<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:45:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583559" ref_strand="+" ref_description="SGN-U583559 Tomato 200607#2 [11 ESTs aligned] ">
      <seq>gaagaagccttcactaagccaaaagaaaatggcggtcttctctatgatgctttggcaagacctacaaagctttgattgtttaggtgtgtaaagaagacaacccatttgcccaaaaggagaataaattagcatgtgagctgaagtttctgaagaaattggcttcgcttgcctttataaccctctttcccattgtcaatttcaagatatttactacagttgtcttcttctcttcatttaatgagatatcagtgatgcctcatcagaaccagggacaaaatgggcagcagggtatgtggatgtaccaatgcatccattgtaaaaaaaacttcccttcaagccaggccatagcaggccatacaaagggtcatttcagagatggctgggttaaaggaaccccccagagcaaagtatttgtactattttctgagtatcagcaacagcagggttctatcactgactcttcaattcccgagaaacagattttttctgcagcaacttctgacactgacttagcagatgctcatcaattgcaaataggtgatgtgcagaattccagaagcctggtcgtgcggcctccatctccagcttcgtctagcagagaaccacgaatccctaggcatcatttgaggcttcgtgatctgaagatactagctaggctaagggctcgtcttaccagagaggagcaagaagtcattttgcgtcttcttgatagtgctatggaacaggcaaaacaatcaagcaagaagagcactgaggcggaggtgatccctaatagaaactcagaagcagcagccgtgattggaactactgacacagataccgatgtgtcctctgaggaatcagatgatgagtccaaaaatatgtgatcctatggttgaagcatatatgcaatagtttctgggctatttcttattagttatggttccgaagattgttcaaattattagtgaagtgttttattagatatatgaacagtataatgttgttgcttttttagatcatctaagagtagtgttgaacaaggttcttccctttatcccctctgttgaatttatgtatatgtgactgttactgaggctttgtctgtgaggccttggttgctttattaattgaagatattatgtatgttttgctattatgaaggaagccaactgttacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="8589" stop="19191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8889" g_stop="8957" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8958" i_stop="9066" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9067" g_stop="9200" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="203" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9201" i_stop="16620" i_length="7420">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16621" g_stop="16686" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="269" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16687" i_stop="17368" i_length="682">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17369" g_stop="17824" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="725" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17825" i_stop="18454" i_length="630">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18455" g_stop="18891" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="1162" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U583559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8889" e_stop="8957"/>
          <exon e_start="9067" e_stop="9200"/>
          <exon e_start="16621" e_stop="16686"/>
          <exon e_start="17369" e_stop="17824"/>
          <exon e_start="18455" e_stop="18891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGCCTTCACTAAGCCAAAAGAAAATGGCGGTCTTCTCTATGATGCTTTGGCAAGACCTACAAAGGTAACGTATCCCTAATAAAACAGCAAAAAAATGCATTTTGTTTCTGTTATGCACAATTTCAGTTCTTAGTTTTCTCACTTCCTTTGTAATTTTTTGGGTATATAAGCAGCTTTGATTGTTTAGGTGTGTAAAGAAGACAACCCATTTGCCCAAAAGGAGAATAAATTAGCATGTGAGCTGAAGTTTCTGAAGAAATTGGCTTCGCTTGCCTTTATAACCCTCTTTCCCATTGTCAATTTCAAGGTAAAAGTACTGATAATTGGACTACTAATCTACATAATTGAAGAAAAAAAGGGGAAAAATGGTTCTTTTTTTTTTTTTTTGATTGCACTGAGATATACTGCTAAATCTTTATGTAATTGAGAATCTAGATTGTTGGGTATATAAGTATTGAATGCTAGCATGAAAATTCATGTTACTGTGATTCATTACTGGGTATCCATTTGGTTTGCTATATGTGGAGATTTTACTCTTCTTTTAGAATTATACATTATTTCAAGGATGTGAGGTTCTTACTTTAATTTTCCTCATGATTTATACCTGTATAAGTTAGAGGGAAGGAACTATGTATTATTTTATACAAGATTTTTTTAGAAAAAGATTTCATTTTTTGGAAAGACAGTGGTTGCAAGCAATCTATTAGGACCTTTGACCCTTTCTGGTAGATGATCAACATTGTGTACACCAGGATGGTCTTCCAAAGAAAAAGCTCACTTTGCTAGATTGTCTACGACCTAATTGGGTTCCTGATATCAATGAGTAAAGTTGCCTTTACGTGATCCACCAGGACAAAGATATCCTTAGTAATTGGATTGAGAGTGAGATTGCTAGTTTTCTTGCTCCTCAACGTATCTACCATAATCATAGAGTCAACATCAATAGTGTCCTGCCTCAAGCCATTGTCTTTCAAATTGCCCGGCATATTTGGCTGCTATGGCTTCGGCCGCATGATGATTGTTGCACTGTATTGGGAATTCCATCTTGCAGTTAGGAAAAGTTTTATCCACTAGATACTTTGAGGTACCACATAATATGCTGCTCCGTTCTCCGTGTAGAATCTGTTCTGGTTGCAGATCTACCAGCACATCTGCTTCTTCAATAGTTGCATTTTGGGCTCCCATATATAAGCTTGAAAATGAACATCTCCAATTTTCTCTCTAGACCATTGAGATAATCTCTGTCCCAGTTCTTTGAGCTTCTGTTGTAATCTCCACGTAGGATTACCCTCAATTTCTTGATCATTCAATACTCACTATCTCTTGGAAATCAGGTTGTGTTATCTAGAAATCCAGGAATTTGAAATACTTCATTCCAGTAGTTTGCTCATTATCACATTTCAGCAGCATGGGCTTATGATCAGAGCCAGCCCTGGGCAAGTGCCTCACAGTCTTGAAGTGGTCATCAGTGTTATTAAAGCAAAAATCACAAAAATCTCAAAGGATGGTGGTGCTTCAAGTGCAAATAAAATATGGACTTAGTGAAAATAGGCGCAAAGGGAGAAAAAGATACAAGTATATCACATATATCTAGTTCAAAACTAACAATTATAAGCATGAATGACAAATATATGAGCAATGAGATTGGAAAAAATTATGATAAAGTGAAATATCAATTGTTTAGTGTCACCTCTGTAGAAGATGTGCATTGAAAAGGGTTTCAGACCAATCAGATCAATTTGAGGGGTGTACATGACCATTTCTAAGCTGATCACTGAAAGATTGAAAATGGTTATAGGGAAGCTGGTTGGGATCAAATGGCATTCTTGAAAGGAAGATGAATCATGAATGCTGCTCTTCTGGCTAATGAAATGGTCGACTCTAGGGTAAAACAGAAGAAACCATGCATCATATACTAGCTAGATATTCAATAGGCTTATGATCATGTTAATTGGAATTTCTTGCTAAAAATTTTGATAGACATGGGCTTTGGAGAGAAATGGAATTGCTGGATACAGTTTTGCATCTCGAATGTAAGGTTCTCACTCATTATAAATGGTAAACCGGTTGGATTTTTTCAATCCCATAGAGGTCTTAGACAAGGAGACCCTATGTCGCCTTTTTTGTTCCTACTTACTATGGAGGGTCTGCACCACATGTTCAAGGTAAATAGTTGGGTAAAAGGATTCAATGCTCATATAGGGAGAGGTGAAGATCTTGAAATCAAACATCTTTTTTATGCAGATGATGCTCGGGTTTTTGTGAAGCAAAAGTGGACCAATTAGACACTTAAGAGCAATCCTTACAATATTTGAGGGCATTTTCAGGACTTTATGTTAACTAGTCGAAAAGTTTTCTCTTCCCAATTTATCAGGTAGACAATTAACAAAGTCTAGCTGAGAATCTGGGATGTCAGATAGCCTCTCGGCTTACAAAGTACCTAGGATTGTCTCTGGGGGGCCATGAACAAGGAGTTGGAGGCATGGAATCGAGGTGATGGAGAGATGTGTGAAAAGGCTATCAAGATGAAATAGTCAATACTTCCACTACGGGGTAGGTTGACTGTCATCAAGTCAGTTTTAGATGGGCAACCTATCTACATAATGAGCCTATTTCCAATACCCAAGAACACTATGAAGAGAATCAACAAAATGAGAAGATCCTTCATTTGGCAAGGAACAAAGAATAGAGAGGCTACAACCTGGTGAAATGGGAGATACTCACTTTGAGCAGAAAACAATGTGGCCTTGGCATGAGAAATCTTTGCATCCAGAATAAATGCTTGCTGTAAAAATGGCTATGGAGATTTTGTACGGGAGATAGAGCCCTATGGAGAAAATTCGCAGCAGAAAAATATGGCTTGTTTAGCAAATGGACTACTGAGAAGGTGAAGGGGTCGTTTCAATGCTGTGGGTGGAAGTCCGTTAAGAAGGCTGTGGCCACAGTTTAATAACAATATCTATACTAATGTGGGAAATGGTCTGAAAACATATTTCTGAAATGAAATCTGGAAAGGGTATGATAGCCCAATGAACTTATTCCCAAACCTCTACACCCTGAGCTTACAAAGATTTGCTACTGTTGCTCAAGTATGGAGCCAACAAGAGTAGAACTTAGTGTTCAGGAGGGCTTCTGAATGGATGGGATGTGGGCGGGCTACTTGAGGTTCTTAACACCCCACCAGCCATGTCTCAAAGAAAGGATAAACGAATTTGGAAGCTACATAACATAGGAATGTCATAGTTAAATCTTGCTAAATCTTGCTACTGGTAATGAATGTTAATCAGTCGATACTAACAAGTGGCCTTGGAAGCTAGTGTGGAAGACGAGAAACCCATTAAAAGTAGCATGTTTTGCGTGGTTGGTCATAAGAAAAGTTTGCCTTACCCATGAGGCATTACAAAAAAGGGGATGCAGTTTTTTTTTTTGAAACTGAAAAGGGGGGGGGGGGATGCAGTTTTGCTCAAGATGCTTATGTGTGAGTAGAAAGCTGAAGTAAATAATCATTTGTTCATTCATGGTATAGCAGCTTCAAAATTGTGGAATATGTGGAGAGAGGTGATTAGGGCAAAATTTGAAATGGAGAAAAGGTGGATGACAAAGATGGTAACTACACCATATGAATATGGTATCTGGAGATCAGTAAGAAATCTTTGGGCTCGTTTCGTTCTAGAATCAGATTCCAGTTGGGTAATGGAATGAAGGTGTCATTTTGGGAGGACAAATGGATAGCCCAAAGAATCCTGAAACTATTATTCCCGGACTTATGTACACTGAGCTTGCAACAAATGCAACTCTGGCTGAAATGTGGACAGGACAGGGGTGGAACTTACATCTTAGGAAGAATTTAAATGATTGGGAGATGGGGAACATTGTGACCTTCCATGATACAATGGCACAATTTAGTACTCTGAGTAGGGAAGAAGACAAGGTTGTGTGGAAATCGACAGCAAAGGGGTCTTCAGTGTCAAGTCAGCTTACAAAGATCTCCATCATTCAAATTCAAATGACAGGATGGAGCTCTGGCCATGGCAGATGATAAAATCCCATACAAGGTAAACTGCTTCACATGGTTACTAGCAAAGGAAGCAGTGCTGTCACAAGAAAATATAAAGAAGAGGAAGTTCCAACTATGTTCAAGATTCTATTGTGTGAGGAACAGGCAGAGATAGTTGACCATCTCTTTCTGCATTGCAAATGGACAAATCAATTATGGAGAATATTCAGCAGCCTTAGGAAGATCACTTGGGTGAAACCAAGAAAAATAGCACAACTCCTAAATTGTTGGATCAATATAGGCAACACTACAATTAAGGAGGAGAGATGGAGGATTGTCCCAGCTTGTATATGGTGGACAGTGTGGAAAGAAAGGAATCAAAGAAGTTTTGAGGGCAAGAAGAACAATTTGCAGAATTTTAAGATGAATTGTATAGCTCTTTATTGTTTTTGGTGTAAACAGAAAGTTTTAGTACAGTCAGAAGAACTTTTTGATGTTATAGATTATTTGTGACAAAAAGAACAGATGGAGTCAGTCTAGTTTGTAATACTTTTGGAGGGGGGCTACTTTGATGTAGTATACCTGTGGATAAATAGGAAAAAAAGGTTATCATTCTCAAAAAAAAGTATACTAGGGGTTAGCTGGGTGATGCCAAGGACAACCATTGAGCTCTTTAATAGCCGGACAAGAATTGGCAGCAGAGGGAAAAGTGAAGACTGGTGGACGACTATCCCCCTGAATATTGGGGACCCTATGGTAAAAGAAAGGAATGCTAGGTGTTTTAAAGGACAAAATGATAGTTTTGATTTCTCTGAATATATGGACTCTTGTGGCGTGGTTGATATTGGGTAAACAGGTCCTAAATACAGAAGGTGCAACAACTGGACATCTAGCAAAAGGATATGGAAAAGGCTGAACAGAGTATTCATTAATAGCTTATGGGCTCAGAATTCAATCAGCGTCATCGAAGGTGCGCTAAGCACGCTTAGGCCCTGAAGCCGTCTTTGTTGGAACCATCCGTCCGTAGCTGATCATTTTTATCCGCACATTTGTTGTCATCAGCCATCCTTTTTTCCTTAGTACAATTTATCTAAGCTTGATCAGCAACTATAGCATTCTTTCCAGTAGGAACCCTCTTCTCTGCCCTCTTCTGTTCTAATTCTCTACGTTGAGTTATTGAGTGCCCCAAGATTTTGCAATTTCTACAAAATTTAGTTACTATAGGAGAGTCCTCATTGGTACTGCAATTTATTTTACGCAATTCCATCCGTGACAGTGGAATGGAGTTCCAGCAAAAGCACCCAGATAGGGACTACAGGAGATTCCTCATCTGATCTGAATGGTGGAGTGCATTTCTCTAGCCACATCACTTGACCGTCTATTTGAATAGATCGGTTATACCAAACATTTTTTAAATCTTCCTCATTGGAAAAATCTATAAACATAACGCAAAAATCGTAAACTCAAATCTTAACTTCACCTCTGATAAATTTGTGGCCTAGTCATGAATTTACCCACCAGAGTTAGTTTCACTCTTCAGCAGTAATTCCATAGTAATCGCTTGATTTGAAAATGATTGTCGGCATGCAATTGTTAGTATCATAACCAGCTTTCACTTGTGGATTCCCAAGTCGCTGGTTTCTAGGCTTGGGATAGCACTTAACGGTCGATTGAATTGCTTCAGAATGTTAGATTTCTGTGGAATTTCCTCCACAGCTAAGGTCACCATAGTAGTATCAATGTTTTTATCTACCAGTGGCGCCGTGCCAGGTCTACTGGTGTCCCATTGGACGGAGTGTGAGGCTCAATCACGAGAGAAAACAACCGTTGAGAAATAATACTCATGTATTGTATGGAAAACTTTTTCTGTTTACTTATTTTTATACGGCATAGAATGTGAAATAAGAACAAGGGTAAGTCATACATGGATAAATAAACTAAAGGTGAAGTGACCCTTATGATAGTAAAGAAACTTTTATTTTGGTTAACAAGTAACATATATTTCTCTCTCTGTCGAATACTCAGTTGACTCATACTAGTCTCATACAATAATGTTAAGTAAAGTGTTTTTTATTGATACTTCTTCAGAGCAAAAAGAAAGTTGTCTCTGTCATGAGCAGATATGGGTAAATTCATGTGGAAACAAGTTTTCATCTGTCTGGCTTGGAAAATGATAAACATTTCAGGATCTCATCTTTTCCACGATCTTGGCCAGAGGACTTGGAATTAAATTATTCTGAAGAAGCCACATAAATGATACAATTGAACCTACTTTGTCTACTTCATGATTAGACACTATCTGAACTTTTTGTGCTACAACTAGAAGAGCTAATGGAGATTCTACATAGAAACTCAGTAAAAAACAAATTTTTGGCTGAGTTGTACATTTTACAAGGCATTAGTCTTTTTTTTCTAAAAAAGTTGTTATTTTCAGTTCTCCTGAAAAATATTTTCAATCAAACACCACTAGAAAGGAGTGTTTCACTTTACTCCTCTCTAATTGTGTATGGCTCGGGTTTTTGACAAGTAATGTTGAATTTAATAATGGATTCTAACAAGGAATCAACATCATTTACATAGGGGCCAAGTGGCATCAATTAGCTAACAGAAAATACATCTAAGTTTGAGGCTATGTATATTTCTCCTTTTGCCAAACTTTTGTTCGAGTTTTTAGAAATACAAAATAAGGAAGTTCATGATTTTTTTAGCTGTTTCCAATCTGTTGATCTCAGTTTTATTTACGGAATTGGATTACCTTTCCTTCTTTGCAAAATTCACTTGTTGGATCAAAGAGAGGAAATGATCATTTAAATTTCTGTTACCGTTTACTTCTCATTGCCTTAAAAGGGAATCTGTTCTCTAATTGCCATGAGTTATACTGCTAAATCTTCTGAAAATAGAATCTACATTATTGGAAAGAAATATTAAACGCTGGCATGAAAGCTCATCTTAGTGTAATTAATCACTTGATATTATAAGTGATTAAGGATTTATGCTTAGCTTTCATCCTGGATCGACAGCTAGTATTTTATAGTTGTGCATTGTTTCACTTCTCCTTCTGTAGGATACTCAGTTGGCTCATACTTCTCATAAAATAGTGTTCAGAAGATTATTTTCAGTTGATACTTGTCTCTTCGTGACAAAAAGTATGTCACCTTTGTCATGAGTATCATGGACTCTTGTTTAAACAAGTATTTATTTGTCTGCCTTGAGAACCTAGTTCTGTCATTATTTTCCTATCCATCTTGGATGTTATTAATAATTTGAGACAATTAGTGATATAGCTGGAATATTTCTTGTAACTGTCTTATCATTTTACTAGCCATTCTTGAAGTAGGTTACCATTGGGGACCAAAGGCAACACATGTACGTGGAATATCATTTACTTCAAGGGATAATACCAAAATAAAGGAAAATAAATGGAACCTACAAAGTTTCTATTTGACTCAACCATGATTTAATACATTTTCTCCTCTTTCATGCATAATTCTGGAAGTAATCTTTGAACGTTGTCTCTTTAACTAGCAGAGTAGTTTCACCACAGTTCTTTTCCTCTCTTTTTGTTATTTTGGTCCTTCTGTTTTGTCCTCATCATTTATGTTTGATGATTCTGTTAACTGAAGCCATGTAGTATTTGATCTAAATAGATTGAAATAATTCTACCATTGCTTTAAAAATTGCAAATAAACATTTCTCTTATCCTTCACTAACCCTTGTCTGTAATCTGCAGATATTTACTACAGTTGTCTTCTTCTCTTCATTTAATGAGATATCAGTGATGCCTCATCAGAACCAGGTATGATTGTCATCAGGGAATAGAGTGAATTGTGAAACAAATAGGAAATAATGCAATACTTGGGTAGAGTTTCAGTGAATATAATATCCCTTCTCTTATAAGGTAATTAGGGAATGAAAATCCTACATATGACAAGTAAGAAGAATCATTGGAAGGAATGAACAATATATGTCACATCCTAATTCTATTCTGTGATAAGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCCTTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAAGGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAACTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGATGCAATGACTTTTTTTATGCCAACTCTGTTTTTAAAAATTACTTGGTTAGAGCTCCTTTATATGTATTCCTCTTCTTCGATTAACATGGAAGTAACAACAATACAGGGACAAAATGGGCAGCAGGGTATGTGGATGTACCAATGCATCCATTGTAAAAAAAACTTCCCTTCAAGCCAGGCCATAGCAGGCCATACAAAGGGTCATTTCAGAGATGGCTGGGTTAAAGGAACCCCCCAGAGCAAAGTATTTGTACTATTTTCTGAGTATCAGCAACAGCAGGGTTCTATCACTGACTCTTCAATTCCCGAGAAACAGATTTTTTCTGCAGCAACTTCTGACACTGACTTAGCAGATGCTCATCAATTGCAAATAGGTGATGTGCAGAATTCCAGAAGCCTGGTCGTGCGGCCTCCATCTCCAGCTTCGTCTAGCAGAGAACCACGAATCCCTAGGCATCATTTGAGGCTTCGTGATCTGAAGATACTAGCTAGGCTAAGGGCTCGTCTTACCAGAGAGGAGCAAGAAGTCATTTTGCGTCTTCTTGATAGTGCTATGGAACAGGTTCATTCATTAATTTAAATATGCACCTGCTCGATCTTTTTCCTTCCTTCATCACTCCTATAATTTTCTTAGGTGTCATTTGGTTCAAAACTAGGGATTATATCAATCCCACTTTTTTAGGAGACGAGTGATTCCAGGATTTTGGTATAGAAATAACAGTGATCTTAGGTAATACTTCCGGTCAAATACGAGATAAGTTTAACCTCAAAATTTATAATGGAAGAACCCAGTTAATCCCTTGAACCAAACAATCCCTTAACAAATTTCTTATTATATCTTACTCTAATGAATTGCCACCATCTTTATGAATTTTGGTTAATCCACCATATATTATATTTCAATAGCAGTGTTCAAGTAATTAATGTGTGGTTGGCTTTTTCACCTCCTGTACCACCAGCATGCTTGGTCCCGTTAGAAAGATTGGAATATCAATCTCATGTAGATAAACTACAAAAAACTCATGCTACAGGAGCAAAATCTTTCTCAAATTCTAGTGTTTCCACGACAACTAATCAATTTTGTTCTACCTAATTCCTCTTTCATGACTACGTATTTTTCCAGCTTAGGATGTCGGTAATCTTGTTGAATGCAAATAATTTGGTGATTGATAGGAGTATTATTTTGTTACAGGCAAAACAATCAAGCAAGAAGAGCACTGAGGCGGAGGTGATCCCTAATAGAAACTCAGAAGCAGCAGCCGTGATTGGAACTACTGACACAGATACCGATGTGTCCTCTGAGGAATCAGATGATGAGTCCAAAAATATGTGATCCTATGGTTGAAGCATATATGCAATAGTTTCTGGGCTATTTCTTATTAGTTATGGTTCCGAAGATTGTTCAAATTATTAGTGAAGTGTTTTATTAGATATATGAACAGTATAATGTTGTTGCTTTTTTAGATCATCTAAGAGTAGTGTTGAACAAGGTTCTTCCCTTTATCCCCTCTGTTGAATTTATGTATATGTGACTGTTACTGAGGCTTTGTCTGTGAGGCCTTGGTTGCTTTATTAATTGAAGATATTATGTATGTTTTGCTATTATGAAGGAAGCCAACTGTTACACTT</genome_strand>
        <mrna_strand>GAAGAAGCCTTCACTAAGCCAAAAGAAAATGGCGGTCTTCTCTATGATGCTTTGGCAAGACCTACAAAG.............................................................................................................CTTTGATTGTTTAGGTGTGTAAAGAAGACAACCCATTTGCCCAAAAGGAGAATAAATTAGCATGTGAGCTGAAGTTTCTGAAGAAATTGGCTTCGCTTGCCTTTATAACCCTCTTTCCCATTGTCAATTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTACTACAGTTGTCTTCTTCTCTTCATTTAATGAGATATCAGTGATGCCTCATCAGAACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAATGGGCAGCAGGGTATGTGGATGTACCAATGCATCCATTGTAAAAAAAACTTCCCTTCAAGCCAGGCCATAGCAGGCCATACAAAGGGTCATTTCAGAGATGGCTGGGTTAAAGGAACCCCCCAGAGCAAAGTATTTGTACTATTTTCTGAGTATCAGCAACAGCAGGGTTCTATCACTGACTCTTCAATTCCCGAGAAACAGATTTTTTCTGCAGCAACTTCTGACACTGACTTAGCAGATGCTCATCAATTGCAAATAGGTGATGTGCAGAATTCCAGAAGCCTGGTCGTGCGGCCTCCATCTCCAGCTTCGTCTAGCAGAGAACCACGAATCCCTAGGCATCATTTGAGGCTTCGTGATCTGAAGATACTAGCTAGGCTAAGGGCTCGTCTTACCAGAGAGGAGCAAGAAGTCATTTTGCGTCTTCTTGATAGTGCTATGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAACAATCAAGCAAGAAGAGCACTGAGGCGGAGGTGATCCCTAATAGAAACTCAGAAGCAGCAGCCGTGATTGGAACTACTGACACAGATACCGATGTGTCCTCTGAGGAATCAGATGATGAGTCCAAAAATATGTGATCCTATGGTTGAAGCATATATGCAATAGTTTCTGGGCTATTTCTTATTAGTTATGGTTCCGAAGATTGTTCAAATTATTAGTGAAGTGTTTTATTAGATATATGAACAGTATAATGTTGTTGCTTTTTTAGATCATCTAAGAGTAGTGTTGAACAAGGTTCTTCCCTTTATCCCCTCTGTTGAATTTATGTATATGTGACTGTTACTGAGGCTTTGTCTGTGAGGCCTTGGTTGCTTTATTAATTGAAGATATTATGTATGTTTTGCTATTATGAAGGAAGCCAACTGTTACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575636" ref_strand="+" ref_description="SGN-U575636 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gtaattagggaatgaaaatcctacatatgacaagtaagaagaatcattggaaggaatgaacaatatatgtcacatcctaattctattctgtgataaggttccctggttcataaactctaagctgactggtcatatctctctaccaagagaaaatagggaaaataccatactcttaagattctataaacccttgattggtacatatactttttaagtttgtaactctacctgctttcttaacctagtgatggagttacctaatgtgttgaacccctgaaggatcaaggaccataaatagttggaacaagtcatcattgccttttaaaagcaaatatttcaactatttatttattaggacaaaatcaattgaaaaaaagaaacttaagagttccattatttatggtcaaatagaaaaagataaaaccaaaataacggagttgcaattgtgtactccttgttgttatatctttaagatgcaatgactttttttatgccaactctgtttttaaaaattacttggttagagctcctttatatgtattcctcttcttcgattaacatggaagtaacaacaatacagggacaaaatgggcagcaaggtatgtgaatgtaccattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="16489" stop="17709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16789" g_stop="17409" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U575636" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16789" e_stop="17409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTAGGGAATGAAAATCCTACATATGACAAGTAAGAAGAATCATTGGAAGGAATGAACAATATATGTCACATCCTAATTCTATTCTGTGATAAGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCCTTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAAGGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAACTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGATGCAATGACTTTTTTTATGCCAACTCTGTTTTTAAAAATTACTTGGTTAGAGCTCCTTTATATGTATTCCTCTTCTTCGATTAACATGGAAGTAACAACAATACAGGGACAAAATGGGCAGCAGGGTATGTGGATGTACCAATGCAT</genome_strand>
        <mrna_strand>GTAATTAGGGAATGAAAATCCTACATATGACAAGTAAGAAGAATCATTGGAAGGAATGAACAATATATGTCACATCCTAATTCTATTCTGTGATAAGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCCTTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAAGGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAACTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGATGCAATGACTTTTTTTATGCCAACTCTGTTTTTAAAAATTACTTGGTTAGAGCTCCTTTATATGTATTCCTCTTCTTCGATTAACATGGAAGTAACAACAATACAGGGACAAAATGGGCAGCAAGGTATGTGAATGTACCATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="55508" stop="56505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55808" g_stop="56135" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55808" e_stop="56135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATTTCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTAATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTACGTGTCGGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581192" ref_strand="+" ref_description="SGN-U581192 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>atggcagatatgcgagaaagatagccacatctgtttacagattcaggtactccttttcgcgcttgttttccttcttgtgatcgttcgggaatgaacgatgggtaaattggtatcttttgtaatgacctgtttagttgttttgagcagcagattttatttatgcaaaaacaggttgaggcgacggaccccacgacggaccgtcatgggcacgacggaccgtcgcagggtctcgtttcaaaacacttagaaaatttgaaattgggtactgaaaatcgactctctgaactttgtaacgaaatggcaggacggaccgtcacaggtgtgacggaccgtcacacactctttggtggaaattgagtctctgaaccttctgacgacctgcaggacggaccgtcgcaggtgcgacgggccgtcacaggttgcgtaatcccagtctgggtcggatttctttatacgttttaagggacgtttttgactattccttctttaattataaagttagtgggttaatggtaatacgtctgattacttgggggttaaaagaggtaaccttaaattaattagtgggttattattgccatcttttattcttaattatatactaattagggtaaaagaaagagggtttgcataaataaaatagaaagaacaagagaaagagagagaaagttgaacgagaaagaggagaaacgaagagaaacaaagcttgggaaattgcttgcttgatcactaatcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="57652" stop="55724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57354" g_stop="56044" g_length="1311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1306" r_length="1306" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U581192" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>1311</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57354" e_stop="56044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGATATGCGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCTTTTTCGCCCTTGTTTTCCTTCTTGAGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACAACCTGTTTAGTCATTTTGAACAGCAGATTTTATTTCTGTAAAAACAGGCTGAGGCAACGGACCCCACGATGGACCGTCATAGGCACGACGGATCGTCGCAGGGTCTCGTTACAAAACACTTAGAAAATCTGAAATTGGATACTGAAAATCGACTCTCTGAACTTCGTAACGAAATGGCAGGACGGACCGTCATATGTGTGACGGACCGTCACAGACTTTTTGGTGGAAATTGAGTCTCTGAATCTTGCGACGGCCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCGCAGGTTGCGTAATCCCAGTCTGAGTCGGATTTCCTTAATTGTTTTAAGAGACGTTTTTGACTATTCCTGCTTTAATTATATAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTT-GGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCGTTTATACTTAATTATATGCTAATTAGGGTAAAATAAAGAGGATTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAGAG-T---C--G--A-ACGAGAAACGAAGAGAAACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTTCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTAATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGTCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCCCGAACCGACACGTAGATTTAGAGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCAACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACAC</genome_strand>
        <mrna_strand>ATGGCAGATATGCGAGAAAGATAGCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCGCTTGTTTTCCTTCTTGTGATCGTTCGGGAATGAACGATGGGTAAATTGGTATCTTTTGTAATGACCTGTTTAGTTGTTTTGAGCAGCAGATTTTATTTATGCAAAAACAGGTTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATTTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTAACGAAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACACACTCTTTGGTGGAAATTGAGTCTCTGAACCTTCTGACGACCTGCAGGACGGACCGTCGCAGGTGCGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTATACGTTTTAAGGGACGTTTTTGACTATTCCTTCTTTAATTATAAAGTTAGTGGGTTAATGGTAATACGTCTGATTACTTGGGGGTTAAAAGAGGTAACCTTAAATTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGG-GTTTGCATAAATAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAAAGAGGAGAAACGAAGAGAAACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAG-GTGTCACGAACCGACAC-GTAG-A-T--T---TA-G-GGGATCGGAGTGTCACGTTCCGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="57811" stop="58903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58111" g_stop="58603" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58111" e_stop="58603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAATCTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATACAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTACATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTTGGAAGACCAACCACGAAATCCATTGCAATCCTTTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGTGCCTTTGGTGTTCATACTTTACCAGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATTATGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCATGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATTAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="59072" stop="60487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59376" g_stop="60187" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59376" e_stop="60187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCAAAAACTCACACTTAGAGAACTTGGTATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCGGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCA-CCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="62352" stop="59205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62054" g_stop="61183" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61182" i_stop="60068" i_length="1115">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60067" g_stop="59505" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>1435</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62054" e_stop="61183"/>
          <exon e_start="60067" e_stop="59505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAG-AAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAATCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGATCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGGTGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTATGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACACCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTCGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTT-GGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTTGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGCTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACCGCTTTTAGAACTAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGACATACTGATATACTCTAAAAGTAAGGAGGAACATAAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATACCAAGTTCTCTAAGTGTGAGTTTTTGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="62384" stop="59596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62084" g_stop="59895" g_length="2190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>2190</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62084" e_stop="59895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAGCGGCAAGAGGCCGTGGAAGAGGTTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAG-AAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAATCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGATCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGGTGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTATGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACACCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTCGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTT-GGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTTGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="61719" stop="59685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61419" g_stop="61220" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61219" i_stop="60476" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60475" g_stop="59948" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61419" e_stop="61220"/>
          <exon e_start="60475" e_stop="59948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAG-AAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAATCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGATCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGGTGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTATGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACACCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTCGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTT-GGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592954" ref_strand="+" ref_description="SGN-U592954 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|195426549|ref|XP_002061389.1| (e_value=0) GK20893; (*SWP) sp|Q39WP5|NHAA_GEOMG (e_value=0) Na(+)/H(+) antiporter nhaA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nhaA; ">
      <seq>ggaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="59891" stop="60984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60191" g_stop="60684" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U592954" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60191" e_stop="60684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACACACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACGAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACATAAGCCATG</genome_strand>
        <mrna_strand>GGAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="60067" stop="60991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60366" g_stop="60691" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60366" e_stop="60691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACGAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACATAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="60278" stop="62383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60578" g_stop="62084" g_length="1507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>1507</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60578" e_stop="62084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACATAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCTAGTTTGCCCACCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGATCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGATTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCATAGCCGCTACCTGTAAGGCTGAAATCCACAACTCTGACCTCAACCCCTTCACAGAATGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTT-CTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTTTGTTGGTTGACACTCAACATGTGAATGCCACCACATTTTGGCGTTCCCTTGAAACTGGTAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAATAGCTCATGACAGCCAACCAGAAGATCGTAGGCATCCTCAGATTTAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAATTTCATGCTGATCATTTATCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAGTGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATATTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGTTCATTCTCCTTATCCTCCCCTTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGTGCTTGTCCTCTTCCTCTAGAGGATGTCCTCCCACAACCTCTTCCACGGCCTCTTGCCGCTACTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="62384" stop="60360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62084" g_stop="60660" g_length="1425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>1425</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62084" e_stop="60660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAGCGGCAAGAGGCCGTGGAAGAGGTTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAG-AAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAATCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGATCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGGTGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTATGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="62366" stop="61015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62066" g_stop="61315" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62066" e_stop="61315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGAAGAGGTTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAG-AAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="-" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="62320" stop="61165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62020" g_stop="61465" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62020" e_stop="61465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603806" ref_strand="+" ref_description="SGN-U603806 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147798986|emb|CAN61634.1| (e_value=1e-49) hypothetical; (*ATH) AT5G45040.1 (e_value=1e-49) | Symbol: None | cytochrome c6 (ATC6), identical to c6 type cytochrome (Arabidopsis thaliana) gi:19571824:emb:CAD27418 | chr5:18192200-18194110 REVERSE | Aliases: K21C13.23, K21C13_23; (*SWP) sp|Q93VA3|CYC6_ARATH (e_value=1e-48) Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=petJ; ">
      <seq>gctgatattggtatgtggtcatcattgccaatcttgccatctccttggattatgggcccaagatacttgaagcttcctctcttagtctcaattggacaaacaacagatgtacaaaagggagcttctttgtttaatcgagcttgcattggatgtcattatgaaggtggaaatataatccagcctggtgcgacactcttcttgaaggatctacaaagaaatggagttgacacggaagaggaaatctaccgcgtcacttacaatggcaaagggagaatgccagggtttggtcagaattgtacaccaaggggtcaatgcacttttggtcctcgattacaagacgatgaaattaaactcttagctgagtttgtgaagtctcaagctgatcaagattggcctaaaatcgaaaacagtggagattgaaaataactattagtacttcacaattgttcaaaatgtgcatatcatgtttctcagttgctttgtcttttcatctctctcgtcccattcggatgtttactaaaggcgattcagagagaaatagtcagtcatttcactagagagttacctgttgatgacatgaagggtagcttcacttgttctgtgtaaagttgaccttatttacttcccaacaatagtttctattagttttagattataacacatgctggacctgttagagcacatgctcacatgcatctgttattgtaaactttttttaatataaaaactatagtttgacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0002K14-GUpky/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0002K14.1" temp_strand="+" temp_description="C02SLe0002K14.1  AC215442.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0002K14 sequenced_by:kribb upload_account_name:korea">
        <position start="127277" stop="131407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127576" g_stop="127660" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127661" i_stop="129522" i_length="1862">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129523" g_stop="129620" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="183" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129621" i_stop="129703" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129704" g_stop="129735" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="215" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129736" i_stop="130501" i_length="766">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130502" g_stop="130565" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="279" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130566" i_stop="130644" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130645" g_stop="131107" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="742" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0002K14.1" gen_strand="+" ref_id="SGN-U603806" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0002K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127576" e_stop="127660"/>
          <exon e_start="129523" e_stop="129620"/>
          <exon e_start="129704" e_stop="129735"/>
          <exon e_start="130502" e_stop="130565"/>
          <exon e_start="130645" e_stop="131107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATATTGGTATGTGGTCATCATTGCCAATCTTGCCATCTCCTTGGATTATGGGCCCAAGATACTTGAAGCTTCCTCTCTTAGGTATGATTTGTGCCTCGATCTTCACTTTTACCTCCAGGTCATGACTGAACTTGTCACTCCAGCTAGTCTGTTTTAGTCTTGCTTAACCTAAAAATCTTTAAACTTTCGGGCATTTCTCCAAACTTTCAGCTTATCGTTAACTCAACCACGTGTCTCGTCAATTAATATTATGTCATCTGCAAATAACGTGCATCATGGCTCCTCCTCTTAAATATGTCGTGTCAATTCGTCCATTACTTAGCTAAACAGGAACAAGCTAAGGGTTGATCCTGGTGCAACCCCACTACATTCGCTAAGTGTTCGGAGTCACCTTCCACCGTCCTAACCCTGGTCTCAAATCCATCATACATGTCCTTAATTGCCCTTTTTACGTAGTTTATATATGTATGATCCTATGCAGTTACGACTATGTCTGAATGTCTAGTAGGTTTAAAGGGAACTGAGTGATAAAGTACCATTACACATGATATACCAATTTGGTAAAGGTGTTTGAAGGCAAATGATTAATCTGGAAAGAAATAATTAAGGATAAACTTGAAGGGATAGCAGATCAGCCAATTGTTGCTAGAGTTGTCAAAAAGAGGTGTAATCTGTATAATTGGTTTATTCACGTTCTAAGGAGGCGGGGGATACTTTGGTCCTTGTCTTCTTCTCTTCATTTAATGAGACATTGTTGATGCCTCATCACATTCAGGTATAGCTGTCATCAGGGAATAGAGTAAATTGTGGAACAAATGGAAAATAATGTCAATACTTGCAGAGTTGCAGCAATACTATTACCTTATAAGGTAATTTAGGAAAAGAAAATCCTATATATAACAAGGAAGAAGAAATCATTGGTATGGAATGAACAAGTAATTCATAAACTATAAGCTAGTCGGTCATATCTCTCTACCTAGGGAAAATAGGGTGAAATACCAGCAGCTCTTAAGATTCTATAAGCACTTCACTGGTGCCTATGCTCTTAAATTTGTAATTTTACCTGCTATCTTAACCTGGAGATGAAGTTAGCTAATGTGTTGAATCCCTGAAGGACCATAAATCTTTGACAGTGATGCCAAGCCTTAAAACTACAACTCAGTTTCCATCCAACTTGTATCGACTTAGCTGATTGTGCGACTCGAAATCTGTTCGCCTCATGCCATTTCTGTAGCAAGTCCCTGAATAGTAACCACTGTGTGTTCAGTTTGATCATGCAACTTACTCACATAATCCTTCTTACGTAGGAGAGGTTTAATAAACTTATCATACTCGACAAGAATTTCTGGAAACTGAGCCTACTTGAGTTGCAGAAAATCCTTTAGCATTTACCATGCTTAAGGCATACATGACATATTCCCCACTAAGCAAGGTTTTTCTTGTCATCTGTGCACTTCTAGGTTATGATAAGATATGGATCATCAGGTACAATATTCCGCTGTTTACATGTGGGTAATCTGTGATGACAGACTACCTAATGAATAGAAGTATACATAAGAACTCTTTCTTAAACCAAATATAAAGCACTCCTAGAAGTATAAAAATGTTTGAGTTGCCAAATTTCTTCCTCTTATTTTATCTATCTATGATGTCATTTAGATGATATAACTGATCTTAAAACCTTCTCCATTGAGGAATGTTGGAAAATCCCTTAACCTGTACTCATCAAGTTTACGGCGGTTGCTATTAGTAATCTGTACATTCTGGAGGTCCCTTTTGAAGGTGACTTGGTTGTATTTCCTTATTTAACATTAGTGTACTGGAAACTTACCTGATTCCACATCTGATGTAAGTTGCAAGAAGAAATTCCTTGATATTAATTTATTTGCAGTTGATATTCTTAGTTTCTTCATCTCTTTATTTTATTGTACTTCTGTTTGCAGTCTCAATTGGACAAACAACAGATGTACAAAAGGGAGCTTCTTTGTTTAATCGAGCTTGCATTGGATGTCATTATGAAGGTGGAAATATAATCCAGCCTGTGAGTCTTACCTACCTCGTGATTCCGGTAGTCGTCGAAAATTTCCAGCTCACCTTAATTATCTTTCCTTTGTTATATGCTAGGGTGCGACACTCTTCTTGAAGGATCTACAAAGGTAAAAAATTAAAATCCACAGAGAAGATTTTTGTTTTGCTTGTAACTTCTTTGAGCATGTCACAAGTTCCTTAGAACTTTCTGTATCTGAATAGAAACCAGAAGTTCAAAGAAAAGGTACTTAAGTATTTACACTCCAGTAAAAGTATTACCAGACTTGAGACGACTTTTCAGATGTTTAGTTTAATTTCATGTACGGGGAATGGTGAGTAAGTTTAAAAGATATTCACAGCAACTTGAAGTTCAGAATAATAGTCCATATGCTAGCTCCTCTGTATTTAACTATCTATACCTTTTCCTGGCTCTAAATGAAAGGCTCTTTATTGACTTAAGATGTGTTCTCTCGTTCCCTTTCGCTTCTAATACTTAGCAGATCAAATTTTCTGAACATGAGAATTTCGTTTGGCGTATTCAATTCTTGTGAGGAAAACATATAGATAGAAGGTAAACTGAATATAATTTTTTTGAACAATAGATTGTGCAGCAAACTAATTTTCCTATAACATACGCGAGCTAAGAGTAAAGCTACAGTACATTGTTTCATTGAATTGTTAATTTTATTAATCAGCATTTACATAGTTTGACAAGACCAATTCTTAACAGACAAGAGGTTATTTCATCTCAACTTTTGAGAGATTTTTATTGTCTTGCTGTCTATCATATTCTATTCATTGTCATCTTTTCGTATGCATAGTTGAGATGCAATTTGTCATATCATTATGCAAAAACAACATGGGCAACTTTTAACTAGCTACTCTTCTGTATAGAAATGGAGTTGACACGGAAGAGGAAATCTACCGCGTCACTTACAATGGCAAAGGGAGAATGCCAGTAAGTTTATATTGTTCAGAACCATGGTTGTCTTTATGCTGTTGTGTCGTACACCTTATTGTGCTGTCTGGATTTGCAGGGGTTTGGTCAGAATTGTACACCAAGGGGTCAATGCACTTTTGGTCCTCGATTACAAGACGATGAAATTAAACTCTTAGCTGAGTTTGTGAAGTCTCAAGCTGATCAAGATTGGCCTAAAATCGAAAACAGTGGAGATTGAAAATAACTATTAGTACTTCACAATTGTTCAAAATGTGCATATCATGTTTCTCAGTTGCTTTGTCTTTTCATCTCTCTCGTCCCATTCGGATGTTTACTAAAGGCGATTCAGAGAGAAATAGTCAGTCATTTCACTAGAGAGTTACCTGTTGATGACATGAAGGGTAGCTTCACTTGTTCTGTGTAAAGTTGACCTTATTTACTTCCCAACAATAGTTTCTATTAGTTTTAGATTATAACACATGCTGGACCTGTTAGAGCACATGCTCACATGCATCTGTTATTGTAAACTTTTTTTAATATAAAAACTATAGTTTGACTTT</genome_strand>
        <mrna_strand>GCTGATATTGGTATGTGGTCATCATTGCCAATCTTGCCATCTCCTTGGATTATGGGCCCAAGATACTTGAAGCTTCCTCTCTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAATTGGACAAACAACAGATGTACAAAAGGGAGCTTCTTTGTTTAATCGAGCTTGCATTGGATGTCATTATGAAGGTGGAAATATAATCCAGCCT...................................................................................GGTGCGACACTCTTCTTGAAGGATCTACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGTTGACACGGAAGAGGAAATCTACCGCGTCACTTACAATGGCAAAGGGAGAATGCCA...............................................................................GGGTTTGGTCAGAATTGTACACCAAGGGGTCAATGCACTTTTGGTCCTCGATTACAAGACGATGAAATTAAACTCTTAGCTGAGTTTGTGAAGTCTCAAGCTGATCAAGATTGGCCTAAAATCGAAAACAGTGGAGATTGAAAATAACTATTAGTACTTCACAATTGTTCAAAATGTGCATATCATGTTTCTCAGTTGCTTTGTCTTTTCATCTCTCTCGTCCCATTCGGATGTTTACTAAAGGCGATTCAGAGAGAAATAGTCAGTCATTTCACTAGAGAGTTACCTGTTGATGACATGAAGGGTAGCTTCACTTGTTCTGTGTAAAGTTGACCTTATTTACTTCCCAACAATAGTTTCTATTAGTTTTAGATTATAACACATGCTGGACCTGTTAGAGCACATGCTCACATGCATCTGTTATTGTAAACTTTTTTTAATATAAAAACTATAGTTTGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8889" PGL_stop="18891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8889" e_stop="8957"/>
            <exon e_start="9067" e_stop="9200"/>
            <exon e_start="16621" e_stop="16686"/>
            <exon e_start="17369" e_stop="17824"/>
            <exon e_start="18455" e_stop="18891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8889" e_stop="8957" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="8958" i_stop="9066" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9067" e_stop="9200" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.532">
            <gDNA_intron_boundary i_start="9201" i_stop="16620" i_length="7420"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16621" e_stop="16686" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.936">
            <gDNA_intron_boundary i_start="16687" i_stop="17368" i_length="682"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17369" e_stop="17824" e_length="456"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="17825" i_stop="18454" i_length="630"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18455" e_stop="18891" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8889" stop="8957"/>
              <exon start="9067" stop="9200"/>
              <exon start="16621" stop="16686"/>
              <exon start="17369" stop="17824"/>
              <exon start="18455" stop="18891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAGCCTTCACTAAGCCAAAAGAAAATGGCGGTCTTCTCTATGATGCTTTGGCAAGACCTACAAAG : CTTTGATTGTTTAGGTGTGTAAAGAAGACAACCCATTTGCCCAAAAGGAGAATAAATTAGCATGTGAGCTGAAGTTTCTGAAGAAATTGGCTTCGCTTGCCTTTATAACCCTCTTTCCCATTGTCAATTTCAAG : ATATTTACTACAGTTGTCTTCTTCTCTTCATTTAATGAGATATCAGTGATGCCTCATCAGAACCAG : GGACAAAATGGGCAGCAGGGTATGTGGATGTACCAATGCATCCATTGTAAAAAAAACTTCCCTTCAAGCCAGGCCATAGCAGGCCATACAAAGGGTCATTTCAGAGATGGCTGGGTTAAAGGAACCCCCCAGAGCAAAGTATTTGTACTATTTTCTGAGTATCAGCAACAGCAGGGTTCTATCACTGACTCTTCAATTCCCGAGAAACAGATTTTTTCTGCAGCAACTTCTGACACTGACTTAGCAGATGCTCATCAATTGCAAATAGGTGATGTGCAGAATTCCAGAAGCCTGGTCGTGCGGCCTCCATCTCCAGCTTCGTCTAGCAGAGAACCACGAATCCCTAGGCATCATTTGAGGCTTCGTGATCTGAAGATACTAGCTAGGCTAAGGGCTCGTCTTACCAGAGAGGAGCAAGAAGTCATTTTGCGTCTTCTTGATAGTGCTATGGAACAG : GCAAAACAATCAAGCAAGAAGAGCACTGAGGCGGAGGTGATCCCTAATAGAAACTCAGAAGCAGCAGCCGTGATTGGAACTACTGACACAGATACCGATGTGTCCTCTGAGGAATCAGATGATGAGTCCAAAAATATGTGATCCTATGGTTGAAGCATATATGCAATAGTTTCTGGGCTATTTCTTATTAGTTATGGTTCCGAAGATTGTTCAAATTATTAGTGAAGTGTTTTATTAGATATATGAACAGTATAATGTTGTTGCTTTTTTAGATCATCTAAGAGTAGTGTTGAACAAGGTTCTTCCCTTTATCCCCTCTGTTGAATTTATGTATATGTGACTGTTACTGAGGCTTTGTCTGTGAGGCCTTGGTTGCTTTATTAATTGAAGATATTATGTATGTTTTGCTATTATGAAGGAAGCCAACTGTTACACTT</gDNA_template>
            <first_frame> E  E  A  F  T  K  P  K  E  N  G  G  L  L  Y  D  A  L  A  R  P  T  K  :  L  *  L  F  R  C  V  K  K  T  T  H  L  P  K  R  R  I  N  *  H  V  S  *  S  F  *  R  N  W  L  R  L  P  L  *  P  S  F  P  L  S  I  S  R :   Y  L  L  Q  L  S  S  S  L  H  L  M  R  Y  Q  *  C  L  I  R  T  R :   D  K  M  G  S  R  V  C  G  C  T  N  A  S  I  V  K  K  T  S  L  Q  A  R  P  *  Q  A  I  Q  R  V  I  S  E  M  A  G  L  K  E  P  P  R  A  K  Y  L  Y  Y  F  L  S  I  S  N  S  R  V  L  S  L  T  L  Q  F  P  R  N  R  F  F  L  Q  Q  L  L  T  L  T  *  Q  M  L  I  N  C  K  *  V  M  C  R  I  P  E  A  W  S  C  G  L  H  L  Q  L  R  L  A  E  N  H  E  S  L  G  I  I  *  G  F  V  I  *  R  Y  *  L  G  *  G  L  V  L  P  E  R  S  K  K  S  F  C  V  F  L  I  V  L  W  N  R :   Q  N  N  Q  A  R  R  A  L  R  R  R  *  S  L  I  E  T  Q  K  Q  Q  P  *  L  E  L  L  T  Q  I  P  M  C  P  L  R  N  Q  M  M  S  P  K  I  C  D  P  M  V  E  A  Y  M  Q  *  F  L  G  Y  F  L  L  V  M  V  P  K  I  V  Q  I  I  S  E  V  F  Y  *  I  Y  E  Q  Y  N  V  V  A  F  L  D  H  L  R  V  V  L  N  K  V  L  P  F  I  P  S  V  E  F  M  Y  M  *  L  L  L  R  L  C  L  *  G  L  G  C  F  I  N  *  R  Y  Y  V  C  F  A  I  M  K  E  A  N  C  Y  T  </first_frame>
            <second_frame>  K  K  P  S  L  S  Q  K  K  M  A  V  F  S  M  M  L  W  Q  D  L  Q  S :   F  D  C  L  G  V  *  R  R  Q  P  I  C  P  K  G  E  *  I  S  M  *  A  E  V  S  E  E  I  G  F  A  C  L  Y  N  P  L  S  H  C  Q  F  Q   : D  I  Y  Y  S  C  L  L  L  F  I  *  *  D  I  S  D  A  S  S  E  P   : G  T  K  W  A  A  G  Y  V  D  V  P  M  H  P  L  *  K  K  L  P  F  K  P  G  H  S  R  P  Y  K  G  S  F  Q  R  W  L  G  *  R  N  P  P  E  Q  S  I  C  T  I  F  *  V  S  A  T  A  G  F  Y  H  *  L  F  N  S  R  E  T  D  F  F  C  S  N  F  *  H  *  L  S  R  C  S  S  I  A  N  R  *  C  A  E  F  Q  K  P  G  R  A  A  S  I  S  S  F  V  *  Q  R  T  T  N  P  *  A  S  F  E  A  S  *  S  E  D  T  S  *  A  K  G  S  S  Y  Q  R  G  A  R  S  H  F  A  S  S  *  *  C  Y  G  T   : G  K  T  I  K  Q  E  E  H  *  G  G  G  D  P  *  *  K  L  R  S  S  S  R  D  W  N  Y  *  H  R  Y  R  C  V  L  *  G  I  R  *  *  V  Q  K  Y  V  I  L  W  L  K  H  I  C  N  S  F  W  A  I  S  Y  *  L  W  F  R  R  L  F  K  L  L  V  K  C  F  I  R  Y  M  N  S  I  M  L  L  L  F  *  I  I  *  E  *  C  *  T  R  F  F  P  L  S  P  L  L  N  L  C  I  C  D  C  Y  *  G  F  V  C  E  A  L  V  A  L  L  I  E  D  I  M  Y  V  L  L  L  *  R  K  P  T  V  T  L </second_frame>
            <third_frame>   R  S  L  H  *  A  K  R  K  W  R  S  S  L  *  C  F  G  K  T  Y  K   : A  L  I  V  *  V  C  K  E  D  N  P  F  A  Q  K  E  N  K  L  A  C  E  L  K  F  L  K  K  L  A  S  L  A  F  I  T  L  F  P  I  V  N  F  K  :  I  F  T  T  V  V  F  F  S  S  F  N  E  I  S  V  M  P  H  Q  N  Q  :  G  Q  N  G  Q  Q  G  M  W  M  Y  Q  C  I  H  C  K  K  N  F  P  S  S  Q  A  I  A  G  H  T  K  G  H  F  R  D  G  W  V  K  G  T  P  Q  S  K  V  F  V  L  F  S  E  Y  Q  Q  Q  Q  G  S  I  T  D  S  S  I  P  E  K  Q  I  F  S  A  A  T  S  D  T  D  L  A  D  A  H  Q  L  Q  I  G  D  V  Q  N  S  R  S  L  V  V  R  P  P  S  P  A  S  S  S  R  E  P  R  I  P  R  H  H  L  R  L  R  D  L  K  I  L  A  R  L  R  A  R  L  T  R  E  E  Q  E  V  I  L  R  L  L  D  S  A  M  E  Q  :  A  K  Q  S  S  K  K  S  T  E  A  E  V  I  P  N  R  N  S  E  A  A  A  V  I  G  T  T  D  T  D  T  D  V  S  S  E  E  S  D  D  E  S  K  N  M  *  S  Y  G  *  S  I  Y  A  I  V  S  G  L  F  L  I  S  Y  G  S  E  D  C  S  N  Y  *  *  S  V  L  L  D  I  *  T  V  *  C  C  C  F  F  R  S  S  K  S  S  V  E  Q  G  S  S  L  Y  P  L  C  *  I  Y  V  Y  V  T  V  T  E  A  L  S  V  R  P  W  L  L  Y  *  L  K  I  L  C  M  F  C  Y  Y  E  G  S  Q  L  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9081" stop="9200"/>
                    <exon start="16621" stop="16686"/>
                    <exon start="17369" stop="17824"/>
                    <exon start="18455" stop="18595"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCKEDNPFAQKENKLACELKFLKKLASLAFITLFPIVNFKIFTTVVFFSSFNEISVMPHQNQGQNGQQGMWMYQCIHCKKNFPSSQAIAGHTKGHFRDGWVKGTPQSKVFVLFSEYQQQQGSITDSSIPEKQIFSAATSDTDLADAHQLQIGDVQNSRSLVVRPPSPASSSREPRIPRHHLRLRDLKILARLRARLTREEQEVILRLLDSAMEQAKQSSKKSTEAEVIPNRNSEAAAVIGTTDTDTDVSSEESDDESKNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16789" e_stop="17409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="16789" e_stop="17409" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16789" stop="17409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATTAGGGAATGAAAATCCTACATATGACAAGTAAGAAGAATCATTGGAAGGAATGAACAATATATGTCACATCCTAATTCTATTCTGTGATAAGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCCTTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAAGGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAACTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGATGCAATGACTTTTTTTATGCCAACTCTGTTTTTAAAAATTACTTGGTTAGAGCTCCTTTATATGTATTCCTCTTCTTCGATTAACATGGAAGTAACAACAATACAGGGACAAAATGGGCAGCAGGGTATGTGGATGTACCAATGCAT</gDNA_template>
            <first_frame> V  I  R  E  *  K  S  Y  I  *  Q  V  R  R  I  I  G  R  N  E  Q  Y  M  S  H  P  N  S  I  L  *  *  G  S  L  V  H  K  L  *  A  D  W  S  Y  L  S  T  K  R  K  *  G  K  Y  H  T  L  K  I  L  *  T  L  D  W  Y  I  Y  F  L  S  L  *  L  Y  L  L  S  *  P  S  D  G  V  T  *  C  V  E  P  L  K  D  Q  G  P  *  I  V  G  T  S  H  H  C  L  L  K  A  N  I  S  T  I  Y  L  L  G  Q  N  Q  L  K  K  R  N  L  R  V  P  L  F  M  V  K  *  K  K  I  K  P  K  *  R  S  C  N  C  V  L  L  V  V  I  S  L  R  C  N  D  F  F  Y  A  N  S  V  F  K  N  Y  L  V  R  A  P  L  Y  V  F  L  F  F  D  *  H  G  S  N  N  N  T  G  T  K  W  A  A  G  Y  V  D  V  P  M  H </first_frame>
            <second_frame>  *  L  G  N  E  N  P  T  Y  D  K  *  E  E  S  L  E  G  M  N  N  I  C  H  I  L  I  L  F  C  D  K  V  P  W  F  I  N  S  K  L  T  G  H  I  S  L  P  R  E  N  R  E  N  T  I  L  L  R  F  Y  K  P  L  I  G  T  Y  T  F  *  V  C  N  S  T  C  F  L  N  L  V  M  E  L  P  N  V  L  N  P  *  R  I  K  D  H  K  *  L  E  Q  V  I  I  A  F  *  K  Q  I  F  Q  L  F  I  Y  *  D  K  I  N  *  K  K  E  T  *  E  F  H  Y  L  W  S  N  R  K  R  *  N  Q  N  N  G  V  A  I  V  Y  S  L  L  L  Y  L  *  D  A  M  T  F  F  M  P  T  L  F  L  K  I  T  W  L  E  L  L  Y  M  Y  S  S  S  S  I  N  M  E  V  T  T  I  Q  G  Q  N  G  Q  Q  G  M  W  M  Y  Q  C   </second_frame>
            <third_frame>   N  *  G  M  K  I  L  H  M  T  S  K  K  N  H  W  K  E  *  T  I  Y  V  T  S  *  F  Y  S  V  I  R  F  P  G  S  *  T  L  S  *  L  V  I  S  L  Y  Q  E  K  I  G  K  I  P  Y  S  *  D  S  I  N  P  *  L  V  H  I  L  F  K  F  V  T  L  P  A  F  L  T  *  *  W  S  Y  L  M  C  *  T  P  E  G  S  R  T  I  N  S  W  N  K  S  S  L  P  F  K  S  K  Y  F  N  Y  L  F  I  R  T  K  S  I  E  K  K  K  L  K  S  S  I  I  Y  G  Q  I  E  K  D  K  T  K  I  T  E  L  Q  L  C  T  P  C  C  Y  I  F  K  M  Q  *  L  F  L  C  Q  L  C  F  *  K  L  L  G  *  S  S  F  I  C  I  P  L  L  R  L  T  W  K  *  Q  Q  Y  R  D  K  M  G  S  R  V  C  G  C  T  N  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17058" stop="17270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPEGSRTINSWNKSSLPFKSKYFNYLFIRTKSIEKKKLKSSIIYGQIEKDKTKITELQLCTPCCYIFKMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="55808" PGL_stop="56135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55808" e_stop="56135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="55808" e_stop="56135" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55808" stop="56135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATTTCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTAATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTACGTGTCGGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  F  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  N  *  I  E  Y  I  T  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  S  L  V  S  V  R  D  T  P  L  P  *  I  Y  V  S  V  </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  L  I  R  L  S  I  L  P  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  F  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  *  L  D  *  V  Y  Y  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  F  S  C  V  G  T  *  H  S  A  P  L  N  L  R  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0002K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="57354" PGL_stop="56044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57354" e_stop="56044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="57354" e_stop="56044" e_length="1311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57354" stop="56044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGCAGATATGCGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCTTTTTCGCCCTTGTTTTCCTTCTTGAGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACAACCTGTTTAGTCATTTTGAACAGCAGATTTTATTTCTGTAAAAACAGGCTGAGGCAACGGACCCCACGATGGACCGTCATAGGCACGACGGATCGTCGCAGGGTCTCGTTACAAAACACTTAGAAAATCTGAAATTGGATACTGAAAATCGACTCTCTGAACTTCGTAACGAAATGGCAGGACGGACCGTCATATGTGTGACGGACCGTCACAGACTTTTTGGTGGAAATTGAGTCTCTGAATCTTGCGACGGCCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCGCAGGTTGCGTAATCCCAGTCTGAGTCGGATTTCCTTAATTGTTTTAAGAGACGTTTTTGACTATTCCTGCTTTAATTATATAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCGTTTATACTTAATTATATGCTAATTAGGGTAAAATAAAGAGGATTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAGAGTCGAACGAGAAACGAAGAGAAACAAAGCTTGGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTTCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTAATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGTCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCCCGAACCGACACGTAGATTTAGAGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCAACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACAC</gDNA_template>
            <first_frame> E  A  D  M  R  E  R  Y  P  H  L  F  T  D  S  G  T  L  F  R  P  C  F  P  S  *  D  R  S  G  T  N  D  G  *  I  G  I  Y  C  N  N  L  F  S  H  F  E  Q  Q  I  L  F  L  *  K  Q  A  E  A  T  D  P  T  M  D  R  H  R  H  D  G  S  S  Q  G  L  V  T  K  H  L  E  N  L  K  L  D  T  E  N  R  L  S  E  L  R  N  E  M  A  G  R  T  V  I  C  V  T  D  R  H  R  L  F  G  G  N  *  V  S  E  S  C  D  G  L  Q  D  G  P  S  Q  A  R  R  A  V  A  G  C  V  I  P  V  *  V  G  F  P  *  L  F  *  E  T  F  L  T  I  P  A  L  I  I  *  L  V  G  *  C  *  *  V  *  L  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  *  R  G  F  *  I  K  K  I  E  R  T  R  E  R  E  R  E  S  N  E  K  R  R  E  T  K  L  G  K  L  L  A  *  S  L  I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  S  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  S  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  P  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  H  K  P  T  R  R  F  R  G  S  G  V  T  N  Q  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  S  G  V  S  R  T  D  T  R  E  L  M  N  M  R  E  R  S  V  T  Y  R  H </first_frame>
            <second_frame>  R  Q  I  C  E  K  D  T  H  I  C  L  Q  I  Q  V  L  F  F  A  L  V  F  L  L  E  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  I  L  N  S  R  F  Y  F  C  K  N  R  L  R  Q  R  T  P  R  W  T  V  I  G  T  T  D  R  R  R  V  S  L  Q  N  T  *  K  I  *  N  W  I  L  K  I  D  S  L  N  F  V  T  K  W  Q  D  G  P  S  Y  V  *  R  T  V  T  D  F  L  V  E  I  E  S  L  N  L  A  T  A  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  *  S  Q  S  E  S  D  F  L  N  C  F  K  R  R  F  *  L  F  L  L  *  L  Y  S  *  W  V  N  V  N  K  S  N  Y  L  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  R  L  Y  L  I  I  C  *  L  G  *  N  K  E  D  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  R  T  R  N  E  E  K  Q  S  L  G  N  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  N  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  I  M  R  P  W  Y  K  R  S  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  P  N  R  H  V  D  L  E  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  K  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  N  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  A  E  C  H  V  P  T  Q  E  N  *  *  I  *  G  S  G  V  S  R  T  D   </second_frame>
            <third_frame>   G  R  Y  A  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  L  R  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  Q  P  V  *  S  F  *  T  A  D  F  I  S  V  K  T  G  *  G  N  G  P  H  D  G  P  S  *  A  R  R  I  V  A  G  S  R  Y  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  M  C  D  G  P  S  Q  T  F  W  W  K  L  S  L  *  I  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  R  R  L  R  N  P  S  L  S  R  I  S  L  I  V  L  R  D  V  F  D  Y  S  C  F  N  Y  I  V  S  G  L  M  L  I  S  L  I  T  W  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  V  Y  T  *  L  Y  A  N  *  G  K  I  K  R  I  L  N  K  E  N  R  K  N  K  R  K  R  E  R  V  E  R  E  T  K  R  N  K  A  W  E  I  A  C  L  I  T  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  F  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  V  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  E  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57353" stop="57108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQICEKDTHICLQIQVLFFALVFLLEIVRGRTMGKLVSIVTTCLVILNSRFYFCKNRLRQRTPRWTVIGTTDRRRVSLQNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="58111" PGL_stop="58603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58111" e_stop="58603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="58111" e_stop="58603" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58111" stop="58603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAATCTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATACAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTACATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTTGGAAGACCAACCACGAAATCCATTGCAATCCTTTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGTGCCTTTGGTGTTCATACTTTACCAGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATTATGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCATGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATTAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  N  L  R  S  K  L  R  T  S  I  *  Y  N  G  E  W  N  P  I  Q  S  H  H  F  R  D  V  K  F  G  *  L  F  Y  I  V  S  H  L  D  R  N  E  V  S  R  L  S  *  P  I  N  N  Y  P  N  R  I  K  L  S  Q  C  L  W  K  T  N  H  E  I  H  C  N  P  F  P  L  P  F  R  N  G  H  S  L  K  C  S  S  V  P  L  V  F  I  L  Y  Q  L  T  V  W  T  F  G  N  K  I  H  N  I  M  L  H  S  T  P  P  K  V  L  L  *  V  M  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  *  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  I  L  E  V  N  C  V  P  L  S  D  I  M  E  S  G  T  P  Y  N  R  T  T  S  E  M  *  S  L  A  N  F  S  T  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  N  F  P  N  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  C  L  W  C  S  Y  F  T  S  *  Q  F  G  H  L  A  I  K  S  T  I  L  C  F  I  L  L  H  Q  K  C  C  F  R  S  W  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  S  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  P  H  T  I  A  P  L  P  R  C  K  V  W  L  T  F  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  T  Y  Q  Q  L  P  K  *  N  Q  T  F  P  M  S  L  E  D  Q  P  R  N  P  L  Q  S  F  P  T  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  P  V  D  S  L  D  I  W  Q  *  N  P  Q  Y  Y  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  P  D  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  *  L  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58285" stop="58509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNYPNRIKLSQCLWKTNHEIHCNPFPLPFRNGHSLKCSSVPLVFILYQLTVWTFGNKIHNIMLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59376" PGL_stop="60187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59376" e_stop="60187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="59376" e_stop="60187" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59376" stop="60187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCAAAAACTCACACTTAGAGAACTTGGTATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTTATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTAGTTCTAAAAGCGGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  Y  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  Y  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  *  F  *  K  R  S  L  A  H  P  L  P  V  F  S  I  D  D  S  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  K  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  I  E  V  N  I  P  I  W  W  H  T  R  K  I   </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  Q  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  S  S  K  S  G  L  W  H  I  R  C  P  Y  F  Q  L  M  I  A  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  *  K  S  I  S  L  S  G  G  I  P  G  R  S  </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  K  N  S  H  L  E  N  L  V  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  L  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  Q  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59542" stop="59880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPSSKSGLWHIRCPYFQLMIAGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59859" stop="60071"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRHKHLVTDRTSHQCKEEDTCSLWLPCSTAGSLCTSENSHPSSLQTKPEHPRRCTWSNEAFAQQLLKLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="62084" PGL_stop="59505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62084" e_stop="59895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="62084" e_stop="59895" e_length="2190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62084" stop="59895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62084" stop="60660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62066" stop="61315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62020" stop="61465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTAGCGGCAAGAGGCCGTGGAAGAGGTTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAATCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGATCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGGTGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTATGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACACCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTCGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTTGCATTGATG</gDNA_template>
            <first_frame> K  S  S  G  K  R  P  W  K  R  L  W  E  D  I  L  *  R  K  R  T  S  T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  *  G  E  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  I  C  G  Y  C  G  S  P  H  G  C  L  T  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  N  F  *  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  R  S  S  G  W  L  S  *  A  I  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  P  V  S  R  E  R  Q  N  V  V  A  F  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  E  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  S  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  A  M  A  K  S  F  Q  E  V  V  D  F  V  V  E  V  E  G  V  K  P  D  E  F  T  M  A  S  T  S  K  R  F  R  K  G  G  E  F  N  G  S  Y  S  R  G  Q  G  S  G  G  Y  S  V  R  P  I  Q  S  S  L  Q  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  D  S  R  E  C  Y  G  C  G  E  T  G  H  I  R  R  N  C  P  K  Q  S  Y  R  S  P  M  A  R  G  R  G  G  H  G  R  G  R  Y  S  G  G  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  G  G  Q  T  R  A  T  T  S  Q  H  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  Y  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M </first_frame>
            <second_frame>  R  V  A  A  R  G  R  G  R  G  C  G  R  T  S  S  R  G  R  G  Q  A  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  K  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  Y  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  I  N  D  Q  H  E  I  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  K  S  E  D  A  Y  D  L  L  V  G  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  H  S  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  W  Q  N  P  S  K  K  W  *  I  S  W  *  R  W  K  E  *  S  Q  M  N  S  P  W  H  R  H  Q  R  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  R  V  P  E  V  T  Q  F  D  P  F  N  L  H  Y  R  L  *  L  G  V  H  L  R  P  V  N  T  S  L  R  D  L  C  L  T  P  E  S  V  M  D  V  G  R  L  D  I  L  G  G  I  V  Q  N  R  V  I  D  P  Q  W  L  E  V  E  V  V  M  V  E  A  V  I  L  E  D  V  V  V  E  V  M  V  V  T  K  M  A  E  V  V  G  K  L  E  P  L  H  H  N  M  V  G  A  M  D  R  Q  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  M  Y  C  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  F  L  H  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  S  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  K  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L  P  A  V  E  Q  G  N  H  K  E  Q  V  S  S  S  L  H  *   </second_frame>
            <third_frame>   E  *  R  Q  E  A  V  E  E  V  V  G  G  H  P  L  E  E  E  D  K  H  L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  I  R  R  M  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  *  M  I  S  M  K  F  L  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  A  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  T  S  F  K  G  T  P  K  C  G  G  I  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  R  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  V  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R  S  G  R  F  R  G  R  G  G  R  S  E  A  R  *  I  H  H  G  I  D  I  K  E  V  S  K  G  R  *  V  *  W  F  L  L  *  R  T  G  F  R  R  L  L  S  S  T  H  S  I  F  T  T  D  C  S  W  G  S  T  S  D  R  S  T  L  L  *  E  T  Y  A  *  L  Q  R  V  L  W  M  W  G  D  W  T  Y  *  E  E  L  S  K  T  E  L  *  I  P  N  G  *  R  *  R  W  S  W  *  R  P  L  F  W  R  T  W  W  S  R  *  W  W  S  P  K  W  P  R  W  W  A  N  *  S  H  Y  I  T  T  W  *  G  Q  W  T  D  K  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  L  C  I  V  *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  T  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  E  L  R  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  R  *  L  H  F  Q  S  G  V  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  C  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61406" stop="59988"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLEPREGRMSVNAYEAKFRALSRYATQLCFSPQERIRHSVKGLRSELWISALQVAAMAKSFQEVVDFVVEVEGVKPDEFTMASTSKRFRKGGEFNGSYSRGQGSGGYSVRPIQSSLQTVVGGPPQTGQHFSERPMLDSRECYGCGETGHIRRNCPKQSYRSPMARGRGGHGRGRYSGGRGGRGNGGHQNGRGGGQTRATTSQHGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMAYVLFDPGSTFSYVSSSFANGLNLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVCIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFYIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWVLRFCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62066" e_stop="61220"/>
            <exon e_start="60475" e_stop="59948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.900"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="62066" e_stop="61220" e_length="847"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61219" i_stop="60476" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="60475" e_stop="59948" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62066" stop="61315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62020" stop="61465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61419" stop="61220"/>
              <exon start="60475" stop="59948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGAAGAGGTTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCG</gDNA_template>
            <first_frame> P  W  K  R  L  W  E  D  I  L  *  R  K  R  T  S  T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  *  G  E  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  I  C  G  Y  C  G  S  P  H  G  C  L  T  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  N  F  *  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  R  S  S  G  W  L  S  *  A  I  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  P  V  S  R  E  R  Q  N  V  V  A  F  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  E  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  S  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  A  M  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  </first_frame>
            <second_frame>  R  G  R  G  C  G  R  T  S  S  R  G  R  G  Q  A  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  K  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  Y  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  I  N  D  Q  H  E  I  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  K  S  E  D  A  Y  D  L  L  V  G  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  H  S  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  W  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  K  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L  P </second_frame>
            <third_frame>   V  E  E  V  V  G  G  H  P  L  E  E  E  D  K  H  L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  I  R  R  M  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  *  M  I  S  M  K  F  L  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  A  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  T  S  F  K  G  T  P  K  C  G  G  I  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  R  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  V  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  R  *  L  H  F  Q  S  G  V  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62065" stop="61286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGCGRTSSRGRGQAPSPSGTRAVTPPPTEEVVREGEDKENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQYAATVAPRMDASLEIGTFPRLTTGPIMINDQHEIFSKFLKLKPPVFKGAKSEDAYDLLVGCHELLHKMGIVERFGVEFVTYQFQGNAKMWWHSHVECQPTKAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEKVGCRSMHMRLSFVHYPDMPLNFVSVHKSGFVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60277" stop="60077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSWHISRMTLPKYLRLSRFRWSVSFWMCSLQIFLVCHQIGILTSILILNPVLAPFLYPLIEWLPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62066" e_stop="61183"/>
            <exon e_start="60067" e_stop="59505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="62066" e_stop="61183" e_length="884"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61182" i_stop="60068" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="60067" e_stop="59505" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62066" stop="61315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62054" stop="61183"/>
              <exon start="60067" stop="59505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62020" stop="61465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGAAGAGGTTGTGGGAGGACATCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATAAGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAATATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGATAAATGATCAGCATGAAATTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTAAATCTGAGGATGCCTACGATCTTCTGGTTGGCTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTACCAGTTTCAAGGGAACGCCAAAATGTGGTGGCATTCACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTCTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAA : AAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTTGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGCTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACCGCTTTTAGAACTAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGACATACTGATATACTCTAAAAGTAAGGAGGAACATAAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATACCAAGTTCTCTAAGTGTGAGTTTTTGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  K  R  L  W  E  D  I  L  *  R  K  R  T  S  T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  *  G  E  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  I  C  G  Y  C  G  S  P  H  G  C  L  T  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  N  F  *  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  R  S  S  G  W  L  S  *  A  I  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  P  V  S  R  E  R  Q  N  V  V  A  F  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  E  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  S  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  A  M  A  K  S  F  Q  E  V  V  D  F  V  V  E  V  E  G  V  K :   S  T  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  C  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  I  Y  S  K  S  K  E  E  H  K  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  T  K  F  S  K  C  E  F  L  L  D  A  V  S  F  L  G  H  V  V  S  </first_frame>
            <second_frame>  R  G  R  G  C  G  R  T  S  S  R  G  R  G  Q  A  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  K  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  Y  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  I  N  D  Q  H  E  I  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  K  S  E  D  A  Y  D  L  L  V  G  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  H  S  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  W  Q  N  P  S  K  K  W  *  I  S  W  *  R  W  K  E  *   : K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  A  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  P  L  L  E  L  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  V  *  *  T  G  F  L  S  H  I  W  I  S  L  *  S  Y  L  L  M  T  Y  *  Y  T  L  K  V  R  R  N  I  R  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  I  P  S  S  L  S  V  S  F  C  *  M  Q  C  P  S  W  G  T  W  F  L </second_frame>
            <third_frame>   V  E  E  V  V  G  G  H  P  L  E  E  E  D  K  H  L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  I  R  R  M  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  *  M  I  S  M  K  F  L  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  A  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  T  S  F  K  G  T  P  K  C  G  G  I  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  R  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  V  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R  S  G  R  F  R  G  R  G  G  R  S  E  :  K  H  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L  P  A  V  E  Q  G  N  H  K  E  Q  V  S  S  S  L  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  R  F  *  N  *  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  H  E  F  D  E  R  D  F  *  A  I  F  G  S  L  C  D  R  I  Y  *  *  H  T  D  I  L  *  K  *  G  G  T  *  G  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  Y  Q  V  L  *  V  *  V  F  A  R  C  S  V  L  L  G  A  R  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62065" stop="61286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGCGRTSSRGRGQAPSPSGTRAVTPPPTEEVVREGEDKENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQYAATVAPRMDASLEIGTFPRLTTGPIMINDQHEIFSKFLKLKPPVFKGAKSEDAYDLLVGCHELLHKMGIVERFGVEFVTYQFQGNAKMWWHSHVECQPTKAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEKVGCRSMHMRLSFVHYPDMPLNFVSVHKSGFVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60027" stop="59506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKCISLGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPCIDDLFDQLQGACVFSKIDLRSGYHQLKIRATDVPKTAFRTRYGHYEFVVMSFGLTNAPAAFMSLMNGIFKPYLDLFVIVFIDDILIYSKSKEEHKEHLRMVLEMLREKKLYTKFSKCEFLLDAVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60191" PGL_stop="62084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60191" e_stop="62084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="60191" e_stop="62084" e_length="1894"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60191" stop="60684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60366" stop="60691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60578" stop="62084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACACACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACGAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACATAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCTAGTTTGCCCACCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGATCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGATTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCATAGCCGCTACCTGTAAGGCTGAAATCCACAACTCTGACCTCAACCCCTTCACAGAATGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTTTGTTGGTTGACACTCAACATGTGAATGCCACCACATTTTGGCGTTCCCTTGAAACTGGTAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAATAGCTCATGACAGCCAACCAGAAGATCGTAGGCATCCTCAGATTTAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAATTTCATGCTGATCATTTATCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAGTGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATATTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGTTCATTCTCCTTATCCTCCCCTTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGTGCTTGTCCTCTTCCTCTAGAGGATGTCCTCCCACAACCTCTTCCACGGCCTCTTGCCGCTACTCTT</gDNA_template>
            <first_frame> G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  T  P  D  W  K  C  S  H  L  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  R  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  V  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  H  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  *  F  A  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  I  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  I  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  T  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  M  P  P  H  F  G  V  P  L  K  L  V  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  A  N  Q  K  I  V  G  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  K  N  F  M  L  I  I  Y  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  I  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  L  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  T  R  W  A  R  C  L  S  S  S  S  R  G  C  P  P  T  T  S  S  T  A  S  C  R  Y  S  </first_frame>
            <second_frame>  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  F  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  E  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  C  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  I  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  T  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  H  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  R  M  T  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  F  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  F  V  G  *  H  S  T  C  E  C  H  H  I  L  A  F  P  *  N  W  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  N  S  S  *  Q  P  T  R  R  S  *  A  S  S  D  L  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  I  S  C  *  S  F  I  I  I  G  P  V  V  R  R  G  N  V  P  I  S  S  E  A  S  M  R  G  A  T  V  A  A  Y  C  T  S  G  T  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  L  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  P  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  Q  P  L  P  R  P  L  A  A  T  L </second_frame>
            <third_frame>   N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  H  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  *  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  L  V  C  P  P  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  D  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  I  A  A  T  C  K  A  E  I  H  N  S  D  L  N  P  F  T  E  *  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  S  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  N  A  T  T  F  W  R  S  L  E  T  G  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  I  A  H  D  S  Q  P  E  D  R  R  H  P  Q  I  *  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  F  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  M  C  L  F  P  V  R  H  P  C  G  E  P  Q  *  P  H  I  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  S  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  S  P  Y  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  M  S  S  H  N  L  F  H  G  L  L  P  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60807" stop="61061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPTTSAILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTIPPNMSSLPTSITLSGVKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61862" stop="62083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISKNLIDHLWGRLGWQFLILHLFILLILPFSYYFLSRWRSHRPSTRWARCLSSSSRGCPPTTSSTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61887" stop="62084"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNSSFCTCSFSLSSPSLTTSSVGGGVTALVPDGLGACPLPLEDVLPQPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="127576" PGL_stop="131107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127576" e_stop="127660"/>
            <exon e_start="129523" e_stop="129620"/>
            <exon e_start="129704" e_stop="129735"/>
            <exon e_start="130502" e_stop="130565"/>
            <exon e_start="130645" e_stop="131107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="127576" e_stop="127660" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="127661" i_stop="129522" i_length="1862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129523" e_stop="129620" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="129621" i_stop="129703" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129704" e_stop="129735" e_length="32"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.696">
            <gDNA_intron_boundary i_start="129736" i_stop="130501" i_length="766"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130502" e_stop="130565" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130566" i_stop="130644" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="130645" e_stop="131107" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127576" stop="127660"/>
              <exon start="129523" stop="129620"/>
              <exon start="129704" stop="129735"/>
              <exon start="130502" stop="130565"/>
              <exon start="130645" stop="131107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGATATTGGTATGTGGTCATCATTGCCAATCTTGCCATCTCCTTGGATTATGGGCCCAAGATACTTGAAGCTTCCTCTCTTAG : TCTCAATTGGACAAACAACAGATGTACAAAAGGGAGCTTCTTTGTTTAATCGAGCTTGCATTGGATGTCATTATGAAGGTGGAAATATAATCCAGCCT : GGTGCGACACTCTTCTTGAAGGATCTACAAAG : AAATGGAGTTGACACGGAAGAGGAAATCTACCGCGTCACTTACAATGGCAAAGGGAGAATGCCA : GGGTTTGGTCAGAATTGTACACCAAGGGGTCAATGCACTTTTGGTCCTCGATTACAAGACGATGAAATTAAACTCTTAGCTGAGTTTGTGAAGTCTCAAGCTGATCAAGATTGGCCTAAAATCGAAAACAGTGGAGATTGAAAATAACTATTAGTACTTCACAATTGTTCAAAATGTGCATATCATGTTTCTCAGTTGCTTTGTCTTTTCATCTCTCTCGTCCCATTCGGATGTTTACTAAAGGCGATTCAGAGAGAAATAGTCAGTCATTTCACTAGAGAGTTACCTGTTGATGACATGAAGGGTAGCTTCACTTGTTCTGTGTAAAGTTGACCTTATTTACTTCCCAACAATAGTTTCTATTAGTTTTAGATTATAACACATGCTGGACCTGTTAGAGCACATGCTCACATGCATCTGTTATTGTAAACTTTTTTTAATATAAAAACTATAGTTTGACTTT</gDNA_template>
            <first_frame> S  D  I  G  M  W  S  S  L  P  I  L  P  S  P  W  I  M  G  P  R  Y  L  K  L  P  L  L   : V  S  I  G  Q  T  T  D  V  Q  K  G  A  S  L  F  N  R  A  C  I  G  C  H  Y  E  G  G  N  I  I  Q  P  :  G  A  T  L  F  L  K  D  L  Q  R :   N  G  V  D  T  E  E  E  I  Y  R  V  T  Y  N  G  K  G  R  M  P  :  G  F  G  Q  N  C  T  P  R  G  Q  C  T  F  G  P  R  L  Q  D  D  E  I  K  L  L  A  E  F  V  K  S  Q  A  D  Q  D  W  P  K  I  E  N  S  G  D  *  K  *  L  L  V  L  H  N  C  S  K  C  A  Y  H  V  S  Q  L  L  C  L  F  I  S  L  V  P  F  G  C  L  L  K  A  I  Q  R  E  I  V  S  H  F  T  R  E  L  P  V  D  D  M  K  G  S  F  T  C  S  V  *  S  *  P  Y  L  L  P  N  N  S  F  Y  *  F  *  I  I  T  H  A  G  P  V  R  A  H  A  H  M  H  L  L  L  *  T  F  F  N  I  K  T  I  V  *  L  </first_frame>
            <second_frame>  L  I  L  V  C  G  H  H  C  Q  S  C  H  L  L  G  L  W  A  Q  D  T  *  S  F  L  S  *  :  S  Q  L  D  K  Q  Q  M  Y  K  R  E  L  L  C  L  I  E  L  A  L  D  V  I  M  K  V  E  I  *  S  S  L :   V  R  H  S  S  *  R  I  Y  K   : E  M  E  L  T  R  K  R  K  S  T  A  S  L  T  M  A  K  G  E  C  Q :   G  L  V  R  I  V  H  Q  G  V  N  A  L  L  V  L  D  Y  K  T  M  K  L  N  S  *  L  S  L  *  S  L  K  L  I  K  I  G  L  K  S  K  T  V  E  I  E  N  N  Y  *  Y  F  T  I  V  Q  N  V  H  I  M  F  L  S  C  F  V  F  S  S  L  S  S  H  S  D  V  Y  *  R  R  F  R  E  K  *  S  V  I  S  L  E  S  Y  L  L  M  T  *  R  V  A  S  L  V  L  C  K  V  D  L  I  Y  F  P  T  I  V  S  I  S  F  R  L  *  H  M  L  D  L  L  E  H  M  L  T  C  I  C  Y  C  K  L  F  L  I  *  K  L  *  F  D  F </second_frame>
            <third_frame>   *  Y  W  Y  V  V  I  I  A  N  L  A  I  S  L  D  Y  G  P  K  I  L  E  A  S  S  L  S :   L  N  W  T  N  N  R  C  T  K  G  S  F  F  V  *  S  S  L  H  W  M  S  L  *  R  W  K  Y  N  P  A   : W  C  D  T  L  L  E  G  S  T  K  :  K  W  S  *  H  G  R  G  N  L  P  R  H  L  Q  W  Q  R  E  N  A   : R  V  W  S  E  L  Y  T  K  G  S  M  H  F  W  S  S  I  T  R  R  *  N  *  T  L  S  *  V  C  E  V  S  S  *  S  R  L  A  *  N  R  K  Q  W  R  L  K  I  T  I  S  T  S  Q  L  F  K  M  C  I  S  C  F  S  V  A  L  S  F  H  L  S  R  P  I  R  M  F  T  K  G  D  S  E  R  N  S  Q  S  F  H  *  R  V  T  C  *  *  H  E  G  *  L  H  L  F  C  V  K  L  T  L  F  T  S  Q  Q  *  F  L  L  V  L  D  Y  N  T  C  W  T  C  *  S  T  C  S  H  A  S  V  I  V  N  F  F  *  Y  K  N  Y  S  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0002K14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127576" stop="127660"/>
                    <exon start="129523" stop="129620"/>
                    <exon start="129704" stop="129735"/>
                    <exon start="130502" stop="130565"/>
                    <exon start="130645" stop="130785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDIGMWSSLPILPSPWIMGPRYLKLPLLVSIGQTTDVQKGASLFNRACIGCHYEGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYNGKGRMPGFGQNCTPRGQCTFGPRLQDDEIKLLAEFVKSQADQDWPKIENSGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 118 chains have been computed
$ 
$ memory statistics:
$ 37184 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2324 bytes was the average size of a spliced alignment
$ 14344 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1793 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 128 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:45:58
-->
