<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:36:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g17020" ref_strand="+" ref_description="C2_At4g17020">
      <seq>cagaagtagtggagaatcatcattcagcaaagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacggaaacatttgacaggaaaaaggaagccacttatcaactaaacccaaaatttcaatttaatcttcagaagcatctagtccatggtggaatcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgttgaacaatgggagcctgaatataattttggcaactctttttatgacttgcaactgtcgcaaccagtgctttctgctgaaccttataagctccagttaaggtggaaagaccacaaacataagctcttcgatgatgaaaatcttncagcgtggactttttagtcagagagacgatagagaacctnncaggttgactgaaagtgggttccagttcttgctaatggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12207" stop="8918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11915" g_stop="11707" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11234" g_stop="11067" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="372" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10400" g_stop="10332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="441" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="535" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9669" i_stop="9554" i_length="116">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9553" g_stop="9401" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="688" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9269" g_stop="9221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="737" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9142" g_stop="9132" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="748" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="C2_At4g17020" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g17020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11915" e_stop="11707"/>
          <exon e_start="11234" e_stop="11067"/>
          <exon e_start="10400" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9553" e_stop="9401"/>
          <exon e_start="9269" e_stop="9221"/>
          <exon e_start="9142" e_stop="9132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACAC</genome_strand>
        <mrna_strand>CAGAAGT-AGTGGAG-A--ATCATCATTCAGCAA-AGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACGGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCACTTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATCTAGTCCATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTTGAACAATGGGAG....................................................................................................................CCTGAATATAATTTTGGCAACTCTTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTTAAGGTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTNCAGCGTGGACTTTTTAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTNNCAGGTTGACTGAAAGTGGGTTCCAGTTCTTG..............................................................................CTAATGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g04955" ref_strand="+" ref_description="C2_At4g04955">
      <seq>gaaggctgagggttagcagagaaacatggaatctggaaagaggagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaagggagaattatatctgttgttgctgaagagaattggcatgtaaattcttcgtttaccacagtggtcaattatggggagtctgttgtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctactagatcttgatggaaaagtggagctggaggatggggtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcaccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacgagcctattggttgtccctttgacgttcttggagacgaccagatggcatgacacatgtagatggaattgataacttcatcattcagatcaaagccaaactttgcatggatctaagttgtcatcgtcttcactcttcttttaggcgtgcaacagggctggagtgtatataataaatctgttgcaggcccttagttgatagtcattggatatttaactctgtagaaaataaatatttcaattgaagctgaaagctcttgttgttgatgaaatacacattaagaattaaattctttttcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25677" stop="33332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25977" g_stop="26082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="200" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="321" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="395" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="472" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="509" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="595" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="655" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="804" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="931" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="932" r_stop="1087" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1198" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1199" r_stop="1309" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1310" r_stop="1408" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1409" r_stop="1557" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="32741" g_stop="33032" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1558" r_stop="1846" r_length="289" r_score="0.832"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1847" polyA_stop="1863"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="C2_At4g04955" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>1849</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g04955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25977" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32741" e_stop="33032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTG--TAT-AT-AATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATA</genome_strand>
        <mrna_strand>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAGGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGGAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTCGTTTACCACAGTGGTCAATTATGGGGAGTCTGTTGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTACTAGATCTTGATGGAAAAGTGGAGCTGGAGGATGGGGTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCACCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACGAGCCTATTG........................................................................--GT--TG-TCC--CTTTGACGT-TCTTGGAGACGACCAGATGGCATGACACATGTAGATGGAATTGATAACTTCATCATTCAGATCAAAGCCAAACTTTGCATGGATCTAAGTTG-TCATCGTCTTCACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATAAATCTGTTGCAGGCCCTTAGTTGATAGTCATTGGATATTTAACTCTGTAGAAAATAAATATTTCAATTGAAGCTGAAAGCTCTTGTTGTTGATGAAATACACATTAAGAATTAAATTCTTTTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT103-R" ref_strand="+" ref_description="CT103-R">
      <seq>cacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcacctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaacaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50186" stop="51060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50486" g_stop="50760" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="CT103-R" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="CT103-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50486" e_stop="50760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCC</genome_strand>
        <mrna_strand>CACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCACCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAACAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g02680" ref_strand="+" ref_description="C2_At1g02680">
      <seq>taattttggggatttcaatttgaaattctgttttcaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacattagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagggtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcactcgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgagggggaagtgtgatcttagttcagaatgacaaattgagtggcaccataggaccagtatacaatttaccaacactggagtaaatagcctgcttgttctcatttttctctagcacaatagatgtccgagtcaccttgtagctgcgttttctctagcacaatagatcctcaatgctgaaatcagtttcttaagtgctcttttggtgcattgaacgccacctgtgtgtagtttgacagttctaaagatctgcacaaactgatggaatgagtagtaaggtaactctgtgaagtcacccgattagattgattttgatctgtttgcaatgcaaaagatggaagatcttgtacggcttttacctgttaagattctggtaaagctttcccaaaatgcttcttttgtataaggtatttccattcgaaataggaaaaaagatggaatatctcgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77658" stop="100291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77958" g_stop="78034" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="212" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="250" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="310" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81196" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="735" r_length="350" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81197" i_stop="81246" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.787" a_score="0.79"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81247" g_stop="81457" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="944" r_length="209" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="C2_At1g02680" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>946</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g02680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77958" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81196"/>
          <exon e_start="81247" e_stop="81457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTT-GGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTAAAGATGGTGGTGTCAGGTATTTATAATTTCATCAATCTACTTGTTTGTAGA---TCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGCTATGCAAAAGATGGAAGATCCTCTACGGCTTTTACCTTGTTAAGATTCTGGTAAAGCTTTCACAAAATGCTTCATTTTGTGCAAGTTATAAACATTCTAAATTGAAAAAAAAAAGATGGAAAATCTCGTAATCA</genome_strand>
        <mrna_strand>TAATTTTGGGGATTTCAATTTGAAATTCTGTTTTCAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACATTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGGGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTCGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCATAGGACCAGTATACAATTT-ACCAACACTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCTCTAGCACAATAGATGTCCGAGTCACCTTGTAGCTGCGTTTTCTCTAGCACAATAGATCCTCAATGCTGAAATCAGTTTCTTAAGTGCTCTTTTGGTGCATTGAACGCCACCTGTGTGTAGTTTGACAGTTCTA..................................................AAGATCTGCACAAACTGATGGAATGAGTAGTAAGGTAACTCTGTGAAGTCACCCGATTAGATTGATTTTGATCTGTTTGCAATGCAAAAGATGGAAGATCTTGTACGGCTTTTACC-TGTTAAGATTCTGGTAAAGCTTTCCCAAAATGCTTC-TTTTGTATAAGGTATTTCCATTCGAAA-T--AGGAAAAAAGATGGAATATCTCGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11915" PGL_stop="9132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11915" e_stop="11707"/>
            <exon e_start="11234" e_stop="11067"/>
            <exon e_start="10400" e_stop="10332"/>
            <exon e_start="9763" e_stop="9670"/>
            <exon e_start="9553" e_stop="9401"/>
            <exon e_start="9269" e_stop="9221"/>
            <exon e_start="9142" e_stop="9132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.933" e_score="0.962"/>
          <exon-intron don_prob="0.989" acc_prob="0.968" e_score="0.994"/>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="0.942"/>
          <exon-intron don_prob="0.964" acc_prob="0.784" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.833" e_score="0.967"/>
          <exon-intron don_prob="0.967" acc_prob="0.993" e_score="0.918"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="11915" e_stop="11707" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.933">
            <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="11234" e_stop="11067" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.968">
            <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="10400" e_stop="10332" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="9763" e_stop="9670" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.784">
            <gDNA_intron_boundary i_start="9669" i_stop="9554" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="9553" e_stop="9401" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.833">
            <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="0.918">
            <gDNA_exon_boundary e_start="9269" e_stop="9221" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9142" e_stop="9132" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11915" stop="11707"/>
              <exon start="11234" stop="11067"/>
              <exon start="10400" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9553" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g17020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG : ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG : GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG : TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG : CCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG : AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG : CTAATGGACAC</gDNA_template>
            <first_frame> Q  K  L  G  E  N  H  H  H  S  T  T  A  K  T  L  D  *  E  I  E  V  L  K  T  F  I  *  S  I  T  T  M  P  Q  V  K  I  V  A  R  N  F  M  D  M  V  A  S  L  P  V  M  K  L  D  M  L  Y  D  N  S  F  I  C  E  A  I  L  R :   S  L  P  P  L  A  K  K  Y  V  L  Q  M  L  Y  I  D  I  P  I  T  A  K  S  M  E  E  W  V  L  P  D  G  F  S  K  H  K  V  A  I  D  R  L  I  Q  L  R  V  M  T  E  T  F  D  R :   K  K  E  A  M  Y  Q  L  N  P  K  F  Q  F  N  L  Q  K  H  I  V  Y  G :   G  V  L  P  R  E  P  M  P  S  N  I  T  V  R  L  P  S  L  E  E  L  E  A  Y  A  V  E  Q  W  E  :  P  E  Y  N  F  G  N  Y  F  Y  D  L  Q  L  S  Q  P  V  L  S  A  E  P  Y  K  L  Q  *  S  W  K  D  H  K  H  K  L  F  D  D  E  N  L  P  A  W  T  F  K  S  E  :  R  R  *  R  T  S  K  V  D  *  K  W  V  P  I  L   : A  N  G  H </first_frame>
            <second_frame>  R  N  *  G  R  I  I  I  I  Q  Q  Q  L  K  P  *  I  E  K  L  K  Y  *  K  P  L  F  D  L  *  Q  Q  C  R  K  *  R  S  S  P  G  I  S  W  T  W  W  L  H  C  L  S  *  N  S  T  C  F  T  T  I  P  L  S  V  K  P  F  L   : D  R  Y  L  P  *  R  R  S  M  C  C  K  C  C  I  *  T  Y  Q  L  Q  P  S  R  W  R  S  G  C  F  Q  M  D  S  Q  S  I  K  L  P  L  I  D  *  Y  S  *  E  *  *  Q  K  H  L  T   : G  K  R  K  P  C  I  N  *  T  Q  N  F  N  L  I  F  R  S  I  *  S  M   : V  E  S  Y  Q  G  N  Q  C  L  L  I  S  L  *  G  F  L  A  W  R  S  *  R  H  M  L  S  N  N  G  S :   L  N  I  I  L  A  T  I  F  M  T  C  N  C  R  N  Q  C  F  L  L  N  L  I  S  S  S  E  A  G  K  T  T  N  I  S  S  S  M  M  K  I  F  Q  R  G  L  L  S  Q  R :   D  D  R  E  P  P  R  L  T  E  S  G  F  Q  F  L  :  L  M  D   </second_frame>
            <third_frame>   E  I  R  G  E  S  S  S  F  N  N  S  *  N  P  R  L  R  N  *  S  I  E  N  L  Y  L  I  Y  N  N  N  A  A  S  E  D  R  R  Q  E  F  H  G  H  G  G  F  I  A  C  H  E  T  R  H  A  L  R  Q  F  L  Y  L  *  S  H  S  *  :  I  V  T  S  L  S  E  E  V  C  A  A  N  V  V  Y  R  H  T  N  Y  S  Q  V  D  G  G  V  G  A  S  R  W  I  L  K  A  *  S  C  H  *  *  I  D  T  A  E  S  N  D  R  N  I  *  Q  :  E  K  G  S  H  V  S  T  K  P  K  I  S  I  *  S  S  E  A  Y  S  L  W  :  W  S  L  T  K  G  T  N  A  F  *  Y  H  C  E  A  S  *  L  G  G  V  R  G  I  C  C  R  T  M  G   : A  *  I  *  F  W  Q  L  F  L  *  L  A  T  V  A  T  S  A  F  C  *  T  L  *  A  P  V  K  L  E  R  P  Q  T  *  A  L  R  *  *  K  S  S  S  V  D  F  *  V  R   : E  T  I  E  N  L  Q  G  *  L  K  V  G  S  N  S  C :   *  W  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11831" stop="11707"/>
                    <exon start="11234" stop="11067"/>
                    <exon start="10400" stop="10332"/>
                    <exon start="9763" stop="9670"/>
                    <exon start="9553" stop="9470"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTMPQVKIVARNFMDMVASLPVMKLDMLYDNSFICEAILRSLPPLAKKYVLQMLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLPSLEELEAYAVEQWEPEYNFGNYFYDLQLSQPVLSAEPYKLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25977" PGL_stop="33032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25977" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32741" e_stop="33032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="0.991"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="0.957"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="0.959"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.973"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="0.973"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.955"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.962" acc_prob="0.957" e_score="0.960"/>
          <exon-only e_score="0.832"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="25977" e_stop="26082" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="29277" e_stop="29362" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.477" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29650" e_stop="29709" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="0.973">
            <gDNA_exon_boundary e_start="29876" e_stop="30024" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="30333" e_stop="30459" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="30819" e_stop="30974" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="0.973">
            <gDNA_exon_boundary e_start="31068" e_stop="31178" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628"/>
          </intron>
          <exon e_serial="13" e_score="0.955">
            <gDNA_exon_boundary e_start="31807" e_stop="31917" e_length="111"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228"/>
          </intron>
          <exon e_serial="14" e_score="0.970">
            <gDNA_exon_boundary e_start="32146" e_stop="32244" e_length="99"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275"/>
          </intron>
          <exon e_serial="15" e_score="0.960">
            <gDNA_exon_boundary e_start="32520" e_stop="32668" e_length="149"/>
          </exon>
          <intron i_serial="15" don_prob="0.962" acc_prob="0.957">
            <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72"/>
          </intron>
          <exon e_serial="16" e_score="0.832">
            <gDNA_exon_boundary e_start="32741" e_stop="33032" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25977" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32741" stop="33032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g04955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : TCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATA</gDNA_template>
            <first_frame> E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  S  Y  C  S  M  F  C  I  G  W  R  R  P  H  G  M  T  C  R  W  N  *  *  H  C  H  S  D  Q  N  K  S  L  H  G  S  K  L  F  I  V  L  T  L  L  L  G  V  Q  Q  G  W  S  V  Y  N  L  L  Y  A  L  S  *  *  S  F  D  I  *  L  C  R  K  *  I  C  H  F  K  L  K  A  L  V  V  D  E  V  H  I  K  T  *  I  H  L  H  </first_frame>
            <second_frame>  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  C :   L  T  V  P  C  F  A  *  V  G  D  D  H  M  A  *  H  V  D  G  I  D  N  T  V  I  Q  I  K  T  N  L  C  M  D  L  S  C  S  S  S  *  L  F  F  *  A  C  N  R  A  G  V  Y  I  I  C  C  T  P  L  V  D  S  H  S  I  F  N  S  V  E  N  K  Y  V  T  L  S  *  K  L  L  L  L  M  K  Y  T  L  R  L  E  Y  I  F  I </second_frame>
            <third_frame>   R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : V  L  L  F  H  V  L  H  R  L  E  T  T  T  W  H  D  M  *  M  E  L  I  T  L  S  F  R  S  K  Q  I  F  A  W  I  *  V  V  H  R  L  N  S  S  F  R  R  A  T  G  L  E  C  I  *  S  V  V  R  P  *  L  I  V  I  R  Y  L  T  L  *  K  I  N  M  S  L  *  A  E  S  S  C  C  *  *  S  T  H  *  D  L  N  T  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="50486" PGL_stop="50760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50486" e_stop="50760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="50486" e_stop="50760" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50486" stop="50760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT103-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCC</gDNA_template>
            <first_frame> H  L  *  C  S  S  *  R  V  H  Q  I  L  Q  D  V  V  S  A  P  R  W  *  M  P  *  R  R  K  G  L  I  L  D  P  L  I  F  Y  P  T  K  K  *  G  R  D  *  R  P  S  L  T  G  Q  L  I  R  S  C  I  T  K  A  N  L  *  E  D  V  I  S  C  W  N  Y  I  A  G  V  N  *  S  Q  H  Y  L  N  R  R  T   </first_frame>
            <second_frame>  T  C  N  A  L  H  E  G  Y  T  R  F  S  K  M  W  F  Q  L  Q  G  G  K  C  L  E  G  G  R  G  *  F  W  I  L  *  Y  S  I  R  R  R  S  K  A  G  T  E  D  L  L  *  L  A  N  L  S  A  A  V  L  Q  R  R  T  C  R  R  M  *  Y  R  A  G  I  T  *  R  G  *  I  E  V  N  I  I  *  I  E  E  P  </second_frame>
            <third_frame>   P  V  M  L  F  M  K  G  T  P  D  S  P  R  C  G  F  S  S  K  V  V  N  A  L  K  E  E  G  V  D  F  G  S  F  D  I  L  S  D  E  E  V  R  Q  G  L  K  T  F  S  N  W  P  T  Y  P  Q  L  Y  Y  K  G  E  L  V  G  G  C  D  I  V  L  E  L  H  S  G  G  E  L  K  S  T  L  S  E  *  K  N  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50488" stop="50751"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVMLFMKGTPDSPRCGFSSKVVNALKEEGVDFGSFDILSDEEVRQGLKTFSNWPTYPQLYYKGELVGGCDIVLELHSGGELKSTLSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="77958" PGL_stop="81457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77958" e_stop="78034"/>
            <exon e_start="78673" e_stop="78806"/>
            <exon e_start="78895" e_stop="78932"/>
            <exon e_start="79714" e_stop="79773"/>
            <exon e_start="79937" e_stop="80011"/>
            <exon e_start="80846" e_stop="81196"/>
            <exon e_start="81247" e_stop="81457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="0.935"/>
          <exon-intron don_prob="0.718" acc_prob="0.976" e_score="0.970"/>
          <exon-intron don_prob="0.952" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.959" e_score="0.950"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.787" e_score="0.952"/>
          <exon-only e_score="0.848"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="77958" e_stop="78034" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="78673" e_stop="78806" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.718" acc_prob="0.976">
            <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78895" e_stop="78932" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.933">
            <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="79714" e_stop="79773" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.959">
            <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79937" e_stop="80011" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="80846" e_stop="81196" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.787">
            <gDNA_intron_boundary i_start="81197" i_stop="81246" i_length="50"/>
          </intron>
          <exon e_serial="7" e_score="0.848">
            <gDNA_exon_boundary e_start="81247" e_stop="81457" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77958" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81196"/>
              <exon start="81247" stop="81457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g02680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG : GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT : CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG : GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG : GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTA : ATCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGCTATGCAAAAGATGGAAGATCCTCTACGGCTTTTACCTTGTTAAGATTCTGGTAAAGCTTTCACAAAATGCTTCATTTTGTGCAAGTTATAAACATTCTAAATTGAAAAAAAAAAGATGGAAAATCTCGTAATCA</gDNA_template>
            <first_frame> *  F  W  N  F  N  L  K  F  C  L  Q  L  C  S  R  H  L  Q  W  N  Q  H  F  C  R :   L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  M  Y  G  F  G  D  D  S  N  :  P  L  P  E  T  V  S  L  V  E  D  I  V  V  D  Y  V  T  D  M  :  V  H  K  A  Q  D  I  A  T  K  R  G  K  L  L  T  E  D  F  L  F  L  I  R  K  :  D  L  P  K  L  N  R  C  T  E  L  L  S  M  N  E  E  L  K  Q  A  R  K  A  F  E  V  D  E  E  K  L  A  S  H  Q  *  R  G  S  V  I  L  V  Q  N  D  K  L  S  G  T  V  G  P  V  Y  S  L  T  Y  S  G  V  N  S  L  L  V  L  I  F  R  *  H  N  R  C  L  S  H  L  V  A  A  F  T  L  A  Q  *  I  F  D  A  E  I  S  F  L  S  V  L  L  V  H  *  T  P  P  V  C  S  L  A  V  L  :  I  C  T  N  *  W  N  E  L  *  V  N  S  E  *  S  P  N  *  I  D  F  D  L  F  A  M  Q  K  M  E  D  P  L  R  L  L  P  C  *  D  S  G  K  A  F  T  K  C  F  I  L  C  K  L  *  T  F  *  I  E  K  K  K  M  E  N  L  V  I  </first_frame>
            <second_frame>  N  F  G  I  L  I  *  N  S  V  Y  N  C  A  L  V  I  S  S  G  I  N  T  F  A   : G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  *  C  M  V  L  E  M  I  A  I :   H  F  Q  K  L  C  H  L  L  K  T  S  W  W  I  M  S  L  I  W :   C  T  K  L  R  I  L  Q  P  K  G  G  S  F  *  P  R  T  F  C  S  *  L  E  R :   T  C  R  N  L  T  G  V  Q  N  C  C  P  *  M  R  S  *  N  K  L  G  R  L  S  R  S  M  K  R  N  W  L  H  I  S  E  G  E  V  *  S  *  F  R  M  T  N  *  V  A  P  *  D  Q  Y  T  V  *  P  T  L  E  *  I  A  C  L  F  S  F  F  A  S  T  I  D  V  *  V  T  L  *  L  R  L  L  L  H  N  R  S  S  M  L  K  S  V  S  *  V  F  Y  W  C  I  E  R  H  L  C  V  V  W  Q  F  * :   S  A  Q  T  D  G  M  S  C  K  L  T  L  S  S  H  P  I  R  L  I  L  I  C  L  L  C  K  R  W  K  I  L  Y  G  F  Y  L  V  K  I  L  V  K  L  S  Q  N  A  S  F  C  A  S  Y  K  H  S  K  L  K  K  K  R  W  K  I  S  *  S </second_frame>
            <third_frame>   I  L  E  F  *  F  E  I  L  F  T  I  V  L  S  S  S  P  V  E  S  T  L  L  Q  :  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H  D  V  W  F  W  R  *  *  Q   : S  T  S  R  N  C  V  T  C  *  R  H  R  G  G  L  C  H  *  Y   : G  A  Q  S  S  G  Y  C  N  Q  K  G  E  A  F  D  R  G  L  S  V  L  N  *  K   : G  L  A  E  T  *  P  V  Y  R  T  V  V  H  E  *  G  A  E  T  S  S  E  G  F  R  G  R  *  R  E  I  G  F  T  S  V  K  G  K  C  D  L  S  S  E  *  Q  I  E  W  H  R  R  T  S  I  Q  F  N  L  L  W  S  K  *  P  A  C  S  H  F  S  L  A  Q  S  M  S  E  S  P  C  S  C  V  Y  S  C  T  I  D  L  R  C  *  N  Q  F  L  K  C  S  I  G  A  L  N  A  T  C  V  *  F  G  S  S   : N  L  H  K  L  M  E  *  V  V  S  *  L  *  V  V  T  Q  L  D  *  F  *  S  V  C  Y  A  K  D  G  R  S  S  T  A  F  T  L  L  R  F  W  *  S  F  H  K  M  L  H  F  V  Q  V  I  N  I  L  N  *  K  K  K  D  G  K  S  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78692" stop="78806"/>
                    <exon start="78895" stop="78932"/>
                    <exon start="79714" stop="79773"/>
                    <exon start="79937" stop="80011"/>
                    <exon start="80846" stop="80956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLKMNNSSAGPSSKARVGASQPSESSLKRKRGMFQKDLQHMMYGFGDDSNPLPETVSLVEDIVVDYVTDMVHKAQDIATKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFEVDEEKLASHQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81248" stop="81454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAQTDGMSCKLTLSSHPIRLILICLLCKRWKILYGFYLVKILVKLSQNASFCASYKHSKLKKKRWKIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 46640 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 11660 bytes was the average size of a spliced alignment
$ 9920 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2480 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:36:24
-->
