCCAATTCCCAAGCTCCTAATTCAAGTGGCAGTTCTAGAAGTCAGGATGCATTTGGTCTGGCTGTATCAACACCTTCTGCACAACAAACACAACAAGCAACCATGTCATCAGTGCAACCAAATCTATCAAAATCAAATAATGCAACTTTGTCGCATGGCAACCTGCTTGAAGCCAAGATGCCTAAAGCTGTTTCAGTTGCAGGAAATGGATTTCCATCCGATTCACTCTTTGGAGATGTTTTTTCAGTTGCCTCAGTTCAACCAAATCAAAGCTCCACACCAACTATATCTTCAGCT</genome_strand>
        <mrna_strand>GTCCTCAACCAACTAATAAAGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAAGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAAGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTACTTGGAAGTACTATTGCAGCTTCTCGCCCTCCCAGTTCCACTGATTTGTTTGCTGGTCAGAATGGTCGCTCACAATCAGGTGCCAATTCCCAAGCTCCTAATTCAAGTGGCAGTTCTAGAAGTCAAGATGCATTTGGTCTGGCTGTATCAACACCTTCTGCACAACAAACACAACAAGCAACCATGTCATCAGTGCAACCAAATCTATCAAAATCAAATAATGCAACTTTGTCGCATGGCAACCTGCTTGAAGCCAAGATGCCTAAAGCTGTTTCAGTTGCAGGAAATGGATTTCCATCCGATTCACTCTTTGGAGATGTTTTTTCAGTTGCCTCAGTTCAACCAAATCAAAGCTCCACACCAACTATATCTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207663" ref_strand="+" ref_description="SGN-E207663 [cLEC-32-N21]">
      <seq>gagtgtcgacaatcttgctaggcattgtccatcgtatgcctctgaaattaatcaaaatcttccatagttggccagtgattctccaatgcaaaatcaaacagtgcgggactaagataatgttcctctttcttaggttttcatgtatcaagacagcttcttttgctagaagccatgagaaacatgccaccttcaaaggtgctttggtctccatatttgtttccatggccatatgtagttctgtgccactgtcgagttcagaagtttgtaccctgaacttactttgtatgcccttttgttttcccgattccaccatagtctgtccaccccattcttcagtccttgaaaagcttcaaggattttgaagaactcaatcagtctaggaattttccaatcattcaagtttcttgtaaaatttaattcccagccttggagcgctcacatgtcagctattgttctgtcctgacagataactaaatcaaacagatcagggaacttctctgcaagattccaattacctaaccacctatctttccacaagatggttttattaccatcacgacatcacctacactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="116948" stop="118139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117248" g_stop="117341" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117342" i_stop="117377" i_length="36">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117378" g_stop="117839" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="557" r_length="461" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E207663" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117248" e_stop="117341"/>
          <exon e_start="117378" e_stop="117839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTCAACAATCTTGCTAGGCATTGTCCATTGTATGCCTCTG--AGTAATGAAAATATTCCATAGTTGGTCAGTGATTCTACAATGCAAAAACAAATGAACCACTGTCTCAGCTGCCTCACCACATAAACAACAGTGTGTGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTGTCAAGACAGCTTCTTTTGCTAGCATCCATGAGAAACATGCCACCTCCAAAGGTGCTTTGGTTCTCCAAATTTGTTTCCATGGCCATATGGAGTTCTGTGCCACTGTAGAGTTGAGAAGTTTGTACCCTGAACTTACTTTGTATACCCCTTTGTTGTGCCCATTCCACCATAGTCTGTCCACCCTATTCTTCAGACCTTGAAAAGCTTCAAGGATTTTGAAGAACTCGATCAGTTTAGGAATTTCCCAATCATTCAAGTTTCTTCTAAAATTTAAGTCCCAGCCTTGGAACGCCCACATGTCAGCTATTGTTCTGTCCTGATGGATAGCTAAATCAAACGGATCAGGTAACTTCTCTGCAAGACTCCAATTACCTAACCACCTATCTTTCCAGAAGATGGTTTTGTTACCATCAC</genome_strand>
        <mrna_strand>GAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCA....................................AACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGG-TCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271031" ref_strand="+" ref_description="SGN-E271031 [cLEM-22-B22]">
      <seq>aggggctagtgaaaagtttgaatgaacgctgcaagacttatgggctgcgggccaaaccaactactctgcttgagcttccatttggttggcaacctggcatccaagagggggcagcagactgggatggagagtgggataaatttgatgatgaagaattcacatttgtgaaagagctcaatcttgacgtacaaaatgtcattgcccctcctaaaccaaaatcttcactggttcgggagaaagcatcttctttgaatgaccatgatactggaaaatcatctgctgatgctggcactgatgcaaagtcagagaagttgccaagcgctggtaaaaccagagtgatgagtgatgtggagactacccatacagcaagaagttcaactaatagtccaaccaggagtaatgcagttgagagtccaacaaaggaattcgaagaatcactgaataggaaggacggtacttttgatggttctccccatgctgcccaaagtgaacactggggagctgaatctgcgttctctggggacaaaagttttgatgaatctggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="129907" stop="132177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130207" g_stop="130290" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130291" i_stop="130957" i_length="667">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130958" g_stop="131026" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="153" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131027" i_stop="131317" i_length="291">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131318" g_stop="131651" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="487" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131652" i_stop="131815" i_length="164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131816" g_stop="131877" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="549" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E271031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130207" e_stop="130290"/>
          <exon e_start="130958" e_stop="131026"/>
          <exon e_start="131318" e_stop="131651"/>
          <exon e_start="131816" e_stop="131877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCTAGTGAAAACTTTGAATGAACGCTGCAAGACTTATGGGCTACGGGCCAAACCAACTACTCTGCTTGAGCTTCCATTTGGTACTGGCGCTTGTATTTTTGTTGTTTTGCAATTATATGTGCTTTTATTGTTATTTGTCTGTACTTTATCCTTGATATCATAAAATCCAGATCAAAAGCATTGGTGTATATTTATTTCTAGCATTTCCTGTTATTTTTGGTTCTGAGTTGACCCCATATGAGTCATTGTTATTACCGACAATTTTTTTGTTCTACTGGGCTGTTTTTTCTCTCTTTAAAGTGTCATTTATGTTTGTTAATGTTGGCCTTTCTTTTGGCATCTGAGTTCAGTGTAGTACTTAAGTAGAGTTATCTTGCTGGCTGCATTAGCATCTGTTCCAGTTCTGTAGTTTTCTAATCTTGTTGTTATATAGATAAAATAGCACCAATTGATCATATGAGGATGTAATCTGTGGCACGTATACTAAAGAGGAGTATATGCGTATTATAATTTTTCTAATGAGAGTTGCGACCTATTCCTTTATATTTATATCTTGTGTATCTGGATCATGAGTTGGGACTAATTCTGATGTTCAAGAGATGTGTGTAATCATCTAATGGTCAGGACGTCGGTGAAAAAAAGGGGATAGCATGCCATTTTGATGACTCTTGTATTTCTTACCTGAGCTCTTTGGTTTGTAATTGCTTTACTTTTTTGATGTTTCTGACATTAGTAATAATTTCAAAGGTTGGCAACCTGGCATCCAAGAGGGGGCAGCAGACTGGGATGGAGAGTGGGATAAATTTGATGATGAAGGTATGTTGTAAGATATATATTTAATAAAAGACGGATATCTCCCTGAAAAGAAGGTGATCCAGCCCCACCTTCCAGTACAGCTACTTTGTTACGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGAATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAGGTAATGTGGTTGTTTTCGTCCTTTTTTGGTGTTAATCTACAGTGGTGTTATGCCTTTAAATAATGAAAGATATTTTCTGTTATTCAATTGTATTCTTTGATGAATTCAGTTTCTCTCAAGTGTTAAAGTTTCTAGAAATCTGAACTTCTGTATTACTAGTGCAGTGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGG</genome_strand>
        <mrna_strand>AGGGGCTAGTGAAAAGTTTGAATGAACGCTGCAAGACTTATGGGCTGCGGGCCAAACCAACTACTCTGCTTGAGCTTCCATTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAACCTGGCATCCAAGAGGGGGCAGCAGACTGGGATGGAGAGTGGGATAAATTTGATGATGAAG...................................................................................................................................................................................................................................................................................................AATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAG....................................................................................................................................................................TGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578223" ref_strand="-" ref_description="SGN-E578223 [LE12AH03]">
      <seq>cgatcaaagttcctccagagaccacctgatcacttctgtcatttttagataaaaaaacttaaccttcatggtgtcttcagagatgagtagatgaccgaatcaactttttctcctccctaaactttgagcaattctattattaacttttttcaagtttttaataaattttaactcattgcattgttgaataatctccgcagaattcacatttgtgaaagagctcaatcttgacgtacaaaatgtcattgcccctcctaaaccaaaatcttcactggttcgggagaaagcatcttctttgaatgaccatgatactggaaaatcatctgctgatgctggcactgatgcaaagtcagagaagttgccaagccctgtaaaaaccagagtgatgagtgatgtggagactacccatacagcaagaagttcaactaatagtccaaccaggagtaatgcagttgagagtccaacaaaggaatttgaagaatcactgaataggaaggacggtacttttgatggttctccccatgctgcccaaagtgaacactggggagctgaatctgcgttctctggggacaaaagttttgatgaatctggttggggtacatttgatacagaccttgatgcagatgctgcatggaatatcaattctgctgctaaggtaaatggatacatcttcattttagttaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0332B10-uFkrv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0332B10.1" temp_strand="+" temp_description="C02HBa0332B10.1  CU459018.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0332B10 sequenced_by:sanger upload_account_name:uk">
        <position start="130818" stop="132283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131118" g_stop="131651" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131652" i_stop="131815" i_length="164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131816" g_stop="131984" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="703" r_length="169" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0332B10.1" gen_strand="+" ref_id="SGN-E578223" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0332B10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578223" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131118" e_stop="131651"/>
          <exon e_start="131816" e_stop="131984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGAATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAGGTAATGTGGTTGTTTTCGTCCTTTTTTGGTGTTAATCTACAGTGGTGTTATGCCTTTAAATAATGAAAGATATTTTCTGTTATTCAATTGTATTCTTTGATGAATTCAGTTTCTCTCAAGTGTTAAAGTTTCTAGAAATCTGAACTTCTGTATTACTAGTGCAGTGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGGGTACATTTGATACAGACCTTGATGCAGATGCTGCATGGAATATCAATTCTGCTGCTAAGGTAAATGGATACATCTTCATTTTAGTTACCAAAAAAAAAAAAAGGAAG</genome_strand>
        <mrna_strand>CGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGCATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCCCTGTAAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTTGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAG....................................................................................................................................................................TGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGGGTACATTTGATACAGACCTTGATGCAGATGCTGCATGGAATATCAATTCTGCTGCTAAGGTAAATGGATACATCTTCATTTTAGTTACCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="21405" PGL_stop="17465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21405" e_stop="21350"/>
            <exon e_start="20591" e_stop="20517"/>
            <exon e_start="20365" e_stop="20305"/>
            <exon e_start="19524" e_stop="19438"/>
            <exon e_start="19128" e_stop="19030"/>
            <exon e_start="18938" e_stop="18833"/>
            <exon e_start="18741" e_stop="18665"/>
            <exon e_start="18493" e_stop="18386"/>
            <exon e_start="17832" e_stop="17746"/>
            <exon e_start="17623" e_stop="17465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.895" e_score="0.911"/>
          <exon-intron don_prob="1.000" acc_prob="0.942" e_score="0.947"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.951"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.875" acc_prob="0.996" e_score="0.909"/>
          <exon-intron don_prob="0.965" acc_prob="0.992" e_score="0.962"/>
          <exon-intron don_prob="0.998" acc_prob="0.724" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.972"/>
          <exon-intron don_prob="0.934" acc_prob="0.964" e_score="0.977"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="21405" e_stop="21350" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.895">
            <gDNA_intron_boundary i_start="21349" i_stop="20592" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="20591" e_stop="20517" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="20516" i_stop="20366" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="20365" e_stop="20305" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20304" i_stop="19525" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="19524" e_stop="19438" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19437" i_stop="19129" i_length="309"/>
          </intron>
          <exon e_serial="5" e_score="0.909">
            <gDNA_exon_boundary e_start="19128" e_stop="19030" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.875" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19029" i_stop="18939" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="18938" e_stop="18833" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.992">
            <gDNA_intron_boundary i_start="18832" i_stop="18742" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="18741" e_stop="18665" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.724">
            <gDNA_intron_boundary i_start="18664" i_stop="18494" i_length="171"/>
          </intron>
          <exon e_serial="8" e_score="0.972">
            <gDNA_exon_boundary e_start="18493" e_stop="18386" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="18385" i_stop="17833" i_length="553"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="17832" e_stop="17746" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.934" acc_prob="0.964">
            <gDNA_intron_boundary i_start="17745" i_stop="17624" i_length="122"/>
          </intron>
          <exon e_serial="10" e_score="0.887">
            <gDNA_exon_boundary e_start="17623" e_stop="17465" e_length="159"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21405" stop="21350"/>
              <exon start="20591" stop="20517"/>
              <exon start="20365" stop="20305"/>
              <exon start="19524" stop="19438"/>
              <exon start="19128" stop="19030"/>
              <exon start="18938" stop="18833"/>
              <exon start="18741" stop="18665"/>
              <exon start="18493" stop="18386"/>
              <exon start="17832" stop="17746"/>
              <exon start="17623" stop="17465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATCTTCTAAGTCCTCTTCCATTCAAGAAAAAACAATTATCAATGGCTTCTTC : GAGTGTACAAGACCTTCTACCACCATCTCTGGATTCTACTTCCCAACCCCCATCACTCTTTGATGGAACTACCAG : GTTGTATATCAATTATCAATGCCCCTATTCACAACGTGTGTGGATTACAAGAAATGTTAAG : GGTTTGCAAGACATGATCAAGTTAGTTCCAATTGATCTTCAGAACAGGCCTGATTGGTACAAGGAAAAAGTTTACCCCAAAAATAAG : GTGCCTTCCCTAGAGCACAACAACAAGGTGATCGGAGAGAGTTTTGTTCTGGTTAAATATGTTGACTATAACTTTGAAGGACCATCATTCATGCCAGAT : GACCAGGAAAAGCAAAAATTTGCTGAAGAATTGATAGCTTATAGTGACACTACATTCGTCCCAGAAGTATATAGATCTTTCGCAAAAGATGCACGGAAACTGGCTG : GTGCACAATTTGATTACCTAGAAAAAGCTCTCCACAAATTCGACGATGGGCCTTTCTTCCTTGGTCAATTCAGTCAG : GTTGACATAATATATGCTCCATTTATCGAAAGGTTCCATGTTTTTATGCCAGAGGGGTTTAACTATGACATCACAACCGGGAGGCCTAAACTAGCCAAGTGGATTGAG : GAAATGAACAATCTTGACGGATACAAGCAAACAAAAGTCTTGGAACAAGAGAAAATGGTTGAGTACTACAAGAATCGCTTTCTGCCG : AAAGCTTGAAACTTCAAAAATGCATTGTCAATCTCAGATGAAAGTTACAGGAACTAGGACTTTGGTATGAAATATGCTATGGAGTTCTATAGTAATATGAACCAGCAATAATTTGCTCTATGTTTTTTTATCGTTAGTGTTTGGAATTGTATTTTCCTT</gDNA_template>
            <first_frame> Q  N  L  L  S  P  L  P  F  K  K  K  Q  L  S  M  A  S  S :   S  V  Q  D  L  L  P  P  S  L  D  S  T  S  Q  P  P  S  L  F  D  G  T  T  R :   L  Y  I  N  Y  Q  C  P  Y  S  Q  R  V  W  I  T  R  N  V  K  :  G  L  Q  D  M  I  K  L  V  P  I  D  L  Q  N  R  P  D  W  Y  K  E  K  V  Y  P  K  N  K  :  V  P  S  L  E  H  N  N  K  V  I  G  E  S  F  V  L  V  K  Y  V  D  Y  N  F  E  G  P  S  F  M  P  D  :  D  Q  E  K  Q  K  F  A  E  E  L  I  A  Y  S  D  T  T  F  V  P  E  V  Y  R  S  F  A  K  D  A  R  K  L  A   : G  A  Q  F  D  Y  L  E  K  A  L  H  K  F  D  D  G  P  F  F  L  G  Q  F  S  Q  :  V  D  I  I  Y  A  P  F  I  E  R  F  H  V  F  M  P  E  G  F  N  Y  D  I  T  T  G  R  P  K  L  A  K  W  I  E  :  E  M  N  N  L  D  G  Y  K  Q  T  K  V  L  E  Q  E  K  M  V  E  Y  Y  K  N  R  F  L  P  :  K  A  *  N  F  K  N  A  L  S  I  S  D  E  S  Y  R  N  *  D  F  G  M  K  Y  A  M  E  F  Y  S  N  M  N  Q  Q  *  F  A  L  C  F  F  I  V  S  V  W  N  C  I  F  L </first_frame>
            <second_frame>  R  I  F  *  V  L  F  H  S  R  K  N  N  Y  Q  W  L  L   : R  V  Y  K  T  F  Y  H  H  L  W  I  L  L  P  N  P  H  H  S  L  M  E  L  P   : G  C  I  S  I  I  N  A  P  I  H  N  V  C  G  L  Q  E  M  L  R :   V  C  K  T  *  S  S  *  F  Q  L  I  F  R  T  G  L  I  G  T  R  K  K  F  T  P  K  I  R :   C  L  P  *  S  T  T  T  R  *  S  E  R  V  L  F  W  L  N  M  L  T  I  T  L  K  D  H  H  S  C  Q  M :   T  R  K  S  K  N  L  L  K  N  *  *  L  I  V  T  L  H  S  S  Q  K  Y  I  D  L  S  Q  K  M  H  G  N  W  L  :  V  H  N  L  I  T  *  K  K  L  S  T  N  S  T  M  G  L  S  S  L  V  N  S  V  R :   L  T  *  Y  M  L  H  L  S  K  G  S  M  F  L  C  Q  R  G  L  T  M  T  S  Q  P  G  G  L  N  *  P  S  G  L  R :   K  *  T  I  L  T  D  T  S  K  Q  K  S  W  N  K  R  K  W  L  S  T  T  R  I  A  F  C  R :   K  L  E  T  S  K  M  H  C  Q  S  Q  M  K  V  T  G  T  R  T  L  V  *  N  M  L  W  S  S  I  V  I  *  T  S  N  N  L  L  Y  V  F  L  S  L  V  F  G  I  V  F  S   </second_frame>
            <third_frame>   E  S  S  K  S  S  S  I  Q  E  K  T  I  I  N  G  F  F  :  E  C  T  R  P  S  T  T  I  S  G  F  Y  F  P  T  P  I  T  L  *  W  N  Y  Q  :  V  V  Y  Q  L  S  M  P  L  F  T  T  C  V  D  Y  K  K  C  *   : G  F  A  R  H  D  Q  V  S  S  N  *  S  S  E  Q  A  *  L  V  Q  G  K  S  L  P  Q  K  *   : G  A  F  P  R  A  Q  Q  Q  G  D  R  R  E  F  C  S  G  *  I  C  *  L  *  L  *  R  T  I  I  H  A  R   : *  P  G  K  A  K  I  C  *  R  I  D  S  L  *  *  H  Y  I  R  P  R  S  I  *  I  F  R  K  R  C  T  E  T  G  W :   C  T  I  *  L  P  R  K  S  S  P  Q  I  R  R  W  A  F  L  P  W  S  I  Q  S   : G  *  H  N  I  C  S  I  Y  R  K  V  P  C  F  Y  A  R  G  V  *  L  *  H  H  N  R  E  A  *  T  S  Q  V  D  *   : G  N  E  Q  S  *  R  I  Q  A  N  K  S  L  G  T  R  E  N  G  *  V  L  Q  E  S  L  S  A   : E  S  L  K  L  Q  K  C  I  V  N  L  R  *  K  L  Q  E  L  G  L  W  Y  E  I  C  Y  G  V  L  *  *  Y  E  P  A  I  I  C  S  M  F  F  Y  R  *  C  L  E  L  Y  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21405" stop="21350"/>
                    <exon start="20591" stop="20517"/>
                    <exon start="20365" stop="20305"/>
                    <exon start="19524" stop="19438"/>
                    <exon start="19128" stop="19030"/>
                    <exon start="18938" stop="18833"/>
                    <exon start="18741" stop="18665"/>
                    <exon start="18493" stop="18386"/>
                    <exon start="17832" stop="17746"/>
                    <exon start="17623" stop="17615"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNLLSPLPFKKKQLSMASSSVQDLLPPSLDSTSQPPSLFDGTTRLYINYQCPYSQRVWITRNVKGLQDMIKLVPIDLQNRPDWYKEKVYPKNKVPSLEHNNKVIGESFVLVKYVDYNFEGPSFMPDDQEKQKFAEELIAYSDTTFVPEVYRSFAKDARKLAGAQFDYLEKALHKFDDGPFFLGQFSQVDIIYAPFIERFHVFMPEGFNYDITTGRPKLAKWIEEMNNLDGYKQTKVLEQEKMVEYYKNRFLPKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="40412" PGL_stop="40967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40412" e_stop="40967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="40412" e_stop="40967" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40412" stop="40967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTTGCCCTTATTTTCACTACTTTAAGTTCGCTATACAACTCTTAGGATCACGATAGGACTTTCTTAGCTTGTAACATAGGCTCAGAGTCAGGTATGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTCCTTGACATATCGGCTAAACATACCATTTTCTATCATTTTATTTCCCCAATTTCTCATATTCTTTCACCTTGCTATTTTCCCTTCTTTCTTCATTTGTGTAAGTGATTCTCTTCTTTTCTTGCTTGTATTTCTTTTGTATGTGTCTATATATATATATATATATATATATATATATATATATATATTACATTTCTTTCAACTAATTCTTGAGTCACTTTACTTTTGTTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCCAGAGCATTCCTCATAATAGCCACCCTCAACTCATGGTTTTGCCATGAGTCAAAGTACACAATACCCAAAGTTGGGTCAGGGCCATAAAAAAGGGTTGTTTACTCCATTAGCCACCCTCAACTTATGCTTTTGGCATAAGCTGAGGTGCACATATCCAA</gDNA_template>
            <first_frame> *  S  C  P  Y  F  H  Y  F  K  F  A  I  Q  L  L  G  S  R  *  D  F  L  S  L  *  H  R  L  R  V  R  Y  G  I  F  R  Y  T  L  V  T  F  C  P  P  *  H  I  G  *  T  Y  H  F  L  S  F  Y  F  P  N  F  S  Y  S  F  T  L  L  F  S  L  L  S  S  F  V  *  V  I  L  F  F  S  C  L  Y  F  F  C  M  C  L  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  Y  I  S  F  N  *  F  L  S  H  F  T  F  V  L  S  L  S  L  F  F  Q  P  H  F  P  E  H  S  S  *  *  P  P  S  T  H  G  F  A  M  S  Q  S  T  Q  Y  P  K  L  G  Q  G  H  K  K  G  L  F  T  P  L  A  T  L  N  L  C  F  W  H  K  L  R  C  T  Y  P  </first_frame>
            <second_frame>  D  L  A  L  I  F  T  T  L  S  S  L  Y  N  S  *  D  H  D  R  T  F  L  A  C  N  I  G  S  E  S  G  M  V  Y  L  G  I  L  *  *  L  F  A  L  L  D  I  S  A  K  H  T  I  F  Y  H  F  I  S  P  I  S  H  I  L  S  P  C  Y  F  P  F  F  L  H  L  C  K  *  F  S  S  F  L  A  C  I  S  F  V  C  V  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  T  F  L  S  T  N  S  *  V  T  L  L  L  F  F  L  S  L  C  S  F  N  P  T  F  Q  S  I  P  H  N  S  H  P  Q  L  M  V  L  P  *  V  K  V  H  N  T  Q  S  W  V  R  A  I  K  K  G  C  L  L  H  *  P  P  S  T  Y  A  F  G  I  S  *  G  A  H  I  Q </second_frame>
            <third_frame>   I  L  P  L  F  S  L  L  *  V  R  Y  T  T  L  R  I  T  I  G  L  S  *  L  V  T  *  A  Q  S  Q  V  W  Y  I  *  V  Y  F  S  D  F  L  P  S  L  T  Y  R  L  N  I  P  F  S  I  I  L  F  P  Q  F  L  I  F  F  H  L  A  I  F  P  S  F  F  I  C  V  S  D  S  L  L  F  L  L  V  F  L  L  Y  V  S  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  L  H  F  F  Q  L  I  L  E  S  L  Y  F  C  S  F  S  L  F  V  L  S  T  P  L  S  R  A  F  L  I  I  A  T  L  N  S  W  F  C  H  E  S  K  Y  T  I  P  K  V  G  S  G  P  *  K  R  V  V  Y  S  I  S  H  P  Q  L  M  L  L  A  *  A  E  V  H  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40522" stop="40896"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYFSDFLPSLTYRLNIPFSIILFPQFLIFFHLAIFPSFFICVSDSLLFLLVFLLYVSIYIYIYIYIYIYILHFFQLILESLYFCSFSLFVLSTPLSRAFLIIATLNSWFCHESKYTIPKVGSGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="75012" PGL_stop="69535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75012" e_stop="74682"/>
            <exon e_start="74310" e_stop="73982"/>
            <exon e_start="72477" e_stop="72342"/>
            <exon e_start="72258" e_stop="72116"/>
            <exon e_start="70942" e_stop="70819"/>
            <exon e_start="70225" e_stop="69535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.855" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="75012" e_stop="74682" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74681" i_stop="74311" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74310" e_stop="73982" e_length="329"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73981" i_stop="72478" i_length="1504"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72477" e_stop="72342" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72341" i_stop="72259" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72258" e_stop="72116" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.975">
            <gDNA_intron_boundary i_start="72115" i_stop="70943" i_length="1173"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70942" e_stop="70819" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.855">
            <gDNA_intron_boundary i_start="70818" i_stop="70226" i_length="593"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="70225" e_stop="69535" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75012" stop="74682"/>
              <exon start="74310" stop="74115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74966" stop="74682"/>
              <exon start="74310" stop="74039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74843" stop="74682"/>
              <exon start="74310" stop="73982"/>
              <exon start="72477" stop="72342"/>
              <exon start="72258" stop="72116"/>
              <exon start="70942" stop="70923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72240" stop="72116"/>
              <exon start="70942" stop="70819"/>
              <exon start="70225" stop="69937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72196" stop="72116"/>
              <exon start="70942" stop="70819"/>
              <exon start="70225" stop="70036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70942" stop="70819"/>
              <exon start="70225" stop="69599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70026" stop="69609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCAACTATCAGCTAAATTAGGAAACCACACTGTAAAATCCCAGCAATTTACAGTTGAAAATTTTGGCGCATTATATCTTATAATATAATATGAAGGAATCAACAACAATATTAGTAGCTTTTCCCTAAATTCCACCGCTTTTTGTCAAAAGTTTCAACTTTGCTCTAAAAATCAAGATTTCTCCTTTTGAATGATGGTAGCAATTTAGTATTGAGCTGAGAATAAGAAGAAAGTGTAAAAATTGATGGGGAATTGTTTTGGATCAGAGAATCTTGATCCTAATCCTAGTAACAAAAGCAACTCATCAACTAGACCTTCTACCCCAG : ATACATCAAAGAACTACAGTGGTGGTGTTGGATTTTCGACTAGTAGTAGTACTGGGCGTAGCCGTTTTTCAGCAGCTGCAAGCGAGGATTCATGTTCGAATGGAGAAATATTGCCTACTCCAAATTTGAAGACTTACAGTTTTTCTGATCTGAAGGCTGCCACAAGAAATTTCAAGTCTGATACAGTTTTGGGGGTGGGAGGCTTTGGGACTGTATTTAAAGGATGGGTCGATGAGAAGACGCTTACTCCAACTAAAGTTGGAACTGGGATGGTTGTTGCCATCAAGAAGTTGAACTCAGAGAGCATGCAGGGATTTGAAGAGTGGCAG : GCAGAAGTTAACTTCTTAGGAAGGCTTTCACACCCAAACCTTGTTAAATTGTTGGGATATTGTTGGGAAGACAAGGAACTGTTACTTGTATATGAATTCATGCCAAAGGGAAGCTTGGAGAACCATCTTTTCAGAA : GGAGCACAGCTATTGAACCACTTTCTTGGGAGTTGCGGCTCAAAATTGCCATAGGAGCGGCACGAGGTTTAGCTTTTCTACATTCTTCAGAAAAGCAGATCATTTACAGAGATTTCAAGGCCTCCAATATACTTCTCGATGGG : AGTTACCATGCAAAGTTATCCGATTTTGGCTTAGCTAAAGTTGGGCCTTCAGCTGGGAACTCACATGTGACTACTCGTATCATGGGAACATATGGTTATGCTGCTCCTGAATACATTGCAACAG : GTCATCTGTATGTAAAAAGTGATGTATATGGATTTGGTGTTGTCTTGCTTGAGCTGTTAACAGGCTTACGAGCACTTGACACAAAACGACCTGGCGGACAGCATAATTTGGTGGACTGGATGAAACCGATGCTTTCTAACAAAAGGAAGCTGAAGTCCATTATGGACGCCCGAATGGAAGGCCAATATAGTTCAAAGGCAGCAATACTTACTGCTCAGCTTACTATAAAATGCCTAGAAGGAGAACCTAAGAAGAGGCCTTCTATGAAAGAAGTAGTGGAAGTATTGGAACAAGTTGAATTGATAAAGGAGAAATCAAAACCTTCCAAAAGCAAATCCGAGTCTTCATCTCATCGATACAAGCAGTCACCGAGAAGTTATCCTTCTCCACGTGGTGCAAGCAACCATGGATCCGGAGCCGGATCTGGAAGATGACAGGTACAACTGGAAAGGCAAACGCGAGCTGCTGAAAAATGAGTTTGTTTATACATTTAATTGTATTGAATTTGTTGTAGTCCAATTTGGTTTAATCATTGTTTTGGATTACAAATTTTGTAAAATTGTCTGTCACATCTGTACTCCATGGGAATAAATGTATTTCTATCGTTTATAAGAAAACTGATTTCATTTGTGGAAGGTATGATTACAGCTAAGATTAACAGGCAGTCCAGCCTGTTGAAATGTAAATTTGT</gDNA_template>
            <first_frame> K  L  Q  L  S  A  K  L  G  N  H  T  V  K  S  Q  Q  F  T  V  E  N  F  G  A  L  Y  L  I  I  *  Y  E  G  I  N  N  N  I  S  S  F  S  L  N  S  T  A  F  C  Q  K  F  Q  L  C  S  K  N  Q  D  F  S  F  *  M  M  V  A  I  *  Y  *  A  E  N  K  K  K  V  *  K  L  M  G  N  C  F  G  S  E  N  L  D  P  N  P  S  N  K  S  N  S  S  T  R  P  S  T  P   : D  T  S  K  N  Y  S  G  G  V  G  F  S  T  S  S  S  T  G  R  S  R  F  S  A  A  A  S  E  D  S  C  S  N  G  E  I  L  P  T  P  N  L  K  T  Y  S  F  S  D  L  K  A  A  T  R  N  F  K  S  D  T  V  L  G  V  G  G  F  G  T  V  F  K  G  W  V  D  E  K  T  L  T  P  T  K  V  G  T  G  M  V  V  A  I  K  K  L  N  S  E  S  M  Q  G  F  E  E  W  Q  :  A  E  V  N  F  L  G  R  L  S  H  P  N  L  V  K  L  L  G  Y  C  W  E  D  K  E  L  L  L  V  Y  E  F  M  P  K  G  S  L  E  N  H  L  F  R   : R  S  T  A  I  E  P  L  S  W  E  L  R  L  K  I  A  I  G  A  A  R  G  L  A  F  L  H  S  S  E  K  Q  I  I  Y  R  D  F  K  A  S  N  I  L  L  D  G  :  S  Y  H  A  K  L  S  D  F  G  L  A  K  V  G  P  S  A  G  N  S  H  V  T  T  R  I  M  G  T  Y  G  Y  A  A  P  E  Y  I  A  T   : G  H  L  Y  V  K  S  D  V  Y  G  F  G  V  V  L  L  E  L  L  T  G  L  R  A  L  D  T  K  R  P  G  G  Q  H  N  L  V  D  W  M  K  P  M  L  S  N  K  R  K  L  K  S  I  M  D  A  R  M  E  G  Q  Y  S  S  K  A  A  I  L  T  A  Q  L  T  I  K  C  L  E  G  E  P  K  K  R  P  S  M  K  E  V  V  E  V  L  E  Q  V  E  L  I  K  E  K  S  K  P  S  K  S  K  S  E  S  S  S  H  R  Y  K  Q  S  P  R  S  Y  P  S  P  R  G  A  S  N  H  G  S  G  A  G  S  G  R  *  Q  V  Q  L  E  R  Q  T  R  A  A  E  K  *  V  C  L  Y  I  *  L  Y  *  I  C  C  S  P  I  W  F  N  H  C  F  G  L  Q  I  L  *  N  C  L  S  H  L  Y  S  M  G  I  N  V  F  L  S  F  I  R  K  L  I  S  F  V  E  G  M  I  T  A  K  I  N  R  Q  S  S  L  L  K  C  K  F   </first_frame>
            <second_frame>  N  F  N  Y  Q  L  N  *  E  T  T  L  *  N  P  S  N  L  Q  L  K  I  L  A  H  Y  I  L  *  Y  N  M  K  E  S  T  T  I  L  V  A  F  P  *  I  P  P  L  F  V  K  S  F  N  F  A  L  K  I  K  I  S  P  F  E  *  W  *  Q  F  S  I  E  L  R  I  R  R  K  C  K  N  *  W  G  I  V  L  D  Q  R  I  L  I  L  I  L  V  T  K  A  T  H  Q  L  D  L  L  P  Q  :  I  H  Q  R  T  T  V  V  V  L  D  F  R  L  V  V  V  L  G  V  A  V  F  Q  Q  L  Q  A  R  I  H  V  R  M  E  K  Y  C  L  L  Q  I  *  R  L  T  V  F  L  I  *  R  L  P  Q  E  I  S  S  L  I  Q  F  W  G  W  E  A  L  G  L  Y  L  K  D  G  S  M  R  R  R  L  L  Q  L  K  L  E  L  G  W  L  L  P  S  R  S  *  T  Q  R  A  C  R  D  L  K  S  G  R :   Q  K  L  T  S  *  E  G  F  H  T  Q  T  L  L  N  C  W  D  I  V  G  K  T  R  N  C  Y  L  Y  M  N  S  C  Q  R  E  A  W  R  T  I  F  S  E  :  G  A  Q  L  L  N  H  F  L  G  S  C  G  S  K  L  P  *  E  R  H  E  V  *  L  F  Y  I  L  Q  K  S  R  S  F  T  E  I  S  R  P  P  I  Y  F  S  M  G :   V  T  M  Q  S  Y  P  I  L  A  *  L  K  L  G  L  Q  L  G  T  H  M  *  L  L  V  S  W  E  H  M  V  M  L  L  L  N  T  L  Q  Q  :  V  I  C  M  *  K  V  M  Y  M  D  L  V  L  S  C  L  S  C  *  Q  A  Y  E  H  L  T  Q  N  D  L  A  D  S  I  I  W  W  T  G  *  N  R  C  F  L  T  K  G  S  *  S  P  L  W  T  P  E  W  K  A  N  I  V  Q  R  Q  Q  Y  L  L  L  S  L  L  *  N  A  *  K  E  N  L  R  R  G  L  L  *  K  K  *  W  K  Y  W  N  K  L  N  *  *  R  R  N  Q  N  L  P  K  A  N  P  S  L  H  L  I  D  T  S  S  H  R  E  V  I  L  L  H  V  V  Q  A  T  M  D  P  E  P  D  L  E  D  D  R  Y  N  W  K  G  K  R  E  L  L  K  N  E  F  V  Y  T  F  N  C  I  E  F  V  V  V  Q  F  G  L  I  I  V  L  D  Y  K  F  C  K  I  V  C  H  I  C  T  P  W  E  *  M  Y  F  Y  R  L  *  E  N  *  F  H  L  W  K  V  *  L  Q  L  R  L  T  G  S  P  A  C  *  N  V  N  L  </second_frame>
            <third_frame>   T  S  T  I  S  *  I  R  K  P  H  C  K  I  P  A  I  Y  S  *  K  F  W  R  I  I  S  Y  N  I  I  *  R  N  Q  Q  Q  Y  *  *  L  F  P  K  F  H  R  F  L  S  K  V  S  T  L  L  *  K  S  R  F  L  L  L  N  D  G  S  N  L  V  L  S  *  E  *  E  E  S  V  K  I  D  G  E  L  F  W  I  R  E  S  *  S  *  S  *  *  Q  K  Q  L  I  N  *  T  F  Y  P  R :   Y  I  K  E  L  Q  W  W  C  W  I  F  D  *  *  *  Y  W  A  *  P  F  F  S  S  C  K  R  G  F  M  F  E  W  R  N  I  A  Y  S  K  F  E  D  L  Q  F  F  *  S  E  G  C  H  K  K  F  Q  V  *  Y  S  F  G  G  G  R  L  W  D  C  I  *  R  M  G  R  *  E  D  A  Y  S  N  *  S  W  N  W  D  G  C  C  H  Q  E  V  E  L  R  E  H  A  G  I  *  R  V  A   : G  R  S  *  L  L  R  K  A  F  T  P  K  P  C  *  I  V  G  I  L  L  G  R  Q  G  T  V  T  C  I  *  I  H  A  K  G  K  L  G  E  P  S  F  Q  K :   E  H  S  Y  *  T  T  F  L  G  V  A  A  Q  N  C  H  R  S  G  T  R  F  S  F  S  T  F  F  R  K  A  D  H  L  Q  R  F  Q  G  L  Q  Y  T  S  R  W   : E  L  P  C  K  V  I  R  F  W  L  S  *  S  W  A  F  S  W  E  L  T  C  D  Y  S  Y  H  G  N  I  W  L  C  C  S  *  I  H  C  N  R :   S  S  V  C  K  K  *  C  I  W  I  W  C  C  L  A  *  A  V  N  R  L  T  S  T  *  H  K  T  T  W  R  T  A  *  F  G  G  L  D  E  T  D  A  F  *  Q  K  E  A  E  V  H  Y  G  R  P  N  G  R  P  I  *  F  K  G  S  N  T  Y  C  S  A  Y  Y  K  M  P  R  R  R  T  *  E  E  A  F  Y  E  R  S  S  G  S  I  G  T  S  *  I  D  K  G  E  I  K  T  F  Q  K  Q  I  R  V  F  I  S  S  I  Q  A  V  T  E  K  L  S  F  S  T  W  C  K  Q  P  W  I  R  S  R  I  W  K  M  T  G  T  T  G  K  A  N  A  S  C  *  K  M  S  L  F  I  H  L  I  V  L  N  L  L  *  S  N  L  V  *  S  L  F  W  I  T  N  F  V  K  L  S  V  T  S  V  L  H  G  N  K  C  I  S  I  V  Y  K  K  T  D  F  I  C  G  R  Y  D  Y  S  *  D  *  Q  A  V  Q  P  V  E  M  *  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74769" stop="74682"/>
                    <exon start="74310" stop="73982"/>
                    <exon start="72477" stop="72342"/>
                    <exon start="72258" stop="72116"/>
                    <exon start="70942" stop="70819"/>
                    <exon start="70225" stop="69792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLMGNCFGSENLDPNPSNKSNSSTRPSTPDTSKNYSGGVGFSTSSSTGRSRFSAAASEDSCSNGEILPTPNLKTYSFSDLKAATRNFKSDTVLGVGGFGTVFKGWVDEKTLTPTKVGTGMVVAIKKLNSESMQGFEEWQAEVNFLGRLSHPNLVKLLGYCWEDKELLLVYEFMPKGSLENHLFRRSTAIEPLSWELRLKIAIGAARGLAFLHSSEKQIIYRDFKASNILLDGSYHAKLSDFGLAKVGPSAGNSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLELLTGLRALDTKRPGGQHNLVDWMKPMLSNKRKLKSIMDARMEGQYSSKAAILTAQLTIKCLEGEPKKRPSMKEVVEVLEQVELIKEKSKPSKSKSESSSHRYKQSPRSYPSPRGASNHGSGAGSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="75810" PGL_stop="76254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75810" e_stop="76254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="75810" e_stop="76254" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75810" stop="76254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACACAAAAAATAGTTTAATTGTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAAACAAAATAAGAATAAAAAATTCAAATAATGATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATCAAAATATACTTTGAAATTTGATAGAAGAATCATATATGTCCCTAAATAATTTTTTTTAAAAAAATAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCTGTTAAATAAAGGGTATATATGAGTCATTTTGTAACTGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGGGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCATT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  I  V  *  L  F  I  L  *  T  K  E  *  K  K  K  N  K  I  R  I  K  N  S  N  N  D  N  K  R  S  Q  K  I  I  Y  V  *  K  K  S  K  Y  T  L  K  F  D  R  R  I  I  Y  V  P  K  *  F  F  L  K  K  *  K  *  *  I  *  I  *  N  *  F  F  N  F  C  *  I  K  G  I  Y  E  S  F  C  N  C  R  G  I  C  E  P  F  V  *  R  *  G  H  I  W  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  H  </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  H  K  K  *  F  N  C  L  F  F  K  L  R  N  E  R  K  K  T  K  *  E  *  K  I  Q  I  M  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  Q  N  I  L  *  N  L  I  E  E  S  Y  M  S  L  N  N  F  F  *  K  N  K  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  M  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  G  P  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  I </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  T  K  N  S  L  I  V  Y  S  L  N  *  G  M  K  E  K  K  Q  N  K  N  K  K  F  K  *  *  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  F  E  I  *  *  K  N  H  I  C  P  *  I  I  F  F  K  K  I  K  V  I  N  I  N  L  K  L  I  F  *  L  L  L  N  K  G  Y  I  *  V  I  L  *  L  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  G  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0332B10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="88339" PGL_stop="86058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88339" e_stop="88210"/>
            <exon e_start="87061" e_stop="86058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88339" e_stop="88210" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="88209" i_stop="87062" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="87061" e_stop="86058" e_length="1004"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88339" stop="88210"/>
              <exon start="87061" stop="86399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88311" stop="88210"/>
              <exon start="87061" stop="86668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87004" stop="86402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86941" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86689" stop="86058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86674" stop="86140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATACAATTGAGAGCTTTCTGGGCCTTTACACAGCACTTGTTCGCTAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGG : GGCAATGTTGGGGAGCGGGGGGTTTTCAGACGGGTACGAGATCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAACAGCAGTGCAAGTGGCTATCAGCAGGCTTTTGACTATGATAACAGATGTCAGCCTTCTGCCTTTCCTGTTGTTCGTTTAAGGGGTCTTCCATTTGATTGCACTGAAATTGACATTTACAAGTTCTTTGCTGGCCTGGACATTGTGGATATTTTTGTGGTCAACAAGGATGGTAGGTTCTCTGGAGAAGCATTTGTTGTCTTTGCTGGTCACATTCAAGTGGATTATGCTCTTCGGAGGGATAGACAGAACATGGGGAGGAGATATGTAGAGGTTTTCAGTTGCAAGAAGCAAGATTATTACCAAGCTATAGCTGCTGAGGTGAAGGAAGGAGGTTATGAATCTGACTACCGTGCTTCCCCTCCACCTCGTCCAAAGAGGGCCCAGAACAAAGATCAAATGGAGTACACAGAGATACTGAAGATGCGCGGTCTCCCTTACCGTTGTAAGAAATCTGATATCCTCAAGTTTTTTGGTGATGAATTTAACCTTACAGATGACAAGATAAACATTACCTACCGCTCGGATGGAAAAGCTACTGGTGATGCTTATGTGGAGTTTGCATCGGCTGAGGAGGCAAAGAAAGCTATGTGCAAGGACAATATGGAGATTGGATCAAGGTACATCGAGCTATTTCCTTCATATCCAGATGAAGCAAGACAAGGTGGATCAAGATCACGACGATGATGGAGAAGATCTCCTAGTATGAAATTTTTCATTTTGGGTTTAGACATTAAGTCCAGTTAAAGACTTTCTCACCCTGTTCCCGTATTATGTTTTCTACACAATATATATGAACCTGTGGAAGTTATCGAACTGTCCGTCTTGGATGTCTTAGTTGTGGTATCGGCCAACTCACTTTCAACTCTTGTGCCATCAATTGATTGTCTTTTTGTTGTGTTGTTTCGTTATG</gDNA_template>
            <first_frame> I  I  Q  L  R  A  F  W  A  F  T  Q  H  L  F  A  R  V  S  V  Q  I  F  D  F  R  F  I  *  I  V  F  C  K  L  A  K  L  C  T  D  Q  G   : G  Q  C  W  G  A  G  G  F  Q  T  G  T  R  S  A  Q  R  D  Q  E  *  W  N  Q  I  P  T  S  Q  *  T  A  V  Q  V  A  I  S  R  L  L  T  M  I  T  D  V  S  L  L  P  F  L  L  F  V  *  G  V  F  H  L  I  A  L  K  L  T  F  T  S  S  L  L  A  W  T  L  W  I  F  L  W  S  T  R  M  V  G  S  L  E  K  H  L  L  S  L  L  V  T  F  K  W  I  M  L  F  G  G  I  D  R  T  W  G  G  D  M  *  R  F  S  V  A  R  S  K  I  I  T  K  L  *  L  L  R  *  R  K  E  V  M  N  L  T  T  V  L  P  L  H  L  V  Q  R  G  P  R  T  K  I  K  W  S  T  Q  R  Y  *  R  C  A  V  S  L  T  V  V  R  N  L  I  S  S  S  F  L  V  M  N  L  T  L  Q  M  T  R  *  T  L  P  T  A  R  M  E  K  L  L  V  M  L  M  W  S  L  H  R  L  R  R  Q  R  K  L  C  A  R  T  I  W  R  L  D  Q  G  T  S  S  Y  F  L  H  I  Q  M  K  Q  D  K  V  D  Q  D  H  D  D  D  G  E  D  L  L  V  *  N  F  S  F  W  V  *  T  L  S  P  V  K  D  F  L  T  L  F  P  Y  Y  V  F  Y  T  I  Y  M  N  L  W  K  L  S  N  C  P  S  W  M  S  *  L  W  Y  R  P  T  H  F  Q  L  L  C  H  Q  L  I  V  F  L  L  C  C  F  V  M </first_frame>
            <second_frame>  *  Y  N  *  E  L  S  G  P  L  H  S  T  C  S  L  G  F  R  C  R  F  L  I  F  A  S  S  E  S  F  S  A  N  L  R  S  Y  V  R  I  K  G  :  G  N  V  G  E  R  G  V  F  R  R  V  R  D  R  L  K  E  T  K  N  D  G  I  K  S  L  L  R  S  E  Q  Q  C  K  W  L  S  A  G  F  *  L  *  *  Q  M  S  A  F  C  L  S  C  C  S  F  K  G  S  S  I  *  L  H  *  N  *  H  L  Q  V  L  C  W  P  G  H  C  G  Y  F  C  G  Q  Q  G  W  *  V  L  W  R  S  I  C  C  L  C  W  S  H  S  S  G  L  C  S  S  E  G  *  T  E  H  G  E  E  I  C  R  G  F  Q  L  Q  E  A  R  L  L  P  S  Y  S  C  *  G  E  G  R  R  L  *  I  *  L  P  C  F  P  S  T  S  S  K  E  G  P  E  Q  R  S  N  G  V  H  R  D  T  E  D  A  R  S  P  L  P  L  *  E  I  *  Y  P  Q  V  F  W  *  *  I  *  P  Y  R  *  Q  D  K  H  Y  L  P  L  G  W  K  S  Y  W  *  C  L  C  G  V  C  I  G  *  G  G  K  E  S  Y  V  Q  G  Q  Y  G  D  W  I  K  V  H  R  A  I  S  F  I  S  R  *  S  K  T  R  W  I  K  I  T  T  M  M  E  K  I  S  *  Y  E  I  F  H  F  G  F  R  H  *  V  Q  L  K  T  F  S  P  C  S  R  I  M  F  S  T  Q  Y  I  *  T  C  G  S  Y  R  T  V  R  L  G  C  L  S  C  G  I  G  Q  L  T  F  N  S  C  A  I  N  *  L  S  F  C  C  V  V  S  L   </second_frame>
            <third_frame>   N  T  I  E  S  F  L  G  L  Y  T  A  L  V  R  *  G  F  G  A  D  F  *  F  S  L  H  L  N  R  F  L  Q  T  C  E  A  M  Y  G  S  R  G :   A  M  L  G  S  G  G  F  S  D  G  Y  E  I  G  S  K  R  P  R  M  M  E  S  N  P  Y  F  A  V  N  S  S  A  S  G  Y  Q  Q  A  F  D  Y  D  N  R  C  Q  P  S  A  F  P  V  V  R  L  R  G  L  P  F  D  C  T  E  I  D  I  Y  K  F  F  A  G  L  D  I  V  D  I  F  V  V  N  K  D  G  R  F  S  G  E  A  F  V  V  F  A  G  H  I  Q  V  D  Y  A  L  R  R  D  R  Q  N  M  G  R  R  Y  V  E  V  F  S  C  K  K  Q  D  Y  Y  Q  A  I  A  A  E  V  K  E  G  G  Y  E  S  D  Y  R  A  S  P  P  P  R  P  K  R  A  Q  N  K  D  Q  M  E  Y  T  E  I  L  K  M  R  G  L  P  Y  R  C  K  K  S  D  I  L  K  F  F  G  D  E  F  N  L  T  D  D  K  I  N  I  T  Y  R  S  D  G  K  A  T  G  D  A  Y  V  E  F  A  S  A  E  E  A  K  K  A  M  C  K  D  N  M  E  I  G  S  R  Y  I  E  L  F  P  S  Y  P  D  E  A  R  Q  G  G  S  R  S  R  R  *  W  R  R  S  P  S  M  K  F  F  I  L  G  L  D  I  K  S  S  *  R  L  S  H  P  V  P  V  L  C  F  L  H  N  I  Y  E  P  V  E  V  I  E  L  S  V  L  D  V  L  V  V  V  S  A  N  S  L  S  T  L  V  P  S  I  D  C  L  F  V  V  L  F  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88268" stop="88210"/>
                    <exon start="87061" stop="86284"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLHLNRFLQTCEAMYGSRGAMLGSGGFSDGYEIGSKRPRMMESNPYFAVNSSASGYQQAFDYDNRCQPSAFPVVRLRGLPFDCTEIDIYKFFAGLDIVDIFVVNKDGRFSGEAFVVFAGHIQVDYALRRDRQNMGRRYVEVFSCKKQDYYQAIAAEVKEGGYESDYRASPPPRPKRAQNKDQMEYTEILKMRGLPYRCKKSDILKFFGDEFNLTDDKINITYRSDGKATGDAYVEFASAEEAKKAMCKDNMEIGSRYIELFPSYPDEARQGGSRSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88292" e_stop="87643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="88292" e_stop="87643" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88292" stop="87643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88272" stop="87714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGGTTTCGGTGCAGATTTTTGATTTTCGCTTCATCTGAATCGTTTTCTGCAAACTTGCGAAGCTATGTACGGATCAAGGGGGTAAGTTTATCTTACTTGATTCATTCTTCTCCTATCTGTTCATGTGGGTGTTCTTTCTTTTTCTATGTCGATGTTTGTTTTCAAATTTTGTTTGTAGCAGTTGACGAATTTATATGATGCTTTCTGTTTGTGCCTTGTAGTAATTAATTATTGATTCTTTTTCTAGGTTGATTTTGCCTTTAGATTGTAAAATTAACACTTTCTTTTGCTATATATGGGAGGGTGAATTCGATAGCATGGGGTTTCTGAGCTGCTCTAGCATGCTTGTTACTTCAAGATTATCCTTTGATTGTTTCAACACCATAACTGAAGGATAAATTACAGTTACATGTATCTATAACAATTATCCTATATATTAACGGTTCATTATAACCCCCAAGTTTTTTTTCTTTTGGTGTTTTATGATCTTTATAACAACATTATGATATAGCATCCAAGTAATATCCGTTATAGAGAAGTTTGCCTCTACACCTTTTCAGGGAGTTGTGGATTTCTGGTTCAAAAATAAAGTTACTGATCTCTAGGAAGTTCTTACTAGCAATAATTTTTTTTTGCATCAAGATGAAT</gDNA_template>
            <first_frame> *  G  F  G  A  D  F  *  F  S  L  H  L  N  R  F  L  Q  T  C  E  A  M  Y  G  S  R  G  *  V  Y  L  T  *  F  I  L  L  L  S  V  H  V  G  V  L  S  F  S  M  S  M  F  V  F  K  F  C  L  *  Q  L  T  N  L  Y  D  A  F  C  L  C  L  V  V  I  N  Y  *  F  F  F  *  V  D  F  A  F  R  L  *  N  *  H  F  L  L  L  Y  M  G  G  *  I  R  *  H  G  V  S  E  L  L  *  H  A  C  Y  F  K  I  I  L  *  L  F  Q  H  H  N  *  R  I  N  Y  S  Y  M  Y  L  *  Q  L  S  Y  I  L  T  V  H  Y  N  P  Q  V  F  F  L  L  V  F  Y  D  L  Y  N  N  I  M  I  *  H  P  S  N  I  R  Y  R  E  V  C  L  Y  T  F  S  G  S  C  G  F  L  V  Q  K  *  S  Y  *  S  L  G  S  S  Y  *  Q  *  F  F  F  A  S  R  *   </first_frame>
            <second_frame>  R  V  S  V  Q  I  F  D  F  R  F  I  *  I  V  F  C  K  L  A  K  L  C  T  D  Q  G  G  K  F  I  L  L  D  S  F  F  S  Y  L  F  M  W  V  F  F  L  F  L  C  R  C  L  F  S  N  F  V  C  S  S  *  R  I  Y  M  M  L  S  V  C  A  L  *  *  L  I  I  D  S  F  S  R  L  I  L  P  L  D  C  K  I  N  T  F  F  C  Y  I  W  E  G  E  F  D  S  M  G  F  L  S  C  S  S  M  L  V  T  S  R  L  S  F  D  C  F  N  T  I  T  E  G  *  I  T  V  T  C  I  Y  N  N  Y  P  I  Y  *  R  F  I  I  T  P  K  F  F  F  F  W  C  F  M  I  F  I  T  T  L  *  Y  S  I  Q  V  I  S  V  I  E  K  F  A  S  T  P  F  Q  G  V  V  D  F  W  F  K  N  K  V  T  D  L  *  E  V  L  T  S  N  N  F  F  L  H  Q  D  E  </second_frame>
            <third_frame>   G  F  R  C  R  F  L  I  F  A  S  S  E  S  F  S  A  N  L  R  S  Y  V  R  I  K  G  V  S  L  S  Y  L  I  H  S  S  P  I  C  S  C  G  C  S  F  F  F  Y  V  D  V  C  F  Q  I  L  F  V  A  V  D  E  F  I  *  C  F  L  F  V  P  C  S  N  *  L  L  I  L  F  L  G  *  F  C  L  *  I  V  K  L  T  L  S  F  A  I  Y  G  R  V  N  S  I  A  W  G  F  *  A  A  L  A  C  L  L  L  Q  D  Y  P  L  I  V  S  T  P  *  L  K  D  K  L  Q  L  H  V  S  I  T  I  I  L  Y  I  N  G  S  L  *  P  P  S  F  F  S  F  G  V  L  *  S  L  *  Q  H  Y  D  I  A  S  K  *  Y  P  L  *  R  S  L  P  L  H  L  F  R  E  L  W  I  S  G  S  K  I  K  L  L  I  S  R  K  F  L  L  A  I  I  F  F  C  I  K  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88290" stop="88093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRCRFLIFASSESFSANLRSYVRIKGVSLSYLIHSSPICSCGCSFFFYVDVCFQILFVAVDEFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="97036" PGL_stop="100699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97036" e_stop="97292"/>
            <exon e_start="97762" e_stop="97846"/>
            <exon e_start="99447" e_stop="99501"/>
            <exon e_start="100147" e_stop="100285"/>
            <exon e_start="100548" e_stop="100699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97036" e_stop="97292" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="97293" i_stop="97761" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97762" e_stop="97846" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.933">
            <gDNA_intron_boundary i_start="97847" i_stop="99446" i_length="1600"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99447" e_stop="99501" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.877">
            <gDNA_intron_boundary i_start="99502" i_stop="100146" i_length="645"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100147" e_stop="100285" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100286" i_stop="100547" i_length="262"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100548" e_stop="100699" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97036" stop="97292"/>
              <exon start="97762" stop="97846"/>
              <exon start="99447" stop="99501"/>
              <exon start="100147" stop="100285"/>
              <exon start="100548" stop="100699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTTGAGAGTTATCTTCTTGAATCCCTGATCAAATCTGCAATTCGTCGACGTTGATGCCGGAGTAACAGTGGCATGGCGGAGGCATTGGCCATTGCAGTAGGAAAATACACATACGTACATGAAGTGGGTAAAGGCCCACCTGAAGCCATTGACGCTCACCATATTGTGGTTCGAAGGAGTAGAGAAAAGGGTTTCAATTTATGCCTATTTACTCTTCTCCTTTTTGCCTATCCCACCTTTCTGTTATTCCGGCAG : GGAAAGCTAGATACTCTTCATATTTGGAGCTTAGTTATCATGACATTGCTTATGAGGTTATTTCTAAAGAAGCCAGTTAAGAAAG : AGTCTGTTCTAATTCTTCCAGCTTTTGGAGTTCAACTTGAGACTCAGTATGGAAG : TGGGAAAACAGTTCGCCAGTTTGTCCCCATCAGCAGGATTTTGAAACCAGTGCTGACAGAATGTGTCACACCAATCACCTGTTATTGGAGTCTGTCTTTGATTATTCGAGGAGAGGAAGAACTTATGCTAGTATTCAAG : GAATTACGTCCACCAGTGAAGATGTTAGCGCCCATCTGGAAGGCTTTATGTGCTGCCATTGAATGTGGAGAATGCACGGAGACGATTACATAGATTGTAATAGTATAATCTCAACCAATTCAATTCTAGTATAAATTTTTTTTCCAGCATTT</gDNA_template>
            <first_frame> P  L  R  V  I  F  L  N  P  *  S  N  L  Q  F  V  D  V  D  A  G  V  T  V  A  W  R  R  H  W  P  L  Q  *  E  N  T  H  T  Y  M  K  W  V  K  A  H  L  K  P  L  T  L  T  I  L  W  F  E  G  V  E  K  R  V  S  I  Y  A  Y  L  L  F  S  F  L  P  I  P  P  F  C  Y  S  G  R :   E  S  *  I  L  F  I  F  G  A  *  L  S  *  H  C  L  *  G  Y  F  *  R  S  Q  L  R  K  :  S  L  F  *  F  F  Q  L  L  E  F  N  L  R  L  S  M  E   : V  G  K  Q  F  A  S  L  S  P  S  A  G  F  *  N  Q  C  *  Q  N  V  S  H  Q  S  P  V  I  G  V  C  L  *  L  F  E  E  R  K  N  L  C  *  Y  S  R :   N  Y  V  H  Q  *  R  C  *  R  P  S  G  R  L  Y  V  L  P  L  N  V  E  N  A  R  R  R  L  H  R  L  *  *  Y  N  L  N  Q  F  N  S  S  I  N  F  F  S  S  I  </first_frame>
            <second_frame>  R  *  E  L  S  S  *  I  P  D  Q  I  C  N  S  S  T  L  M  P  E  *  Q  W  H  G  G  G  I  G  H  C  S  R  K  I  H  I  R  T  *  S  G  *  R  P  T  *  S  H  *  R  S  P  Y  C  G  S  K  E  *  R  K  G  F  Q  F  M  P  I  Y  S  S  P  F  C  L  S  H  L  S  V  I  P  A   : G  K  A  R  Y  S  S  Y  L  E  L  S  Y  H  D  I  A  Y  E  V  I  S  K  E  A  S  *  E  R :   V  C  S  N  S  S  S  F  W  S  S  T  *  D  S  V  W  K  :  W  E  N  S  S  P  V  C  P  H  Q  Q  D  F  E  T  S  A  D  R  M  C  H  T  N  H  L  L  L  E  S  V  F  D  Y  S  R  R  G  R  T  Y  A  S  I  Q   : G  I  T  S  T  S  E  D  V  S  A  H  L  E  G  F  M  C  C  H  *  M  W  R  M  H  G  D  D  Y  I  D  C  N  S  I  I  S  T  N  S  I  L  V  *  I  F  F  P  A  F </second_frame>
            <third_frame>   V  E  S  Y  L  L  E  S  L  I  K  S  A  I  R  R  R  *  C  R  S  N  S  G  M  A  E  A  L  A  I  A  V  G  K  Y  T  Y  V  H  E  V  G  K  G  P  P  E  A  I  D  A  H  H  I  V  V  R  R  S  R  E  K  G  F  N  L  C  L  F  T  L  L  L  F  A  Y  P  T  F  L  L  F  R  Q  :  G  K  L  D  T  L  H  I  W  S  L  V  I  M  T  L  L  M  R  L  F  L  K  K  P  V  K  K   : E  S  V  L  I  L  P  A  F  G  V  Q  L  E  T  Q  Y  G  S :   G  K  T  V  R  Q  F  V  P  I  S  R  I  L  K  P  V  L  T  E  C  V  T  P  I  T  C  Y  W  S  L  S  L  I  I  R  G  E  E  E  L  M  L  V  F  K  :  E  L  R  P  P  V  K  M  L  A  P  I  W  K  A  L  C  A  A  I  E  C  G  E  C  T  E  T  I  T  *  I  V  I  V  *  S  Q  P  I  Q  F  *  Y  K  F  F  F  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97092" stop="97292"/>
                    <exon start="97762" stop="97846"/>
                    <exon start="99447" stop="99501"/>
                    <exon start="100147" stop="100285"/>
                    <exon start="100548" stop="100640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRSNSGMAEALAIAVGKYTYVHEVGKGPPEAIDAHHIVVRRSREKGFNLCLFTLLLFAYPTFLLFRQGKLDTLHIWSLVIMTLLMRLFLKKPVKKESVLILPAFGVQLETQYGSGKTVRQFVPISRILKPVLTECVTPITCYWSLSLIIRGEEELMLVFKELRPPVKMLAPIWKALCAAIECGECTETIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="104060" PGL_stop="102901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104060" e_stop="103112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="104060" e_stop="103112" e_length="949"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104060" stop="103509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104060" stop="103600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103699" stop="103115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103624" stop="103155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103581" stop="103140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103489" stop="103140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103353" stop="103132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103321" stop="103112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103306" stop="103112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGAGAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGTATATTAGTTGCCACTTATTTTTTTACAGAGAACGCC</gDNA_template>
            <first_frame> G  S  I  *  R  L  L  *  Q  I  W  R  F  E  E  D  P  E  A  E  V  W  V  F  R  K  I  T  Y  R  Q  V  Q  V  F  *  N  *  C  S  *  I  C  Q  I  S  L  S  P  S  *  F  *  A  *  E  S  T  N  C  T  A  V  L  A  T  P  M  A  Q  H  *  R  S  K  P  N  R  G  E  E  *  I  W  Y  G  K  G  *  C  W  D  E  K  P  T  S  E  G  R  *  V  M  Y  E  *  M  V  G  L  L  T  A  A  P  L  H  C  P  L  S  P  V  S  D  Y  L  *  I  N  F  G  L  C  L  R  F  N  *  I  Q  V  I  G  R  F  R  C  I  I  L  I  D  Y  H  E  E  T  T  S  K  R  R  N  W  H  *  S  L  K  Y  P  *  V  K  L  P  L  D  L  M  M  L  T  F  T  K  E  T  I  L  H  S  A  N  K  *  V  G  P  C  S  I  E  G  L  E  E  Q  S  K  L  Y  S  V  S  S  L  W  L  H  L  D  S  T  L  S  I  *  E  R  I  F  S  S  L  *  R  T  L  H  *  W  E  P  L  D  L  W  S  V  L  C  T  F  K  H  Q  K  I  W  I  L  W  R  K  F  I  L  H  F  R  R  *  E  R  I  L  F  F  F  D  F  N  S  G  *  S  L  C  N  N  *  Y  I  I  F  F  V  Y  I  T  L  K  Y  I  S  C  H  L  F  F  Y  R  E  R  </first_frame>
            <second_frame>  A  R  S  K  D  Y  F  D  R  Y  G  D  L  K  R  I  R  R  L  K  Y  G  S  L  E  K  L  L  I  D  K  F  R  F  S  E  I  D  A  L  E  F  A  K  F  L  C  P  L  L  D  F  E  P  E  N  R  P  T  A  Q  Q  C  L  Q  H  P  W  L  N  I  K  G  Q  N  Q  T  E  V  K  S  E  S  G  M  E  K  V  N  V  G  M  R  N  L  Q  V  K  A  G  K  *  C  M  N  E  W  L  V  F  S  L  Q  H  R  S  I  A  L  S  P  P  Y  Q  I  T  C  E  L  I  L  D  C  V  *  D  L  I  R  F  K  S  L  V  D  L  D  V  L  F  *  L  I  I  T  R  K  R  P  P  K  G  E  I  G  I  S  P  *  N  I  P  R  *  S  F  H  L  I  *  *  C  *  H  L  Q  K  K  L  S  F  I  P  L  T  N  K  L  A  R  V  L  L  K  A  W  R  N  K  A  S  S  T  A  L  V  V  Y  G  F  I  W  T  Q  H  Y  Q  S  R  K  G  S  L  A  A  C  R  E  H  Y  I  N  G  S  L  L  I  Y  G  V  C  Y  V  H  L  N  I  K  R  F  G  F  C  G  G  S  L  F  S  I  S  A  G  R  K  E  F  F  S  F  L  I  L  T  Q  V  E  V  F  V  T  T  D  I  *  F  F  L  Y  T  S  L  *  S  I  L  V  A  T  Y  F  F  T  E  N  A </second_frame>
            <third_frame>   L  D  L  K  I  T  L  T  D  M  E  I  *  R  G  S  G  G  *  S  M  G  L  *  K  N  Y  L  S  T  S  S  G  F  L  K  L  M  L  L  N  L  P  N  F  F  V  P  F  L  I  L  S  L  R  I  D  Q  L  H  S  S  A  C  N  T  H  G  S  T  L  K  V  K  T  K  Q  R  *  R  V  N  L  V  W  K  R  L  M  L  G  *  E  T  Y  K  *  R  P  V  S  D  V  *  M  N  G  W  S  S  H  C  S  T  A  P  L  P  S  L  P  R  I  R  L  L  V  N  *  F  W  I  V  F  K  I  *  L  D  S  S  H  W  *  I  *  M  Y  Y  F  D  *  L  S  R  G  N  D  L  Q  K  E  K  L  A  L  V  P  E  I  S  L  G  E  A  S  T  *  F  N  D  V  D  I  Y  K  R  N  Y  P  S  F  R  *  Q  I  S  W  P  V  F  Y  *  R  P  G  G  T  K  Q  A  L  Q  R  *  *  S  M  A  S  S  G  L  N  I  I  N  L  G  K  D  L  *  Q  P  V  E  N  I  T  L  M  G  A  S  *  F  M  E  C  V  M  Y  I  *  T  S  K  D  L  D  S  V  E  E  V  Y  S  P  F  P  Q  V  G  K  N  S  F  L  F  *  F  *  L  R  L  K  S  L  *  Q  L  I  Y  N  F  F  C  I  H  H  S  E  V  Y  *  L  P  L  I  F  L  Q  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103510" stop="103175"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLQKKLSFIPLTNKLARVLLKAWRNKASSTALVVYGFIWTQHYQSRKGSLAACREHYINGSLLIYGVCYVHLNIKRFGFCGGSLFSISAGRKEFFSFLILTQVEVFVTTDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104059" stop="103754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARSKDYFDRYGDLKRIRRLKYGSLEKLLIDKFRFSEIDALEFAKFLCPLLDFEPENRPTAQQCLQHPWLNIKGQNQTEVKSESGMEKVNVGMRNLQVKAGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104060" e_stop="103148"/>
            <exon e_start="102912" e_stop="102901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.332" e_score="0.996"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="104060" e_stop="103148" e_length="913"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.332">
            <gDNA_intron_boundary i_start="103147" i_stop="102913" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="102912" e_stop="102901" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104060" stop="103509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104060" stop="103600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103624" stop="103155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103344" stop="103148"/>
              <exon start="102912" stop="102901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557084" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTCGATCTAAAGATTACTTTGACAGATATGGAGATTTGAAGAGGATCCGGAGGCTGAAGTATGGGTCTTTAGAAAAATTACTTATCGACAAGTTCAGGTTTTCTGAAATTGATGCTCTTGAATTTGCCAAATTTCTTTGTCCCCTTCTTGATTTTGAGCCTGAGAATCGACCAACTGCACAGCAGTGCTTGCAACACCCATGGCTCAACATTAAAGGTCAAAACCAAACAGAGGTGAAGAGTGAATCTGGTATGGAAAAGGTTAATGTTGGGATGAGAAACCTACAAGTGAAGGCCGGTAAGTGATGTATGAATGAATGGTTGGTCTTCTCACTGCAGCACCGCTCCATTGCCCTCTCTCCCCCGTATCAGATTACTTGTGAATTAATTTTGGATTGTGTTTAAGATTTAATTAGATTCAAGTCATTGGTAGATTTAGATGTATTATTTTGATTGATTATCACGAGGAAACGACCTCCAAAAGGAGAAATTGGCATTAGTCCCTGAAATATCCCTAGGTGAAGCTTCCACTTGATTTAATGATGTTGACATTTACAAAAGAAACTATCCTTCATTCCGCTAACAAATAAGTTGGCCCGTGTTCTATTGAAGGCCTGGAGGAACAAAGCAAGCTCTACAGCGTTAGTAGTCTATGGCTTCATCTGGACTCAACATTATCAATCTAGGAAAGGATCTTTAGCAGCCTGTAGAGAACATTACATTAATGGGAGCCTCTTGATTTATGGAGTGTGTTATGTACATTTAAACATCAAAAGATTTGGATTCTGTGGAGGAAGTTTATTCTCCATTTCCGCAGGTAGGAAAGAATTCTTTTCTTTTTTGATTTTAACTCAGGTTGAAGTCTTTGTAACAACTGATATATAATTTTTTTTGTATACATCACTCTGAAGT : AACAAAAAAGAA</gDNA_template>
            <first_frame> G  S  I  *  R  L  L  *  Q  I  W  R  F  E  E  D  P  E  A  E  V  W  V  F  R  K  I  T  Y  R  Q  V  Q  V  F  *  N  *  C  S  *  I  C  Q  I  S  L  S  P  S  *  F  *  A  *  E  S  T  N  C  T  A  V  L  A  T  P  M  A  Q  H  *  R  S  K  P  N  R  G  E  E  *  I  W  Y  G  K  G  *  C  W  D  E  K  P  T  S  E  G  R  *  V  M  Y  E  *  M  V  G  L  L  T  A  A  P  L  H  C  P  L  S  P  V  S  D  Y  L  *  I  N  F  G  L  C  L  R  F  N  *  I  Q  V  I  G  R  F  R  C  I  I  L  I  D  Y  H  E  E  T  T  S  K  R  R  N  W  H  *  S  L  K  Y  P  *  V  K  L  P  L  D  L  M  M  L  T  F  T  K  E  T  I  L  H  S  A  N  K  *  V  G  P  C  S  I  E  G  L  E  E  Q  S  K  L  Y  S  V  S  S  L  W  L  H  L  D  S  T  L  S  I  *  E  R  I  F  S  S  L  *  R  T  L  H  *  W  E  P  L  D  L  W  S  V  L  C  T  F  K  H  Q  K  I  W  I  L  W  R  K  F  I  L  H  F  R  R  *  E  R  I  L  F  F  F  D  F  N  S  G  *  S  L  C  N  N  *  Y  I  I  F  F  V  Y  I  T  L  K   : *  Q  K  R  </first_frame>
            <second_frame>  A  R  S  K  D  Y  F  D  R  Y  G  D  L  K  R  I  R  R  L  K  Y  G  S  L  E  K  L  L  I  D  K  F  R  F  S  E  I  D  A  L  E  F  A  K  F  L  C  P  L  L  D  F  E  P  E  N  R  P  T  A  Q  Q  C  L  Q  H  P  W  L  N  I  K  G  Q  N  Q  T  E  V  K  S  E  S  G  M  E  K  V  N  V  G  M  R  N  L  Q  V  K  A  G  K  *  C  M  N  E  W  L  V  F  S  L  Q  H  R  S  I  A  L  S  P  P  Y  Q  I  T  C  E  L  I  L  D  C  V  *  D  L  I  R  F  K  S  L  V  D  L  D  V  L  F  *  L  I  I  T  R  K  R  P  P  K  G  E  I  G  I  S  P  *  N  I  P  R  *  S  F  H  L  I  *  *  C  *  H  L  Q  K  K  L  S  F  I  P  L  T  N  K  L  A  R  V  L  L  K  A  W  R  N  K  A  S  S  T  A  L  V  V  Y  G  F  I  W  T  Q  H  Y  Q  S  R  K  G  S  L  A  A  C  R  E  H  Y  I  N  G  S  L  L  I  Y  G  V  C  Y  V  H  L  N  I  K  R  F  G  F  C  G  G  S  L  F  S  I  S  A  G  R  K  E  F  F  S  F  L  I  L  T  Q  V  E  V  F  V  T  T  D  I  *  F  F  L  Y  T  S  L  *  S  :  N  K  K  E </second_frame>
            <third_frame>   L  D  L  K  I  T  L  T  D  M  E  I  *  R  G  S  G  G  *  S  M  G  L  *  K  N  Y  L  S  T  S  S  G  F  L  K  L  M  L  L  N  L  P  N  F  F  V  P  F  L  I  L  S  L  R  I  D  Q  L  H  S  S  A  C  N  T  H  G  S  T  L  K  V  K  T  K  Q  R  *  R  V  N  L  V  W  K  R  L  M  L  G  *  E  T  Y  K  *  R  P  V  S  D  V  *  M  N  G  W  S  S  H  C  S  T  A  P  L  P  S  L  P  R  I  R  L  L  V  N  *  F  W  I  V  F  K  I  *  L  D  S  S  H  W  *  I  *  M  Y  Y  F  D  *  L  S  R  G  N  D  L  Q  K  E  K  L  A  L  V  P  E  I  S  L  G  E  A  S  T  *  F  N  D  V  D  I  Y  K  R  N  Y  P  S  F  R  *  Q  I  S  W  P  V  F  Y  *  R  P  G  G  T  K  Q  A  L  Q  R  *  *  S  M  A  S  S  G  L  N  I  I  N  L  G  K  D  L  *  Q  P  V  E  N  I  T  L  M  G  A  S  *  F  M  E  C  V  M  Y  I  *  T  S  K  D  L  D  S  V  E  E  V  Y  S  P  F  P  Q  V  G  K  N  S  F  L  F  *  F  *  L  R  L  K  S  L  *  Q  L  I  Y  N  F  F  C  I  H  H  S  E  V :   T  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103510" stop="103175"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLQKKLSFIPLTNKLARVLLKAWRNKASSTALVVYGFIWTQHYQSRKGSLAACREHYINGSLLIYGVCYVHLNIKRFGFCGGSLFSISAGRKEFFSFLILTQVEVFVTTDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104059" stop="103754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARSKDYFDRYGDLKRIRRLKYGSLEKLLIDKFRFSEIDALEFAKFLCPLLDFEPENRPTAQQCLQHPWLNIKGQNQTEVKSESGMEKVNVGMRNLQVKAGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="107192" PGL_stop="104684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107192" e_stop="106993"/>
            <exon e_start="105340" e_stop="104684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107192" e_stop="106993" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106992" i_stop="105341" i_length="1652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105340" e_stop="104684" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107192" stop="106993"/>
              <exon start="105340" stop="104939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105032" stop="104810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105031" stop="104684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGATCGATCATGTCAGGTTCACCGTCCTCATCGTCGGCATCCGAAGATGAAGATGAAGGAATCGATTCGTACAGAAAAGGAGGATATCATGCCGTCAGAATCGGTGATTCATTTTCCGGTGGACGATATATCGCTCAGAGAAAACTTGGCTGGGGAGAATTCTCTACCGTTTGGCTCGCTTATGATACTCGATCATCC : GAATTTGTAGCTTTGAAGATCCAGAAAAGTGCACCACAATTTGCTCAAGCTGCTCTTCACGAAATTGAAGTCCTTTCTGCTATTGCCGACGGTGATACCTCTAATAGTAAATATGTTGTTAGACTTATTGACCATTTTAAGCATACAGGACCAAATGGACAGCATTCATGCATGGTCCTTGAATTTCTTGGTGACAGCTTATTGCGTCTCGTCAAATATAATCGTTATAAAGGCCTTGAGCTGGACAAAGTTAGGGAAATATGCAAGTGCATTCTAATTGGTCTAGATTATTTGCACAGGGAACTTGGAATTATTCATACAGACCTAAAACTTGAAAATGTTCTTTTACTTTCCACGATAAATGCCACAAAGGATCCAATTAGATCGGGAACACCGCCCATACTTGAAAGGCCTGAAGGGATCCCAAAGGGAGGAGCAACTATGAATATTATTGAGAAAAAGCTAAAACAAAGGGCAAGGAGGGCAGCAGCCAGGATATCCGGTAGACGGTCTTCAATGGGTGGGGTAGGAGGAGGTGCGAAAACAAATAGAAGTCTCGATGGTATTGACTTGAAGTGCAAGGTTGTGGATTTTGGAAGTGCATGCTGGGCTGACAAGCAGTTTGCACAAGAAATTCAGACACGACAGTATAGATCT</gDNA_template>
            <first_frame> S  D  R  S  C  Q  V  H  R  P  H  R  R  H  P  K  M  K  M  K  E  S  I  R  T  E  K  E  D  I  M  P  S  E  S  V  I  H  F  P  V  D  D  I  S  L  R  E  N  L  A  G  E  N  S  L  P  F  G  S  L  M  I  L  D  H  P :   N  L  *  L  *  R  S  R  K  V  H  H  N  L  L  K  L  L  F  T  K  L  K  S  F  L  L  L  P  T  V  I  P  L  I  V  N  M  L  L  D  L  L  T  I  L  S  I  Q  D  Q  M  D  S  I  H  A  W  S  L  N  F  L  V  T  A  Y  C  V  S  S  N  I  I  V  I  K  A  L  S  W  T  K  L  G  K  Y  A  S  A  F  *  L  V  *  I  I  C  T  G  N  L  E  L  F  I  Q  T  *  N  L  K  M  F  F  Y  F  P  R  *  M  P  Q  R  I  Q  L  D  R  E  H  R  P  Y  L  K  G  L  K  G  S  Q  R  E  E  Q  L  *  I  L  L  R  K  S  *  N  K  G  Q  G  G  Q  Q  P  G  Y  P  V  D  G  L  Q  W  V  G  *  E  E  V  R  K  Q  I  E  V  S  M  V  L  T  *  S  A  R  L  W  I  L  E  V  H  A  G  L  T  S  S  L  H  K  K  F  R  H  D  S  I  D   </first_frame>
            <second_frame>  L  I  D  H  V  R  F  T  V  L  I  V  G  I  R  R  *  R  *  R  N  R  F  V  Q  K  R  R  I  S  C  R  Q  N  R  *  F  I  F  R  W  T  I  Y  R  S  E  K  T  W  L  G  R  I  L  Y  R  L  A  R  L  *  Y  S  I  I   : R  I  C  S  F  E  D  P  E  K  C  T  T  I  C  S  S  C  S  S  R  N  *  S  P  F  C  Y  C  R  R  *  Y  L  *  *  *  I  C  C  *  T  Y  *  P  F  *  A  Y  R  T  K  W  T  A  F  M  H  G  P  *  I  S  W  *  Q  L  I  A  S  R  Q  I  *  S  L  *  R  P  *  A  G  Q  S  *  G  N  M  Q  V  H  S  N  W  S  R  L  F  A  Q  G  T  W  N  Y  S  Y  R  P  K  T  *  K  C  S  F  T  F  H  D  K  C  H  K  G  S  N  *  I  G  N  T  A  H  T  *  K  A  *  R  D  P  K  G  R  S  N  Y  E  Y  Y  *  E  K  A  K  T  K  G  K  E  G  S  S  Q  D  I  R  *  T  V  F  N  G  W  G  R  R  R  C  E  N  K  *  K  S  R  W  Y  *  L  E  V  Q  G  C  G  F  W  K  C  M  L  G  *  Q  A  V  C  T  R  N  S  D  T  T  V  *  I  </second_frame>
            <third_frame>   *  S  I  M  S  G  S  P  S  S  S  S  A  S  E  D  E  D  E  G  I  D  S  Y  R  K  G  G  Y  H  A  V  R  I  G  D  S  F  S  G  G  R  Y  I  A  Q  R  K  L  G  W  G  E  F  S  T  V  W  L  A  Y  D  T  R  S  S  :  E  F  V  A  L  K  I  Q  K  S  A  P  Q  F  A  Q  A  A  L  H  E  I  E  V  L  S  A  I  A  D  G  D  T  S  N  S  K  Y  V  V  R  L  I  D  H  F  K  H  T  G  P  N  G  Q  H  S  C  M  V  L  E  F  L  G  D  S  L  L  R  L  V  K  Y  N  R  Y  K  G  L  E  L  D  K  V  R  E  I  C  K  C  I  L  I  G  L  D  Y  L  H  R  E  L  G  I  I  H  T  D  L  K  L  E  N  V  L  L  L  S  T  I  N  A  T  K  D  P  I  R  S  G  T  P  P  I  L  E  R  P  E  G  I  P  K  G  G  A  T  M  N  I  I  E  K  K  L  K  Q  R  A  R  R  A  A  A  R  I  S  G  R  R  S  S  M  G  G  V  G  G  G  A  K  T  N  R  S  L  D  G  I  D  L  K  C  K  V  V  D  F  G  S  A  C  W  A  D  K  Q  F  A  Q  E  I  Q  T  R  Q  Y  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107187" stop="106993"/>
                    <exon start="105340" stop="104684"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIMSGSPSSSSASEDEDEGIDSYRKGGYHAVRIGDSFSGGRYIAQRKLGWGEFSTVWLAYDTRSSEFVALKIQKSAPQFAQAALHEIEVLSAIADGDTSNSKYVVRLIDHFKHTGPNGQHSCMVLEFLGDSLLRLVKYNRYKGLELDKVREICKCILIGLDYLHRELGIIHTDLKLENVLLLSTINATKDPIRSGTPPILERPEGIPKGGATMNIIEKKLKQRARRAAARISGRRSSMGGVGGGAKTNRSLDGIDLKCKVVDFGSACWADKQFAQEIQTRQYRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="111721" PGL_stop="115993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111721" e_stop="112109"/>
            <exon e_start="115238" e_stop="115993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.995"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="111721" e_stop="112109" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112110" i_stop="115237" i_length="3128"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="115238" e_stop="115993" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111721" stop="112109"/>
              <exon start="115238" stop="115646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111747" stop="112109"/>
              <exon start="115238" stop="115639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115422" stop="115993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGAAAACCATGCTTTGATCACAACACATAAAACTACCACGGCGAATGCACTCTGTTTTTTCACTTTACCCCATTCATTCTCTCTAGCCTCCGGCACCGGCAAGTCGCCGTCGGCTGACATTCTAAAACCCTTTGAGTTTTTAGATCAAACTTTGCTATAAATGATTCGATAACGATTGCTTTACCCACAGATCTAATTCAGAACCGCAATCAATCGGGGGAAGATATCTCAATTGACTAATGGCTGCACAGAATCAGAGTCCGAATATGGATCAATTTGACGCCTATTTTCGGCGAGCTGATTTGGATCAGGATGGTCGGATCAGTGGCCCTGAGGCCGTTGCATTTCTCAAAGGCTCAAATTTGCCCCAACCAGTCCTCGCTCAG : ATTTGGACATATGCTGATCAAAGTCGTACTGGCTACCTTAGTCGCCAAGAATTTTACAATACTCTCAAGCTTGTTACGGTAGCACAAAAACGAGAGTTGACTCCAGAAATAGTGAAGGCTGCACTATTCACTCCAGCTTCAGCCAAAATTCCTGCTCCCCAAATAAACCTTGCAGTCATACCAGGTCCTCAACCAACTAATAAGGTTGGTTCTACAGTTCCTCCAGTTGGTGGTGCTACTCCAACAGCAACTCAAACTTTCGGCGTTAGGGGTCCACAAGGCTTACCAGCTCAGCAAAGTTATGTGGGGCCTCCTAGGCCCTCAAATCCTAGCCCTGGTTTCCAATCTCAACCAAATGTTTCCGGACAAGGAATGCTAGTTGGAAGTACTATTGCAGCTTCTCGCCCTCCCAGTTCCACTGATTTGTTTGCTGGTCAGAATGGTCGCTCACAATCAGGTGCCAATTCCCAAGCTCCTAATTCAAGTGGCAGTTCTAGAAGTCAGGATGCATTTGGTCTGGCTGTATCAACACCTTCTGCACAACAAACACAACAAGCAACCATGTCATCAGTGCAACCAAATCTATCAAAATCAAATAATGCAACTTTGTCGCATGGCAACCTGCTTGAAGCCAAGATGCCTAAAGCTGTTTCAGTTGCAGGAAATGGATTTCCATCCGATTCACTCTTTGGAGATGTTTTTTCAGTTGCCTCAGTTCAACCAAATCAAAGCTCCACACCAACTATATCTTCAGCT</gDNA_template>
            <first_frame> K  *  K  P  C  F  D  H  N  T  *  N  Y  H  G  E  C  T  L  F  F  H  F  T  P  F  I  L  S  S  L  R  H  R  Q  V  A  V  G  *  H  S  K  T  L  *  V  F  R  S  N  F  A  I  N  D  S  I  T  I  A  L  P  T  D  L  I  Q  N  R  N  Q  S  G  E  D  I  S  I  D  *  W  L  H  R  I  R  V  R  I  W  I  N  L  T  P  I  F  G  E  L  I  W  I  R  M  V  G  S  V  A  L  R  P  L  H  F  S  K  A  Q  I  C  P  N  Q  S  S  L  R :   F  G  H  M  L  I  K  V  V  L  A  T  L  V  A  K  N  F  T  I  L  S  S  L  L  R  *  H  K  N  E  S  *  L  Q  K  *  *  R  L  H  Y  S  L  Q  L  Q  P  K  F  L  L  P  K  *  T  L  Q  S  Y  Q  V  L  N  Q  L  I  R  L  V  L  Q  F  L  Q  L  V  V  L  L  Q  Q  Q  L  K  L  S  A  L  G  V  H  K  A  Y  Q  L  S  K  V  M  W  G  L  L  G  P  Q  I  L  A  L  V  S  N  L  N  Q  M  F  P  D  K  E  C  *  L  E  V  L  L  Q  L  L  A  L  P  V  P  L  I  C  L  L  V  R  M  V  A  H  N  Q  V  P  I  P  K  L  L  I  Q  V  A  V  L  E  V  R  M  H  L  V  W  L  Y  Q  H  L  L  H  N  K  H  N  K  Q  P  C  H  Q  C  N  Q  I  Y  Q  N  Q  I  M  Q  L  C  R  M  A  T  C  L  K  P  R  C  L  K  L  F  Q  L  Q  E  M  D  F  H  P  I  H  S  L  E  M  F  F  Q  L  P  Q  F  N  Q  I  K  A  P  H  Q  L  Y  L  Q   </first_frame>
            <second_frame>  N  E  N  H  A  L  I  T  T  H  K  T  T  T  A  N  A  L  C  F  F  T  L  P  H  S  F  S  L  A  S  G  T  G  K  S  P  S  A  D  I  L  K  P  F  E  F  L  D  Q  T  L  L  *  M  I  R  *  R  L  L  Y  P  Q  I  *  F  R  T  A  I  N  R  G  K  I  S  Q  L  T  N  G  C  T  E  S  E  S  E  Y  G  S  I  *  R  L  F  S  A  S  *  F  G  S  G  W  S  D  Q  W  P  *  G  R  C  I  S  Q  R  L  K  F  A  P  T  S  P  R  S   : D  L  D  I  C  *  S  K  S  Y  W  L  P  *  S  P  R  I  L  Q  Y  S  Q  A  C  Y  G  S  T  K  T  R  V  D  S  R  N  S  E  G  C  T  I  H  S  S  F  S  Q  N  S  C  S  P  N  K  P  C  S  H  T  R  S  S  T  N  *  *  G  W  F  Y  S  S  S  S  W  W  C  Y  S  N  S  N  S  N  F  R  R  *  G  S  T  R  L  T  S  S  A  K  L  C  G  A  S  *  A  L  K  S  *  P  W  F  P  I  S  T  K  C  F  R  T  R  N  A  S  W  K  Y  Y  C  S  F  S  P  S  Q  F  H  *  F  V  C  W  S  E  W  S  L  T  I  R  C  Q  F  P  S  S  *  F  K  W  Q  F  *  K  S  G  C  I  W  S  G  C  I  N  T  F  C  T  T  N  T  T  S  N  H  V  I  S  A  T  K  S  I  K  I  K  *  C  N  F  V  A  W  Q  P  A  *  S  Q  D  A  *  S  C  F  S  C  R  K  W  I  S  I  R  F  T  L  W  R  C  F  F  S  C  L  S  S  T  K  S  K  L  H  T  N  Y  I  F  S  </second_frame>
            <third_frame>   M  K  T  M  L  *  S  Q  H  I  K  L  P  R  R  M  H  S  V  F  S  L  Y  P  I  H  S  L  *  P  P  A  P  A  S  R  R  R  L  T  F  *  N  P  L  S  F  *  I  K  L  C  Y  K  *  F  D  N  D  C  F  T  H  R  S  N  S  E  P  Q  S  I  G  G  R  Y  L  N  *  L  M  A  A  Q  N  Q  S  P  N  M  D  Q  F  D  A  Y  F  R  R  A  D  L  D  Q  D  G  R  I  S  G  P  E  A  V  A  F  L  K  G  S  N  L  P  Q  P  V  L  A  Q  :  I  W  T  Y  A  D  Q  S  R  T  G  Y  L  S  R  Q  E  F  Y  N  T  L  K  L  V  T  V  A  Q  K  R  E  L  T  P  E  I  V  K  A  A  L  F  T  P  A  S  A  K  I  P  A  P  Q  I  N  L  A  V  I  P  G  P  Q  P  T  N  K  V  G  S  T  V  P  P  V  G  G  A  T  P  T  A  T  Q  T  F  G  V  R  G  P  Q  G  L  P  A  Q  Q  S  Y  V  G  P  P  R  P  S  N  P  S  P  G  F  Q  S  Q  P  N  V  S  G  Q  G  M  L  V  G  S  T  I  A  A  S  R  P  P  S  S  T  D  L  F  A  G  Q  N  G  R  S  Q  S  G  A  N  S  Q  A  P  N  S  S  G  S  S  R  S  Q  D  A  F  G  L  A  V  S  T  P  S  A  Q  Q  T  Q  Q  A  T  M  S  S  V  Q  P  N  L  S  K  S  N  N  A  T  L  S  H  G  N  L  L  E  A  K  M  P  K  A  V  S  V  A  G  N  G  F  P  S  D  S  L  F  G  D  V  F  S  V  A  S  V  Q  P  N  Q  S  S  T  P  T  I  S  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111960" stop="112109"/>
                    <exon start="115238" stop="115993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMAAQNQSPNMDQFDAYFRRADLDQDGRISGPEAVAFLKGSNLPQPVLAQIWTYADQSRTGYLSRQEFYNTLKLVTVAQKRELTPEIVKAALFTPASAKIPAPQINLAVIPGPQPTNKVGSTVPPVGGATPTATQTFGVRGPQGLPAQQSYVGPPRPSNPSPGFQSQPNVSGQGMLVGSTIAASRPPSSTDLFAGQNGRSQSGANSQAPNSSGSSRSQDAFGLAVSTPSAQQTQQATMSSVQPNLSKSNNATLSHGNLLEAKMPKAVSVAGNGFPSDSLFGDVFSVASVQPNQSSTPTISSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="117248" PGL_stop="117839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117248" e_stop="117341"/>
            <exon e_start="117378" e_stop="117839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.872"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="117248" e_stop="117341" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117342" i_stop="117377" i_length="36"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="117378" e_stop="117839" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117248" stop="117341"/>
              <exon start="117378" stop="117839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTGTCAACAATCTTGCTAGGCATTGTCCATTGTATGCCTCTGAGTAATGAAAATATTCCATAGTTGGTCAGTGATTCTACAATGCAAAAACA : AACAGTGTGTGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTGTCAAGACAGCTTCTTTTGCTAGCATCCATGAGAAACATGCCACCTCCAAAGGTGCTTTGGTTCTCCAAATTTGTTTCCATGGCCATATGGAGTTCTGTGCCACTGTAGAGTTGAGAAGTTTGTACCCTGAACTTACTTTGTATACCCCTTTGTTGTGCCCATTCCACCATAGTCTGTCCACCCTATTCTTCAGACCTTGAAAAGCTTCAAGGATTTTGAAGAACTCGATCAGTTTAGGAATTTCCCAATCATTCAAGTTTCTTCTAAAATTTAAGTCCCAGCCTTGGAACGCCCACATGTCAGCTATTGTTCTGTCCTGATGGATAGCTAAATCAAACGGATCAGGTAACTTCTCTGCAAGACTCCAATTACCTAACCACCTATCTTTCCAGAAGATGGTTTTGTTACCATCAC</gDNA_template>
            <first_frame> E  C  Q  Q  S  C  *  A  L  S  I  V  C  L  *  V  M  K  I  F  H  S  W  S  V  I  L  Q  C  K  N   : K  Q  C  V  T  K  I  M  F  L  F  L  R  F  S  C  V  K  T  A  S  F  A  S  I  H  E  K  H  A  T  S  K  G  A  L  V  L  Q  I  C  F  H  G  H  M  E  F  C  A  T  V  E  L  R  S  L  Y  P  E  L  T  L  Y  T  P  L  L  C  P  F  H  H  S  L  S  T  L  F  F  R  P  *  K  A  S  R  I  L  K  N  S  I  S  L  G  I  S  Q  S  F  K  F  L  L  K  F  K  S  Q  P  W  N  A  H  M  S  A  I  V  L  S  *  W  I  A  K  S  N  G  S  G  N  F  S  A  R  L  Q  L  P  N  H  L  S  F  Q  K  M  V  L  L  P  S  </first_frame>
            <second_frame>  S  V  N  N  L  A  R  H  C  P  L  Y  A  S  E  *  *  K  Y  S  I  V  G  Q  *  F  Y  N  A  K  T  :  N  S  V  *  L  R  *  C  S  S  F  L  G  F  H  V  S  R  Q  L  L  L  L  A  S  M  R  N  M  P  P  P  K  V  L  W  F  S  K  F  V  S  M  A  I  W  S  S  V  P  L  *  S  *  E  V  C  T  L  N  L  L  C  I  P  L  C  C  A  H  S  T  I  V  C  P  P  Y  S  S  D  L  E  K  L  Q  G  F  *  R  T  R  S  V  *  E  F  P  N  H  S  S  F  F  *  N  L  S  P  S  L  G  T  P  T  C  Q  L  L  F  C  P  D  G  *  L  N  Q  T  D  Q  V  T  S  L  Q  D  S  N  Y  L  T  T  Y  L  S  R  R  W  F  C  Y  H  H </second_frame>
            <third_frame>   V  S  T  I  L  L  G  I  V  H  C  M  P  L  S  N  E  N  I  P  *  L  V  S  D  S  T  M  Q  K  Q :   T  V  C  D  *  D  N  V  P  L  S  *  V  F  M  C  Q  D  S  F  F  C  *  H  P  *  E  T  C  H  L  Q  R  C  F  G  S  P  N  L  F  P  W  P  Y  G  V  L  C  H  C  R  V  E  K  F  V  P  *  T  Y  F  V  Y  P  F  V  V  P  I  P  P  *  S  V  H  P  I  L  Q  T  L  K  S  F  K  D  F  E  E  L  D  Q  F  R  N  F  P  I  I  Q  V  S  S  K  I  *  V  P  A  L  E  R  P  H  V  S  Y  C  S  V  L  M  D  S  *  I  K  R  I  R  *  L  L  C  K  T  P  I  T  *  P  P  I  F  P  E  D  G  F  V  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117293" stop="117341"/>
                    <exon start="117378" stop="117625"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMKIFHSWSVILQCKNKQCVTKIMFLFLRFSCVKTASFASIHEKHATSKGALVLQICFHGHMEFCATVELRSLYPELTLYTPLLCPFHHSLSTLFFRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="130207" PGL_stop="131984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130207" e_stop="130290"/>
            <exon e_start="130958" e_stop="131026"/>
            <exon e_start="131318" e_stop="131651"/>
            <exon e_start="131816" e_stop="131877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.991" e_score="0.976"/>
          <exon-intron don_prob="0.976" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="130207" e_stop="130290" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.991">
            <gDNA_intron_boundary i_start="130291" i_stop="130957" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130958" e_stop="131026" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.994">
            <gDNA_intron_boundary i_start="131027" i_stop="131317" i_length="291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131318" e_stop="131651" e_length="334"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="131652" i_stop="131815" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="131816" e_stop="131877" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130207" stop="130290"/>
              <exon start="130958" stop="131026"/>
              <exon start="131318" stop="131651"/>
              <exon start="131816" stop="131877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGGCTAGTGAAAACTTTGAATGAACGCTGCAAGACTTATGGGCTACGGGCCAAACCAACTACTCTGCTTGAGCTTCCATTTG : GTTGGCAACCTGGCATCCAAGAGGGGGCAGCAGACTGGGATGGAGAGTGGGATAAATTTGATGATGAAG : AATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAG : TGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGG</gDNA_template>
            <first_frame> R  G  *  *  K  L  *  M  N  A  A  R  L  M  G  Y  G  P  N  Q  L  L  C  L  S  F  H  L  :  V  G  N  L  A  S  K  R  G  Q  Q  T  G  M  E  S  G  I  N  L  M  M  K  :  N  S  H  L  *  K  S  S  I  L  T  Y  K  M  S  L  P  L  L  N  Q  N  L  H  W  F  G  R  K  H  L  L  *  M  T  M  I  L  E  N  H  L  L  M  L  A  L  M  Q  S  Q  R  S  C  Q  A  L  V  K  P  E  *  *  V  M  W  R  L  P  I  Q  Q  E  V  Q  L  I  V  Q  P  G  V  M  Q  L  R  V  Q  Q  R  N  S  K  N  H  *  I  G  R  T  V  L  L  M  V  L  P  M  L  P  K   : V  N  T  G  E  L  N  L  R  S  L  G  T  K  V  L  M  N  L  V  G </first_frame>
            <second_frame>  G  A  S  E  N  F  E  *  T  L  Q  D  L  W  A  T  G  Q  T  N  Y  S  A  *  A  S  I  W :   L  A  T  W  H  P  R  G  G  S  R  L  G  W  R  V  G  *  I  *  *  *  R :   I  H  I  C  E  R  A  Q  S  *  R  T  K  C  H  C  P  S  *  T  K  I  F  T  G  S  G  E  S  I  F  F  E  *  P  *  Y  W  K  I  I  C  *  C  W  H  *  C  K  V  R  E  V  A  K  R  W  *  N  Q  S  D  E  *  C  G  D  Y  P  Y  S  K  K  F  N  *  *  S  N  Q  E  *  C  S  *  E  S  N  K  G  I  R  R  I  T  E  *  E  G  R  Y  F  *  W  F  S  P  C  C  P  K  :  *  T  L  G  S  *  I  C  V  L  W  G  Q  K  F  *  *  I  W  L   </second_frame>
            <third_frame>   G  L  V  K  T  L  N  E  R  C  K  T  Y  G  L  R  A  K  P  T  T  L  L  E  L  P  F   : G  W  Q  P  G  I  Q  E  G  A  A  D  W  D  G  E  W  D  K  F  D  D  E   : E  F  T  F  V  K  E  L  N  L  D  V  Q  N  V  I  A  P  P  K  P  K  S  S  L  V  R  E  K  A  S  S  L  N  D  H  D  T  G  K  S  S  A  D  A  G  T  D  A  K  S  E  K  L  P  S  A  G  K  T  R  V  M  S  D  V  E  T  T  H  T  A  R  S  S  T  N  S  P  T  R  S  N  A  V  E  S  P  T  K  E  F  E  E  S  L  N  R  K  D  G  T  F  D  G  S  P  H  A  A  Q  S :   E  H  W  G  A  E  S  A  F  S  G  D  K  S  F  D  E  S  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130209" stop="130290"/>
                    <exon start="130958" stop="131026"/>
                    <exon start="131318" stop="131651"/>
                    <exon start="131816" stop="131876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLVKTLNERCKTYGLRAKPTTLLELPFGWQPGIQEGAADWDGEWDKFDDEEFTFVKELNLDVQNVIAPPKPKSSLVREKASSLNDHDTGKSSADAGTDAKSEKLPSAGKTRVMSDVETTHTARSSTNSPTRSNAVESPTKEFEESLNRKDGTFDGSPHAAQSEHWGAESAFSGDKSFDESGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="131118" e_stop="131651"/>
            <exon e_start="131816" e_stop="131984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.991"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="131118" e_stop="131651" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="131652" i_stop="131815" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="131816" e_stop="131984" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131118" stop="131651"/>
              <exon start="131816" stop="131984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578223" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCAAAGTTCCTCCAGAGACCACCTGATCACTTCTGTCATTTTTAGATAAAAAAACTTAACCTTCATGGTGTCTTCAGAGATGAGTAGATGACCGAATCAACTTTTTCTCCTCCCTAAACTTTGAGCAATTCTATTATTAACTTTTTTCAAGTTTTTAATAAATTTTAACTCATTGAATTGTTGAATAATCTCCGCAGAATTCACATTTGTGAAAGAGCTCAATCTTGACGTACAAAATGTCATTGCCCCTCCTAAACCAAAATCTTCACTGGTTCGGGAGAAAGCATCTTCTTTGAATGACCATGATACTGGAAAATCATCTGCTGATGCTGGCACTGATGCAAAGTCAGAGAAGTTGCCAAGCGCTGGTAAAACCAGAGTGATGAGTGATGTGGAGACTACCCATACAGCAAGAAGTTCAACTAATAGTCCAACCAGGAGTAATGCAGTTGAGAGTCCAACAAAGGAATTCGAAGAATCACTGAATAGGAAGGACGGTACTTTTGATGGTTCTCCCCATGCTGCCCAAAG : TGAACACTGGGGAGCTGAATCTGCGTTCTCTGGGGACAAAAGTTTTGATGAATCTGGTTGGGGTACATTTGATACAGACCTTGATGCAGATGCTGCATGGAATATCAATTCTGCTGCTAAGGTAAATGGATACATCTTCATTTTAGTTACCAAAAAAAAAAAAAGGAAG</gDNA_template>
            <first_frame> R  S  K  F  L  Q  R  P  P  D  H  F  C  H  F  *  I  K  K  L  N  L  H  G  V  F  R  D  E  *  M  T  E  S  T  F  S  P  P  *  T  L  S  N  S  I  I  N  F  F  Q  V  F  N  K  F  *  L  I  E  L  L  N  N  L  R  R  I  H  I  C  E  R  A  Q  S  *  R  T  K  C  H  C  P  S  *  T  K  I  F  T  G  S  G  E  S  I  F  F  E  *  P  *  Y  W  K  I  I  C  *  C  W  H  *  C  K  V  R  E  V  A  K  R  W  *  N  Q  S  D  E  *  C  G  D  Y  P  Y  S  K  K  F  N  *  *  S  N  Q  E  *  C  S  *  E  S  N  K  G  I  R  R  I  T  E  *  E  G  R  Y  F  *  W  F  S  P  C  C  P  K  :  *  T  L  G  S  *  I  C  V  L  W  G  Q  K  F  *  *  I  W  L  G  Y  I  *  Y  R  P  *  C  R  C  C  M  E  Y  Q  F  C  C  *  G  K  W  I  H  L  H  F  S  Y  Q  K  K  K  K  E  </first_frame>
            <second_frame>  D  Q  S  S  S  R  D  H  L  I  T  S  V  I  F  R  *  K  N  L  T  F  M  V  S  S  E  M  S  R  *  P  N  Q  L  F  L  L  P  K  L  *  A  I  L  L  L  T  F  F  K  F  L  I  N  F  N  S  L  N  C  *  I  I  S  A  E  F  T  F  V  K  E  L  N  L  D  V  Q  N  V  I  A  P  P  K  P  K  S  S  L  V  R  E  K  A  S  S  L  N  D  H  D  T  G  K  S  S  A  D  A  G  T  D  A  K  S  E  K  L  P  S  A  G  K  T  R  V  M  S  D  V  E  T  T  H  T  A  R  S  S  T  N  S  P  T  R  S  N  A  V  E  S  P  T  K  E  F  E  E  S  L  N  R  K  D  G  T  F  D  G  S  P  H  A  A  Q  S :   E  H  W  G  A  E  S  A  F  S  G  D  K  S  F  D  E  S  G  W  G  T  F  D  T  D  L  D  A  D  A  A  W  N  I  N  S  A  A  K  V  N  G  Y  I  F  I  L  V  T  K  K  K  K  R  K </second_frame>
            <third_frame>   I  K  V  P  P  E  T  T  *  S  L  L  S  F  L  D  K  K  T  *  P  S  W  C  L  Q  R  *  V  D  D  R  I  N  F  F  S  S  L  N  F  E  Q  F  Y  Y  *  L  F  S  S  F  *  *  I  L  T  H  *  I  V  E  *  S  P  Q  N  S  H  L  *  K  S  S  I  L  T  Y  K  M  S  L  P  L  L  N  Q  N  L  H  W  F  G  R  K  H  L  L  *  M  T  M  I  L  E  N  H  L  L  M  L  A  L  M  Q  S  Q  R  S  C  Q  A  L  V  K  P  E  *  *  V  M  W  R  L  P  I  Q  Q  E  V  Q  L  I  V  Q  P  G  V  M  Q  L  R  V  Q  Q  R  N  S  K  N  H  *  I  G  R  T  V  L  L  M  V  L  P  M  L  P  K   : V  N  T  G  E  L  N  L  R  S  L  G  T  K  V  L  M  N  L  V  G  V  H  L  I  Q  T  L  M  Q  M  L  H  G  I  S  I  L  L  L  R  *  M  D  T  S  S  F  *  L  P  K  K  K  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0332B10.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131305" stop="131651"/>
                    <exon start="131816" stop="131984"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISAEFTFVKELNLDVQNVIAPPKPKSSLVREKASSLNDHDTGKSSADAGTDAKSEKLPSAGKTRVMSDVETTHTARSSTNSPTRSNAVESPTKEFEESLNRKDGTFDGSPHAAQSEHWGAESAFSGDKSFDESGWGTFDTDLDADAAWNINSAAKVNGYIFILVTKKKKRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 152 chains have been computed
$ 
$ memory statistics:
$ 80056 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 2052 bytes was the average size of a spliced alignment
$ 18480 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1680 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 172 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:31:54
-->
