<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:33:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373707" ref_strand="+" ref_description="SGN-E373707 [TUS-33-K24](-)">
      <seq>atgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcataatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="81" stop="3320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="381" g_stop="516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="517" i_stop="2452" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2453" g_stop="3015" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="699" r_length="563" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E373707" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="381" e_stop="516"/>
          <exon e_start="2453" e_stop="3015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</genome_strand>
        <mrna_strand>ATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCATAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374281" ref_strand="+" ref_description="SGN-E374281 [TUS-33-F20](-)">
      <seq>tgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="82" stop="3320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="382" g_stop="516" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="517" i_stop="2452" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2453" g_stop="3015" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="698" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E374281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="382" e_stop="516"/>
          <exon e_start="2453" e_stop="3015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</genome_strand>
        <mrna_strand>TGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351758" ref_strand="+" ref_description="SGN-E351758 [cTOS-8-F2]">
      <seq>ccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgntggttggtttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgatgtatttaggttccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="2174" stop="3332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2474" g_stop="3039" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E351758" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2474" e_stop="3039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAATCTGTAA</genome_strand>
        <mrna_strand>CCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGNTGGTTGGTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGGTTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353166" ref_strand="+" ref_description="SGN-E353166 [cTOS-14-O5]">
      <seq>atcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgatgtatttagtttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="2316" stop="3332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2616" g_stop="3031" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="431"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E353166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2616" e_stop="3031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCA</genome_strand>
        <mrna_strand>ATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372239" ref_strand="+" ref_description="SGN-E372239 [TUS-30-H5](-)">
      <seq>aattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtattttattggctacaattttaagaacttttgggcaagttaaggaaaatagtcatgagtatgaaggtgaatatgcagaaccatcagctccactttttcgccctccgcaactgcctccaaatcctctgtatccatatgttattggtgaaccagttcatattgaaccacattttgcctacaagaatgtttgagttttggaagacaattggtttgatccctttgtaaaactatgaaatcttgaaacctctctttttggcttattatgttattgaagtttgcagaagttgaagtgaatgaagttatcctttatggaaaaatatgctatgtagcttttccaattgcttaagaatgagctttgttaatcagaaacagatgagaccattttatgtataattaagattgtgagttttgcaacttttatgtttttgagtggtatcatttttgtttattacaatgaacaatgatattacattgtttatgcatgttgaacttttttggactttttcatatattaaactctcctaatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="4556" stop="2838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4256" g_stop="4217" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4216" i_stop="3872" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3871" g_stop="3767" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="145" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3766" i_stop="3676" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3675" g_stop="3139" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="682" r_length="537" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3138" i_stop="3052" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3051" g_stop="3041" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="693" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E372239" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4256" e_stop="4217"/>
          <exon e_start="3871" e_stop="3767"/>
          <exon e_start="3675" e_stop="3139"/>
          <exon e_start="3051" e_stop="3041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTCTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTCTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTCTTTGGACTTCTTCATATATTAAACTCTCCTAATGAAAATCCTTTGCGAACATTTTCATTTTCTGAACCATTTCTTATCCTAAGTAAAAATTTAACAGCACTATCTTACTTCAAATGCTTTGCAGAAAAAGGGAAA</genome_strand>
        <mrna_strand>AATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATTTTATTGGCTACAATTTTAAGAACTTTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTTTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTTTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTTTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTTTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTTTTTGGACTTTTTCATATATTAAACTCTCCTAATGAAA.......................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402408" ref_strand="+" ref_description="SGN-E402408 [PPC-7-L17]">
      <seq>gagctatttacctagctagtgttcttctatttcccctcctaagtgaatgaaacagtttctgtttaaagctcaagatggtaaaacttgtaaagagttgcctgcgattatccctcaagaccacaaacataacaataggatttatgggcattgcaatgcttatttatggtatatggatgattagagtttggcagcgcgatgcagccaactcaccttcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtgtgcaatcactttccttggtcatgttgcagcaaactcttccaactcctattgcctctcattttatatgttcatcatatttgttcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttaccagaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatatctgccaatggattgccctgctctgtgttctaacacaagggtgttgtatcttattggctacaattctaagaactcttgggcaagttaaggaaaatagtcatgagtatgaaggtgaatatgcagaaccatcagctccacttcttcgccctccggaactgccaccaaatcctctgtatccatatgttattggtgaaccagtttatattgaaccacattctgtctacaagaatgtttgagttttggaagacaaaagaaagctgaagtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="5145" stop="3164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4846" g_stop="4606" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4605" i_stop="4514" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4414" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="341" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4413" i_stop="4298" i_length="116">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4297" g_stop="4217" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="422" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4216" i_stop="3872" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3871" g_stop="3767" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="527" r_length="105" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3766" i_stop="3676" i_length="91">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.354" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3675" g_stop="3465" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="738" r_length="211" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E402408" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4846" e_stop="4606"/>
          <exon e_start="4513" e_stop="4414"/>
          <exon e_start="4297" e_stop="4217"/>
          <exon e_start="3871" e_stop="3767"/>
          <exon e_start="3675" e_stop="3465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACA</genome_strand>
        <mrna_strand>GAGCTATTTACCTAGCTAGTGTTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGTTTCTGTTTAAAGCTCAAGATGGTAAAACTTGTAAAGAGTTGCCTGCGATTATCCCTCAAGACCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTTATTTATGGTATATGGATGATTAGAGTTTGGCAGCGCGATGCAGCCAACTCACCTTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAACTCTTCCAACTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCATCATATTTGTTCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTACCAGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATATCTGCCAATGGATTGCCCTGCTCTGTGTTCTAACACAA...........................................................................................GGGTGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGGAACTGCCACCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTTATATTGAACCACATTCTGTCTACAAGAATGTTTGAGTTTTGGAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372240" ref_strand="+" ref_description="SGN-E372240 [TUS-30-H5]">
      <seq>aacaatttacctagcaagtgctcttctatttcccctcctaagtgaatgaaacagctcctgtttaaaattcaagatggtaaaacttgtaaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtgtgcaatcactttccttggtcatgttgcagcaagcactgccaattcctattgcctctcattttatatgttcttcatatttgtgcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtatcttattggctacaattctaagaactcttgggcaagttaaggaaaatagtcatgagtatgaaggtgaatatgcagaaccatcagctccacttcttcgccctccgcaactgcctccaaatcctctgtatccatatgttattggtgaaccagttcatattgaaccacattctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="5145" stop="3193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4845" g_stop="4606" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4605" i_stop="4514" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4414" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="340" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4413" i_stop="4298" i_length="116">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4297" g_stop="4217" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="421" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4216" i_stop="3872" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3871" g_stop="3767" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="526" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3766" i_stop="3676" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3675" g_stop="3493" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="709" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E372240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4845" e_stop="4606"/>
          <exon e_start="4513" e_stop="4414"/>
          <exon e_start="4297" e_stop="4217"/>
          <exon e_start="3871" e_stop="3767"/>
          <exon e_start="3675" e_stop="3493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCC</genome_strand>
        <mrna_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266308" ref_strand="+" ref_description="SGN-E266308 [cLEI-3-J14]">
      <seq>ctgtttaaaattcaagatggtaaaacttgtaaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtgtgcaatcactttccttggtcatgttgcagcaagcactgccaattcctattgcctctcattttatatgttcttcatatttgtgcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtatcttattggctacaattctaagaactcttgggcaagttaaggaaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="5088" stop="3316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4788" g_stop="4606" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4605" i_stop="4514" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4414" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="283" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4413" i_stop="4298" i_length="116">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4297" g_stop="4217" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="364" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4216" i_stop="3872" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3871" g_stop="3767" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="469" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3766" i_stop="3676" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3675" g_stop="3616" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="529" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E266308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4788" e_stop="4606"/>
          <exon e_start="4513" e_stop="4414"/>
          <exon e_start="4297" e_stop="4217"/>
          <exon e_start="3871" e_stop="3767"/>
          <exon e_start="3675" e_stop="3616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGT</genome_strand>
        <mrna_strand>CTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402783" ref_strand="+" ref_description="SGN-E402783 [PPC-8-P7]">
      <seq>caacttggtagataacaataagctctttcttggaaacttccttttttttcttagcctatctgggcaatttttgcatatctaggcatgccaccatcactattatttctttaaaaaatcaacaacccaaacagttacaaatcacatcaatatgcttttttatgcattcttcaaagtatcctttcaaacataaagagctatttaccttctatttcccctcctaagtgaatgaaacagtttctgtttaaagttcaagatggtaaaacttgtaaagagttgcctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgcttatttatggtatatggatgattagagtttggcagcgcgatgcagccaactcaccttcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtttgcaatcactttccttggtcatgttgcagcaaactctgccaactcctattgcctctcattttatatgttcatcatatttgttcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttaccagaagatccatcangaaggtttgatgatttcaaggattttgtggactcgaatagcgatatctgccaatggattgccctgctctgtgttctaacacaggggtgttgtatcttattggctacaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="5319" stop="3347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4996" g_stop="4606" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="420" r_length="377" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4605" i_stop="4514" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4414" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="520" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4413" i_stop="4298" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4297" g_stop="4217" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="601" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4216" i_stop="3872" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3871" g_stop="3767" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="706" r_length="105" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3766" i_stop="3676" i_length="91">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.354" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3675" g_stop="3647" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="735" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E402783" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4996" e_stop="4606"/>
          <exon e_start="4513" e_stop="4414"/>
          <exon e_start="4297" e_stop="4217"/>
          <exon e_start="3871" e_stop="3767"/>
          <exon e_start="3675" e_stop="3647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTGAGCCTATCTGGGGAAATTTTTGCATATCTAGGCATGTCACCATCACTATTATTTCTTTTAAAAAAATCAACAATCTAAACAGTTATAAATCACATCAATATGCTTTCTAATGAACTCTTCCAAGCACCCTTAAAAACATAACAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCT</genome_strand>
        <mrna_strand>TTTTTTCTTAGCCTATCTGGGCA-ATTTTTGCATATCTAGGCATGCCACCATCACTATTATTTC-TTTAAAAA-ATCAACAACCCAAACAGTTACAAATCACATCAATATGCTTTTTTATGCATTCTTCAAAGTATCCTTTCAAACAT-A-AA-GAGCTATTTA-C-------CTTCTATTTCCCCTCCTAAGTGAATGAAACAGTTTCTGTTTAAAGTTCAAGATGGTAAAACTTGTAAAGAGTTGCCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTTATTTATGGTATATGGATGATTAGAGTTTGGCAGCGCGATGCAGCCAACTCACCTTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTTTGCAATCACTTTCCTTGGTCATGTTGCAGCAAACTCTGCCAACTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCATCATATTTGTTCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTACCAGAAGATCCATCANGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATATCTGCCAATGGATTGCCCTGCTCTGTGTTCTAACACAG...........................................................................................GGGTGTTGTATCTTATTGGCTACAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285799" ref_strand="+" ref_description="SGN-E285799 [cLES-5-B17]">
      <seq>aacaatttacctagcaagtgctcttctatttcccctcctaagtgaatgaaacagctcctgcttaaaattcaagatggcaaaacttgtcaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggcgttggcactgctttgcgtgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="5145" stop="4166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4845" g_stop="4606" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4605" i_stop="4514" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4466" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E285799" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4845" e_stop="4606"/>
          <exon e_start="4513" e_stop="4466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCAC</genome_strand>
        <mrna_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGCTTAAAATTCAAGATGGCAAAACTTGTCAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGCGTTGGCACTGCTTTGCGTGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747305" ref_strand="+" ref_description="SGN-E747305 [GI|47104657]">
      <seq>aattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagtataattaaggacctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttagccgagatgaaggaatttcttcgtcgtcaaaagcaataactcttctttgcatactgtcttcatttaaatgaagggtttcatcagttatgtccatctatatatttattcccaacttaacttgtacatgaattttgttgtgggtgtattgtatttcattgtgcttcgatttccttctttcgacaccttgtgatgttgtactaataatgggactacaaatcatcgtcaaaactattgatagcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12211" stop="4997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11911" g_stop="11707" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11234" g_stop="11067" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="373" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10400" g_stop="10332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="442" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="536" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9669" i_stop="9502" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9501" g_stop="9401" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="637" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9269" g_stop="9221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="686" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9142" g_stop="9083" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="746" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9082" i_stop="8407" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8406" g_stop="8338" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="815" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="8337" i_stop="8027" i_length="311">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8026" g_stop="7943" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="899" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="900" r_stop="983" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="984" r_stop="1069" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="6990" g_stop="6900" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1160" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="6144" g_stop="6064" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1241" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="5812" g_stop="5738" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1242" r_stop="1316" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="5737" i_stop="5643" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="5642" g_stop="5297" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1662" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1663" polyA_stop="1678"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E747305" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1662</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11911" e_stop="11707"/>
          <exon e_start="11234" e_stop="11067"/>
          <exon e_start="10400" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9501" e_stop="9401"/>
          <exon e_start="9269" e_stop="9221"/>
          <exon e_start="9142" e_stop="9083"/>
          <exon e_start="8406" e_stop="8338"/>
          <exon e_start="8026" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6900"/>
          <exon e_start="6144" e_stop="6064"/>
          <exon e_start="5812" e_stop="5738"/>
          <exon e_start="5642" e_stop="5297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAGA</genome_strand>
        <mrna_strand>AATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541967" ref_strand="+" ref_description="SGN-E541967 [TUS-63-A14](-)">
      <seq>aattaaggacctttcagatttgggattggtcaagctgcagcaggaaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttagccgagatgaaggaatttcttcgtcgtcaaaagcaataactcttctttgcatactgtcttcatttaaatgaagggtttcatcagttatgtccatctatatatttattcccaacttaacttgtacatgaattttgttgtgggtgtattgtatttcattgtgcttcgatttccttctttcgacaccttgtgatgttgtactaataatgggactacaaatcatcgtcaaaactattgattagcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8285" stop="4997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7985" g_stop="7943" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="127" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="213" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6990" g_stop="6900" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="304" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6144" g_stop="6064" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="385" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5812" g_stop="5738" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="460" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5737" i_stop="5643" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5642" g_stop="5297" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="807" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E541967" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7985" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6900"/>
          <exon e_start="6144" e_stop="6064"/>
          <exon e_start="5812" e_stop="5738"/>
          <exon e_start="5642" e_stop="5297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGA-TAGCCTAAAAGA</genome_strand>
        <mrna_strand>AATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GAAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATTAGCCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617763" ref_strand="+" ref_description="SGN-E617763 [66617]">
      <seq>attggttagctgcagcagggaaggaaagagagttggtttatccaccaaactggcgaccaacctgtcaattagcttagcggatacaacatcaaggaaacagggtttatcgttattgaaacaaacttcagactgtatgcatattcaacgtcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagaaagtttgtataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgcagagaggataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatggagccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgctagagaatatggaggattactgtgggaggactctaagcgaatgcgtctcgttgttaaagctgatattttgactgagatgaaggaatttcttcgtcggtcaaaagcaaataactcttcttttcagacggccttcatttagatgaaggatttcatcagttgtcgtccggtttatatatttattcccagtttgacttgtacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8149" stop="5115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7961" g_stop="7943" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="100" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="185" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6990" g_stop="6900" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="276" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6144" g_stop="6064" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="357" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251">
            <donor d_prob="0.704" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5812" g_stop="5738" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="432" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5737" i_stop="5643" i_length="95">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5642" g_stop="5415" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="664" r_length="232" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E617763" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7961" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6900"/>
          <exon e_start="6144" e_stop="6064"/>
          <exon e_start="5812" e_stop="5738"/>
          <exon e_start="5642" e_stop="5415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTC-GTCAAAAGC-AATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTAT-GTCC-ATCTATATATTTATTCCCAACTTAACTTGTACATGAA</genome_strand>
        <mrna_strand>ATTGGTTA-GCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTA-TCC-ACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACATCAAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GG-TTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACGTCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAAAGTTTGTATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCAGAGAGGATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGGAGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCTAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGAATGCGTCTCGTTGTTAAAGCTGATATTTTGACTGAGATGAAGGAATTTCTTCGTCGGTCAAAAGCAAATAACTCTTCTTTTCAGACGGCCTTCATTTAGATGAAGGATTTCATCAGTTGTCGTCCGGTTTATATATTTATTCCCAGTTTGACTTGTACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282142" ref_strand="+" ref_description="SGN-E282142 [cLES-4-E14]">
      <seq>acctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8277" stop="5243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7977" g_stop="7943" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="119" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="205" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6990" g_stop="6900" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="296" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6144" g_stop="6064" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="377" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5812" g_stop="5738" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="452" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5737" i_stop="5643" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5642" g_stop="5543" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="552" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E282142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7977" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6900"/>
          <exon e_start="6144" e_stop="6064"/>
          <exon e_start="5812" e_stop="5738"/>
          <exon e_start="5642" e_stop="5543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAG</genome_strand>
        <mrna_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324217" ref_strand="+" ref_description="SGN-E324217 [cTOC-4-A13]">
      <seq>tggattcagcagatcttattgcatttctttgggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagaataattaaagacctttcagatttgggattgatcaatctgcagcagggaaagaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctanggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8696" stop="5485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8396" g_stop="8338" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8337" i_stop="8027" i_length="311">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8026" g_stop="7943" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="143" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6990" g_stop="6900" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="404" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6144" g_stop="6064" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="485" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251">
            <donor d_prob="0.704" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5812" g_stop="5785" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="513" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E324217" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8396" e_stop="8338"/>
          <exon e_start="8026" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6900"/>
          <exon e_start="6144" e_stop="6064"/>
          <exon e_start="5812" e_stop="5785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATC</genome_strand>
        <mrna_strand>TGGATTCAGCAGATCTTATTGCATTTCTTTGGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGAATAATTAAAGACCTTTCAGATTTGGGATTGATCAATCTGCAGCAG...............................................................................................GGAAAGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTANGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282180" ref_strand="+" ref_description="SGN-E282180 [cLES-4-H22]">
      <seq>acctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccaacttccaaatctcattgttggtgctatttaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagttactttccttcagcagaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="8277" stop="5818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7977" g_stop="7943" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="119" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="205" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6990" g_stop="6900" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="297" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6144" g_stop="6118" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="324" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E282180" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7977" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6900"/>
          <exon e_start="6144" e_stop="6118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTAT-TAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCA</genome_strand>
        <mrna_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAACTTCCAAATCTCATTGTTGGTGCTATTTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTACTTTCCTTCAGCAGAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328430" ref_strand="+" ref_description="SGN-E328430 [cTOC-21-P17]">
      <seq>tttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagtataattaaggacctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttcccaatctcattgttggtgctattaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="10660" stop="6646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10360" g_stop="10332" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="123" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9669" i_stop="9502" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9501" g_stop="9401" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9269" g_stop="9221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="273" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9142" g_stop="9083" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="333" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9082" i_stop="8407" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8406" g_stop="8338" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="402" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8337" i_stop="8027" i_length="311">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8026" g_stop="7943" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="486" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7847" g_stop="7764" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="570" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7424" g_stop="7339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="656" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="6990" g_stop="6946" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="701" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E328430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10360" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9501" e_stop="9401"/>
          <exon e_start="9269" e_stop="9221"/>
          <exon e_start="9142" e_stop="9083"/>
          <exon e_start="8406" e_stop="8338"/>
          <exon e_start="8026" e_stop="7943"/>
          <exon e_start="7847" e_stop="7764"/>
          <exon e_start="7424" e_stop="7339"/>
          <exon e_start="6990" e_stop="6946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAA</genome_strand>
        <mrna_strand>TTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCCAATCTCATTGTTGGTGCTATTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320410" ref_strand="+" ref_description="SGN-E320410 [cTOB-22-O8]">
      <seq>tttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtgggacttnttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="9798" stop="8061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9498" g_stop="9401" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9269" g_stop="9221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="149" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9142" g_stop="9083" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="209" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9082" i_stop="8407" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8406" g_stop="8361" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="255" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E320410" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9498" e_stop="9401"/>
          <exon e_start="9269" e_stop="9221"/>
          <exon e_start="9142" e_stop="9083"/>
          <exon e_start="8406" e_stop="8361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGT-GGACTT-TTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGC</genome_strand>
        <mrna_strand>TTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGGACTTNTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541970" ref_strand="+" ref_description="SGN-E541970 [TUS-63-A14]">
      <seq>cagaaattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattnnctgctatggacacaaatgcacagctttggtacatcatcagggagtacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12215" stop="8795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11915" g_stop="11707" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11234" g_stop="11067" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="377" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10400" g_stop="10332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="446" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="540" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9669" i_stop="9502" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9501" g_stop="9401" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="641" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9269" g_stop="9221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="691" r_length="50" r_score="0.918"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9142" g_stop="9095" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="738" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E541970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11915" e_stop="11707"/>
          <exon e_start="11234" e_stop="11067"/>
          <exon e_start="10400" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9501" e_stop="9401"/>
          <exon e_start="9269" e_stop="9221"/>
          <exon e_start="9142" e_stop="9095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCT-TGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATA</genome_strand>
        <mrna_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTNNCTG..............................................................................CT-ATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455240" ref_strand="+" ref_description="SGN-E455240 [cSTS-25-B14]">
      <seq>cagaagtagtggagaatcatcattcagcaaagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacggaaacatttgacaggaaaaaggaagccacttatcaactaaacccaaaatttcaatttaatcttcagaagcatctagtccatggtggaatcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgttgaacaatgggagcctgaatataattttggcaactctttttatgacttgcaactgtcgcaaccagtgctttctgctgaaccttataagctccagttaaggtggaaagaccacaaacataagctcttcgatgatgaaaatcttncagcgtggactttttagtcagagagacgatagagaacctnncaggttgactgaaagtgggttccagttcttgctaatggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12207" stop="8918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11915" g_stop="11707" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11234" g_stop="11067" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="372" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10400" g_stop="10332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="441" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="535" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9669" i_stop="9554" i_length="116">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9553" g_stop="9401" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="688" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9269" g_stop="9221" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="737" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9142" g_stop="9132" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="748" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E455240" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11915" e_stop="11707"/>
          <exon e_start="11234" e_stop="11067"/>
          <exon e_start="10400" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9553" e_stop="9401"/>
          <exon e_start="9269" e_stop="9221"/>
          <exon e_start="9142" e_stop="9132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACAC</genome_strand>
        <mrna_strand>CAGAAGT-AGTGGAG-A--ATCATCATTCAGCAA-AGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACGGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCACTTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATCTAGTCCATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTTGAACAATGGGAG....................................................................................................................CCTGAATATAATTTTGGCAACTCTTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTTAAGGTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTNCAGCGTGGACTTTTTAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTNNCAGGTTGACTGAAAGTGGGTTCCAGTTCTTG..............................................................................CTAATGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425721" ref_strand="+" ref_description="SGN-E425721 [STM-45-B7]">
      <seq>cagaagtagtggagaatcatcattcagcaaagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacggaaacatttgacaggaaaaaggaagccacttatcaactaaacccaaaatttcaatttaatcttcagaagcatctagtccatggtggaatcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgttgaacaatgggagcctgaatataattttggcaactctttttatgacttgcaactgtcgcaaccagtgctttctgctgaaccttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12207" stop="9181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11915" g_stop="11707" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11234" g_stop="11067" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="372" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10400" g_stop="10332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="441" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="535" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9669" i_stop="9554" i_length="116">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9553" g_stop="9481" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="608" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E425721" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11915" e_stop="11707"/>
          <exon e_start="11234" e_stop="11067"/>
          <exon e_start="10400" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9553" e_stop="9481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATA</genome_strand>
        <mrna_strand>CAGAAGT-AGTGGAG-A--ATCATCATTCAGCAA-AGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACGGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCACTTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATCTAGTCCATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTTGAACAATGGGAG....................................................................................................................CCTGAATATAATTTTGGCAACTCTTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300823" ref_strand="+" ref_description="SGN-E300823 [cLEW-8-K8]">
      <seq>agaaattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="12214" stop="9366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11914" g_stop="11707" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11234" g_stop="11067" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="376" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10400" g_stop="10332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="445" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9763" g_stop="9670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="539" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9669" i_stop="9502" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9501" g_stop="9494" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="547" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E300823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11914" e_stop="11707"/>
          <exon e_start="11234" e_stop="11067"/>
          <exon e_start="10400" e_stop="10332"/>
          <exon e_start="9763" e_stop="9670"/>
          <exon e_start="9501" e_stop="9494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCT</genome_strand>
        <mrna_strand>AGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252494" ref_strand="+" ref_description="SGN-E252494 [cLEG-20-C18]">
      <seq>cggtgccctttcatattccacctaccacaaactctatcgtttgaccttcttcctcctcactgcaaaccaaaccccaatgattaaatcttcatcttcaatctgctttttacctgccacttcaaatcaacattcttgattttcataatcagatccaaaatttcataatatttgaatcaaagactgaaactttattgtatcaatctggttcccttcaaatcaagattcttgattcccacaaacatatcaaagattcaccatatttgactccaagactgaaactttcttgtgtatatatcttttcattgttgagaaattgatgtatatgactttgaaggaagcatagtctgttcttttcaagatttgaagagtgaaaaagagacacagaatatgggatcaccatcagcagcagcagcagcaggggtaaaggctagagttttagatattccacttcatgggattggttttgagtttgtagaaatcacaccccacaaaatcactggtcgtcttcctgtgacagataagtgttgtcagccatttaaggtgctgcacggtggagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17370" stop="18529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17670" g_stop="18229" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E252494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17670" e_stop="18229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGCCCTTTCATATTCCACCTACCACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTC</genome_strand>
        <mrna_strand>CGGTGCCCTTTCATATTCCACCTACCACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724413" ref_strand="+" ref_description="SGN-E724413 [FC24AB10]">
      <seq>ggccaaatcggccgattgattcccctaccacaaactctatcgtttgaccttcttcctcctcactgcaaaccaaaccccaatgattaaatcttcatcttcaatctgcatttttacctgccacttcaaatcaacattcttgattttcataatcaaatccaaaatttcataatatttgaatcaaagactgaaactttattgtatcaatctggttcccttcaaatcaagattcttgattcccacaaacatatcaaagattcaccatatttgactccaaaactgaaactttcttgtgtatatatcttttcattgttgacaaattgatgtatatgactttgaaggaagcatagtctgttcttttcaagatttgaagagtgaaaaacacacacagaatatgggatcaccatcagcagcagcaccagcaggggtaaaggctagagttttagatattccacttcatggaattggttttgaatttgtagaaatcacaccccacaaaatcactggtcgtcttcctgtgacagataagtgttgtcagccatttaaggtgctgcacggtggagtttcagctttgatggctgagtctctagcaagtatgggagcacacatggcttctggttttaaaagagtggctggagttcatctaagcatccatcatctcaagagtgctcatttaggggaaccttgtgttttgctgaggctgtgccaatcaatattggcaaaagtattcatgtttggaaagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17384" stop="18707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17691" g_stop="18407" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="744" r_length="720" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E724413" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17691" e_stop="18407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGC-TTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAGAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGG-ACCTTGTG-TTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGGAAGTTTGT</genome_strand>
        <mrna_strand>CTACCACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCATTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAAATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAAACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGACAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAACACACACAGAATATGGGATCACCATCAGCAGCAGCACCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGAATTGGTTTTGAATTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAAAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGGAACCTTGTGTTTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGAAAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727500" ref_strand="+" ref_description="SGN-E727500 [LA14DE09]">
      <seq>cacaaactctatcgtttgaccttcttcctcctcactgcaaaccaaaccccaatgattaaatcttcatcttcaatctgctttttacctgccacttcaaatcaacattcttgattttcataatcagatccaaaatttcataatatttgaatcaaagactgaaactttattgtatcaatctggttcccttcaaatcaagattcttgattcccacaaacatatcaaagattcaccatatttgactccaagactgaaactttcttgtgtatatatcttttcattgttgagaaattgatgtatatgactttgaaggaagcatagtctgttcttttcaagatttgaagagtgaaaaagagacacagaatatgggatcaccatcagcagcagcagcagcaggggtaaaggctagagttttagatattccacttcatgggattggttttgagtttgtagaaatcacaccccacaaaatcactggtcgtcttcctgtgacagataagtgttgtcagccatttaaggtgctgcacggtggagtttcagctttgatggctgagtctctagcaagtatgggagcacacatggcttctggttttaagagagtggctggagttcatctaagcatccatcatctcaagagtgctcatttaggggaccttgtgtttgctgaggctgtgccaatcaatattggcaaaagtattcatgtttgggaagtttgtctctggaagattgatccagctaatgaggaaaaaaagactttgttagcatcatcaagagttactcttaaggtcaacatgtctatacctgaaaatgctnaagatgctgctgtgaatctcaagaaatatgctaagttatgatcatgtttaattgagtttgtttgtaagcaaaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17395" stop="18881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17695" g_stop="18581" g_length="887"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="887" r_length="887" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E727500" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17695" e_stop="18581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAGAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGGACCTTGTGTTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGGAAGTTTGTCTCTGGAAGATTGATCCAGCTAATGAGGAAAAAAAGACTTTGTTAGCATCATCAAGAGTTACTCTTAAGGTCAACATGTCTATACCTGAAAATGCTAAAGATGCTGCTGTGAATCTCAAGAAATATGCTAAGTTATGATCATGTTTAATTGAGTTTGTTTGTAAGCAAAATTGT</genome_strand>
        <mrna_strand>CACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAGAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGGACCTTGTGTTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGGAAGTTTGTCTCTGGAAGATTGATCCAGCTAATGAGGAAAAAAAGACTTTGTTAGCATCATCAAGAGTTACTCTTAAGGTCAACATGTCTATACCTGAAAATGCTNAAGATGCTGCTGTGAATCTCAAGAAATATGCTAAGTTATGATCATGTTTAATTGAGTTTGTTTGTAAGCAAAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726148" ref_strand="+" ref_description="SGN-E726148 [LA10BH04]">
      <seq>cacaaactctatcgtttgaccttcttcctcctcactgcaaaccaaaccccaatgattaaatcttcatcttcaatctgctttttacctgccacttcaaatcaacattcttgattttcataatcagatccaaaatttcataatatttgaatcaaagactgaaactttattgtatcaatctggttcccttcaaatcaagattcttgattcccacaaacatatcaaagattcaccatatttgactccaagactgaaactttcttgtgtatatatcttttcattgttgagaaattgatgtatatgactttgaaggaagcatagtctgttcttttcaagatttgaagagtgaaaaagagacacagaatatgggatcaccatcagcagcagcagcagcaggggtaaaggctagagttttagatattccacttcatgggattggttttgagtttgtagaaatcacaccccacaaatcactggtcgtcttcctgtgacagataagtgttgtcagccatttaggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17395" stop="18513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17695" g_stop="18213" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E726148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17695" e_stop="18213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGC</genome_strand>
        <mrna_strand>CACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCAC-AAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTT-AGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290970" ref_strand="+" ref_description="SGN-E290970 [cLET-8-M6]">
      <seq>ctctatcgtttgaccttcttcctcctcactgcaaaccaaaccccaatgattaaatcttcatcttcaatctgctttttacctgccacttcaaatcaacattcttgattttcataatcagatccaaaatttcataatatttgaatcaaagactgaaactttattgtatcaatctggttcccttcaaatcaagattcttgattcccacaaacatatcaaagattcaccatatttgactccaagactgaaactttcttgtgtatatatcttttcattgttgagaaattgatgtatatgactttgaaggaagcatagtctgttcttttcaagatttgaagagtgaaaaagagacacagaatatgggatcaccatcagcagcagcagcagcaggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17401" stop="18391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17701" g_stop="18091" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E290970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17701" e_stop="18091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGT</genome_strand>
        <mrna_strand>CTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252560" ref_strand="+" ref_description="SGN-E252560 [cLEG-20-A13]">
      <seq>caatgattaaatcttcatcttcaatctgctttttacctgccacttcaaatcaacattcttgattttcataatcagatccaaaatttcataatattcgaatcaaagactgaaactttattgtatcaatctggatcccttcgaatcaagattcttgattcccacaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17444" stop="18211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17744" g_stop="17911" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E252560" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17744" e_stop="17911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACAT</genome_strand>
        <mrna_strand>CAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTCGAATCAAAGACTGAAACTTTATTGTATCAATCTGGATCCCTTCGAATCAAGATTCTTGATTCCCACAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716180" ref_strand="+" ref_description="SGN-E716180 [FB16BD04]">
      <seq>aatcactggtcgtcttcctgtgacagataagtgttgtcagccatttaaggtgctgcacggtggagtttcagctttgatggctgagtctctagcaagtatgggagcacacatggcttctggttttaagagagtggctggagttcatctaagcatccatcatctcaagagtgctcatttaggggaccttgtgtttgctgaggctgtgccaatcaatattggcaaaagtattcatgtttgggaagtttgtctctggaagattgatccagctaatgaggaaaaaaagactttgttagcatcatcaagagttactcttaaggtcaacatgtctatacctgaaaatgctaaagatgctgctgtgaatctcaagaaatatgctaagttatgatcatgtttaattgagtttgtttgtaagcaaaattgtagagagtaacaagacaataatgcagagttatgcaaaacatgttgtaaacccctttgacattttctgtcctgacacgtttttatgaaaaagtacccaaaaaagagtgtaatctacattatctggagtagttactaatttctttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="17861" stop="19025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18161" g_stop="18723" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18724" i_stop="18796" i_length="73">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18797" g_stop="18808" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="575" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E716180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18161" e_stop="18723"/>
          <exon e_start="18797" e_stop="18808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAGAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGGACCTTGTGTTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGGAAGTTTGTCTCTGGAAGATTGATCCAGCTAATGAGGAAAAAAAGACTTTGTTAGCATCATCAAGAGTTACTCTTAAGGTCAACATGTCTATACCTGAAAATGCTAAAGATGCTGCTGTGAATCTCAAGAAATATGCTAAGTTATGATCATGTTTAATTGAGTTTGTTTGTAAGCAAAATTGTAGAGAGTAACAAGACAATAATGCAGAGTTATGCAAAACATGTTGTAAACCCCTTTGACATTTTCTGTCCTGACACGTTTTTATGAAAAAGTACCCAAAAAAGAGTGTAATCTACATTATCTGGAGTAGTTACTAATTTCTTTGATTTGTGGTTCACATTGCATTTACCCCTAATATGTTTCTTAAATTTTACTTGCACTAATCATACTACATCAGGCTAAAAGAAGA</genome_strand>
        <mrna_strand>AATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAGAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGGACCTTGTGTTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGGAAGTTTGTCTCTGGAAGATTGATCCAGCTAATGAGGAAAAAAAGACTTTGTTAGCATCATCAAGAGTTACTCTTAAGGTCAACATGTCTATACCTGAAAATGCTAAAGATGCTGCTGTGAATCTCAAGAAATATGCTAAGTTATGATCATGTTTAATTGAGTTTGTTTGTAAGCAAAATTGTAGAGAGTAACAAGACAATAATGCAGAGTTATGCAAAACATGTTGTAAACCCCTTTGACATTTTCTGTCCTGACACGTTTTTATGAAAAAGTACCCAAAAAAGAGTGTAATCTACATTATCTGGAGTAGTTACTAATTTCTTT.........................................................................GAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331958" ref_strand="+" ref_description="SGN-E331958 [cTOD-16-K18]">
      <seq>tggaagccattaatgcacaagagatcatacacaaagaaggctgagggttagcagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatgggtgcatcaggcatcaatgactttcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25642" stop="29987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25942" g_stop="26082" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="235" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="356" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="430" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="507" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="544" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="630" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29687" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="668" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E331958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25942" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCAT</genome_strand>
        <mrna_strand>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGGTGCATCAGGCATCAATGACTTTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722583" ref_strand="+" ref_description="SGN-E722583 [FC17CG12]">
      <seq>aatcggccgaattgatacacaaagaaggccgataaaaagcagagaaacatggaatctggaaagaagagtactctggatctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaaaagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25691" stop="30305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25953" g_stop="26082" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="223" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="344" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="418" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="495" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="532" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="618" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="678" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="30005" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="808" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E722583" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25953" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCA</genome_strand>
        <mrna_strand>AATCGGC-CGAATTGATACACAAAGAAGGCCGATAAAAAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGATCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAAAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364350" ref_strand="+" ref_description="SGN-E364350 [cLPP-20-P6]">
      <seq>gagatcatacacaaagaaggctgagggttagcagagaaacatggaatctggaaagaagagtgctctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattttggggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcaaaatgggaagggtttccttcatgaacaaaagcacctgcttgcagtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacaagttctgaagaaactttaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25662" stop="29194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25962" g_stop="26082" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="215" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="336" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="410" r_length="74" r_score="0.905"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="0.86"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28894" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="484" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E364350" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25962" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTT</genome_strand>
        <mrna_strand>GAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTGCTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTTTGGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAAAATGGGAAGGGTTTCCTTCATGAACAAAAGCACCTGCTTGCA...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAAGTTCTGAAGAAACTTTAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408413" ref_strand="+" ref_description="SGN-E408413 [PPI-11-C23]">
      <seq>gaaggctgagggctagcagagaaacatggaatctggaaagaggagtgctcttgctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgtaagtatggaataacatttgagcagttggcttcttggtggagtgagaagcctgccaaacttgctggtctaacgactaangggggaattgctgtangtaaccaagcagatatagttgtctgggagccagacatggnagtcgacctggataatgactaccctgtacatattaagcaccctagtatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25677" stop="32547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25977" g_stop="26082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="200" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27075" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="211" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27076" i_stop="30818" i_length="3743">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="367" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="478" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="589" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="688" r_length="99" r_score="0.919"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32520" g_stop="32528" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="697" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E408413" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25977" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27075"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCC</genome_strand>
        <mrna_strand>GAAGGCTGAGGGCTAGCAGAGAAACATGGAATCTGGAAAGAGGAGTGCTCTTGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGTAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCTGGTCTAACGACTAAN....................................................................................................................................................................................................................................GGGGGAATTGCTGTANGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGNAGTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422100" ref_strand="+" ref_description="SGN-E422100 [STM-34-I7]">
      <seq>gaaggctgagggctagcagagaaacatggaatctggaaagaggagtgctcttgctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgaaggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25677" stop="32136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25977" g_stop="26082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="200" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27075" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="211" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27076" i_stop="30818" i_length="3743">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="367" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="478" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31807" g_stop="31836" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="508" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E422100" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25977" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27075"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGG</genome_strand>
        <mrna_strand>GAAGGCTGAGGGCTAGCAGAGAAACATGGAATCTGGAAAGAGGAGTGCTCTTGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAAGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481070" ref_strand="+" ref_description="SGN-E481070 [cSTD-16-I16]">
      <seq>gaaggctgagggttagcagagaaacatggaatctggaaagaggagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaagggagaattatatctgttgttgctgaagagaattggcatgtaaattcttcgtttaccacagtggtcaattatggggagtctgttgtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcangcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctactagatcttgatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25677" stop="30252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25977" g_stop="26082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="200" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="321" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="395" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="472" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="509" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="595" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="655" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="29952" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="732" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E481070" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25977" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="29952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAA</genome_strand>
        <mrna_strand>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAGGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGGAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTCGTTTACCACAGTGGTCAATTATGGGGAGTCTGTTGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCANGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTACTAGATCTTGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478894" ref_strand="+" ref_description="SGN-E478894 [cSTD-7-F21]">
      <seq>aaggctgagggctagcagagaaacatggaatctggaaagaggagtgctcttgctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaaggaagaatcatatctgttgttgctgaagagaattggcatgtaaattcttggtttaccacagtggtcaattatggggagtccgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcangggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25678" stop="30198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25978" g_stop="26082" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="199" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="320" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="394" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="471" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="508" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="594" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="654" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="29898" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="677" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E478894" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25978" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="29898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCG</genome_strand>
        <mrna_strand>AAGGCTGAGGGCTAGCAGAGAAACATGGAATCTGGAAAGAGGAGTGCTCTTGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATCATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTGGTTTACCACAGTGGTCAATTATGGGGAGTCCGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCANGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410303" ref_strand="+" ref_description="SGN-E410303 [PPI-16-L7]">
      <seq>gctgagggttagcagagaaacatggaatctggaaagaggagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattcttggtttaccacagtggtcaattatggggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaagggagggtctacgtggatgttggtttctggggaagtttggttccagaaatgcagaaaatgcaagttctctggaagacttctaaatgcaggggttctggggatgaagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25681" stop="29666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25981" g_stop="26082" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="196" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="317" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="391" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="468" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="505" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="589" r_length="84" r_score="0.930"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29654" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="594" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E410303" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25981" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTT</genome_strand>
        <mrna_strand>GCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAGGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTGGTTTACCACAGTGGTCAATTATGGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAAGTTTGGTTCCAG-AAATGCAGAAAATGCAAGTTCTCTGG-AAGACTTCTAAATGCAGGGGTTCTGGGGATGAAG...............................................................................................................................................................................................................................................................................................TCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339842" ref_strand="+" ref_description="SGN-E339842 [cTOF-3-I1]">
      <seq>gagggttagcagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25684" stop="30262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25984" g_stop="26082" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="193" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="314" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="388" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="465" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="502" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="588" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="648" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="29962" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="735" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E339842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25984" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="29962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTG</genome_strand>
        <mrna_strand>GAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704386" ref_strand="+" ref_description="SGN-E704386 [FA24AF02]">
      <seq>ggttagcagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgtagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctncagaccaggcctgcttcaatggaagaagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25687" stop="30328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25987" g_stop="26082" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="311" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="385" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="462" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="499" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="585" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="645" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="794" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E704386" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25987" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT</genome_strand>
        <mrna_strand>GGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGTAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTNCAGACCAGGCCTGCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361462" ref_strand="+" ref_description="SGN-E361462 [cLPP-6-L24]">
      <seq>ggttagcagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattttggggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25687" stop="29193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25987" g_stop="26082" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="311" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="385" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28893" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="458" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E361462" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25987" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACT</genome_strand>
        <mrna_strand>GGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTTTGGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328922" ref_strand="+" ref_description="SGN-E328922 [cTOC-24-N19]">
      <seq>gttagcagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcangcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagaaccctacttgttcatgccgaagtgctagtagatcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25688" stop="30247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25988" g_stop="26082" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="189" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="310" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="384" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="461" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="498" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="584" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="644" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="29947" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="716" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E328922" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25988" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="29947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGAT</genome_strand>
        <mrna_strand>GTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCANGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGAACCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342518" ref_strand="+" ref_description="SGN-E342518 [cTOF-8-D10]">
      <seq>gttagcagagaaaatggaatctggaaagaaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25688" stop="28832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25988" g_stop="26082" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="189" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="310" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28532" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="335" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E342518" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25988" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGAGAAACATGGAATCTGGAAAG-AAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGA</genome_strand>
        <mrna_strand>GTTAGCAGAGAAA-ATGGAATCTGGAAAGAAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328181" ref_strand="+" ref_description="SGN-E328181 [cTOC-21-A2]">
      <seq>ttagcagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcangcatcaatgactttcccatgacaactgcatcccacataaaagaggcactcccaactctggctcgatacaaaagacccctacttgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25689" stop="30224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25989" g_stop="26082" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="188" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="309" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="383" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="460" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="497" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="583" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="643" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="29924" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="692" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E328181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25989" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="29924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATG</genome_strand>
        <mrna_strand>TTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCANGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAA......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407835" ref_strand="+" ref_description="SGN-E407835 [PPI-8-P9]">
      <seq>cgagggaaacatggaatctggaaagaggagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaagggagaattatatctgttgttgctgaagagaattggcatgtaaattcttcgtttaccacagtggtcaattatggggagtctgttgtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttctggccgaagtgctactagatcttgatggaaaagtggagctggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25692" stop="30266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25992" g_stop="26082" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="185" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="306" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="380" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="457" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="494" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="580" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="640" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="29966" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="731" r_length="91" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E407835" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25992" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="29966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGG</genome_strand>
        <mrna_strand>CGAGGGAAACATGGAATCTGGAAAGAGGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGGAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTCGTTTACCACAGTGGTCAATTATGGGGAGTCTGTTGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCTGGCCGAAGTGCTACTAGATCTTGATGGAAAAGTGGAGCTGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359758" ref_strand="+" ref_description="SGN-E359758 [cLPP-5-F8]">
      <seq>cagagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattttggggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcatgaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25693" stop="29177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25993" g_stop="26082" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="184" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="305" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="379" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28877" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="436" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E359758" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25993" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTG</genome_strand>
        <mrna_strand>CAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTTTGGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCATGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706513" ref_strand="+" ref_description="SGN-E706513 [FA30AG01]">
      <seq>gagaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcctcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaagagctcatctccatattgttcatctatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25695" stop="30730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25995" g_stop="26082" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="182" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="303" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="377" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="454" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="491" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="577" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="637" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="786" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30333" g_stop="30430" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="884" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E706513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25995" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTG</genome_strand>
        <mrna_strand>GAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCCTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAAGAGCTCATCTCCATATTGTTCATCTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467524" ref_strand="+" ref_description="SGN-E467524 [cSTB-49-A14]">
      <seq>agaaacatggaatctggaaagaggagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagcgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatggaacaatttctggtgcagttgagataaaggaagggagaattatatctgttgttgctgaagagaattggcatgtaaattcttcgtttaccacagtggtcaattatggggagtctgttgtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25696" stop="29992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25996" g_stop="26082" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="181" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="302" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="376" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="453" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="490" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="576" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29692" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="619" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E467524" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25996" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAA</genome_strand>
        <mrna_strand>AGAAACATGGAATCTGGAAAGAGGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGCGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGAACAATTTCTGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGGAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTCGTTTACCACAGTGGTCAATTATGGGGAGTCTGTTGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321486" ref_strand="+" ref_description="SGN-E321486 [cTOB-23-L21]">
      <seq>agaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggaaggtctacgtggatgttggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25696" stop="29508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25996" g_stop="26082" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="181" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="302" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="376" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="453" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="490" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29282" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="496" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E321486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25996" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCT</genome_strand>
        <mrna_strand>AGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAAGGTCTACGTGGATGTTG........................................................................GTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333169" ref_strand="+" ref_description="SGN-E333169 [cTOD-19-L22]">
      <seq>agaaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25696" stop="29193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25996" g_stop="26082" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="181" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="302" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="376" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28893" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="449" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E333169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25996" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACT</genome_strand>
        <mrna_strand>AGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708091" ref_strand="+" ref_description="SGN-E708091 [FA34DC12]">
      <seq>catcatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25699" stop="30668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25998" g_stop="26082" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="179" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="300" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="374" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="451" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="488" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="574" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="634" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="783" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30333" g_stop="30368" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="819" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E708091" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25998" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTC</genome_strand>
        <mrna_strand>CATCATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361396" ref_strand="+" ref_description="SGN-E361396 [cLPP-6-O10]">
      <seq>aaacatggaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatgggacaatctccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattttggggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25698" stop="28834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25998" g_stop="26082" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="179" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="300" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28534" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="327" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E361396" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25998" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAG</genome_strand>
        <mrna_strand>AAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGGACAATCTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTTTGGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361859" ref_strand="+" ref_description="SGN-E361859 [cLPP-12-B22]">
      <seq>acatggaatctggaaagaagagtacgctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatgggacaattccccgtgcagctgatataaaagaaggaagaattatatctgtcgttgctgaagagaattggcatgtaaattctcggtctaccacagtggtcaatcttggggagtacgtggtcatgcctcgattcattgatgtgcatgcccatctcgatgatcctggaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25700" stop="28837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26000" g_stop="26082" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="177" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="298" r_length="121" r_score="0.901"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28537" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="328" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E361859" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26000" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATC</genome_strand>
        <mrna_strand>ACATGGAATCTGGAAAGAAGAGTACGCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGGACAATTCCCCGTGCAG.......................................................................................................CTGATATAAAAGAAGGAAGAATTATATCTGTCGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTCTACCACAGTGGTCAATCTTGGGGAGTACGTGGTCATGCCTCGATTCATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTCGATGATCCTGGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323431" ref_strand="+" ref_description="SGN-E323431 [cTOC-7-C22]">
      <seq>catggaatctggaaagaagagggctctggggggtgataccactattcctttctttcctgttatactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatattgctccatcaacagtttctgaagaaactttaaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25701" stop="29195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26001" g_stop="26082" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="177" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="298" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="372" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28895" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E323431" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26001" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAATCTGGAAAGAAGAGTACTCTGG-CTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTA</genome_strand>
        <mrna_strand>CATGGAATCTGGAAAGAAGAGGGCTCTGGGGGGTGATACCACTATTCCTTTCTTTCCTGTTATACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATATTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701484" ref_strand="+" ref_description="SGN-E701484 [FA16AD10]">
      <seq>atcgaatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctatggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25702" stop="30730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26002" g_stop="26082" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="175" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="296" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="370" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="447" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="484" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="570" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="630" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="779" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30333" g_stop="30430" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="877" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E701484" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26002" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTG</genome_strand>
        <mrna_strand>ATCGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTATGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725171" ref_strand="+" ref_description="SGN-E725171 [FC26BB10]">
      <seq>aatctggaaagaagagtactctggctctgctaccactcttcctttctttcctgttttactttgatttctcaaaaaagcttccctcaagtgactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgacataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaaaagactttaaaacttaaggtacaggctgcaaaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcaaaaaatacaatttctctgaaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="25706" stop="29986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26006" g_stop="26082" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26868" g_stop="26961" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="171" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="292" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="366" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="443" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="480" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="566" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29650" g_stop="29686" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="603" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E725171" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26006" e_stop="26082"/>
          <exon e_start="26868" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAGGTTTGATCTTTATGTTTTTTCTTCTTCTTAAATATACCATTGTTTTTTTTCTTGTGCAGAAAATCCCTTTTTGTAGGATGTGAAAGTGGGGTTGGGGGTGGTGAGGGGAGGATGATAAAAATAAAATTTATTGGTTACCCTTTTTCAAGAATGAGGAAAAGATTAATCTTTCTTAACATTCATAAAGACACACACTCACTGAAATCTAGACTGTGTTACAATGAGATATGTTGTTGTTGATTATGTATTTATTGTACATTTGTGTGATTTTGTGTTTGGATGGTTTGTTTGTGGACAGAGTTTTTTTTTTCCAAATAAGGGAGCTTTTTGTTTTTTTTTAAGAGATTTGATGATGGAATCTTAACAAATTCCAGAAAGCCTCTTCATGAAGCACTTGTCAAAAAAGTTTCTTCATGAAGTTCTTGCATGTGAAATGCTTAAGTACTGTAGATCTGGATATCCATTTTAGCATGTTAGTTATATGATGGAAAGACTGATGGAAAAAGATTTGCCATTAGAAATAGGGAAGGGATTCTTTGTTGGATTCCTGAGATTTTACTGCGAAACATATAAGAAATTTTCTGAATAAAAAAAAAAGTTGGTCAAATTTCAGCATGTCTACATGCAGTACATCTAAGAGCCTTGAGGCAAGCATATGTAATTTAACCTTTGCTAATAGCCATCTACCAGTTTTTATGCTTCATACTATGCTGTACTCAGGTACTATATTTTTGTTCTATAACTTTTGAATGATCCTCAAGAAAGTTTATGGTTTTATACCTCAGCTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCA</genome_strand>
        <mrna_strand>AATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGACATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAAAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAAAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAAAAAATACAATTTCTCTGAAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363827" ref_strand="+" ref_description="SGN-E363827 [cLPP-3-H22]">
      <seq>gactgcagccttctgcctcataatcactattggatatccagcaaacgtattgtgactccaaatgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattttggggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="26580" stop="29979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26880" g_stop="26961" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="203" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="277" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="354" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="391" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="477" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29650" g_stop="29679" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="507" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E363827" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26880" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGAC</genome_strand>
        <mrna_strand>GACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAATGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTTTGGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346083" ref_strand="+" ref_description="SGN-E346083 [cTOF-24-L6]">
      <seq>actattggatatccagcaaacgtattgtgactccaaacgggacaatttccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcagggcttggtggttctgctgaaggagctcatctccatattgntcatctatctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="26605" stop="30735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26905" g_stop="26961" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="178" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="252" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="329" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="366" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="452" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="661" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30333" g_stop="30432" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="761" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E346083" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26905" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGAT</genome_strand>
        <mrna_strand>ACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCAGGGCTTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGNTCATCTATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312956" ref_strand="+" ref_description="SGN-E312956 [cTOA-14-O11]">
      <seq>tccggtgcagttgagataaaggaaggaagaattatatctgttgttgctgaagagaattggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="26762" stop="29153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26952" g_stop="26961" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="131" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="205" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28821" g_stop="28853" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="238" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E312956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26952" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTA</genome_strand>
        <mrna_strand>TCCGGTGCAG.......................................................................................................TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482409" ref_strand="+" ref_description="SGN-E482409 [cSTD-22-I3]">
      <seq>gtgcagttgagataaaggaagggagaattatatctgttgttgctgaagagaattggcatgtaaattcttcgtttaccacagtggtcaattatggggagtctgttgtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagaaactttaaaacttaaggtccaggctgcagaaaggaggggctacgtggatgttggtttctggggaggtttggttccccaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcacggggtctgggattgaaatcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="26762" stop="30000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26956" g_stop="26961" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27065" g_stop="27185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="127" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="278" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="315" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="401" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29650" g_stop="29700" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="452" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E482409" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26956" e_stop="26961"/>
          <exon e_start="27065" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGTTTGTTGAACTAAGTTTAAAATTTCTTTGATTTCAGGGAAATTATTAGCTACTTGTTCTCATTCCTGGTGACAAATTGTTTCTCCTGATGTGATGTAAACAGTTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCC</genome_strand>
        <mrna_strand>GTGCAG.......................................................................................................TTGAGATAAAGGAAGGGAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTTCGTTTACCACAGTGGTCAATTATGGGGAGTCTGTTGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAAACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTCCAGGCTGCAGAAAGGAGGGGCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCCCAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCACGGGGTCTGGGATTGAAA...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333271" ref_strand="+" ref_description="SGN-E333271 [cTOD-20-C21]">
      <seq>tggcatgtaaattctcggtttaccacagtggtcaattatagggagtctgtggtcatgcctggatttattgatgtgcatgcccatcttgatgatcctggaagatcagaatgggaagggtttccttcaggaacaaaagcagctgctgcaggtggagtaaccacattagttgacatgcctcttaatagtgctccatcaacagtttctgaagagactttaaaacttaaggtacaggctgcagaagggagggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagcaaacnaaggggtgatagcatcaccgttgaaacttgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="26812" stop="31163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27112" g_stop="27185" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28508" g_stop="28581" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="148" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28821" g_stop="28897" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="225" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29168" g_stop="29204" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="262" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="348" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="408" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="557" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="684" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30819" g_stop="30863" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="728" r_length="44" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E333271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27112" e_stop="27185"/>
          <exon e_start="28508" e_stop="28581"/>
          <exon e_start="28821" e_stop="28897"/>
          <exon e_start="29168" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGTGTAAGATAAAACTCTATCCTCGTGTTAGTTATGATTTCCCATGTTGTTTCTTAAATTTATGTTAAATCATGAAGAACTTTAAGCAGATTTAGAAAACCTAAACAATTGTTTAGGCCTATGCACTTAATAGCAGCAGATGGGAATTGCTGTGTGGAGAGAAAATTCAAACCTTTTAATGAGAAATTTGAGATATTATTTCACAAGAAAACATGGTATCATAGCTCTTAACTATTGGAAATTCCTTACTGATAAAGGTGTCAAACCTGAATAAGAGTTAATTTTGATGTTCTCTTTACGTTAAGCATTTACAACTCTGGTGTAATTGATACAGTGTGTGCCACTTATATTTAAGCATAATTTGCATTCACTGGAAATTAAGAGGGGGAAGTATTATCATCTTGGAGGTGTTGATGTCTTTGGATTGTCCACACCATGAGTTTTGATCAAGTGTGATGTCTATATACTAATTTGGATTCATTGAATTCCTTAGTATGGAGTTCCATATTTATTTTTAAAACCTTTAACTTCACTGTAAGAGCAGGGTACTTCTTTAACTGATGGAACCTTGAAAGGCTTTCAGATGAGCATAACATGAATCTTTTAGGCAAAAAATGGAAGGGCTTATTGTCATCATCTAGCCACCTGTAACCCAACAAAGCTGTCTGTTGGAAAGAATATGCTGGGTCCTGAAGCATGCTGTTGGTCAAAACGACTTCCTTGATAAGTTGAACTAGGTTTAAAAGTTTGCAGTTATTAGGCAATCAACCTTTTGGTTTTATGGTTCAAGGATGTTGCTTTGTATCAGCAACCAATCACTCATACTGTCGTACATACAATTGCACTTGCACGAGTACCTGAAAACTTAAGGCCGTTTCCACTTACCCTGTCTTACTTATATCCAGAATACCTGCTCTAGTTCTATGAAGTATTTTCTCTGTCATAGACTTCCTAGCTCCAATACTAATCTACAAAACAAATCACAATTCTTCCAGGATGTATGCTATTTCTTTATGAGACTTCATCTCACAAATAGCTGATGATTGAGACTCCAACTAGACCCCAACTAGTATGTCAGAAGTTCGAGTTGTGTGGAAGATTTAGCATAATACTATCAATCCTCCCAGCGAGTGTGGGAGTAAAAATAAAGTAGAATCTTTAGCAGAGTAGTGATGGGAGTCTAAAATCATATACCTGGCTTGTGTTAGTTCTGGCACGATTTAGAGGACTTGAGCTTAGTTTTTGTTTCCTTGCCAATATCAAAACTAGATGATAAGGTTTAACTCATAAAGCCTTGTTCCTAATTATTTTTTTGTCCATTCTAGGCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAGGTACATGGATTCAAATTCAAGCTCGTCACATGTAACTTAAACTATTCGAGATGGGTAGCTCTGAATGTGGATAATTATGACATTAATATGAGTTTGTTTCTTTTGAACTTTTTTTAAAATATTTGTAATTTGATGTTGTAGCTGCCTGCCTTATTTTGCTGGATTCAACCTTCAGTGTTCATATGTGTGGGATTACGCAGAACCTAATATCGTGTTTCATATTACAATGTTCTTTGCAGGTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAGGTAAGCATGTCATATAGATTTTTGATATATTTTGCAGACCATTTTGACAGAGTAAAACTTACCAAAGGAAACTATTGTTTCTCGCGTGATTATTAGTGCATGTGTTTTTGTTTTTGTTGAGGTCATCTGGTTTTCTAATATGGTGCATCTGTAAGGAGTTTATGGCATTCAAACTAATGAACATATAAAAATGCTAACAGAAGCTCCTGGATTCATATAGGTGTAGTCATATTGAACGACATATAATCAGGGTTACTGTTGTTTTGGCAGGTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCC</genome_strand>
        <mrna_strand>TGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG...............................................................................................................................................................................................................................................GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG..............................................................................................................................................................................................................................................................................GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAG-CAAACNAAGGGGTGATAGCATCACCGTTGAAACTTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364928" ref_strand="+" ref_description="SGN-E364928 [cLPP-17-I21]">
      <seq>gggtctacgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatacaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctactagatcttgatgaaaaagtggagctggaggatggggtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="28887" stop="31393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29187" g_stop="29204" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="104" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="164" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="313" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="440" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="596" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31068" g_stop="31093" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="622" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E364928" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29187" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTACGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTC</genome_strand>
        <mrna_strand>GGGTCTACGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTACTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407917" ref_strand="+" ref_description="SGN-E407917 [PPI-9-C8]">
      <seq>cgtggatgttggtttctggggaggtttggttccagaaaatgcagaaaatgcaagttctctggaaagacttctaaatgcaggggttctgggattgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctactagatcttgatggaaaagtggagctggaggatggggtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgaaggtgacttcttgaaagcatggggtggcatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="28976" stop="31469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29194" g_stop="29204" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72">
            <donor d_prob="0.334" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29277" g_stop="29362" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="97" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="157" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="306" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="433" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="589" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31068" g_stop="31169" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="691" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E407917" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29194" e_stop="29204"/>
          <exon e_start="29277" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGATGTTGGTATGATTGTGAAGCTTTATTCTTGATTGATTGATGTTGTAGTAAGACGGTACTTACTCTTTGTATTGACAGGTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCT</genome_strand>
        <mrna_strand>CGTGGATGTTG........................................................................GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATGCAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTACTAGATCTTGATGGAAAAGTGGAGCTGGAGGATGGGGTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAAGGTGACTTCTTGAAAGCATGGGGTGGCATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328196" ref_strand="+" ref_description="SGN-E328196 [cTOC-21-E22]">
      <seq>ttgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaaggggggcaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29344" stop="32218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29357" g_stop="29362" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="66" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="215" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="342" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="498" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="609" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="721" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32146" g_stop="32157" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="733" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E328196" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29357" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAA-GGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCT</genome_strand>
        <mrna_strand>TTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGG....................................................................................................................................................................................................................................GGGGCAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327935" ref_strand="+" ref_description="SGN-E327935 [cTOC-22-H15]">
      <seq>ttgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatganggagacttcttgaaagcatggngtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaaatacatatgagcagttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29344" stop="32169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29357" g_stop="29362" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="66" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="215" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="342" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="498" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="609" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31807" g_stop="31869" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="672" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E327935" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29357" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCT</genome_strand>
        <mrna_strand>TTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGANGGAGACTTCTTGAAAGCATGGNGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAAATACATATGAGCAGTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328197" ref_strand="+" ref_description="SGN-E328197 [cTOC-21-E24]">
      <seq>ttgaagtcttttatggtgccatcaggcatcaatgactttcccatgacaactgcatcccacataaaggaggcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctagtagatcttgatgaaaaagtggagctggaggatggggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcgatggaagaggctgctatcaatcacctcataacactgtcaaaggacgctagggctggtggttctgctgaaagagctcatctccatattgttcatctatctgatgctagaacttcactatacctcattaaggaagcctaacataggggtgatagcatcaccgctgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaaattctgaccaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29344" stop="31402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29357" g_stop="29362" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287">
            <donor d_prob="0.477" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29650" g_stop="29709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="66" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="215" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="342" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="498" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31068" g_stop="31098" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="529" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E328197" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29357" e_stop="29362"/>
          <exon e_start="29650" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGTATACTGGCAAACATGCATGCACTAGACCTCAGATTGAGCATTCTGTTCCTTTTCAGTTTTTGATATCTTAGCTGTCTTGAAGTCAAGCAAAGATTGATGACATATCCAATATACTAAATACAAAACATTTTTGGACAAGTTAATAACTTCCCAATTATTACCTTACGAAGTGACAATGTAACTTTAATGTTTGAGAGATCATTTTGGGCATCTTTTGTAGCACTCTACTATGTGATTTCAATTAATTTGTCACATTTATAATTGGACATGTTTTCCTTTTTGCAGTCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACC</genome_strand>
        <mrna_strand>TTGAAG...............................................................................................................................................................................................................................................................................................TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCGAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCACCTCATAACACTGTCAAAGGACGCTAGGGCTGGTGGTTCTGCTGAAAGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTATACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCTAACATAGGGGTGATAGCATCACCGCTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAATTCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408421" ref_strand="+" ref_description="SGN-E408421 [PPI-11-E15]">
      <seq>catcaatgactttcccatgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctactagatcttgatggaaaagtggagctggaggatggggtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttggtctacccgcgacatggacacatgggcgtaagtatggaataacatttgagcagttggcttcttggtggagtgagaagcctngccaacttgctggtctaaccgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29370" stop="32215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29670" g_stop="29709" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="189" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="316" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="472" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="583" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31807" g_stop="31915" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="693" r_length="110" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E408421" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29670" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATGACTTTCCCATGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAA-CGACTA</genome_strand>
        <mrna_strand>CATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTACTAGATCTTGATGGAAAAGTGGAGCTGGAGGATGGGGTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCTACCCGCGACATGGACACATGGGCGTAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTNGCCAACTTGCTGGTCTAACCGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408671" ref_strand="+" ref_description="SGN-E408671 [PPI-11-H14]">
      <seq>tgacaactgcatcccacataaaggaagcactcccaactctggctcgatacaaaagacccctacttgttcatgccgaagtgctactagatcttgatggaaaagtggagctggaggatggggtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcaccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29387" stop="32213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29687" g_stop="29709" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29876" g_stop="30024" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="172" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="299" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="455" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="566" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31807" g_stop="31913" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="673" r_length="107" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E408671" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29687" e_stop="29709"/>
          <exon e_start="29876" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAACTGCATCCCACATAAAGGTGTGTAATCTTTCTTCTTTTTTTTCCTTCTCAAGATATATTTTCTTCTGTTTATTTTTGTCAATCATTCTGCAGCAATTATGTAGGTATGACTTCACAGATGGTCATTAGAACCAACCTTATTAGACTCTCTACTATTCTTATGATTTAATGCTTAACTACGCAGGAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGAC</genome_strand>
        <mrna_strand>TGACAACTGCATCCCACATAAAG......................................................................................................................................................................GAAGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTACTAGATCTTGATGGAAAAGTGGAGCTGGAGGATGGGGTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCACCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718578" ref_strand="+" ref_description="SGN-E718578 [FC05AC12]">
      <seq>attggcggccaaatcggccgaattgggtagagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29658" stop="32958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29942" g_stop="30024" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="206" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="362" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="473" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="584" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="683" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32520" g_stop="32658" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="822" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E718578" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29942" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTAC</genome_strand>
        <mrna_strand>ATTGGCGGCCAAATCG-GC-CGA--ATTGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404438" ref_strand="+" ref_description="SGN-E404438 [PPC-14-C5]">
      <seq>agggaaaagtggagctggaggacggggtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaagctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaagagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgaaggtgacttcttgaaagcatggagtggcatatcttctttacagtttgttctacccgcgacatggacacatggggcgtaaatatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29646" stop="32150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29946" g_stop="30024" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="206" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="362" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="473" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="518" r_length="45" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E404438" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29946" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACAT-GGGCGTAAGTATGGAAT</genome_strand>
        <mrna_strand>AGGGAAAAGTGGAGCTGGAGGACGGGGTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAAGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAAGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAAGGTGACTTCTTGAAAGCATGGAGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGGCGTAAATATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624318" ref_strand="+" ref_description="SGN-E624318 [GI|24745930]">
      <seq>gtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcaccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacaagcctattggttgtccctttgacattcttggagacgaccacatggcatgacacatgtagatggaattgataacttcatcattcagatcaaagccaaactttgcatggatctaagttgttcatcgtcttcactcttcttttaggtgtgcaacagggctggagtgtatataatctgttgcaggcccttagttgatagtcattggatatttaactctgtagaaaataaatatttcaattgaagctgaaagctcttgttgttgatgaagtacacattaagaattaaattcatcttcataatttacaaatgccatgagaaactaatatcaacttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29672" stop="33367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29972" g_stop="30024" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="180" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="336" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="447" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="558" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="657" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="806" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32741" g_stop="33066" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1127" r_length="321" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1128" polyA_stop="1145"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E624318" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>1132</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29972" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32741" e_stop="33066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCAT-AGTTACAAATTCCATGAGAAACTAATATCAACTTA</genome_strand>
        <mrna_strand>GTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCACCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACAAGCCTATTG........................................................................--GT--TG-TCC--CTTTGACAT-TCTTGGAGACGACCACATGGCATGACACATGTAGATGGAATTGATAACTTCATCATTCAGATCAAAGCCAAACTTTGCATGGATCTAAGTTGTTCATCGTCTTCACTCTTCTTTTAGGTGTGCAACAGGGCTGGAGTGTATATAATCTGTTGCAGGCCCTTAGTTGATAGTCATTGGATATTTAACTCTGTAGAAAATAAATATTTCAATTGAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGAATTAAATTCATCTTCATAATTTACAAATGCCATGAGAAACTAATATCAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559220" ref_strand="+" ref_description="SGN-E559220 [18683]">
      <seq>gtcgagaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcaccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaacgagggaaatcatgcttctcaagcattgtgctctcccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29672" stop="32936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29972" g_stop="30024" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="180" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="336" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="447" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="558" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="657" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32520" g_stop="32636" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="775" r_length="118" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E559220" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29972" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCA-TGCGCTCTCCCAATT</genome_strand>
        <mrna_strand>GTCGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCACCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAACGAGGGAAATCATGCTTCTCAAGCATTGTGCTCTCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730799" ref_strand="+" ref_description="SGN-E730799 [LA25BA02]">
      <seq>cgaatgctagatcatactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29677" stop="33088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29976" g_stop="30024" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="176" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="332" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="443" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="554" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="653" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="802" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32766" g_stop="32783" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="820" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32784" i_stop="32879" i_length="96">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32880" g_stop="32884" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="825" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E730799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29976" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="32783"/>
          <exon e_start="32880" e_stop="32884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTG</genome_strand>
        <mrna_strand>CGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATG................................................................................................GCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559230" ref_strand="+" ref_description="SGN-E559230 [18694]">
      <seq>agaatgctagatcatactctacatatctcaagaccaggcctcgcttcaatgtaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcaccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29676" stop="32527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29976" g_stop="30024" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="177" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="333" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="444" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="555" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32146" g_stop="32226" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="636" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E559230" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29976" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCT-GCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCT</genome_strand>
        <mrna_strand>AGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTCGCTTCAAT....................................................................................................................................................................................................................................................................................................................GTAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCACCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711005" ref_strand="+" ref_description="SGN-E711005 [FA57CF10]">
      <seq>atactctacatatctcaagaccaggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctactatatccgcatacatgggatcaagactctctgggatagttttggcaacctttgtgggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="29689" stop="32881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29989" g_stop="30024" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="163" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="319" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="430" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="541" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="640" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32520" g_stop="32581" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="702" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E711005" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29989" e_stop="30024"/>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCTACATATCTCAAGACCAGGCCTGCTTCAATGTAAATATATTACCTTTTATCATATGCTATAATCTAGAGTAGATTTGTGTTGAGATTACATGTCATTCTTCTTGTGTTTCCGGTTGTGTCACATTCTTAACATGTCTGTATGTATTTCCAAGAGGTGTGACAAACATTTCTTTCTGTACTTTCACCTGGTGCATGTTTTAATGTTTTTAAATTTTGTCAAAACGTTCCTCTCTCACTATGATTTCTCTTTCTTATCCCTCTCTCTTCTCTCTTACATCATCTATTTTCTACTGTTTTTTCAAATCGTATTACCTTTTGAAATTTTTGTTCTTTAACAGGGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGG</genome_strand>
        <mrna_strand>ATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT....................................................................................................................................................................................................................................................................................................................GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................ACTATATCCGCATACATGGGATCAAGACTCTCTGGGATAGTTTTGGCAACCTTTGTGGGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363993" ref_strand="+" ref_description="SGN-E363993 [cLPP-16-K6]">
      <seq>ggcctgcttcaatggaagaggctgctatcaatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaacttttagatgagggtgacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagcatggaataacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30022" stop="32158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30333" g_stop="30459" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="140" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="296" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="407" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31807" g_stop="31858" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="459" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E363993" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30333" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATG</genome_strand>
        <mrna_strand>GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTTTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGCATGGAATAACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413386" ref_strand="+" ref_description="SGN-E413386 [STM-17-F22]">
      <seq>caatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacaggtctttacttttactagttacatgtgattactatgtgggctcagaaataatgcagatataagccatttggagatagtaggattatcttgaaactcatatataatggaaaagcttacatgcttatagatggatgggactacgcaaactatgtcttcaatgtatcagtcaaacattttcgtaaaaatcatggttgaagcgagatttttattctgaaacttctactcttttagtcttccaaaaattcctattagaactactataccatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30048" stop="31748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30348" g_stop="30459" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="268" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31448" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="648" r_length="380" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E413386" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30348" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTA</genome_strand>
        <mrna_strand>CAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAGTAGGATTATCTTGAAACTCATATATAATGGAAAAGCTTACATGCTTATAGATGGATGGGACTACGCAAACTATGTCTTCAATGTATCAGTCAAACATTTT-CGTAAAAATCATGGTTGAAGCGAGATTTTTATTCTGAAACTTCTACTCTTTTAGTCTTCCAAAAATTCCTATTAGAACTACTATACCATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472128" ref_strand="+" ref_description="SGN-E472128 [cSTB-27-J13]">
      <seq>caatcagctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacaggtctttacttttactagttacatgtgattactatgtgggctcagaaataatgcagatataagccatttggagatagtaggattatcttgaaactcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30048" stop="31576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30348" g_stop="30459" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="268" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31276" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="477" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E472128" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30348" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATA</genome_strand>
        <mrna_strand>CAATCAGCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAGTAGGATTATCTTGAAACTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472201" ref_strand="+" ref_description="SGN-E472201 [cSTB-27-L18]">
      <seq>catttttctcataacactgtcaaaggacacgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgtggaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatcggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacaggtctttacttttactagttacatgtgattactatgtgggctcacaaataatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30055" stop="31531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30348" g_stop="30459" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="268" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31231" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="432" r_length="164" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E472201" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30348" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGC</genome_strand>
        <mrna_strand>CATTTTTCTCATAACACTGTCAAAGGACACGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTGGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATCGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCACAAATAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273785" ref_strand="+" ref_description="SGN-E273785 [cLEN-7-L17]">
      <seq>atcagctcataacactgtcaaaggacgcgagggctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaaccttattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccacaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30050" stop="32207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30350" g_stop="30459" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="266" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="377" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31807" g_stop="31907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="478" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E273785" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30350" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCT</genome_strand>
        <mrna_strand>ATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTTATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCACAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259997" ref_strand="+" ref_description="SGN-E259997 [cLEG-51-H16]">
      <seq>gctggtggttctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaaaggggcaattgctgtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30082" stop="32464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30382" g_stop="30459" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="234" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="345" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="456" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32146" g_stop="32164" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="475" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E259997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30382" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGA</genome_strand>
        <mrna_strand>GCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAA....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698537" ref_strand="+" ref_description="SGN-E698537 [FA06CG11]">
      <seq>ctgctgaaggagctcatctccatattgttcatctatctgatgctagaacttcactaaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30092" stop="33149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30392" g_stop="30459" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="224" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="335" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="446" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="545" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="694" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32766" g_stop="32849" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="778" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E698537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30392" e_stop="30459"/>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="32849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAGGTAACAAAACATTTCTCTCAAACTTCTGTGTTCTTTTATTTGTTTTGTATTCTATCCCATTTGTTGCCTTTGTACCCCTTGTACCCTTTGTGGTGGGCTATTTTTGTTAAGAGCAGGGAAGTCATCATTGTCAAGAAATTCTGTTACTCTTTGTCACTTTAGTAAATGATGTAAGGACTGACCATCACATGTTTATATCACAATATGGTCACTTTCATGAATCCTGAGTAAACAGTAATATTGATTCAGCTGAGAGTGGCCTAGATATTAAAATAATTGTTTCTAATTTTACACCTAAAATTGCTGTGGAATACCTTACATTATCATTCTGAAAATATCTTATTCCTTTTTAATCATAGGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTA</genome_strand>
        <mrna_strand>CTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360826" ref_strand="+" ref_description="SGN-E360826 [cLPP-7-P15]">
      <seq>ggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccattatctcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccattcgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaacttttagatgagggtgacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagcatggaataacatttgagcaattggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30518" stop="32506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30818" g_stop="30974" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="268" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="379" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32146" g_stop="32206" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="440" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E360826" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30818" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCG</genome_strand>
        <mrna_strand>GGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTTTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGCATGGAATAACATTTGAGCAATTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413428" ref_strand="+" ref_description="SGN-E413428 [STM-17-J24]">
      <seq>taaacctcattaaggaagccaaacaaaggggtgatagcatcaccgttgaaacttgcccccaggggggcgcttttgcagctgaagatattcctgatggagatactcggtttaagtgtgctccacccatccgtgatgcagccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacaggtctttacttttactagttacatgtgattactatgtgggctcagaaataatgcagatataagccatttggagatagtaggattatcttgaaactcatatataatggaaaagcttacatgcttatagatggatgggactacgcaaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30513" stop="31627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30819" g_stop="30974" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="170" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31068" g_stop="31327" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="430" r_length="260" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E413428" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30819" e_stop="30974"/>
          <exon e_start="31068" e_stop="31327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTAT</genome_strand>
        <mrna_strand>GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCAGGGGGGCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATCCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAGTAGGATTATCTTGAAACTCATATATAATGGAAAAGCTTACATGCTTATAGATGGATGGGACTACGCAAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420509" ref_strand="+" ref_description="SGN-E420509 [STM-31-G20]">
      <seq>agccaataaagaaaaactatgggatgcgttactggatggagatattgacatgttaagttctgaccactcaccttctgtgccagaaatgaaactcttagatgagggtgacttcttgaaagcatggggtggcatatcttctttacagtttgttctacccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacaagcctattggttgtccctttgacattcttggagacgaccacatggcatgacacatgtagatggaattgataacttcatcattcagatcaaagccaaactttgcatggatctaagttgttcatcgtcttcactcttcttttaggtgtgcaacangggctggagtgtatataatctgttgcaggcccttagttgatagtcattggatatttaactctgtagaaaataaatatttcatttgaagctgaaagctcttgtttgtgatgaaagtcacattangaattaaattcatcttcataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30641" stop="33332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30941" g_stop="30974" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93">
            <donor d_prob="0.818" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31068" g_stop="31178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="145" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="355" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="504" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32741" g_stop="33039" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="798" r_length="294" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E420509" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30941" e_stop="30974"/>
          <exon e_start="31068" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32741" e_stop="33039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAATAAAGAAAAACTATGGGATGCGTTACTGGTATAGGCAACTTCCAAACTCCGTTACTGCTATAATCACATCCCATATTTCTTCTTTCAAAGAATTTACTTCATTTATTTGTATGCTTTTCAGGATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACA-GGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAA</genome_strand>
        <mrna_strand>AGCCAATAAAGAAAAACTATGGGATGCGTTACTG.............................................................................................GATGGAGATATTGACATGTTAAGTTCTGACCACTCACCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGTGACTTCTTGAAAGCATGGGGTGGCATATCTTCTTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACAAGCCTATTG........................................................................--GT--TG-TCC--CTTTGACAT-TCTTGGAGACGACCACATGGCATGACACATGTAGATGGAATTGATAACTTCATCATTCAGATCAAAGCCAAACTTTGCATGGATCTAAGTTGTTCATCGTCTTCACTCTTCTTTTAGGTGTGCAACANGGGCTGGAGTGTATATAATCTGTTGCAGGCCCTTAGTTGATAGTCATTGGATATTTAACTCTGTAGAAAATAAATATTTCATTTGAAGCTGAAAGCTCTTGTTTGTGATGAAAGTCACATTANGAATTAAATTCATCTTCATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706511" ref_strand="+" ref_description="SGN-E706511 [FA30AF11]">
      <seq>ggagatattgacatgttaagttctgaccactcgccttctgtgccagaaatgaaactcttagatgagggagacttcttgaaagcatggggtggcatatcttccttacagtttgttctacccgtgacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="30771" stop="33320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31071" g_stop="31178" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31807" g_stop="31917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="219" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="318" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="467" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32766" g_stop="33020" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="722" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E706511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31071" e_stop="31178"/>
          <exon e_start="31807" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="33020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTAGTTGCACTTTGTTTCTGAAGATTAGAGAAGTCATATAGGCTCTTTTTGTGTATCTAGAGTATAAAGATAACCTTTTAGCCACTGAATATGAGAATACATATTTATCAACATAAACTTTCTTAGCCCTATCAGCGACTTTCCTGTTATACTTGCAAATTGACCTACAGTAGATAGTTGAAAGTGTGTCATGCACCACAGTTGTAGCTCTGCTACTATTCCCAGGCATGTCAATATTGGTGTGGTTTCTCAGACAGACTTAAAGAATGAATTACAATTAACACAATGCTTGGTATAAGTATCAAAACATAATCATCATAATCTGTTTGATATACTATAAGGTGTTGTTACTTTTATGCAGTTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAA</genome_strand>
        <mrna_strand>GGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279572" ref_strand="+" ref_description="SGN-E279572 [cLER-5-D24]">
      <seq>ttgctctacccgggacatggacacatgggcgtaagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccagacttgcaggtctaacgactaaggcatcatgttgaagtattttaatattacatggactgttagtaattaaacaagttcaaatgtcattctgctttaaattttgaaaaaattgatgtcagataagtctactataatatggtctggtttatgatccatacatagttttgttactgctgcaattataggcgctgtaaatttttatgatacttccatatcttggtgcgctggtatatgattatagttcttttgcagggggcaattgctgtggggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31508" stop="32466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31808" g_stop="32166" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E279572" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31808" e_stop="32166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGT-AGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAAC</genome_strand>
        <mrna_strand>TTGCTCTACCCGGGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAGACTTGCAGGTCTAACGACTAAGGCATCATGTTGAAGTATTTTAATATTACATGGACTGTTAGTAATTAAACAAGTTCAAATGTCATTCTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATATGGTCTGGTTTATGATCCATACATAGTTTTGTTACTGCTGCAATTATAGGCGCTGTAAATTTTTATGATACTTCCATATCTTGGTGCGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420510" ref_strand="-" ref_description="SGN-E420510 [STM-31-G20]">
      <seq>ccgcgacatggacacatgggcgcaagtatggaataacatttgagcagttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacaagcctattggttgtccctttgacattcttggagacgaccacatggcatgacacatgtagatggaattgataacttcatcattcagatcaaagccaaactttgcatggatctaagttgttcatcgtcttcactcttcttttaggtgtgcaacagggctggagtgtatataatctgttgcaggcccttagttgatagtcattggatatttaactctgtagaaaataaatatttcaattgaagctgaaagctcttgttgttgatgaagtacacataaagaattaaattcatcttcatcaaaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31517" stop="33331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31817" g_stop="31917" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="200" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="349" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32741" g_stop="33041" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="644" r_length="295" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E420510" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31817" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32741" e_stop="33041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAAT</genome_strand>
        <mrna_strand>CCGCGACATGGACACATGGGCGCAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACAAGCCTATTG........................................................................--GT--TG-TCC--CTTTGACAT-TCTTGGAGACGACCACATGGCATGACACATGTAGATGGAATTGATAACTTCATCATTCAGATCAAAGCCAAACTTTGCATGGATCTAAGTTGTTCATCGTCTTCACTCTTCTTTTAGGTGTGCAACAGGGCTGGAGTGTATATAATCTGTTGCAGGCCCTTAGTTGATAGTCATTGGATATTTAACTCTGTAGAAAATAAATATTTCAATTGAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATAAAGAATTAAATTCATCTTCATCAAAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623381" ref_strand="+" ref_description="SGN-E623381 [88472]">
      <seq>gcgacatggacacatgggcgtaagtatggaataacatttgagcagttggcttcttggtggagtgagaagcctgccaaacttgctggtctaacgactaaggggggaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgcgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacgagcctattggttgtccctttgacgttcttggagacgaccacatggcatgacacatgtagatggaattgataacttcatcattcagatcaaagccaaactttgcatggatctaagttgttcattgtcttcactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgcaggcccttagttgatagtcattggatatttaactatgtagaaaataaatatttcaattgaagctgaaagctcttgttggttgatgaagtacacattaagaattaaattcatcttcataatctagaaacaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31519" stop="33340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31819" g_stop="31917" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="198" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="347" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32741" g_stop="33032" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="634" r_length="287" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E623381" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31819" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32741" e_stop="33032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTT-GTTGATGAAGTACACATTAAGACTTGAATACATCTTCATA</genome_strand>
        <mrna_strand>GCGACATGGACACATGGGCGTAAGTATGGAATAACATTTGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGGAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGCGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACGAGCCTATTG........................................................................--GT--TG-TCC--CTTTGACGT-TCTTGGAGACGACCACATGGCATGACACATGTAGATGGAATTGATAACTTCATCATTCAGATCAAAGCCAAACTTTGCATGGATCTAAGTTGTTCATTGTCTTCACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGCAGGCCCTTAGTTGATAGTCATTGGATATTTAACTATGTAGAAAATAAATATTTCAATTGAAGCTGAAAGCTCTTGTTGGTTGATGAAGTACACATTAAGAATTAAATTCATCTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395842" ref_strand="+" ref_description="SGN-E395842 [TUS-17-P8](-)">
      <seq>taagtatggaataacatatgagcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatttggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatttaagttgttcatcgttttaacttttcttttaggcgtgcaacagggctggagtgtatataatttgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaatacattttcatagttacaaattccatgagaaactaatatcaacttaattttgtctttctagccaaatttgatttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31539" stop="33399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31839" g_stop="31917" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="178" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="327" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32766" g_stop="33097" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="659" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="673"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E395842" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31839" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="33097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAAATCTGATCTGAA</genome_strand>
        <mrna_strand>TAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATTTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATTTAAGTTGTTCATCGTTTTAACTTTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATTTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATTTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAAATTTGATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711271" ref_strand="+" ref_description="SGN-E711271 [FB01CA05]">
      <seq>gatcagttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31558" stop="33324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31858" g_stop="31917" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="159" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="306" r_length="147" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32766" g_stop="33019" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="560" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="575"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E711271" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31858" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="33019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGA</genome_strand>
        <mrna_strand>GATCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AG--TATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401261" ref_strand="+" ref_description="SGN-E401261 [PPC-3-H19]">
      <seq>tttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacaagcctattggttgtccctttgacattcttggagacgaccacatggcatgacacatgtagatggaattgataacttcatcattcagatcaaagccaaactttgcatggatctaagttgttcatcgtcttcactcttcttttaggtgtgcaacagggctggagtgtatataatctgttgcaggcccttagttgatagtcattggatatttaactctgcagaaaataaatatttcaattgaagctgaaagctcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31564" stop="33291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31863" g_stop="31917" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="154" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="303" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32740" i_length="72">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32741" g_stop="32991" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="548" r_length="245" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E401261" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31863" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32741" e_stop="32991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGT</genome_strand>
        <mrna_strand>TTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACAAGCCTATTG........................................................................--GT--TG-TCC--CTTTGACAT-TCTTGGAGACGACCACATGGCATGACACATGTAGATGGAATTGATAACTTCATCATTCAGATCAAAGCCAAACTTTGCATGGATCTAAGTTGTTCATCGTCTTCACTCTTCTTTTAGGTGTGCAACAGGGCTGGAGTGTATATAATCTGTTGCAGGCCCTTAGTTGATAGTCATTGGATATTTAACTCTGCAGAAAATAAATATTTCAATTGAAGCTGAAAGCTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296199" ref_strand="+" ref_description="SGN-E296199 [cLET-24-K21]">
      <seq>gttggcttcttggtggagtgagaagcctgccaaacttgcaggtctaacgactaagggggcaattgctgtggggaaccaagcagatatagttgtttgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaagcgtgcaacaaggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31563" stop="33245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31863" g_stop="31917" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="154" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="303" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32766" g_stop="32945" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="483" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E296199" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31863" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="32945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTT</genome_strand>
        <mrna_strand>GTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAAGCGTGCAACAAGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401084" ref_strand="+" ref_description="SGN-E401084 [PPC-3-E1]">
      <seq>gttggcttcttggtggagtgagaatcctgccaaacttgctggtctaacgactaagggggcaattgctgtaggtaaccaagcagatatagttgtctgggagccagacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatttctgcatacatgggatcaagactctctgggaaagttttggcaacctttgtacgcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgtgctctcccaattcttcatagatagttagtgctacaagcctattggttgtccctttgacattcttggagacgaccacatggcatgacacatgtagatggaattgataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31563" stop="33106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31863" g_stop="31917" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32146" g_stop="32244" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="154" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="303" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32669" i_stop="32747" i_length="79">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32748" g_stop="32811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="368" r_length="65" r_score="0.766"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E401084" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31863" e_stop="31917"/>
          <exon e_start="32146" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32748" e_stop="32811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATG--ACATGTAGATGGAATTGATAACA</genome_strand>
        <mrna_strand>GTTGGCTTCTTGGTGGAGTGAGAATCCTGCCAAACTTGCTGGTCTAACGACTAAG....................................................................................................................................................................................................................................GGGGCAATTGCTGTAGGTAACCAAGCAGATATAGTTGTCTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATTTCTGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTACGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGTGCTCTCCCAATTCTTCATAGATAGTTAGTGCTACAAGCCTATTG...............................................................................GTTGTCCCTTTGACAT-TCTTGGAGACGACCACATGGCATGACACATGTAGATGGAATTGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711407" ref_strand="+" ref_description="SGN-E711407 [FB01DG01]">
      <seq>ccatacatggagttcgacctggataatgactaccctgtacatattaagcaccctagtatatccgcatacatgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaatacatcttcatagttacaaattccatgagaaactaatatcaacttaattttgtctttctagccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="31891" stop="33386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32191" g_stop="32244" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32520" g_stop="32668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="203" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32766" g_stop="33085" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="523" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="535"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E711407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32191" e_stop="32244"/>
          <exon e_start="32520" e_stop="32668"/>
          <exon e_start="32766" e_stop="33085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCTGTAAGTAAATTTACCTGTTAACTAGTAATTGTTATAGTAGTTTCTTATACCTGATTTGCGTGTGCAGAGATTTTGATTTTTTTCTTAGAAGGAATAACTACTAGGAAACATGTTTAAGGGTTCTATTCAAATAGATGAAGTTGTAATTTAGACAGAAGTATATCACCTACAACTTGAAATTCAGCTGTCAGATTATTTGCATGCTGCAGTTGTTACATTCCTTGCTTCTGGTTTTTGAAATTCAAATGTTGTTTATTGTTGTTCTTATTTGGCAGAGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAA</genome_strand>
        <mrna_strand>CCATACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT...................................................................................................................................................................................................................................................................................AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225439" ref_strand="+" ref_description="SGN-E225439 [cLEL-17-K1](-)">
      <seq>catgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaatacatcttcatagttacaaattccatgagaaactaatatcnacttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="32234" stop="33367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32534" g_stop="32668" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32766" g_stop="33066" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="436" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="455"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E225439" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32534" e_stop="32668"/>
          <exon e_start="32766" e_stop="33066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTA</genome_strand>
        <mrna_strand>CATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCNACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217750" ref_strand="+" ref_description="SGN-E217750 [cLEL-25-O5](-)">
      <seq>catgggatcaagactctctgggaaagttttggcaacctttgtgggcggaaatctggtatacaaggagggaaatcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgaccacatggcatnacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaatacatcttcatagttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="32234" stop="33340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32534" g_stop="32668" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32766" g_stop="33039" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="409" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="424"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E217750" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32534" e_stop="32668"/>
          <exon e_start="32766" e_stop="33039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAA</genome_strand>
        <mrna_strand>CATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATNACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217614" ref_strand="+" ref_description="SGN-E217614 [cLEL-25-O5](-)">
      <seq>tcatgcttctcaagcatgcgctctcccaattcttcataaatagttagtgctacgagcctattggttggagacgcccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaacacttgaatacatcttcatagttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="32306" stop="33340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32606" g_stop="32668" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32766" g_stop="33039" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="337" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="352"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E217614" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32606" e_stop="32668"/>
          <exon e_start="32766" e_stop="33039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAA</genome_strand>
        <mrna_strand>TCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG.................................................................................................GTTGGAGACGCCCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAACACTTGAATACATCTTCATAGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225859" ref_strand="+" ref_description="SGN-E225859 [cLEL-17-K1](-)">
      <seq>gcatgcgctctcccaattcttcataaatagttagtgctcgaagcctattggttggagacgaccacatggcatgacatgtagatggaattgataacactgtcattcagatcaaaacaaatctttgcatggatctaagttgttcatcgtcttaactcttcttttaggcgtgcaacagggctggagtgtatataatctgttgtacgcccttagttgatagtcattcgatatttaactctgtagaaaataaatatgtcactttaagctgaaagctcttgttgttgatgaagtacacattaagacttgaatacatcttcatagttacaaattccatgagaaactaatatcaacttacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="32319" stop="33366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32619" g_stop="32668" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32766" g_stop="33066" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="351" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="370"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E225859" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32619" e_stop="32668"/>
          <exon e_start="32766" e_stop="33066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTGGTAAATCTACCGCTCACCATATCATCCATATTCATTCCCTTATGCAATGTTGATGTCCATTTCAAACTGCAGTCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTA</genome_strand>
        <mrna_strand>GCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTCGAAGCCTATTG.................................................................................................GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736601" ref_strand="+" ref_description="SGN-E736601 [LC06BF10]">
      <seq>cttcaatgaatcttttcaacttcaactgcaaatgcaaatccaacaatttcttcagcattcatcttcctccgcctcacagctcgctctgtaaccgtcgtacaactaggttctccgtccgtttctcatccgagtcaactcacagagtcaaactcgccgagtcactgcaatccgaaaccttgaagcttctagaatggcccgccgtgtgtcaacagctctccgctttcacgtccacatccatgggatacgccgcagcacaatctgctcggattccggtgggtaaaactcgtgaagagagcagtagacttctctctcagacctcggccgcggtggctgtacctcggccgttggattttaccggaattgaagatatttccccaattgttgatgcttccgttgcaggcggtgtactctcgattcgtgaactttgctctgtgaaacgaaccttggcagcggcgagatttttgctccaacagttggaggagattgatttttctgaaagttaactcaaaatggcgaagcatgtctcatgtggtagtgatggattctcatgaagttccatttaaatagtattgagcagtttcattagaatgtctaattatcttcaaacaggtactcttctctgaaggaaattcttcacagttgtgattttcttgtggaattggagcaaaaaatagaattctgtattgattgcagcttttcagtaatccttgatagagctagtgaagatttggaaattataagatccgagagaaagaggaacatggataatctagaattattgttgaagcaattatcaactcaagtttttcaaggtggaggatttgacaggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="33046" stop="35143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33346" g_stop="33844" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33845" i_stop="34509" i_length="665">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34510" g_stop="34843" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="833" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E736601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33346" e_stop="33844"/>
          <exon e_start="34510" e_stop="34843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATGAATCTTTTCAACTTCAACTGCAAATGCAAATCCAACAATTTCTTCAGCATTCATCTTCCTCCGCCTCACAGCTCGCTCTGTAACCGTCGTACAACTAGGTTCTCCGTCCGTTTCTCATCCGAGTCAACTCACAGAGTCAAACTCGCCGAGTCACTGCAATCCGAAACCTTGAAGCTTCTAGAATGGCCCGCCGTGTGTCAACAGCTCTCCGCTTTCACGTCCACATCCATGGGATACGCCGCAGCACAATCTGCTCGGATTCCGGTGGGTAAAACTCGTGAAGAGAGCAGTAGACTTCTCTCTCAGACCTCGGCCGCGGTGGCTGTACCTCGGCCGTTGGATTTTACCGGAATTGAAGATATTTCCCCAATTGTTGATGCTTCCGTTGCAGGCGGTGTACTCTCGATTCGTGAACTTTGCTCTGTGAAACGAACCTTGGCAGCGGCGAGATTTTTGCTCCAACAGTTGGAGGAGATTGATTTTTCTGAAAGGTATATTGTTGTATTTAGTACTCTACTTAAAGCATTGCATTATTTTGTTTGTTGTTCTACGTTGTAGTTGCTTGGTGTTGGATTCTTATGGTATAAAGAACCTCTGATTGTAGATGATAGGGTGATCCGTGAGATTCAAGCAACTTGCAATTTAAAATCTGGGATCAGCTAGTCCATAGGATGATGATTCGAAAGCAAAATTTGTCTCTACAGCCATGCCTTAAGCTTGCTAATTTATCTTTAAGAACGTTTTTTGCTTAGCTCAAAAGTCTTAAGATAACAGTTAGTAAATTTTGTTTTTTACTGATTGCAAAATCATGGTAGAATTGACAATAGTTCTAGATTTTTGGTCAAAAGAACTGCCGCATAGCTGAAGTTTCTATCCAAAAATGTATCAAAGAGGTTGGTGGCTGTCCATCTGGGAATTAACTTGATGAAAAAGTAAGAGGTGAAATATAGTTCATCTGATGAATATCGGAGTGAGCACTCTTCCAAGATATTTGTAGGAAGTGGTAAATATGGTCTCATTCCTTTCTCGAATTTACACAATGCTGTGGTGCTTTTTGAAAGATTAAGAATGCAGGCTTTAAAGATGAATTCACCTTGAGTGTGTTTTCCCTTTATTTGCTGTTCCTCTGAGAATGCCTTCCTACTCCCAATTGCAGTTAACTCAAAATGGCGAAGCATGTCTCATGTGGTAGTGATGGATTCTCATGAAGTTCCATTTAAATAGTATTGAGCAGTTTCATTAGAATGTCTAATTATCTTCAAACAGGTACTCTTCTCTGAAGGAAATTCTTCACAGTTGTGATTTTCTTGTGGAATTGGAGCAAAAAATAGAATTCTGTATTGATTGCAGCTTTTCAGTAATCCTTGATAGAGCTAGTGAAGATTTGGAAATTATAAGATCCGAGAGAAAGAGGAACATGGATAATCTAGAATTATTGTTGAAGCAATTATCAACTCAAGTTTTTCAAGGTGGAGGATTTGACAGGCCTT</genome_strand>
        <mrna_strand>CTTCAATGAATCTTTTCAACTTCAACTGCAAATGCAAATCCAACAATTTCTTCAGCATTCATCTTCCTCCGCCTCACAGCTCGCTCTGTAACCGTCGTACAACTAGGTTCTCCGTCCGTTTCTCATCCGAGTCAACTCACAGAGTCAAACTCGCCGAGTCACTGCAATCCGAAACCTTGAAGCTTCTAGAATGGCCCGCCGTGTGTCAACAGCTCTCCGCTTTCACGTCCACATCCATGGGATACGCCGCAGCACAATCTGCTCGGATTCCGGTGGGTAAAACTCGTGAAGAGAGCAGTAGACTTCTCTCTCAGACCTCGGCCGCGGTGGCTGTACCTCGGCCGTTGGATTTTACCGGAATTGAAGATATTTCCCCAATTGTTGATGCTTCCGTTGCAGGCGGTGTACTCTCGATTCGTGAACTTTGCTCTGTGAAACGAACCTTGGCAGCGGCGAGATTTTTGCTCCAACAGTTGGAGGAGATTGATTTTTCTGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTCAAAATGGCGAAGCATGTCTCATGTGGTAGTGATGGATTCTCATGAAGTTCCATTTAAATAGTATTGAGCAGTTTCATTAGAATGTCTAATTATCTTCAAACAGGTACTCTTCTCTGAAGGAAATTCTTCACAGTTGTGATTTTCTTGTGGAATTGGAGCAAAAAATAGAATTCTGTATTGATTGCAGCTTTTCAGTAATCCTTGATAGAGCTAGTGAAGATTTGGAAATTATAAGATCCGAGAGAAAGAGGAACATGGATAATCTAGAATTATTGTTGAAGCAATTATCAACTCAAGTTTTTCAAGGTGGAGGATTTGACAGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701797" ref_strand="+" ref_description="SGN-E701797 [FA16DH07]">
      <seq>ccggtgggtaaaactcgtgaagagagcagtagacttctctctcagacctcggccgcggtggctgtacctcggccgttggattttaccggaattgaagatatttccccaattgttgatgcttccgttgcaggcggtgtactctcgattcgtgaactttgctctgtgaaacgaaccttggcagcggcgagatttttgctccaacagttggaggagattgatttttctgaaagttaactcaaaatggcgaagcatgtctcatgtggtagtgatggattctcatgaagttccatttaaatagtattgagcagtttcattagaatgtctaattatcttcaaacaggtactcttctctgaaggaaattcttcacagttgtgattttcttgtggaattggagcaaaaaatagaattctgtattgattgcagcttttcagtaatccttgatagagctagtgaagatttggaaattataagatccgagagaaagaggaacatggataatctagaattattgtttaagcaattatcaactcaagtttttcaaggtggaggatttgacaggcctttagtgaccaagcgccgttcaagattgtgtgttgctgtgagagcttcacatagatctttgcttcctaattccgtaatcctagatacaagcagtagtggatctacatacttcatggaacctaaagaggcagttgagctaaacaacatggaagttaaactttctagttctgagaaggttgaggagcaaacaattttgagtttgcttacatctgaaatagcagaatctaatatgaaaataaagcactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="33315" stop="35388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33615" g_stop="33844" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33845" i_stop="34509" i_length="665">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34510" g_stop="35088" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="809" r_length="579" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E701797" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33615" e_stop="33844"/>
          <exon e_start="34510" e_stop="35088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTGGGTAAAACTCGTGAAGAGAGCAGTAGACTTCTCTCTCAGACCTCGGCCGCGGTGGCTGTACCTCGGCCGTTGGATTTTACCGGAATTGAAGATATTTCCCCAATTGTTGATGCTTCCGTTGCAGGCGGTGTACTCTCGATTCGTGAACTTTGCTCTGTGAAACGAACCTTGGCAGCGGCGAGATTTTTGCTCCAACAGTTGGAGGAGATTGATTTTTCTGAAAGGTATATTGTTGTATTTAGTACTCTACTTAAAGCATTGCATTATTTTGTTTGTTGTTCTACGTTGTAGTTGCTTGGTGTTGGATTCTTATGGTATAAAGAACCTCTGATTGTAGATGATAGGGTGATCCGTGAGATTCAAGCAACTTGCAATTTAAAATCTGGGATCAGCTAGTCCATAGGATGATGATTCGAAAGCAAAATTTGTCTCTACAGCCATGCCTTAAGCTTGCTAATTTATCTTTAAGAACGTTTTTTGCTTAGCTCAAAAGTCTTAAGATAACAGTTAGTAAATTTTGTTTTTTACTGATTGCAAAATCATGGTAGAATTGACAATAGTTCTAGATTTTTGGTCAAAAGAACTGCCGCATAGCTGAAGTTTCTATCCAAAAATGTATCAAAGAGGTTGGTGGCTGTCCATCTGGGAATTAACTTGATGAAAAAGTAAGAGGTGAAATATAGTTCATCTGATGAATATCGGAGTGAGCACTCTTCCAAGATATTTGTAGGAAGTGGTAAATATGGTCTCATTCCTTTCTCGAATTTACACAATGCTGTGGTGCTTTTTGAAAGATTAAGAATGCAGGCTTTAAAGATGAATTCACCTTGAGTGTGTTTTCCCTTTATTTGCTGTTCCTCTGAGAATGCCTTCCTACTCCCAATTGCAGTTAACTCAAAATGGCGAAGCATGTCTCATGTGGTAGTGATGGATTCTCATGAAGTTCCATTTAAATAGTATTGAGCAGTTTCATTAGAATGTCTAATTATCTTCAAACAGGTACTCTTCTCTGAAGGAAATTCTTCACAGTTGTGATTTTCTTGTGGAATTGGAGCAAAAAATAGAATTCTGTATTGATTGCAGCTTTTCAGTAATCCTTGATAGAGCTAGTGAAGATTTGGAAATTATAAGATCCGAGAGAAAGAGGAACATGGATAATCTAGAATTATTGTTGAAGCAATTATCAACTCAAGTTTTTCAAGGTGGAGGATTTGACAGGCCTTTAGTGACCAAGCGCCGTTCAAGATTGTGTGTTGCTGTGAGAGCTTCACATAGATCTTTGCTTCCTAATTCCGTAATCCTAGATACAAGCAGTAGTGGATCTACATACTTCATGGAACCTAAAGAGGCAGTTGAGCTAAACAACATGGAAGTTAAACTTTCTAGTTCTGAGAAGGTTGAGGAGCAAACAATTTTGAGTTTGCTTACATCTGAAATAGCAGAATCTAATATGAAAATAAAGCACTTA</genome_strand>
        <mrna_strand>CCGGTGGGTAAAACTCGTGAAGAGAGCAGTAGACTTCTCTCTCAGACCTCGGCCGCGGTGGCTGTACCTCGGCCGTTGGATTTTACCGGAATTGAAGATATTTCCCCAATTGTTGATGCTTCCGTTGCAGGCGGTGTACTCTCGATTCGTGAACTTTGCTCTGTGAAACGAACCTTGGCAGCGGCGAGATTTTTGCTCCAACAGTTGGAGGAGATTGATTTTTCTGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTCAAAATGGCGAAGCATGTCTCATGTGGTAGTGATGGATTCTCATGAAGTTCCATTTAAATAGTATTGAGCAGTTTCATTAGAATGTCTAATTATCTTCAAACAGGTACTCTTCTCTGAAGGAAATTCTTCACAGTTGTGATTTTCTTGTGGAATTGGAGCAAAAAATAGAATTCTGTATTGATTGCAGCTTTTCAGTAATCCTTGATAGAGCTAGTGAAGATTTGGAAATTATAAGATCCGAGAGAAAGAGGAACATGGATAATCTAGAATTATTGTTTAAGCAATTATCAACTCAAGTTTTTCAAGGTGGAGGATTTGACAGGCCTTTAGTGACCAAGCGCCGTTCAAGATTGTGTGTTGCTGTGAGAGCTTCACATAGATCTTTGCTTCCTAATTCCGTAATCCTAGATACAAGCAGTAGTGGATCTACATACTTCATGGAACCTAAAGAGGCAGTTGAGCTAAACAACATGGAAGTTAAACTTTCTAGTTCTGAGAAGGTTGAGGAGCAAACAATTTTGAGTTTGCTTACATCTGAAATAGCAGAATCTAATATGAAAATAAAGCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460141" ref_strand="+" ref_description="SGN-E460141 [cPRO-30-E23]">
      <seq>gtggatgggtgctgcctgtccagctttaagtccaagaaattgtaacatatcccaatctgaacatttatctataaatgtagaagggatacaacatcctttgcttcttgaatcctccttgagaaacttgtcgactgatgtgtccccaagatcacctgatttggatcaaggaaatggtatcatgaattttgaaacaaaatctcatgcacatttccctgtgcccattgatattaaaattggtcatggaacaaaggtggttgtcatctcgggccctaatactggaggcaaaacggcttcaatgaagactctaggactggcttctatgatgttgaaggctggcatgtatttgcctgcccaaaataaaccacggcttccatggtttgatcttattctggcagacattggagaccaacagtctctggagcaaagtctatcaacctttagtgggcacatttcacggcttcgtgagattctggaagttgcttctagagaatctctagttcttattgatgaaattggaagtgggaccgatccttcagaaggtgtagcactttcagaaagcgtactgcaatatctcaaggacagggttaatttagctgttgtaactacccactatgcagatttaactcgattaaaagaaaaggacaatcggtttgaaacagcagcaacagagttttccttggagactctacagcctacatatcggattctctgggggagcatgggtgaatcaaatgcctttgatattgcaaaaatcatgggctttgatgaaagaatattgagcgagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="34842" stop="36394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35142" g_stop="35553" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35554" i_stop="35718" i_length="165">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.484" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35719" g_stop="36094" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="787" r_length="375" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E460141" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35142" e_stop="35553"/>
          <exon e_start="35719" e_stop="36094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATGGGTGCTGCCTGTCCAGCTTTAAGTCCAAGAAATTGCAACATATCCCAATCTGAACATTTATCTATAAATGTAGAAGGGATACAACATCCTTTGCTTCTTGAATCCTCCTTGGAAAACTTGTCGACTGATGTGTCCCCAAGATCACCTGATTTGGATCAAGGAAATGGTGTCGTGAATTTCGAGACAAAATCTCATGCACATTTCCCTGTGCCCATTGATATTAAAATTGGTCATGGAACAAAGGTTGTTGTCATCTCGGGCCCAAATACCGGAGGCAAAACGGCTTCAATGAAGACTCTAGGACTGGCTTCTATGATGTTGAAGGCTGGCATGTATTTGCCTGCCCAAAATAAACCACAGCTTCCATGGTTTGACCTTATTCTGGCAGACATTGGGGACCAACAGGTACTTGGTTTTGTTATACTCCCTTCTTTCCCCATCATCCGTCTCAGATGTATGTCTTTTTTCAATCTAACCCAGTTGAAGTTTCATGTGCTTCTTCATTGTCTTGTTTCTTTTATTAGCACCATCTATCTTATCAATTGAAATTTTATATTTTGCCTGCTGAAGTCTCTGGAGCAAAGTCTATCAACCTTTAGTGGGCACATTTCACGGCTTCGTGAGATTCTAGAAGTTGCTTCTGGAGAATCTCTAGTTCTTATTGATGAAATTGGAAGTGGGACCGATCCTTCAGAAGGTGTAGCACTTTCAGAAAGCATACTGCAATATCTCAAGGACAGGGTTAATTTAGCTGTTGTAACTACCCACTATGCGGATTTAACTCGCTTAAAAGAAAAGGACAATCGGTTTGAAACAGCAGCAACAGAGTTTTCCTTGGAGACTCTACAGCCTACCTATCGGATTCTATGGGGAAGCATGGGTGAATCAAATGCCTTGAATATTGCAAAATCAATGGGCTTTGATGAAAGAATAATTGAGCGAGCAG</genome_strand>
        <mrna_strand>GTGGATGGGTGCTGCCTGTCCAGCTTTAAGTCCAAGAAATTGTAACATATCCCAATCTGAACATTTATCTATAAATGTAGAAGGGATACAACATCCTTTGCTTCTTGAATCCTCCTTGAGAAACTTGTCGACTGATGTGTCCCCAAGATCACCTGATTTGGATCAAGGAAATGGTATCATGAATTTTGAAACAAAATCTCATGCACATTTCCCTGTGCCCATTGATATTAAAATTGGTCATGGAACAAAGGTGGTTGTCATCTCGGGCCCTAATACTGGAGGCAAAACGGCTTCAATGAAGACTCTAGGACTGGCTTCTATGATGTTGAAGGCTGGCATGTATTTGCCTGCCCAAAATAAACCACGGCTTCCATGGTTTGATCTTATTCTGGCAGACATTGGAGACCAACAG.....................................................................................................................................................................TCTCTGGAGCAAAGTCTATCAACCTTTAGTGGGCACATTTCACGGCTTCGTGAGATTCTGGAAGTTGCTTCTAGAGAATCTCTAGTTCTTATTGATGAAATTGGAAGTGGGACCGATCCTTCAGAAGGTGTAGCACTTTCAGAAAGCGTACTGCAATATCTCAAGGACAGGGTTAATTTAGCTGTTGTAACTACCCACTATGCAGATTTAACTCGATTAAAAGAAAAGGACAATCGGTTTGAAACAGCAGCAACAGAGTTTTCCTTGGAGACTCTACAGCCTACATATCGGATTCTCTGGGGGAGCATGGGTGAATCAAATGCCTTTGATATTGCAAAAATCATGGGCTTTGATGAAAGAAT-ATTGAGCGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436127" ref_strand="+" ref_description="SGN-E436127 [STM-62-F15]">
      <seq>gtggatgggtgctgcctgtccagctttaagtccaagaaattgtaacatatcccaatctgaacatttatctataaatgtagaagggatacaacatcctttgcttcttgaatcctccttgagaaacttgtcgactgatgtgtccccaagatcacctgatttggatcaaggaaatggtatcatgaattttgaaacaaaatctcatgcacatttccctgtgcccattgatattaaaattggtcatggaacaaaggtggttgtcatctcgggccctaatactggaggcaaaacggcttcaatgaagactctaggactggcttctatgatgttgaaggctggcatgtatttgcctgcccaaaataaaccacggcttccatggtttgatcttattctggcagacattggagaccaacagtctctggagcaaagtctatcaacctttagtgggcacatttcacggcttcgtgagattctggaagttgcttctagagaatctctagttcttattgatgaaattggaagtgggaccgatccttcagaaggtgtagcactttcagaaagcgtactgcaatatctcaaggacagggttaatttagctgttgtaactacccactatgcagatttaactcgattaaaagaaaaggacaatcggtttgaaacagcagcaacagagttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="34842" stop="36282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35142" g_stop="35553" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35554" i_stop="35718" i_length="165">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.484" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35719" g_stop="35982" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="676" r_length="264" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E436127" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35142" e_stop="35553"/>
          <exon e_start="35719" e_stop="35982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATGGGTGCTGCCTGTCCAGCTTTAAGTCCAAGAAATTGCAACATATCCCAATCTGAACATTTATCTATAAATGTAGAAGGGATACAACATCCTTTGCTTCTTGAATCCTCCTTGGAAAACTTGTCGACTGATGTGTCCCCAAGATCACCTGATTTGGATCAAGGAAATGGTGTCGTGAATTTCGAGACAAAATCTCATGCACATTTCCCTGTGCCCATTGATATTAAAATTGGTCATGGAACAAAGGTTGTTGTCATCTCGGGCCCAAATACCGGAGGCAAAACGGCTTCAATGAAGACTCTAGGACTGGCTTCTATGATGTTGAAGGCTGGCATGTATTTGCCTGCCCAAAATAAACCACAGCTTCCATGGTTTGACCTTATTCTGGCAGACATTGGGGACCAACAGGTACTTGGTTTTGTTATACTCCCTTCTTTCCCCATCATCCGTCTCAGATGTATGTCTTTTTTCAATCTAACCCAGTTGAAGTTTCATGTGCTTCTTCATTGTCTTGTTTCTTTTATTAGCACCATCTATCTTATCAATTGAAATTTTATATTTTGCCTGCTGAAGTCTCTGGAGCAAAGTCTATCAACCTTTAGTGGGCACATTTCACGGCTTCGTGAGATTCTAGAAGTTGCTTCTGGAGAATCTCTAGTTCTTATTGATGAAATTGGAAGTGGGACCGATCCTTCAGAAGGTGTAGCACTTTCAGAAAGCATACTGCAATATCTCAAGGACAGGGTTAATTTAGCTGTTGTAACTACCCACTATGCGGATTTAACTCGCTTAAAAGAAAAGGACAATCGGTTTGAAACAGCAGCAACAGAGTTTTCC</genome_strand>
        <mrna_strand>GTGGATGGGTGCTGCCTGTCCAGCTTTAAGTCCAAGAAATTGTAACATATCCCAATCTGAACATTTATCTATAAATGTAGAAGGGATACAACATCCTTTGCTTCTTGAATCCTCCTTGAGAAACTTGTCGACTGATGTGTCCCCAAGATCACCTGATTTGGATCAAGGAAATGGTATCATGAATTTTGAAACAAAATCTCATGCACATTTCCCTGTGCCCATTGATATTAAAATTGGTCATGGAACAAAGGTGGTTGTCATCTCGGGCCCTAATACTGGAGGCAAAACGGCTTCAATGAAGACTCTAGGACTGGCTTCTATGATGTTGAAGGCTGGCATGTATTTGCCTGCCCAAAATAAACCACGGCTTCCATGGTTTGATCTTATTCTGGCAGACATTGGAGACCAACAG.....................................................................................................................................................................TCTCTGGAGCAAAGTCTATCAACCTTTAGTGGGCACATTTCACGGCTTCGTGAGATTCTGGAAGTTGCTTCTAGAGAATCTCTAGTTCTTATTGATGAAATTGGAAGTGGGACCGATCCTTCAGAAGGTGTAGCACTTTCAGAAAGCGTACTGCAATATCTCAAGGACAGGGTTAATTTAGCTGTTGTAACTACCCACTATGCAGATTTAACTCGATTAAAAGAAAAGGACAATCGGTTTGAAACAGCAGCAACAGAGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213142" ref_strand="+" ref_description="SGN-E213142 [cLEC-72-O5]">
      <seq>cagccttcagtatttagacaaaactttcttggcttctttcttctatacaataaaaaaaataatattcctaatttaaaacaagtatgtttgattttctggattttcaaaaccatgttccaagaaaaagataattttatttatacaaaattttcataacgtaaaatatttaactactaataagtgccatttgaacaatggatagatgtgacagatgtactgtcaacattattgatgccacgtcagtactttattttcggttacaacagtcatttggataagcatctcaagagtttgtacatttcgtagtttgacttgatacgaaattttatttattttttattttttttgaaatttgtaatttatataaatagtcataatattgttgttgctgctgggaattttatggttaatgaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccnaccctttcaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatctttttctggtggtttagacaacacttttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38504" stop="40025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38804" g_stop="39455" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="720" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E213142" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38804" e_stop="39455"/>
          <exon e_start="39660" e_stop="39725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTCAGTATTTAGACAAAACTTTCTTGGCTTCTTTCTTCTATACAATAAAAAAAATAATATTCCTAATTTAAAACAAGTATGTTTGATTTTCTGGATTTTCAAAACCATGTTCCAAGAAAAAGATAATTTTATTTATACAAAATTTTCATAACGTAAAATATTTAACTACTAATAAGTGCCATTTGAACAATGGATAGATGTGACAGATGTACTGTCAACATTATTGATGCCACGTCAGTACTTTATTTTCGGTTACAACAGTCATTTGGATAAGCATCTCAAGAGTTTGTACATTTCGTAGTTTGACTTGATACGAAATTTTATTTATTTTTTATTTTTTTTGAAATTTGTAATTTATATAAATAGTCATAATATTGTTGTTGCTGCTGGGAATTTTATGGTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACC-ACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATC-TTTTCTGGTGGTTTAGACAACACTTTTGATTT</genome_strand>
        <mrna_strand>CAGCCTTCAGTATTTAGACAAAACTTTCTTGGCTTCTTTCTTCTATACAATAAAAAAAATAATATTCCTAATTTAAAACAAGTATGTTTGATTTTCTGGATTTTCAAAACCATGTTCCAAGAAAAAGATAATTTTATTTATACAAAATTTTCATAACGTAAAATATTTAACTACTAATAAGTGCCATTTGAACAATGGATAGATGTGACAGATGTACTGTCAACATTATTGATGCCACGTCAGTACTTTATTTTCGGTTACAACAGTCATTTGGATAAGCATCTCAAGAGTTTGTACATTTCGTAGTTTGACTTGATACGAAATTTTATTTATTTTTTATTTTTTTTGAAATTTGTAATTTATATAAATAGTCATAATATTGTTGTTGCTGCTGGGAATTTTATGGTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCNACCCTTTCAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTTCTGGTGGTTTAGACAACACTTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721281" ref_strand="+" ref_description="SGN-E721281 [FC13BC12]">
      <seq>gcgattggcggccaatcggccgaattgatggttaatgaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtacaccaaactccacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactacggttgaatgaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38899" stop="40761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39206" g_stop="39455" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="277" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="518" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="639" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40461" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="837" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E721281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39206" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACG</genome_strand>
        <mrna_strand>ATGGTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453924" ref_strand="+" ref_description="SGN-E453924 [cSTS-21-H21]">
      <seq>gttcttgaaaaagtttctagcttttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttctaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatttcctccaaggtgtatcttcataagtgacacagggctaataagnctttgatcatccaatgcacaaagtaaaaggaattgcacgcgaagatgatgaaggaaatgtcaaatgctgtgattttccaggtggacttgtataccaaactccacagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38909" stop="40706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39209" g_stop="39455" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="469" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="590" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.061" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40406" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="735" r_length="145" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E453924" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39209" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAG-CTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTC-AATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATT</genome_strand>
        <mrna_strand>GTTCTTGAAAA-AGTTTCTAGCTTTTATTTGA--A-TAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCTAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTTCCTCCAA.....................................................................................GGTGTATCTTCATAAGTGACACAGGGCTAATAAGNCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGCGAAGATGATGAAGGAAATGTCAAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTCCACAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265237" ref_strand="+" ref_description="SGN-E265237 [cLEI-2-N18]">
      <seq>gttaatgaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38909" stop="40136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39209" g_stop="39455" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39836" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="424" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E265237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39209" e_stop="39455"/>
          <exon e_start="39660" e_stop="39836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGA</genome_strand>
        <mrna_strand>GTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211261" ref_strand="+" ref_description="SGN-E211261 [cLEC-70-A10]">
      <seq>ttaatgaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtggggaattgtataccccgtttcctccaggttgtatcttcataagtgacactgggctaataagctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38910" stop="40604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39210" g_stop="39455" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="487" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="608" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40304" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="649" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E211261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39210" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGAT</genome_strand>
        <mrna_strand>TTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGGAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248256" ref_strand="+" ref_description="SGN-E248256 [cLEF-55-O3]">
      <seq>taatgaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38911" stop="40172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39211" g_stop="39455" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39872" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="458" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E248256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39211" e_stop="39455"/>
          <exon e_start="39660" e_stop="39872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTA</genome_strand>
        <mrna_strand>TAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457197" ref_strand="+" ref_description="SGN-E457197 [cPRO-1-B12]">
      <seq>cttgaaaaaagtttctagcttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacagaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctanggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38914" stop="40470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39212" g_stop="39455" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="471" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40170" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="584" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E457197" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39212" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAAAAAGTTTCTAGCTTTTATTTGAGT-AGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTT</genome_strand>
        <mrna_strand>CTTGAAAAAAGTTTCTAGCTTTTATTTATTTGAATAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAGAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTANG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269574" ref_strand="+" ref_description="SGN-E269574 [cLEM-2-I20]">
      <seq>atgaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38913" stop="40426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39213" g_stop="39455" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="484" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40126" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="553" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E269574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39213" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGAT</genome_strand>
        <mrna_strand>ATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374105" ref_strand="+" ref_description="SGN-E374105 [TUS-33-F3]">
      <seq>gaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38915" stop="40671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39215" g_stop="39455" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="482" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="603" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40371" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="711" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E374105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39215" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTT</genome_strand>
        <mrna_strand>GAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300437" ref_strand="+" ref_description="SGN-E300437 [cLET-45-M12]">
      <seq>gaaaaaagtttctagcttttatttgagtagtaaacatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38915" stop="40425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39215" g_stop="39455" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="482" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40125" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="550" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E300437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39215" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGA</genome_strand>
        <mrna_strand>GAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581469" ref_strand="+" ref_description="SGN-E581469 [6683]">
      <seq>aaaagtttctaccttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaattttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaactgctacagatggatcattagtatgttctgatgattcggagttcattcaagcttcttgtgggggaatttgtataccccatttcctccaggggtgtatcttcataagtgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38918" stop="40585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39218" g_stop="39455" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="465" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="589" r_length="124" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.83"/>
            <acceptor a_prob="0.061" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40286" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="612" r_length="23" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E581469" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39218" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTCTAGCTTTTATTTGAGT-AGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGT--GGGAAATTGTATACCCCGTTTCCTCCA-GGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACT</genome_strand>
        <mrna_strand>AAAAGTTTCTACCTTTTATTTATTTGAATAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAATTTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCGGAGTTCATTCAAGCTTCTTGTGGGGGAATTTGTATACCCCATTTCCTCCAGG.....................................................................................GGTGTATCTTCATAAGTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581487" ref_strand="+" ref_description="SGN-E581487 [6692]">
      <seq>aaaagtttctaccttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaattttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaactgctacagatggatcattagtatgttctgatgattcggagttcattcaagcttcttgtggggaattgtataccccatttcctccagggtgtatcttcataaagtgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38918" stop="40484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39218" g_stop="39455" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="465" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="586" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.061" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40286" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="610" r_length="24" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E581487" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39218" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTCTAGCTTTTATTTGAGT-AGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCAT-AAGTGACACT</genome_strand>
        <mrna_strand>AAAAGTTTCTACCTTTTATTTATTTGAATAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAATTTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCGGAGTTCATTCAAGCTTCTTGTGGGGAATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGTATCTTCATAAAGTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481538" ref_strand="+" ref_description="SGN-E481538 [cSTD-18-F15]">
      <seq>aaagtttctagcttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacagaggaagaagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatttcctccagggtgcatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaaagtaaaggaattgcacgtgaagatgatgaaggaaatgtcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38919" stop="40664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39219" g_stop="39455" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="465" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="586" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.061" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40364" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="687" r_length="101" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E481538" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39219" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTAGCTTTTATTTGAGT-AGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAG-AGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCT</genome_strand>
        <mrna_strand>AAAGTTTCTAGCTTTTATTTATTTGAATAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAGAGGAAGAAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGCATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAAGTAAAGGAATTGCACGTGAAGATGATGAAGGAAATGTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570004" ref_strand="+" ref_description="SGN-E570004 [14520]">
      <seq>aaagtttctaccttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaattttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaactgctacagatggatcattagtatgttctgatgattcggagttcattcaagcttcttggtggggaattgtataacccatttcctccagggtgtatcttcataaagtgacacaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38919" stop="40484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39219" g_stop="39455" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="464" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="586" r_length="122" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.90"/>
            <acceptor a_prob="0.061" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40289" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="613" r_length="27" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E570004" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39219" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTAGCTTTTATTTGAGT-AGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTT-GTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCAT-AAGTGACACTGGG</genome_strand>
        <mrna_strand>AAAGTTTCTACCTTTTATTTATTTGAATAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAATTTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCGGAGTTCATTCAAGCTTCTTGGTGGGGAATTGTATAACCCATTTCCTCCAG.....................................................................................GGTGTATCTTCATAAAGTGACACAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569051" ref_strand="+" ref_description="SGN-E569051 [13430]">
      <seq>aaagtttctaccttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaactttgaaggcaattttgctttcattctctttgactctaaagcttccactcttttgcttgctagggatcgcgatggaagtgtgccattacactggggaactgctacagatggatcatcagtatgttctgatgattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38919" stop="40430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39219" g_stop="39455" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="465" r_length="242" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40130" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="538" r_length="73" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E569051" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39219" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTAGCTTTTATTTGAGT-AGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAAC-TTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAG</genome_strand>
        <mrna_strand>AAAGTTTCTACCTTTTATTTATTTGAATAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTTGAAGGCAATTTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTGCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAACTGCTACAGATGGATCATCAGTATGTTCTGATGATTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584931" ref_strand="+" ref_description="SGN-E584931 [10852]">
      <seq>ctagcttttatttgaacaaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagcctcgctcagacaggtccacagaaaaagatggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttggtgggcaatttgtatacnccattttcctccaggggtgtatcttcataaagtgacacagggttaattaagctttgatcatccaatggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38926" stop="40617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39226" g_stop="39455" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="468" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="593" r_length="125" r_score="0.893"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.76"/>
            <acceptor a_prob="0.061" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40317" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="650" r_length="57" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E584931" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39226" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTT-GTGGGAAATT-GTATACCCC-GTTTCCTCCA-GGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCAT-AAGTGACACTGGGCTAA-TAAGCTTTGATCATCCAAT-GCACA</genome_strand>
        <mrna_strand>CTAGCTTTTATTTGA--AC-AAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGAGCCTCGCTCAGACAGGTCCACAGAAAAAGATGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGGTGGGCAATTTGTATACNCCATTTTCCTCCAGG.....................................................................................GGTGTATCTTCATAAAGTGACACAGGGTTAATTAAGCTTTGATCATCCAATGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581488" ref_strand="+" ref_description="SGN-E581488 [6692]">
      <seq>taccttttatttatttgaataacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaattttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaactgctacagatggatcattagtatgttctgatgattcggagttcattcaagcttcttgtggggaattgtataccccatttcctccaggggtgtatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgcggaagatgatgaaaggaaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38927" stop="40659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39227" g_stop="39455" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="455" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="577" r_length="122" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.061" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40359" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="675" r_length="98" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E581488" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39227" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCA-GGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCG-TGAAGATGATG-AAGGAAATGTCA</genome_strand>
        <mrna_strand>TACCTTTTATTTATTTGAATAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAATTTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCGGAGTTCATTCAAGCTTCTTGTGGGGAATTGTATACCCCATTTCCTCCAGG.....................................................................................GGTGTATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGCGGAAGATGATGAAAGGAAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569829" ref_strand="+" ref_description="SGN-E569829 [14319]">
      <seq>ttttatttgaacaaacatgttggctgtgtttgagcaatccattgggaagccaccttcaggagctgagcctcgctcagnacaggtccacagaaaaagatggctaaaacaaaggaagagattgcagaaagtttcaaatcatgggaagccagactcaactttttaccacctttccaatgggaatttcatgggctttttcccatggaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttggctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaaggcttcttgtggggaatttgtataccccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38934" stop="40471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39231" g_stop="39455" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="469" r_length="242" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40171" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="585" r_length="116" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E569829" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39231" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCA-GAGCTGAGCGTTGCTCAG-ACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCAT-GGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCAT-GGCTTTTTCTCATGG-AAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTT-GCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAA-GCTTCTTGT-GGGAAATTGTATACCCCGTTT</genome_strand>
        <mrna_strand>TTTTATTTGA--A-CAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGGAGCTGAGCCTCGCTCAGNACAGGTCCACAGAAAAAGATGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGGCTTTTTCCCATGGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGGCTTCTTGTGGGGAATTTGTATACCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711700" ref_strand="+" ref_description="SGN-E711700 [FB02CH08]">
      <seq>cgtttaagtagtaaacatgttggctgtgtttgagcaatctatctgggaagccaccttcacagctgagcgttgctcacacagatagaccgaaaaaggaggctaaaacaaaggaagagattgaacaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctgggggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcgtcacagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgctacactggggaactgctacagatggatcattagtatgtgctgatgattcacagatcattctagcttcgtgagggaaattgtataccccgtttcctccaggttgaatcttcataagtgacactgggctaataagctttgatcatccagtgcacgaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtacaccaaactccacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactacggttgaatgaaacggaaaatttgaaactttgacgatcttcccaagttgagtcattattgtaatatgttaaatcacaaacgtatgctactttgtggcaatcttgttaaataatctgaaatcatatgttgctgcaataataatatttccatcatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38936" stop="40904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39234" g_stop="39455" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="464" r_length="241" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="585" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.90"/>
            <acceptor a_prob="0.061" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40611" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="931" r_length="346" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E711700" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39234" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTAT-TGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTG</genome_strand>
        <mrna_strand>CGTTTAAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATCTGGGAAGCCACCTTCACAGCTGAGCGTTGCTCACACAGATAGACCGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAACAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGGGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCGTCACAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGCTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTGCTGATGATTCACAGATCATTCTAGCTTCGTGAGGGAAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGAATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAGTGCACGAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAAATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAAT-ATGTTAAATCACAAAC-GTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581470" ref_strand="+" ref_description="SGN-E581470 [6683]">
      <seq>cttttatttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcaagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaattttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaactgctacagatggatcattagtatgttctgatgattcggagttcattcaagcttcttgtggggaattgtataccccatttcctccagggtgtatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaaggaatttgcacggcgaagatgatgaaaggaaatgtcaaatgcctgtgattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38930" stop="40636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39245" g_stop="39455" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="211" r_length="195" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="452" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="573" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.061" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40374" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="690" r_length="117" r_score="0.856"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E581470" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39245" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGT-AAAAGGAA-TTGCGC-GTGAAGATGATG-AAGGAAATGTC-AATG-CTGTGATTTTCC</genome_strand>
        <mrna_strand>TAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCA-AGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAATTTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCGGAGTTCATTCAAGCTTCTTGTGGGGAATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGTATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAAGGAATTTGCACGGCGAAGATGATGAAAGGAAATGTCAAATGCCTGTGATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564265" ref_strand="+" ref_description="SGN-E564265 [2514]">
      <seq>tatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagcctcgctcagacaggtccacagaaaaagatggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaatttgtataccccattttcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38943" stop="40476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39245" g_stop="39455" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="219" r_length="211" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="460" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40176" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="580" r_length="120" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E564265" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39245" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCC-GTTTCCTCC</genome_strand>
        <mrna_strand>TAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGAGCCTCGCTCAGACAGGTCCACAGAAAAAGATGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAATTTGTATACCCCATTTTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421424" ref_strand="+" ref_description="SGN-E421424 [STM-32-J6]">
      <seq>atttatttgaataaacatgttggctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacagaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38933" stop="40469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39245" g_stop="39455" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="207" r_length="196" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="448" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="560" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E421424" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39245" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGT</genome_strand>
        <mrna_strand>TAAACATGTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAGAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303440" ref_strand="+" ref_description="SGN-E303440 [cLEX-2-A5]">
      <seq>acatgttggctgtgtttgagcaatctattgggaagccaccttcagagctgagcgttgctcagacagatagacagaaaaaggaggctaaaacaaaggaagagattgaagaaagtttcaaatcatggaagccagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38948" stop="40647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39248" g_stop="39455" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="449" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="570" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40347" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="654" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E303440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39248" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATG</genome_strand>
        <mrna_strand>ACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486819" ref_strand="+" ref_description="SGN-E486819 [cSTE-23-I4]">
      <seq>gttggctgtgtttgagcaatccattgggaagccaccttcagagctgagccttgctcagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaattgtataccccatttcctccagggtgtatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38952" stop="40632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39252" g_stop="39455" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="433" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="553" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.061" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40332" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="622" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E486819" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39252" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTG</genome_strand>
        <mrna_strand>GTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGAGC----CT-TG-C---T---CAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGG-AATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGTATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483466" ref_strand="+" ref_description="SGN-E483466 [cSTE-9-D17]">
      <seq>gttggctgtgtttgagcaatccattgggaagccaccttcagagctgagccttgctcagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38952" stop="40471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39252" g_stop="39455" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="433" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40171" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="547" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E483466" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39252" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTT</genome_strand>
        <mrna_strand>GTTGGCTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGAGC----CT-TG-C---T---CAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459427" ref_strand="+" ref_description="SGN-E459427 [cPRO-27-H16]">
      <seq>ctgtgtttgagcaatccattgggaagccaccttcagagctgagtacacagaaaaaggaggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttctaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatttcctccagggtgtatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgcgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtataccaaactccacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactatggttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38957" stop="40756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39257" g_stop="39455" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="425" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="546" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.061" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40456" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="739" r_length="193" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E459427" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39257" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATG</genome_strand>
        <mrna_strand>CTGTGTTTGAGCAATCCATTGGGAAGCCACCTTCAGAGCTGA-----G-T---AC------ACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCTAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGTATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGCGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTATGGTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476399" ref_strand="+" ref_description="SGN-E476399 [cSTB-44-L11]">
      <seq>gagcaatccattgggaagccaccttcagagctgagcctcgctcagacaggtccacagaaaaagatggctaaaacaaaggaagagattgcagaaagtttcaaatcatggaagccagactcaactttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="38965" stop="40162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39265" g_stop="39455" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39862" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="394" r_length="203" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E476399" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39265" e_stop="39455"/>
          <exon e_start="39660" e_stop="39862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTC</genome_strand>
        <mrna_strand>GAGCAATCCATTGGGAAGCCACCTTCAGAGCTGAGCCTCGCTCAGACAGGTCCACAGAAAAAGATGGCTAAAACAAAGGAAGAGATTGCAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454007" ref_strand="+" ref_description="SGN-E454007 [cSTS-21-J6]">
      <seq>gtttcaaatcatggaagccagactcaacttttttaccacctttccaatgggaatttcatggctttttcccatgaaaatgaaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagaacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatttccntccaggtgcatcttcataagtgacacanggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgtgaagatgatgaaggaaatgtcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39059" stop="40664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39359" g_stop="39455" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="340" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="462" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.061" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40264" g_stop="40364" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="562" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E454007" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39359" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAAATCATGGAAGCCAGACTCAAC-TTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAG-ACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCC-TCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCT</genome_strand>
        <mrna_strand>GTTTCAAATCATGGAAGCCAGACTCAACTTTTTTACCACCTTTCCAATGGGAATTTCATGGCTTTTTCCCATGAAAATGAAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGAACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTTCCNTCCAG.....................................................................................G-TGCATCTTCATAAGTGACACANGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGTGAAGATGATGAAGGAAATGTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200612" ref_strand="+" ref_description="SGN-E200612 [cLEC-9-M17]">
      <seq>cagactcaactttttaccacctttcaaatgggaatttcatggctttttctcatggaaatgaaaaccctttccatccaaggtctattgtggtgatggatgacatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39077" stop="40471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39377" g_stop="39455" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="320" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40171" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="434" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E200612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39377" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTT</genome_strand>
        <mrna_strand>CAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584965" ref_strand="+" ref_description="SGN-E584965 [66681]">
      <seq>aaaaccctttacatccaaggtctattgtggtgatggatgatatattctgcatcttttctggtggtttagacaacacttttgatttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39348" stop="40453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39437" g_stop="39455" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39660" g_stop="39900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="260" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40058" g_stop="40153" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="356" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E584965" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39437" e_stop="39455"/>
          <exon e_start="39660" e_stop="39900"/>
          <exon e_start="40058" e_stop="40153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTTTCCATCCAAGGTATTAAAGTTTTGTTCTGAAACTAATTTGTTTCTTTTATAAAATGATAATGTGTTTTTTCTTGTTTGTGCTTGGATTTGTGTTGTTGTACATTGATGATGAGTGTATACATAAAGGGGGGATTTTTGTTATATTTCAAGACTAGAGGCAATAAACAAGGTGACTGACTAAAGGAGCTTGTTTTGTTTTGTGTAACATATATAGGTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGG</genome_strand>
        <mrna_strand>AAAACCCTTTACATCCAAG............................................................................................................................................................................................................GTCTATTGTGGTGATGGATGATATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568392" ref_strand="+" ref_description="SGN-E568392 [12667]">
      <seq>gtggtgatggatgatattttctgcatcttttctggtggtttagacaacacttttgattttgaggaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaatttgtataccccatttcctccagggtgtatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgcgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtataccaaactacacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactatggttgaatgagacggaagattttaaacttttgatgaaattcccaagttgagtcatgaatgtaataatgttcaatcacaaaatggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39367" stop="40832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39667" g_stop="39900" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="356" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.061" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40264" g_stop="40532" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="627" r_length="271" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E568392" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39667" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGA-TTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAAC-TTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCAC-AAACGGTAT</genome_strand>
        <mrna_strand>GTGGTGATGGATGATATTTTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTTGAGGAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAATTTGTATACCCCATTTCCTCCAG.....................................................................................GGTGTATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGCGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTACACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTATGGTTGAATGAGACGGAAGATTTTAAACTTTTGATGAAATTCCCAAGTTGAGTCATGAATGTAATAATGTTCAATCACAAAATGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374104" ref_strand="+" ref_description="SGN-E374104 [TUS-33-F3](-)">
      <seq>gtggtttagacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtacaccaaactccacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactacggttgaatgaaacggaagatttgaaactttgacgatcttcccaagttgagtcattattgtaataatgttaaatcacaaacggtatgctactttgtggcaatcttgttaaataatctgaaatcatatgttgctgcaataataatatttccatcatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39401" stop="40904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39701" g_stop="39900" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="321" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40264" g_stop="40612" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="670" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E374104" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39701" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGT</genome_strand>
        <mrna_strand>GTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242314" ref_strand="+" ref_description="SGN-E242314 [cLEE-3-G22]">
      <seq>gacaacacttttgatttgaggaaatattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattttccaagtggacttgtacaccaaactccacagcattccgcgccagggaagtgctgcgaattgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39409" stop="40736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39709" g_stop="39900" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="313" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40264" g_stop="40436" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="486" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E242314" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39709" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCT</genome_strand>
        <mrna_strand>GACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG.....................................................................................GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAAGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCCAGGGAAGTGCTGCGAATTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611923" ref_strand="+" ref_description="SGN-E611923 [61680]">
      <seq>gaaacattatggtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagttttaagggatcgggcaccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatttcctccagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39429" stop="40481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39729" g_stop="39900" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="293" r_length="121" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E611923" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39729" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG</genome_strand>
        <mrna_strand>GAAACATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCACCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTTCCTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578421" ref_strand="-" ref_description="SGN-E578421 [LE12DG08]">
      <seq>gtctttcaagacaagctacagaagctatgataatggttgaggcttacaaagtttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggtttcttaatcaaatcctcttttaagtttaatctgatgtttttggagatccagcggaattcaatgtgttaaagctgattgtacaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtacaccaaactccacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactacggttgaatgaaacggaagatttgaaactttgacgatcttcccaagttgagtcattattgtaataatgttaaatcacaaacggtatgctactttgtggcaatcttgttaaataatctgaaatcatatgttgctgcaataataatatttccatcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39440" stop="40904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39740" g_stop="39900" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40613" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="716" r_length="556" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E578421" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578421" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39740" e_stop="39900"/>
          <exon e_start="40058" e_stop="40613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTT</genome_strand>
        <mrna_strand>GTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAG-TTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551546" ref_strand="+" ref_description="SGN-E551546 [cTSB-1-B14]">
      <seq>gctatgataatggttgaggcttacaaagttttaagggatcgggcgccataccctcctgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactataaagcctccactctttttcttgctagggatcgcgatggaagtgtgccgttacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccgtttcctccaggtttcttaatcaaatcctcttttaagtttaatctgatgtttttggagatccagcggaattcaatgtgttaaagctgattgtacaggttgtatcttcataagtgacactgggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcgcgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtacaccaaactccacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactacggttgaatgaaacggaagatttgaaactttgacgatcttcccaagttgagtcattattgtaataatgttaaatcacaaacggtatgctactttgtggcaatcttgttaaataatctgaaatcatatgttgctgcaataataatatttccatcatcaatcgactgtttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39463" stop="40918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39763" g_stop="39900" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40618" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="699" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E551546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39763" e_stop="39900"/>
          <exon e_start="40058" e_stop="40618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTTTCTTA</genome_strand>
        <mrna_strand>GCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559901" ref_strand="-" ref_description="SGN-E559901 [19471]">
      <seq>tgatcaagtcatcaaagaacttgaaggcaaatttgctttcattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaaattgtataccccatttcctccagggtgcatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtataccaaactccacagcattccgcgacaggggaagtgctgcaaattgggctggtgctactacggttgaatgagatggaagattttaaactttgacgatcttcccaagttgagtcatgaatgtaataatgttaaatcacaaatggtatgctactttatggccatcttatgaaataatctgaaatcatatgttgctgcaataatttttccatgcatcaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39519" stop="40887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39819" g_stop="39900" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="203" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.061" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40264" g_stop="40585" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="526" r_length="323" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="559"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E559901" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559901" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39819" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCG-CAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATA</genome_strand>
        <mrna_strand>TGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGCATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTCCACAGCATTCCGCGACAGGGGAAGTGCTGCAAATTGGGCTGGTGCTACTACGGTTGAATGAGATGGAAGATTTTAAACTTTGACGATCTTCCCAAGTTGAGTCATGAATGTAATAATGTTAAATCACAAATGGTATGCTACTTTATGGCCATCTTATGAAATAATCTGAAATCATATGTTGCTGCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421425" ref_strand="-" ref_description="SGN-E421425 [STM-32-J6]">
      <seq>atcaagtcatcaaagaacttgaaggcaaattgctttccattctctttgactctaaagcttccactctttttcttgctagggatcgcgatggaagtgtgccattacactggggaattgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtggggaaattgtataccccatttcctccagggtgcatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtataccaaactccacagcattccgcgcaggggaagtgctgcaaattgggctggtgctactacggttgaatgagatggaagattttaaactttgacgatcttcccaagttgagtcatgaatgtaataatgttaaatcacaaatggtatgctactttatggccatcttatgaaataatctgaaatcatatgttgctgcaataatttttccatcatcaaaaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39521" stop="40887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39821" g_stop="39900" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157">
            <donor d_prob="0.954" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40058" g_stop="40178" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="202" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.061" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40264" g_stop="40614" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="550" r_length="348" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E421425" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421425" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39821" e_stop="39900"/>
          <exon e_start="40058" e_stop="40178"/>
          <exon e_start="40264" e_stop="40614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGGGTGAGTGATAAAGTTACTTATAGACGATTCTCTAACGTACTATCACACGTTAAACTATATTGATAGTGGAAAAGAATCTGAATGTTATGATCAGTATATGTAACATAACTAGCTCCTTTATCAGAATAAACTTGATGTATCTCCAAACAATGTATAGGATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGT-GGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTTT</genome_strand>
        <mrna_strand>ATCAAGTCATCAAAGAACTTGAAGGCAAATTGCTTTCCATTCTCTTTGACTCTAAAGCTTCCACTCTTTTTCTTGCTAGG.............................................................................................................................................................GATCGCGATGGAAGTGTGCCATTACACTGGGGAATTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGGAAATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGCATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCAAATTGGGCTGGTGCTACTACGGTTGAATGAGATGGAAGATTTTAAACTTTGACGATCTTCCCAAGTTGAGTCATGAATGTAATAATGTTAAATCACAAATGGTATGCTACTTTATGGCCATCTTATGAAATAATCTGAAATCATATGTTGCTGCAATAAT--T-TTTCCATCATCAAAAAAAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462845" ref_strand="+" ref_description="SGN-E462845 [cPRO-12-J22]">
      <seq>cgcgatggaagtgtgtcattacactggggaactgctacagatggatcattagtatgttctgatgattcagagttcattcaagcttcttgtgggaatttgtataccccatttcctccaggtttcttaatcaaatcctcttaagtttaattcgatgtttttggatatcaagtggaacttaatgtgttaaagctgattgtacagggtgtatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgcgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtataccaaactacacagcattccgcgcaggggaagtgctgcgaattgggctggtgctactatggttgaatgagacggaagattttaaactttgatgaacttcccaagttgagtcatgaatgtaataatgttaaatcacaaatggtatgctactttatggccatcttatgaaataatctgaaatcatatgttgctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39761" stop="40891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40061" g_stop="40591" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E462845" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40061" e_stop="40591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATA</genome_strand>
        <mrna_strand>CGCGATGGAAGTGTGTCATTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAATTTGTATACCCCATTTCCTCCAGGTTTCTTAATCAAATCCTC--TTAAGTTTAATTCGATGTTTTTGGATATCAAGTGGAACTTAATGTGTTAAAGCTGATTGTACAGGGTGTATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGCGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTACACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTATGGTTGAATGAGACGGAAGATTTTAAACTTTGATGAACTTCCCAAGTTGAGTCATGAATGTAATAATGTTAAATCACAAATGGTATGCTACTTTATGGCCATCTTATGAAATAATCTGAAATCATATGTTGCTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605140" ref_strand="+" ref_description="SGN-E605140 [21053]">
      <seq>gttcattcaagcttcttgtggganattgtataccccatttcctccagggtgcatcttcataagtgacacagggctaataagctttgatcatccaatgcacaaagtaaaaggaattgcacgtgaagatgatgaaggaaatgtcaatgctgtgattttccaggtggacttgtataccaaactccacagcattccgcgcaggggaagtgctgcaaattgggctggtgctactacggttgaatgagatggaagattttaaactttgacgatcttcccaagttgagtcatgaatgtaataatgttaaatcacaaatggtatgctactttatggccatcttatgaaataatctgaaatcatatgttgctgcaataatttttccatcatcaatcgactgtttctcactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="39832" stop="40925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40132" g_stop="40178" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.061" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40264" g_stop="40624" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="405" r_length="358" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="437"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E605140" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40132" e_stop="40178"/>
          <exon e_start="40264" e_stop="40624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTTTCTTACTAAAC</genome_strand>
        <mrna_strand>GTTCATTCAAGCTTCTTGTGGGANATTGTATACCCCATTTCCTCCAG.....................................................................................GGTGCATCTTCATAAGTGACACAGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCACGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTATACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCAAATTGGGCTGGTGCTACTACGGTTGAATGAGATGGAAGATTTTAAACTTTGACGATCTTCCCAAGTTGAGTCATGAATGTAATAATGTTAAATCACAAATGGTATGCTACTTTATGGCCATCTTATGAAATAATCTGAAATCATATGTTGCTGCAATAAT--T-TTTCCATCATCAATCGACTGTTTCTCACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617771" ref_strand="+" ref_description="SGN-E617771 [66625]">
      <seq>gtcatcagtcagaccagcacgacaaacatgagaaccaacatggtcatcagtcagaccagcacgacaaacatgagaaccaacatggtcatcagtcagagcagcaagaggaagaaatcacaaacgatatccccgacccanccacaccccaatcctgaatccaagaaaaagaaactttatatgtaataatgttatgtagcttcagccaaaaaacagtatacactgtctaagaaggtaactatttacaaggaacttaataaaacttgttttagttgaattgatttgatcacaaaaaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41687" stop="40791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41387" g_stop="41092" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="312"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E617771" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41387" e_stop="41092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAATTGATTTGATCACACTAAAAGA</genome_strand>
        <mrna_strand>GTCATCAGTCAGACCAGCACGACAAACATGAGAACCAACATGGTCATCAGTCAGACCAGCACGACAAACATGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGAGGAAGAAATCACAAACGATATCCCCGACCCANCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTTATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATACACTGTCTAAGAAGGTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAATTGATTTGATCACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218684" ref_strand="+" ref_description="SGN-E218684 [cLEL-18-P18](-)">
      <seq>gggcatcagggtcatcagttagaccagctcgacacacattagaaccaacatggtcatcaatcagagaagcaagaggaagatatcacaaacaatatccccgacccacccacaccccaatcctgaatccaagaaaaagaaacttaatatgtaataatgttatgtagcttcagccaaaaaacagtatatactgtctaagaagctaactatttacaaggaacttaataaaacttgttttagttgaattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41651" stop="40810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41356" g_stop="41094" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E218684" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41356" e_stop="41094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAATTGATTTGATCACACTAAAA</genome_strand>
        <mrna_strand>GGGC-ATCAGGGTCATCAGTTAGACCAGCTCGACACACATTAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAATTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322381" ref_strand="+" ref_description="SGN-E322381 [cTOB-24-B8]">
      <seq>acgtttaggatttggtcgtggaagtagcagaggaacaggtggttctgatacctctgatcagtatgctactgaggaccccggttggagtattgagggatgtggttatgtatgtccaggcaacagtcctagtggaggactcactgaattccatatctcaggaatatcacatttcagtgaaccttacagatgtagcccagatgtatgtgacactgaagaatgtggtgagtttcttctacgctttgtttctccaatgcataacaaacacgagaaccaacatggtcatcagtcagagcagcaagacaagcatgagaacaaacacggtcatcagttagaccagcacgacacacatgagaaccaacatggtcatcaatcagagaagcaagaggaagatatcacaaacaatatccccgacccacccacaccccaatcctgaatccaagaaaaagaaacttaatatgtaataatgttatgtagcttcagccaaaaaacagtatatactgtctaagaagctaactatttacaaggaacttaataaaacttgttttagttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41965" stop="40814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41665" g_stop="41114" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E322381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41665" e_stop="41114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTGGTTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCAGGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAAGAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCAATGCATAACAAACACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAA</genome_strand>
        <mrna_strand>ACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTGGTTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCAGGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAAGAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCAATGCATAACAAACACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322847" ref_strand="+" ref_description="SGN-E322847 [cTOB-30-N19]">
      <seq>acgtttacgatttggtcgtggaagtatcacaggaacaggtggttctgatacctctgatcaatatgctactgatgaccccggttggagtattgagggatgtggctatgtatgtccaggcaacagtcctagtggaggactcactgaattccatatctcatgaatatcacatttcagtgaaccttacagatgtagcccagatgtatgtgacactgagaaatgtggtgagtttcttctacgctttgtttctccactgcatatcaaacacgagtaaccaacatggtcatcagtcatagcaacaagacaagcatgagaacaaacacggtcatcagttagaccagcacgacacacatgagaaccagcatggtcttcaatcagagaagcaagatgaagatatcggcaaacaatatccccgacccacccacaccccaatcctgaatccaagaaaaagaaacttaatatgtaataatgttatgtagcttcagccaaaaaacagcatatactgtctaagaagctaactatttacgaggaacttcatacaacttgttttcgttgaacttccccttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41965" stop="40812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41665" g_stop="41115" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E322847" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41665" e_stop="41115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTGGTTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCAGGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAAGAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCAATGCATAACAAACACGAG-AACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATC-ACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGA</genome_strand>
        <mrna_strand>ACGTTTACGATTTGGTCGTGGAAGTATCACAGGAACAGGTGGTTCTGATACCTCTGATCAATATGCTACTGATGACCCCGGTTGGAGTATTGAGGGATGTGGCTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCATGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAGAAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCACTGCATATCAAACACGAGTAACCAACATGGTCATCAGTCATAGCAACAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAGCATGGTCTTCAATCAGAGAAGCAAGATGAAGATATCGGCAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGCATATACTGTCTAAGAAGCTAACTATTTACGAGGAACTTCATACAACTTGTTTTCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237035" ref_strand="+" ref_description="SGN-E237035 [cLEL-7-O17](-)">
      <seq>acgagaaccaacatggtcatcagtcagagcagcaagacaagcatgagaacaaacacggtcatcagttagaccagcacgacacacatgagaaccaacatggtcatcaatcagagaagcaagaggaagatatctcaaacaatatccccgacccacccacaccccaatcctgaatccaagaaaaagaaacttaatatgtaataatgttatgtagcttcagccaaaaaacagtatatactgtctaagaagctaactatttacaaggaacttaataaaacttgttttagttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41702" stop="40814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41402" g_stop="41115" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="306"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E237035" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41402" e_stop="41115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGA</genome_strand>
        <mrna_strand>ACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCTCAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236851" ref_strand="+" ref_description="SGN-E236851 [cLEL-7-O17](-)">
      <seq>catggtcatcagtcagagcagcaagacaagcatgagaacaaacacggtcatcagttagaccagcacgacacacatgagaaccaacatggtcatccatcagagaagcaagaggaagatatctcaaacaatatccccgacccacccacaccccaatcctgaatccaagaaaaagaaacttaatatgtaataatgttatgtagcttcatccaaaaaacagtatatactgtctaagaagctaactatttgcaaggtacttaataaaacttgttttagttgaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41691" stop="40814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41391" g_stop="41115" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="278" polyA_stop="297"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E236851" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41391" e_stop="41115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGA</genome_strand>
        <mrna_strand>CATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCCATCAGAGAAGCAAGAGGAAGATATCTCAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCATCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTGCAAGGTACTTAATAAAACTTGTTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321681" ref_strand="+" ref_description="SGN-E321681 [cTOB-25-N22]">
      <seq>ttatgtgtgtcttgttaataatcctagtggagaagtcacagaattcaaaatctcaggattatcacacttcaccaaaccatacagatgcaaaccaggaccaaacatgcgcggagacaaagattttaaccatgaacttcttctaaactttgtttctacaatgctggacaaacaacaacatctacacagtggagatgtaggtcaccatgtagggggagctagacgtttaggatttggtcgtggaagtagcagaggaacaggtggttctgatacctctgatcagtatgctactgaggaccccggttggagtattgagggatgtggttatgtatgtccaggcaacagtcctagtggaggactcactgaattccatatctcaggaatatcacatttcagtgaaccttacagatgtagcccagatgtatgtgacactgaagaatgtggtgagtttcttctacgctttgtttctccaatgcataacaaacacgagaaccaacatggtcatcagtcagagcagcaagacaagcatgagaacaaacacggtcatcagttagaccagcacgacacacatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42184" stop="41012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41884" g_stop="41312" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E321681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41884" e_stop="41312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTAGGTCACCATGTAGGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTGGTTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCAGGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAAGAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCAATGCATAACAAACACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAA</genome_strand>
        <mrna_strand>TTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTAGGTCACCATGTAGGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTGGTTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCAGGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAAGAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCAATGCATAACAAACACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216124" ref_strand="+" ref_description="SGN-E216124 [cLEL-13-I18](-)">
      <seq>ttatgcattggagaaacaaagcgtagaagaaactcaccacattcttcagtgtcacatacatctgggctacatctgtaaggttcactgaaatgtgatattcctgagatatggaattcagtgagtcctccactaggactgttgcctggacatacataaccacatccctcaatactccaaccggggtcctcagtagcatactgatcagaggtatcagaaccacctgttcctctgctacttccacgaccaaatcctaaacgtctagctccccctacatggtgacctacatctccactgtgtagatgttgttgtttgtccagcattgtagaaacaaagtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="41108" stop="42045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41408" g_stop="41745" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E216124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41408" e_stop="41745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCATTGGAGAAACAAAGCGTAGAAGAAACTCACCACATTCTTCAGTGTCACATACATCTGGGCTACATCTGTAAGGTTCACTGAAATGTGATATTCCTGAGATATGGAATTCAGTGAGTCCTCCACTAGGACTGTTGCCTGGACATACATAACCACATCCCTCAATACTCCAACCGGGGTCCTCAGTAGCATACTGATCAGAGGTATCAGAACCACCTGTTCCTCTGCTACTTCCACGACCAAATCCTAAACGTCTAGCTCCCCCTACATGGTGACCTACATCTCCACTGTGTAGATGTTGTTGTTTGTCCAGCATTGTAGAAACAAAGTTTAG</genome_strand>
        <mrna_strand>TTATGCATTGGAGAAACAAAGCGTAGAAGAAACTCACCACATTCTTCAGTGTCACATACATCTGGGCTACATCTGTAAGGTTCACTGAAATGTGATATTCCTGAGATATGGAATTCAGTGAGTCCTCCACTAGGACTGTTGCCTGGACATACATAACCACATCCCTCAATACTCCAACCGGGGTCCTCAGTAGCATACTGATCAGAGGTATCAGAACCACCTGTTCCTCTGCTACTTCCACGACCAAATCCTAAACGTCTAGCTCCCCCTACATGGTGACCTACATCTCCACTGTGTAGATGTTGTTGTTTGTCCAGCATTGTAGAAACAAAGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321670" ref_strand="+" ref_description="SGN-E321670 [cTOB-25-J22]">
      <seq>atgtgtgtcttgttaataatcctagtggagaagtcacagaattcaaaatctcaggattatcacacttcaccaaaccatacagatgcaaaccaggaccaaacatgcgcggagacaaagattttaaccatgaacttcttctaaactttgtttctacaatgctggacaaacaacaacatctacacagtggagatgtaggtcaccatgtaaggggagctagacgtttaggatttggtcgtggaaatatcagaggaacaggtggttctgatacctctgatcagtatgctactgaggaccccggttggagtattgagggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42182" stop="41265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41882" g_stop="41565" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E321670" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41882" e_stop="41565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTAGGTCACCATGTAGGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTG</genome_strand>
        <mrna_strand>ATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTAGGTCACCATGTAAGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAATATCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327771" ref_strand="+" ref_description="SGN-E327771 [cTOC-20-D9]">
      <seq>ataatcaaatcaaagtctttttcttaaataaacttagctaaaatggcagctccaacatgtttgaacatttgttttatggttttgctaagcttagcaatatgctctgcccagcctattgaagttgatcatcatcacaaccacaaagctcacgctttgagtaatatcggaggaggcagtgatggcggattaggcattggtggtggtggaggtggatttggcattggctttggtgttggtgttggcgttggtggtggaagatttgggtttggcattggtggaggtgtccctggttatatacctggctttgatttcccagtctattcccctgattgtggttatgtgtgtcttgttaataatcctagtggagaagtcacagaattcaaaatctcaggattatcacacttcaccaaaccatacagatgcaaaccaggaccaaacatgcgcggagacaaagattttaaccatgaacttcttctaaactttgtttctacaatgctggacaaacaacaacatctacacagtggagatgtangtcaccatgtanggggagctagacgtttaggatttggtcgtggaagtagcagaggaacaggtggttctgatacctctgatcagtatgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42519" stop="41296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42219" g_stop="41596" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E327771" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42219" e_stop="41596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAAAATGGCAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGGCATTGGTGGAGGTGTCCCTGGTTATATACCTGGCTTTGATTTCCCAGTCTATTCCCCTGATTGTGGTTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTAGGTCACCATGTAGGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACT</genome_strand>
        <mrna_strand>ATAATCAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAAAATGGCAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGGCATTGGTGGAGGTGTCCCTGGTTATATACCTGGCTTTGATTTCCCAGTCTATTCCCCTGATTGTGGTTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTANGTCACCATGTANGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326061" ref_strand="+" ref_description="SGN-E326061 [cTOC-16-K17]">
      <seq>tcaaatcaaagtctttttcttaaataaacttagctaaaatggcagctccaacatgtttgaacatttgttttatggttttgctaagcttagcaatatgctctgcccagcctattgaagttgatcatcatcacaaccacaaagctcacgctttgagtaatatcggaggaggcagtgatggcggattaggcattggtggtggtggaggtggatttggcattggctttggtgttggtgttggcgttggtggtggaagatttgggtttggcattggtggaggtgtccctggttatatacctggctttgatttcccagtctattcccctgattgtggttatgtgtgtcttgttaataatcctagtggagaagtcacagaattcaaaatctcaggattatcacacttcaccaaaccatacagatgcaaaccaggaccaaacatgcgcggagacaaagattttaaccatgaacttcttctaaactttgtttctacaatgctgggacaacaacaacatctacacagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42515" stop="41396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42215" g_stop="41696" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E326061" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42215" e_stop="41696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAAAATGGCAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGGCATTGGTGGAGGTGTCCCTGGTTATATACCTGGCTTTGATTTCCCAGTCTATTCCCCTGATTGTGGTTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGG</genome_strand>
        <mrna_strand>TCAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAAAATGGCAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGGCATTGGTGGAGGTGTCCCTGGTTATATACCTGGCTTTGATTTCCCAGTCTATTCCCCTGATTGTGGTTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGGACAACAACAACATCTACACAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689304" ref_strand="+" ref_description="SGN-E689304 [t3_tus_80_P21]">
      <seq>ccattaaaatcaaagtctttttcttaaataaacttagctaactttgaagctccaacatgtttgaacatttgttttatggttttgctaagcttagcaatatgctctgcccagcctattgaagttgatcatcatcacaaccacaaagctcacgctttgagtaatatcggaggaggcagtgatggcggattaggcattggtggtggtggaggtggatttggcattggctttggtgttggtgttggcgttggtggtggaagatttgggtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="42517" stop="41651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42219" g_stop="41951" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E689304" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42219" e_stop="41951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAAAATGGCAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGG</genome_strand>
        <mrna_strand>CCATTAAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAACTTTGAAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700517" ref_strand="+" ref_description="SGN-E700517 [FA13BD09]">
      <seq>aaaacagcataaaagaggagaaatttcgtattgttctttgagggtatttacttcacttctcattgagaaatagagaatctgaaagaatcgagaatgggcggaggaggatcagtgaaggaagttcaatcgaaggcggagcttgataagattgtcgccgacggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagtcttttcgcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgtaccttactttgtcttcttcaaggaagggaaagctgttgatacattggaaggggccgatccatctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggagttgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagtattgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagtcgttgatatcttgaagaaagagaaggtcaaatttggaagttttgatattctgatggacagtgaggtccgtgagggtctgaagaaattttccaattggccaacatatcctcaactgtactgcaagggtgaacttcttgggtggttgtgatattgttataactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45154" stop="50299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45454" g_stop="45723" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="345" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49999" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="818" r_length="473" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E700517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45454" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGCATAAAAGAGGAGAAATTTCGTATTGTTCTTTGAGGGTATTTACTTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTGCAAGGGTGAACTTCTT-GGTGGTTGTGATATTGTTATAACTATGC</genome_strand>
        <mrna_strand>AAAACAGCATAAAAGAGGAGAAATTTCGTATTGTTCTTTGAGGGTATTTACTTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTGCAAGGGTGAACTTCTTGGGTGGTTGTGATATTGTTATAACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406499" ref_strand="+" ref_description="SGN-E406499 [PPI-4-A15]">
      <seq>cttcacttctcatagagaaatagagaatctgaaagaatcgagaatgggcggaggaggatcagtgaaggaagttcaatcaaagacggagcttgataagattgtcgccgatggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagtcttttctcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacctaagtgtggttttagtcagaaagtcgttgacatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45204" stop="50149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45504" g_stop="45723" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="295" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49849" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="617" r_length="322" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E406499" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45504" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGA</genome_strand>
        <mrna_strand>CTTCACTTCTCATAGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCAAAGACGGAGCTTGATAAGATTGTCGCCGATGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCTAAGTGTGGTTTTAGTCAGAAAGTCGTTGACATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439092" ref_strand="+" ref_description="SGN-E439092 [cSTA-10-L4]">
      <seq>cttcacttctcatagagaaatagagaatctgaaagaatcgagaatgggcggaggaggatcagtgaaggaagttcaatcaaagacggagcttgataagattgtcgccgatggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagtcttttctcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacctaagtgtggttttagtcagaaagtcgttgacatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45204" stop="50149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45504" g_stop="45723" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="295" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49849" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="617" r_length="322" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E439092" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45504" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGA</genome_strand>
        <mrna_strand>CTTCACTTCTCATAGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCAAAGACGGAGCTTGATAAGATTGTCGCCGATGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCTAAGTGTGGTTTTAGTCAGAAAGTCGTTGACATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317828" ref_strand="+" ref_description="SGN-E317828 [cTOA-30-F23]">
      <seq>ttcacttctcattgagaaatagagaatctgaaagaatcgagaatgggcggaggaggatcagtgaaggaagttcaatcgaaggcggagcttgataagattgtcgccgacggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagtcttttcgcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgtaccttactttgtcttcttcaaggaagggaaagctgttgatacattggaaggggccgatccatctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggagttgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagtattgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagtcgttgatatcttgaagaaagagaagtcaaatttggaaagtttgatattctgatggacagtgaggtccgtgagggtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45205" stop="50215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45505" g_stop="45723" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="294" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49915" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="681" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E317828" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45505" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGA</genome_strand>
        <mrna_strand>TTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAA-GTCAAATTTGGAAAGTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701669" ref_strand="+" ref_description="SGN-E701669 [FA16CE03]">
      <seq>gagaaatagagaatctgaaagaatcgagaatgggcggaggaggatcagtgaaggaagttcaatcgaaggcggagcttgataagattgtcgccgacggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagtcttttcgcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgtaccttactttgtcttcttcaaggaagggaaagctgttgatacattggaaggggccgatccatctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggagttgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagtattgcttttcatgaaagggaccccacaagaacccaagtgtggttttagtcagaaagccgttgatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45218" stop="50147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45518" g_stop="45723" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49847" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="601" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E701669" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45518" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTT</genome_strand>
        <mrna_strand>GAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCACAAGAACCCAAGTGTGGTTTTAGTCAGAAAGCCGTTGATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606183" ref_strand="+" ref_description="SGN-E606183 [22120]">
      <seq>gatcagtgaaggaagtcaatcaaagacggagcttgataagattgtagccgatggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagttttttctcatctttctactgatttcccacatgcccattttccgagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagttgttgacatcttgaagaaagagaaggtcaaatttggaagttttgatattctgacggacaatgaggtccgtgaggggttgaagaaattttccaattggccaacatatcctcaatgtactgcaaagggtgaaacttctgggtggttgtgatattgttataacttatgcatgagagtggtgaacttacagatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45260" stop="50327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45560" g_stop="45723" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="238" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="50027" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="740" r_length="502" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E606183" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45560" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="50027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTGC-AAGGGTG-AACTTCTTGGTGGTTGTGATATTGTTATAAC-TATGCATGAGAGTGGTGAACTTACAGATGTTTT</genome_strand>
        <mrna_strand>GATCAGTGAAGGAAG-TCAATCAAAGACGGAGCTTGATAAGATTGTAGCCGATGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTTTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCCGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTTGTTGACATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGACGGACAATGAGGTCCGTGAGGGGTTGAAGAAATTTTCCAATTGGCCAACATATCCTCAA-TGTACTGCAAAGGGTGAAACTTCTGGGTGGTTGTGATATTGTTATAACTTATGCATGAGAGTGGTGAACTTACAGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606190" ref_strand="+" ref_description="SGN-E606190 [22128]">
      <seq>gatcagtgaaggaagttcaatcaaagacggagcttgataagattgtagccgatggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagttttttctcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagttgttgacatcttgacagaaacgcagaaggtcaaattttggacacgtttccgatattctgacggacaatgaggtccgtgaggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45260" stop="50177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45560" g_stop="45723" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="239" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49912" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="631" r_length="392" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E606190" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45560" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGA-AGAAA-G-AGAAGGTCAAA-TTTGGA-A-GTTT-TGATATTCTGATGGACAGTGAGGTCCGTGAGGGTC</genome_strand>
        <mrna_strand>GATCAGTGAAGGAAGTTCAATCAAAGACGGAGCTTGATAAGATTGTAGCCGATGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTTTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTTGTTGACATCTTGACAGAAACGCAGAAGGTCAAATTTTGGACACGTTTCCGATATTCTGACGGACAATGAGGTCCGTGAGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483495" ref_strand="+" ref_description="SGN-E483495 [cSTE-9-L17]">
      <seq>gtgaaggaagttcaatcaaagacggagcttgataagattgtcgccgatggatcaccggcgattttgcacttttgggcatcatggtgtgacgcttctaagcacatggaccaagtcttttctcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctgnggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgacttcagcagctagtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagtcgttgacatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45265" stop="50149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45565" g_stop="45723" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49849" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="556" r_length="322" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E483495" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45565" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGA</genome_strand>
        <mrna_strand>GTGAAGGAAGTTCAATCAAAGACGGAGCTTGATAAGATTGTCGCCGATGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGACGCTTCTAAGCACATGGACCAAGTCTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGNGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTAGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGACATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444078" ref_strand="+" ref_description="SGN-E444078 [cSTA-41-E10]">
      <seq>aggaagttcaatcaaagactgagcttgataagattgtcgccgatggatcaccggcgattttgcacttttgggcatcatggtgtgaagcttctaagcacatggaccaagtcttttctcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgtcttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45269" stop="50104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45569" g_stop="45723" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="230" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49804" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="507" r_length="277" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E444078" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45569" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAG</genome_strand>
        <mrna_strand>AGGAAGTTCAATCAAAGACTGAGCTTGATAAGATTGTCGCCGATGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGTCTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568764" ref_strand="+" ref_description="SGN-E568764 [13097]">
      <seq>gtgaagcttctaagcacatggaccaagtcttttctcatctttctactgatttcccacatgcccattttctaagagttgaagctgaagaacagcctgagatatctgagctgcactctgtttctgctgttccttactttgtcttcttcaaggaaggtaaggctgttgatacattggaaggggccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctaggaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctagagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgtcttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagtcgttgacatcttgaagaaagagaaggtcaaatttggaagttttgatattctgacggacaatgaggttcgtgaggggttgaagaaattttccaattggccaacatatcctcaactgtactacaagggtgaactttcttgggtggttgtgatattgtctcataactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="45350" stop="50298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45650" g_stop="45723" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47896" g_stop="47970" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="149" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49528" g_stop="49998" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="624" r_length="475" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E568764" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45650" e_stop="45723"/>
          <exon e_start="47896" e_stop="47970"/>
          <exon e_start="49528" e_stop="49998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGAGTAAGCAAAATCTTCTCACTTTGTGCATATATGGAAGAGAAGCCCAAAAAGATTGTATCTTTTTTAATTTATCGATCGATTTCTGGTTTTATTTTTGGTTATATGACTGGCGCTGTTATATTTCTTACTGAGAAAGGTAAAATAAGATAGGTTATGGAATTTTGAATGATCTTGAAATATATTGATGCGTTATTGATTGATTTTCTGCTTGATATGTTCTTGTTGGGGGTTGTTTAGTTTTTGTTCCCCTTTAACTAAGGTGTGAAGGGTTAAGAGTTTTTGTACACTTCTTTTGTGAAACTTTATTGGAGATGGACCAAGTTTATATCTTTTTAATTTATTGGTTGAGTTCTGGTATTTTATTGAATGGTTTTTGATGTGGCTTATGGAATTTTGAATGAATTGTTGGATTGCTATTTTCTGTTTGATATGCTCTTTTGTTTGGAGGGGGTTCTCTGGGTTTGTTTTTTATTGCTGTGCTTTGAGGGTTTAGGGTTTTGTTGTTCATTATTCAGTTTTCACATGTAATAAAACTCAGAAAGTATATATATTTTAATTCTTTATATCGATATCAATACAGTCCAGTGGTTTAGGCATAGGAGTGACAACTTGGAGATTATTGGTTTGAATTTGGGTTATAACACCAGGGTGTTTAGCCTTGGTGAGCAGGTTTACCATTGGTAGATTAGTCAAATGTGTGCAAGCCAGTACCTGGTACCACCTTCATTAGTAAAAATGGCAGTTCATAAGATTTTGGACGAACTACAAAGCTTTGTGATGTGCTATTGAAAGATATGCTTTAAAGGGTTTTGGACATATTGTTTCTGTTTGGAGTGTTTTTTTTTAATGTTTGTTTTGGGAAGATATGCTTTAAATGGTTTATGGTTCTGTAGTGAATGTAGATCATTCTTGTAGTGACAATGAGATTTCTCCTTTTGCACAGTAAGTCTTGGTTTGTAGTAAACAATTGTTTTGATAAGATATATAATTTTATTAATTCGGGAAAGCACTTGTGTACGAGCAGTATGCCAAGATATAGATAATCTATACCAAAATATGGTTCTCCATTAATGACACTCAATCTTCTATACAATAGGCTAACTTTGGTGAAATTTTAGGGTGCTACTGTTAAGAGTTTTTTGGTCAAACTTGGTACTAATAGAAATAAGCTTTGCTCTATTAGGCAACTATTATTACCTCTTATAAGCTCATTGTCACATTCTTTGGTAGATGTTGAAGAAATAAAAGCAGTTTGAGGAAATGAACATGCATTATTTACTCAAATAAACACAAAAAGTTAGGGAAAAACAAGTACTTCTTTGTTCCAATTTATGTGGTACCATTTGACTTGCACAAAGTTTAAAGTAAGAAAGGAAGACTTTTAACATTGTGGTTTAAAACAGACCTTAGTCTTTTGTGCGGCTATAAATCAATTCATTTTAAGGGTAAAAGAGGAAATTTTGAAGTGAATTTTTCCTGATTATAGAAAGGTGACATTCTTTTTGGGACAGACTGGAATAGAAAGCGTGTCACATAAATTGGGATAGAAGAATAACTATGAATTTATTTCCCTGAATGGATGCACTGAGTATATGAGTTCTTGTGGTTACCCAGCTATGTTATATAAATATGAGGACTTTGTAGTACCAAGTTTTTTTGGGGAGGGTGGAGATAGTTATTGCTCTGTTGATTTTCTTCAGTCTTAACTCTTACCTCAATTTGGTAGTTCAATTTTTTAAGCAAGTTGAGAAAATGAACGCCCGTGATAACTCAAATAGACACAGAAAAGATAAGGAAAAAGCTTTTAACTAAGAACTTGTCTCCCTGAAGGGGCACACACAGACAGATATGTTCTTGTGGTTGCCTAGCTATATTGTTCCTCTCTTGATTTTCTGCGGTCTTACATTGATTTGTCTGCTTGAATAGAATCTACAAATTTTACTTCCTGCAAGCAGAGAAGTGGAGAACACAGGACACTCGAATAGTTGCTTGTTCTAGTATAGTGAATTGGGAATGAACTTTTCTTCTATAGTGGTTGATGCCACTGTAAACTGAATTCCTTAATGAATTATGTCTAGGTGCTACTGGAATTTGCTCATTAGTCATTCACTCATTCTGATGTTTCAGCTCATCTCTGATGGTGATTATTTTGCTTCTGTCTTTGTATTTCAGGTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAGGTATCTAACCTGGGAATTTGCTTTCCTTGTCTATGACTGTTTCTGTTTGTAAACCTTTATTTGCTTCTGAATAGATGGGGAATGAGTTTCTCACCCTCTTCTTGTGCGACTTCTACCTGCATTTCGCTCAGTTCGCTTCCAACTCCCTCTTAGCTATTCTGTGACCTTACTGTTTTGGAGTGTCAGTAGCAGAAGTAATCCTCAGCTCATGCACCAGTTATCCTAAAGACCCCCCCAGCTTTGTTCAGGACTCATCACTTGTGATGTTTTGTTTTGTATAGCTACTGGACGTGGCATTGAGAGTCATGATGATATTACTGCTACTTATCTGCTCAGTTCCATAGTTTTATAAGCGATTAACTCAATGAATTTATTTGTGTTTTGCCAACAAATAAAGTATTGAAATGAGGATTCTGTTTCAACCTTTTTATTACATTATTAACCTAATGATTTTCTTTTTAATTTATTTATAAAGAACAGTCTACCTACTTAGAGGAGACTTTTTACATTGAAAATGTATGTCTTCAGAATAACAATATATTCAGAAGATCCTTAATAACCTAACCACTTAAAAAAATAAAATTCTACTAATTTTTCAGAGTTCCTTTTTGTTCTCCAGATAGTACTTGAATATAAAACTGTCTCTCATTTCTTCATTTATTTCTGTAGAGACTATGCTTGAATATGCTCTGCCAATGACATGTCATTCTTGTGCTCGTAATCTTTGAAAACCATATGCATCTTTAGGTGTTCATGTGATATCACTACTATTTGGTGGCAATTAAGTGAAGGGCAATGGGAAGTATGCGACCTCTCTTACTGTATAAGCTTTACAAATTGTCAACACCGGCTATCTTTCTCGTTAAAATCATGTACTTTCTACTGAAAGCATCCTTAAGTTGGTAAATCTTCAGTGAACTCTATGAGTGCAGTCGGATATAGAAGTCCAGAAACAATCTTACTCTCTCTTCTTCATTTCCGTAGTTCTTCTATGCTAGACCAGTACTTGGCATTTGCAAATTTTAGTCTTCTGTTAAACATCACATCATCAGGGGGTAATTACGTTGATTGCTAGATGTTGTTTTCCCTAATCACTTGTCTTTTGGAGATTCCACTGTCTGTCTCTTTGCCATTATCTTTAGGTGGCTCTATGCAAGTCTCAGAGTAAGGCTTATGCAGTAGATAAATCATCAATGTGGCATTTCAAATTTTTGAGTCACTAACTTCTCTGAAAATGGGACAGATATTTGTAGCTAATTATTTTGAAAAGGTGAACATCTGTTTGCAAGATAAAGAAACATTAAATTCATTTGTATTAGCCTAACAAATATGATATTGCCTCACAAAAATCCAAGATAACATTCTTCAAAAATTAAGTGAAGGTATTCACTAATTGTGTGAATTTGATTAGAAAATTTGTTAGGTTCATCTCATAAGTGGTAGCAGTAATCACTTCCATCTGTAATTGTTTGTGACATTTGAACAATTACCTCTGATTTGAACCTACGTTTTGCATGTCATGCCATCTATAATGTGCTATTGCTTTACTTATTTTAGGAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTGCAAGGGTGAAC-TTCTT-GGTGGTTGTGATATTGT-T-ATAACTATG</genome_strand>
        <mrna_strand>GTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCTCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTTCCTTACTTTGTCTTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGTCTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGACATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGACGGACAATGAGGTTCGTGAGGGGTTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTACAAGGGTGAACTTTCTTGGGTGGTTGTGATATTGTCTCATAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568232" ref_strand="+" ref_description="SGN-E568232 [12482]">
      <seq>gtcttcttcaaggaaggtaaggctgttgatacattggaaggggcccgatccttctagtttggctaacaaggttgcaaaaattgctgggtcaatcactcctggggatcctgccgctcctgctagcctagaatggctgcaggtccctctgttcttgaagcaattcaggaattgtctaagaaaacggtgcccctcaagtgtcaagttctggtcttgatgatcggctaacaaagcgtcttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagtcgttgacatcttgaaaaagagaaggtcaaatttggaagtttgatattctgacggacaatgaggttcgtgagggcgttgaagaaattttccaattggccaacatattctcaactgtactaccaaggtgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="49218" stop="50268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49528" g_stop="49968" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="451" r_length="439" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E568232" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49528" e_stop="49968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAAAGCTGTTGATACATTGGAAGGGG-CCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGG-TCTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTGCAAGGGTGAACTT</genome_strand>
        <mrna_strand>GAAGGTAAGGCTGTTGATACATTGGAAGGGGCCCGATCCTTCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTA-GAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAATTGTCTA-AGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGTCTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGACATCTTGAA-AAAGAGAAGGTCAAATTTGGAAG-TTTGATATTCTGACGGACAATGAGGTTCGTGAGGGCGTTGAAGAAATTTTCCAATTGGCCAACATATTCTCAACTGTACTACCAAGGTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580352" ref_strand="+" ref_description="SGN-E580352 [5595]">
      <seq>ccctcaagtgtcaagttctggtcttgatgatcgtgtaacaaagcgtcttcagcagctggtttcttctcatccagttctgcttttcatgaaagggaccccagaagaacccaagtgtggttttagtcagaaagtcgttgacatcttgaagaaagagaaggtcaaatttggaagttttgatattctgacggacaatgaggttcgtgaggggttgaagaaattttccaattgggcaacatatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="49404" stop="50245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49704" g_stop="49945" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E580352" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49704" e_stop="49945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGAAGAAATTTTCCAATTGGCCAACATATCCTC</genome_strand>
        <mrna_strand>CCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGTGTAACAAAGCGTCTTCAGCAGCTGGTTTCTTCTCATCCAGTTCTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGACATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGACGGACAATGAGGTTCGTGAGGGGTTGAAGAAATTTTCCAATTGGGCAACATATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551685" ref_strand="+" ref_description="SGN-E551685 [cTSB-1-I15]">
      <seq>agtactgccttgactactcgtcttgcaggtctgataaactctagcccagttatgctgtttatgaaaggaacagttgatgaaccccggtgtggattcagcagaaaggtggtggatattctcaaacaggagaaagtggagtttgagacttttgacattctttctgatgatgaagtccgtcaaggactgaaattttattccaactggtctagttatccacagctgtacataaagggtgaacttattggtggatcagacattgtactggagatgcaaaagagcggtgagtttaggaaggttctgactgagaaggggatacaccagaaagttagtcttgaagaccgtttaaagaatctactgaattcctcacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcagctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaagaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccccaaccagtccaggttgcgcgtatcagacataacatgttagctgtgaggccttacatgttgtgtcgacgtgattttgatggtatttgaacaagaatttcatgttatgagagcagcacttttagagatggttactgttactctagtctctaatttgtctgagtcctgagtttgatatttattcagtgtcatgaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="49822" stop="51255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50122" g_stop="50955" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E551685" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50122" e_stop="50955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTGCCTTGACTACTCGTCTTGCAGGTCTGATAAACTCTAGCCCAGTTATGCTGTTTATGAAAGGAACAGTTGATGAACCCCGGTGTGGATTCAGCAGAAAGGTGGTGGATATTCTCAAACAGGAGAAAGTGGAGTTTGAGACTTTTGACATTCTTTCTGATGATGAAGTCCGTCAAGGACTGAAAGTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGGTGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTA</genome_strand>
        <mrna_strand>AGTACTGCCTTGACTACTCGTCTTGCAGGTCTGATAAACTCTAGCCCAGTTATGCTGTTTATGAAAGGAACAGTTGATGAACCCCGGTGTGGATTCAGCAGAAAGGTGGTGGATATTCTCAAACAGGAGAAAGTGGAGTTTGAGACTTTTGACATTCTTTCTGATGATGAAGTCCGTCAAGGACTGAAATTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGGTGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555380" ref_strand="+" ref_description="SGN-E555380 [cTSC-2-I15]">
      <seq>agtactgccttgactactcgtcttgcaggtctgataaactctagcccagttatgctgtttatgaaaggaacagttgatgaaccccggtgtggattcagcagaaaggtggtggatattctcaaacaggagaaagtggagtttgagacttttgacattctttctgatgatgaagtccgtcaaggactgaaattttattccaactggtctagttatccacagctgtacataaagggtgaacttattggtggatcagacattgtactggagatgcaaaagagcggtgagtttaggaaggttctgactgagaaggggatacaccagaaagttagtcttgaagaccgtttaaagaatctactgaattcctcacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcagctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaagaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccccaaccagtccaggttgcgcgtatcagacataacatgttagctgtgaggccttacatgttgtgtcgacgtgattttgatggtatttgaacaagaatttcatgttatgagagcagcacttttagagatggttactgttactctagtctctaatttgtctgagtcctgagtttgatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="49822" stop="51238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50122" g_stop="50938" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E555380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50122" e_stop="50938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTGCCTTGACTACTCGTCTTGCAGGTCTGATAAACTCTAGCCCAGTTATGCTGTTTATGAAAGGAACAGTTGATGAACCCCGGTGTGGATTCAGCAGAAAGGTGGTGGATATTCTCAAACAGGAGAAAGTGGAGTTTGAGACTTTTGACATTCTTTCTGATGATGAAGTCCGTCAAGGACTGAAAGTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGGTGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTA</genome_strand>
        <mrna_strand>AGTACTGCCTTGACTACTCGTCTTGCAGGTCTGATAAACTCTAGCCCAGTTATGCTGTTTATGAAAGGAACAGTTGATGAACCCCGGTGTGGATTCAGCAGAAAGGTGGTGGATATTCTCAAACAGGAGAAAGTGGAGTTTGAGACTTTTGACATTCTTTCTGATGATGAAGTCCGTCAAGGACTGAAATTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGGTGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572995" ref_strand="+" ref_description="SGN-E572995 [32237]">
      <seq>aaggactgaaagtttattccaactggtctagttatccacagctgtacataaaggatgaacttattggtggatcagacattgtactggagatgcaaaagagcggtgagtttaggaaggttctaactgagaaggggatacaccagaaagtaagtcttgaagaccgtttaaagaatctactggactcctcacctgtaatgctctttatgaagggtacaccagattctccaaggtgtggtttcagctcgaaggtggttaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgatgaagaagtgaggcagggattaaagaccttctccaactggccaacttatccgcagctgtactacaaaggcgaactggtaggaggatgtgatatcatcctggaattacatagcgggggtgaactcaagtcaacattatctgaatagaagaatccccaccagaccagcatgttagctgaggtcttacttgttgtgttttttattgtctttgaacaagaatttcatgttacgagagcagcattttagagatggttactgttactctatatttgtgagagtcttgagtttgatcttcattcacagtgtgttagccagtcatgaattatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50000" stop="51208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50300" g_stop="50902" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E572995" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50300" e_stop="50902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACTGAAAGTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGGTGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTA</genome_strand>
        <mrna_strand>AAGGACTGAAAGTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGATGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTAACTGAGAAGGGGATACACCAGAAAGTAAGTCTTGAAGACCGTTTAAAGAATCTACTGGACTCCTCACCTGTAATGCTCTTTATGAAGGGTACACCAGATTCTCCAAGGTGTGGTTTCAGCTCGAAGGTGGTTAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGATGAAGAAGTGAGGCAGGGATTAAAGACCTTCTCCAACTGGCCAACTTATCCGCAGCTGTACTACAAAGGCGAACTGGTAGGAGGATGTGATATCATCCTGGAATTACATAGCGGGGGTGAACTCAAGTCAACATTATCTGAATAGAAGAATCCCC-ACCAG---A-------C----CAG------CATGTTAGC--TGAGGTCTTACTTGTTGTGT-----T--TTTT-ATTGTCTTTGAACAAGAATTTCATGTTACGAGAGCAGCA-TTTTAGAGATGGTTACTGTTACTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734709" ref_strand="+" ref_description="SGN-E734709 [LB13BE10]">
      <seq>gaaggttctgactgagaaggggatacaccagaaagttagtcttgaagaccgtttaaagaatctactgaattcctcacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcagctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaagaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccccaaccagtccaggttgcgcgtatcagacataacatgttagctgtgaggccttacatgttgtgtcgacgtgattttgatggtatttgaacaagaatttcatgttatgagagcagcacttttagagatggttactgttactctagtctctaatttgtctgagtcctgagtttgatatttattcagtgtcatgaattatgtatgcttctgtagaggaccttatttttcttatcttagtttgcctatggttgattctgctttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50112" stop="51324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50412" g_stop="51020" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="621"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E734709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50412" e_stop="51020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCC</genome_strand>
        <mrna_strand>GAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349193" ref_strand="+" ref_description="SGN-E349193 [cTOS-2-G24]">
      <seq>ttctgactgagaaggggatacaccagaaagttagtcttgaagaccgtttaaagaatctactgaattcctcacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcagctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaagaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccccaaccagtccaggttgcgcgtatcagacataacatgttagctgtgaggccttacatgttgtgtcgacgtgattttgatggtatttgaacaagaatttcatgttatgagagcagcacttttagagatggttactgttactctagtctctaatttgtctgagtcctgagtttgatatttattcagtgtcatgaattatgtatgcttctgtagaggaccttatttttcttatcttagtttgcctatggttgattctgctttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50117" stop="51324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50417" g_stop="51029" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E349193" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50417" e_stop="51029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCCATAACTTCT</genome_strand>
        <mrna_strand>TTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356869" ref_strand="+" ref_description="SGN-E356869 [cTOS-22-A14]">
      <seq>ttctgactgagaaggggatacaccagaaagttagtcttgaagaccgtttaaagaatctactgaattcctcacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcagctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaagaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccccaaccagtccaggttgcgcgtatcagacataacatgttagctgtgaggccttacatgttgtgtcgacgtgattttgatggtatttgaacaagaatttcatgttatgagagcagcacttttagagatggttactgttactctagtctctaatttgtctgagtcctgagtttgatatttattcagtgtcatgaattatgtatgcttctgtagaggaccttatttttcttatcttagtttgcctatggttgattctgctttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50117" stop="51324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50417" g_stop="51028" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E356869" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50417" e_stop="51028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCCATAACTTC</genome_strand>
        <mrna_strand>TTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350077" ref_strand="+" ref_description="SGN-E350077 [cTOS-4-P17]">
      <seq>ttctgactgagaaggggatacaccagaaagttagtcttgaagaccgtttaaagaatctactgaattcctcacctgtaatgctcttcatgaagggtacaccagattctccaagatgtggtttcagctccaaggtggtaaatgccttgaaggaggaaggggttgattttggatcctttgatattctatccgacgaagaagtaaggcagggactgaagaccttctctaactggccaacttatccgcagctgtattacaaaggcgaacttgtaggaggatgtgatatcgtgctggaattacatagcgggggtgaattgaagtcaacattatctgaatagaagaacccccaaccagtccaggttgcgcgtatcagacataacatgttagctgtgaggccttacatgttgtgtcgacgtgattttgatggtatttgaacaagaatttcatgttatgagagcagcacttttagagatggttactgttactctagtctctaatttgtctgagtcctgagtttgatatttattcagtgtcatgaattatgtatgcttctgtagaggaccttatttttcttatcttagtttgcctatggttgattctgctttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="50117" stop="51324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50417" g_stop="51027" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E350077" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50417" e_stop="51027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCCATAACTT</genome_strand>
        <mrna_strand>TTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272280" ref_strand="+" ref_description="SGN-E272280 [cLEM-19-H13]">
      <seq>tatcatactcatgaatcagttgatacatccgaccttcctttattttctgtggattatctccaacttctcccacatttcctttgtagtcttacatctataggtgtttttgaactcttccatgctcaaagcacagtaaagtatgtgtttggctctagcattggtttgcaggacatccatttgttctcttgtataggatgcctcgtcgtcatgttcctttccttcctgatcaccaggaattggtagtggtccgttctgtatgattagccatgattgaaggtcaactgattgcacatacacactcattctagccttccaatgacgataatgtttcccatcgaagtattgtggccttgaatcttcttcttctggttgaagatatccttctgcaatgtgataactagccattggtgttttctcactttctgctatgcaaaaacaaacttgtcagaggcttaagaaaatatgctggaacataagtcgaatgttccaatggcagtcacaattatattatatatatacaaaatatgattttaaattggaaaaattatgtggttaagcaatcttatactacttaatcggtagttatatctatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="53075" stop="51881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52775" g_stop="52181" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E272280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52775" e_stop="52181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATACTCATGAATCAGTTGATACATCCGACCTTCCTTTATTTTCTGTGGATTATCTCCAACTTCTCCCACATTTCCTTTGTAGTCTTACATCTATAGGTGTTTTTGAACTCTTCCATGCTCAAAGCACAGTAAAGTATGTGTTTGGCTCTAGCATTGGTTTGCAGGACATCCATTTGTTCTCTTGTATAGGATGCCTCGTCGTCATGTTCCTTTCCTTCCTGATCACCAGGAATTGGTAGTGGTCCGTTCTGTATGATTAGCCATGATTGAAGGTCAACTGATTGCACATACACACTCATTCTAGCCTTCCAATGACGATAATGTTTCCCATCGAAGTATTGTGGCCTTGAATCTTCTTCTTCTGGTTGAAGATATCCTTCTGCAATGTGATAACTAGCCATTGGTGTTTTCTCACTTTCTGCTATGCAAAAACAAACTTGTCAGAGGCTTAAGAAAATATGCTGGAACATAAGTCGAATGTTCCAATGGCAGTCACAATTATATTATATATATACAAAATATGATTTTAAATTGGAAAAATTATGTGGTTAAGCAATCTTATACTACTTAATCGGTAGTTATATCTATAGC</genome_strand>
        <mrna_strand>TATCATACTCATGAATCAGTTGATACATCCGACCTTCCTTTATTTTCTGTGGATTATCTCCAACTTCTCCCACATTTCCTTTGTAGTCTTACATCTATAGGTGTTTTTGAACTCTTCCATGCTCAAAGCACAGTAAAGTATGTGTTTGGCTCTAGCATTGGTTTGCAGGACATCCATTTGTTCTCTTGTATAGGATGCCTCGTCGTCATGTTCCTTTCCTTCCTGATCACCAGGAATTGGTAGTGGTCCGTTCTGTATGATTAGCCATGATTGAAGGTCAACTGATTGCACATACACACTCATTCTAGCCTTCCAATGACGATAATGTTTCCCATCGAAGTATTGTGGCCTTGAATCTTCTTCTTCTGGTTGAAGATATCCTTCTGCAATGTGATAACTAGCCATTGGTGTTTTCTCACTTTCTGCTATGCAAAAACAAACTTGTCAGAGGCTTAAGAAAATATGCTGGAACATAAGTCGAATGTTCCAATGGCAGTCACAATTATATTATATATATACAAAATATGATTTTAAATTGGAAAAATTATGTGGTTAAGCAATCTTATACTACTTAATCGGTAGTTATATCTATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436661" ref_strand="+" ref_description="SGN-E436661 [STM-63-G20]">
      <seq>atatagctatggccacagataatcggaatatccatcggaaaatcggacggtcaacgacgaggacgaagtgtccggcgccattcttatcgaaaacttacgatcttttggaagagcaagaagaagagaataataataatattaaggttgtttcatggaatggtgaaggaaatggatttgttgtgtggtgtccagatgagttttctgaggttatgttacctaaatacttcaagcacaacaatttctccagtttcattcgacaacttaatacctatggattcaagaaagtagcatcaaaacgttgggaatttcatcatgaaaagttccagaaagggtgcaggcatttgctagcagaaataacaagaaagaaatgtgagccaagtgtatttcctacatacttaaatccttctaaaaagagcacattattattagctagaaataatcaagagaatacaacaaggcaacttctcatggaagagaaccaaaacttgaaaaaggaaaaaatggaattgcaattgcaaattgcacatttcaaaacattggaaatgaagttgttgcaatgcctttctcaatgtgtggaaaatccacataataaaactagaaggttgttttagacaggcgtgagtgttttgtacatcgagctactttttatcttttcttaatcatacatgtataattaaatatatatactctagctacatatcggactatttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="59482" stop="56453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59182" g_stop="58905" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58904" i_stop="57172" i_length="1733">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57171" g_stop="56757" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="677" r_length="405" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E436661" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59182" e_stop="58905"/>
          <exon e_start="57171" e_stop="56757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGCTATGGCCACAGATGATAATCGGAATATCCATCGGAAAATCGGACGGTCGACGACGAGAACCAAGTGTCCGGCGCCGTTCTTATCGAAAACTTACGATCTTTTGGAGGAGCAAGAAGAAGAAAATAGTAATCGTAATATTAAGGTTGTTTCATGGAATGGTGAAGGAAATGGATTTGTTGTGTGGTGTCCAGATGAGTTTTCTGAGGTTATGTTACCTAAATACTTCAAGCACAACAATTTCTCTAGTTTCATTCGTCAACTTAATACCTACGTAAGTCTCGATCTATATCTTCTTTCTGTCTCGATTTGTTTCACTTACTTTTCGTTTTAATTAATAAGTGGAATCATGGTTGTGAAACCATAATATTTCGGCAAATAATAAGGTGAAAGATAATACAAATGTACCTTATGGTTTAAAAAAAAAAAACCTAAAATTAGTCCCTTCAATCATAGGCCCAAAGATATGTTATTTCAAATTTTCAACCAATTGACTCAATGGTATATGACATGTATTTGTTGGTAATTGGTTTGATAATTTTGCTGTGGAGTTAGTCTACATTGGTGGCCTAAAGTAAATTTATTAAGCAATTATATTAGCAAAATTGTAGTCCATTTGATAAACTTCTTGTTGTGTGATCTCCACTAATTTATTTTTGAAAAAAATCACATAATTAATTGCTGTCAAATTGGCCTACCTATATATTTTGCACCGCCCTTTAATTTTAGTTTATCACTAAATATTTATTTATTGCTGAGTTTATATTTTTACATTATAATACACATTTTTTAAAAACTTATGTCCCTGTTAGATACTTCTTTCGTCTCATTTTATATTTTCTACAAATAGTTGATCCATTTTATCTTTCATTTTATAAAAATCAATGCATAAATTATTATATCATTTCTTTTTTACCCTTATGAGTTATTAGCCTTGAAAATACATGTTTGACCAATTTAGAAAAAAACTTAAATAAATGATTCATATTCATTGATTGAAAATTTGAGTTCCAAGAAAATAAAATAAGGATAGTAAGATAAAATTACATCATTTCTTAATACAGGTGCAAAGTAAAAATGTGATATACAAAATCAAAATTGAAAATCACCTCATTTTTTAAAGTATAAACGTGGAATTACATGAAAATCTTTGGTGGTCTTTGTCCAAAAAAGCTTCCAAATATTTATTTTGGAAAGATCGTGAAAAAATATTCTAAATTTTTCATTTCATATTTGTCAAAATTTTGGTCTATAGTGACATACATCTCTTGGTGACTAAAATGGTAGTCAAATTGGTTGAAAGCCAAAACCGATCAACAAAATCATCCTACTCCAAAGTCAATTTTTGATGACATCTTGTCCTGCTATGGTTTCGTGATGAACTTATTTTGACAATAAAATAGAATACACTATTTCATTTACAATCCTTTTGACTTTTCGATAAAGATCTCACGCACTGTCAAGATTTTGAAATTCGTTTATACGATTCACATGATCTTTTTTTGAAAGCGAGTTTTTAAAGCTTACTTTCTGCTATAAATTATAGGGTAACTCAAGATCAGAACTTTATTTATTTAAGTCTTACGCATAATATATTAACGCGCACTTTAAAAGGCAGAATAAAGCGGTGGGTTGATTTTTAAAGTAGAGTGTGGAAGTGAAACTCACCCTTTTATTACTACACCAAAAATGATCAGTAGTGACAATTAATTCATAATGACCGCTAAATATGTATTTTTAGTGGCAATTGTCACTTTTTGTATATGTCCCTAAAGCCTTTAGCGACATTCATTCTAATGACACTTATGCTGGTAAAGACTTAAACACTCTTTATTAATGTCAATATTTAATGTCGCTAAAAGTTATTTTTGTTATAGTGTTTCTTGATGTTAGACTTTTACATCTCGTCTTTTATTTTATATTAGATTTCTACGAACTTGATAGAAAATCAAATAACTTTTATTTGTGTATTTATTTGATTAAATTTATGTATTTAAATTTATATAGGGATTCAAGAAAGTAGCATCAAAACGTTGGGAATTTCATCATGGAAAGTTCCAGAAAGGGTGTAGACATTTGCTAGCAGAAATAACAAGAAAGAAATGTGAGCCAAGTGTATTTCCTACATACTTAAATCCTTCTAAAAAGAGCACATTATTATTAGCTACAAATAATAATGATCAAGAGAATACAATTACAAGGCAACATCTCATGGAAGAGAATCAAAACTTGAAAAAGGAAAGAATGGAATTGCAAATGCAAATTGCACATTTCAAAACATTGGAAATGAAGTTGTTGCAATGCCTTTCTCAATGTGTGGAAAATCCACATAACAAAACTAGAAGGTTGTTTTAGATTGATACGAGTGTTTTGTATATCAAACTGTTTTTTTTTCCCTTCTGAATCATACATGTATAATTAT</genome_strand>
        <mrna_strand>ATATAGCTATGGCCAC--A-GATAATCGGAATATCCATCGGAAAATCGGACGGTCAACGACGAGGACGAAGTGTCCGGCGCCATTCTTATCGAAAACTTACGATCTTTTGGAAGAGCAAGAAGAAGAGAATAATAA---TAATATTAAGGTTGTTTCATGGAATGGTGAAGGAAATGGATTTGTTGTGTGGTGTCCAGATGAGTTTTCTGAGGTTATGTTACCTAAATACTTCAAGCACAACAATTTCTCCAGTTTCATTCGACAACTTAATACCTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCAAGAAAGTAGCATCAAAACGTTGGGAATTTCATCATGAAAAGTTCCAGAAAGGGTGCAGGCATTTGCTAGCAGAAATAACAAGAAAGAAATGTGAGCCAAGTGTATTTCCTACATACTTAAATCCTTCTAAAAAGAGCACATTATTATTAGCT--AGA-AAT-A--ATCAAGAGAATAC-A--ACAAGGCAACTTCTCATGGAAGAGAACCAAAACTTGAAAAAGGAAAAAATGGAATTGCAATTGCAAATTGCACATTTCAAAACATTGGAAATGAAGTTGTTGCAATGCCTTTCTCAATGTGTGGAAAATCCACATAATAAAACTAGAAGGTTGTTTTAGACAGGCGTGAGTGTTTTGTACATCGAGCT-ACTTTTTATCTTTTCTTAATCATACATGTATAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223367" ref_strand="+" ref_description="SGN-E223367 [cLEL-14-K19](-)">
      <seq>cacctgcacctacaccttctacgaatcttgggtataatacacaaactccagtagaagaggaatgttgtaggtggatgaaagctgtcgatagcgaatgtgtttgttctctattggctcatctgcctattttcctttctaggccaatccatcagtatactactttggctcatgcaacttgcagtgtaactttcacgtgtgcttcctccgctaggttccaacaaaatgatcatcagaagtcaccacactctccataactactactaattacctactttatttacaataagtaaagatttttaggaagggatatgggcctttacttaattaaaactcctaaaactttaaattatgactcattgtattgagtaataaattgtaattgtcatcatttgaataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="68892" stop="67897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68592" g_stop="68198" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="419"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E223367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68592" e_stop="68198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTGCACCTACACCTTCTACGAATCTTGGGTATAATACACAAACTCCAGTAGAAGAGGAATGTTGTAGGTGGATGAAAGCTGTCGATAGCGAATGTGTTTGTTCTCTATTGGCTCATCTGCCTATTTTCCTTTCTAGGCCAATCCATCAGTATACTACTTTGGCTCATGCAACTTGCAGTGTAACTTTCACGTGTGCTTCCTCCGCTAGGTTCCAACAAAATGATCATCAGAAGTCACCACACTCTCCATAACTACTACTAATTACCTACTTTATTTACAATAAGTAAAGATTTTTAGGAAGGGATATGGGCCTTTACTTAATTAAAACTCCTAAAACTTTAAATTATGACTCATTGTATTGAGTAATAAATTGTAATTGTCATCATTTGAAT</genome_strand>
        <mrna_strand>CACCTGCACCTACACCTTCTACGAATCTTGGGTATAATACACAAACTCCAGTAGAAGAGGAATGTTGTAGGTGGATGAAAGCTGTCGATAGCGAATGTGTTTGTTCTCTATTGGCTCATCTGCCTATTTTCCTTTCTAGGCCAATCCATCAGTATACTACTTTGGCTCATGCAACTTGCAGTGTAACTTTCACGTGTGCTTCCTCCGCTAGGTTCCAACAAAATGATCATCAGAAGTCACCACACTCTCCATAACTACTACTAATTACCTACTTTATTTACAATAAGTAAAGATTTTTAGGAAGGGATATGGGCCTTTACTTAATTAAAACTCCTAAAACTTTAAATTATGACTCATTGTATTGAGTAATAAATTGTAATTGTCATCATTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223574" ref_strand="+" ref_description="SGN-E223574 [cLEL-14-K19](-)">
      <seq>atcttgggtataatacacaaactccagtagaaaaggaatgttgtaggtggatgaaagctgtcgatagcgaatgtgtttgttctctattggctcatctgcctattttcctttctaggccaatccatcagtatactactttggctcatgcaacttgcagtgtaactttcacgtgtgcttcctccgctaggttccaacaaaatgatcatcagaagtcaccacactctccataactactactaattacctactttatttacaataagtaaagatttttaggaagggatatgggcctttacttaattaaaactcctaaaactttaaattatgactcattgtattgagtaataaattgtaattgtcatcatttgaataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="68868" stop="67897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68568" g_stop="68198" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="395"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E223574" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68568" e_stop="68198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGGGTATAATACACAAACTCCAGTAGAAGAGGAATGTTGTAGGTGGATGAAAGCTGTCGATAGCGAATGTGTTTGTTCTCTATTGGCTCATCTGCCTATTTTCCTTTCTAGGCCAATCCATCAGTATACTACTTTGGCTCATGCAACTTGCAGTGTAACTTTCACGTGTGCTTCCTCCGCTAGGTTCCAACAAAATGATCATCAGAAGTCACCACACTCTCCATAACTACTACTAATTACCTACTTTATTTACAATAAGTAAAGATTTTTAGGAAGGGATATGGGCCTTTACTTAATTAAAACTCCTAAAACTTTAAATTATGACTCATTGTATTGAGTAATAAATTGTAATTGTCATCATTTGAAT</genome_strand>
        <mrna_strand>ATCTTGGGTATAATACACAAACTCCAGTAGAAAAGGAATGTTGTAGGTGGATGAAAGCTGTCGATAGCGAATGTGTTTGTTCTCTATTGGCTCATCTGCCTATTTTCCTTTCTAGGCCAATCCATCAGTATACTACTTTGGCTCATGCAACTTGCAGTGTAACTTTCACGTGTGCTTCCTCCGCTAGGTTCCAACAAAATGATCATCAGAAGTCACCACACTCTCCATAACTACTACTAATTACCTACTTTATTTACAATAAGTAAAGATTTTTAGGAAGGGATATGGGCCTTTACTTAATTAAAACTCCTAAAACTTTAAATTATGACTCATTGTATTGAGTAATAAATTGTAATTGTCATCATTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431388" ref_strand="+" ref_description="SGN-E431388 [STM-55-I22]">
      <seq>cttctctttttcctctgtttaatcacatgggattctccatttgaagcttgaaagtctgaaactttgattgttttttcaacccttttgcttgattgatttggaaagacccttggattgaacaagtgctcagaaacaaatctcatggccttcgagcagtattattcaaacgagtggaaatcgatccctactccagaatcatcagactcagagaagacgtctgcctgcttcgattgcaacatctgcttggactttgcccgtgatccggttgttacactttgtggccatctctattgttggccctgcatttacaagtggtttcacttccagagtgactctctgtcttcggatgaacgccctcggtgtccagtttgcaaggctgaaatctcccaaacagatttagtccctctttacgggcgtggggtaacactgcctgaatctgagcctgaaaacaagctcactctaaaagtgcctcccaggccatctgctttcggtccattatccttgtcaaattcctttaatccttctcagcaaccaccacatcctaatgcctatgatccctatgccagttacctcaacagttcatcgccgccttcattcaatcatggaaacaatacatcagtgggagtctttcatccagttgttggaatgttangagagatggtttacgctagggtattcagaaactcagagagtttatacacatatcctaactcctaccatctagtggcaaatagtagtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="75678" stop="73275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75378" g_stop="75284" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75283" i_stop="74221" i_length="1063">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74220" g_stop="73575" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="741" r_length="646" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E431388" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75378" e_stop="75284"/>
          <exon e_start="74220" e_stop="73575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTATTTCCTCTGTTTAATCACCTGGGATTCTCCATTCGAAGCTTGAAAGTCTAAAACTTTGGTTGTTTTTTCAACCCTTTTGCTTGATTGGTAAGAATTTTAGCTCTTCCTCTTCTTTCTTGAATATTAAAACTGATTTTGCCTTGTTCTGTGGTGATTATTGGTGTGTAAAGGTTGGATCTTTGATGGGGTTTTCTCTCTTGATCTGTATGGTACTATCTTCAAAAAAAATTCTTGTGTTTGATCATTTTGTACTACTATAGATGATCTTTATTGATACTATTTAAGTCTTCACCTTCTACCCGCCATAAACAAATGATTTTTTTTGGATTTTCTTGACCTTATGGTTATGAAATAGAAGAGAATTTCATTAGATATATCTGAAAATGCCATGAATGCTAAATGAACATTTGTTGTTGATCATGTTTGGTAGTTTTTTCAACCATTTGAATTGGGGGTAGATGAGGAAGATGGAGAGGATAGTTTAAGGGGTATATATTTTGATTAAACTAAGATTTGACTATAAGATAGATTCAAGATTGAGACATTTTTGTCAAACTGATGCAATTAGTTTGCCCAACTAATTCTGGAAATTTAGTTCTAAGTAGACCTGATTTGATGCAGTGGAAAGAATAGGCTATTTGATCTTTTTCTGATAATTTTTATGAAAGAAACAAGATAAGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCATATTTGTCTCGATCGAGCTGGTCGCACCAGGCTTGCCTAGTTCGGGTTTCCTCTCCTACGTGGTTTGTGAGCTATTACATAGAAGCGGGGGTTTTACTTGGGCGCACCCAAAGGGTTAGCGGCTGCGGGTTTTTCTTTTCGTCAAAAGAAAAAAAAGTGCATATCATTTTTCTGATCTAACTGATCTCCATCTCCCTTGGTTGCTATGGATTGCTTTGAAGCTTCACTAATCTTATAAAATTTGTTTTTTATTCACATGCTTTGTCTTTTTGTTCTCTTCTGTTGTGTGGTAGGTGGAACTTGGAAGCTACTATCTAGCTTCCTCCCCGCCCTTTTAATTCTTAATGCAGTAGCCGGCCTACTAATGCTCAACAATTTCTTTAATACTTTGATTTAAATTTACTTTTCTTGTTGCTAACTAAGATTGTGATTTCAGATTTGGGAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTGGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGCGATCCGGTTATTACTCTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGCTTCACTTTCAGAGTGATTCTCTGTCTTCGGATGAACGCCCTCAATGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGAAACACTACCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAGGCCACCTGCTTTCAGTCCATCATCCATGTCAAACTCCTTTAACCCTTCTCAGCAACCACCACATCCTAATGCCTATGATCCCCATGCCAGTTACCTCAACAGTTCATCGCCTCCTTCATTCAGTCTCGGAAACAATACATCAGTTGGAGTCTTTCATCCAGTTGTTGGAATGTTCGGAGAGATGGTTTACGAGAGGGTATTTGGTAACTCAGAGAATTTATACACATATCCTAACTCATATCATTTAGTGGCAAATAGTAGTCCA</genome_strand>
        <mrna_strand>CTTCTCTTTTTCCTCTGTTTAATCACATGGGATTCTCCATTTGAAGCTTGAAAGTCTGAAACTTTGATTGTTTTTTCAACCCTTTTGCTTGATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAAAGACCCTTGGATTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTCGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACGTCTGCCTGCTTCGATTGCAACATCTGCTTGGACTTTGCCCGTGATCCGGTTGTTACACTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGTTTCACTTCCAGAGTGACTCTCTGTCTTCGGATGAACGCCCTCGGTGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGTAACACTGCCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAGGCCATCTGCTTTCGGTCCATTATCCTTGTCAAATTCCTTTAATCCTTCTCAGCAACCACCACATCCTAATGCCTATGATCCCTATGCCAGTTACCTCAACAGTTCATCGCCGCCTTCATTCAATCATGGAAACAATACATCAGTGGGAGTCTTTCATCCAGTTGTTGGAATGTTANGAGAGATGGTTTACGCTAGGGTATTCAGAAACTCAGAGAGTTTATACACATATCCTAACTCCTACCATCTAGTGGCAAATAGTAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622719" ref_strand="+" ref_description="SGN-E622719 [73089]">
      <seq>tgtttacctctttaaagaaacctattttcttctctttttcctctgtttaatcacatgggattctccgatttgaagcttgaaagtctgaaactttgattgtttttctcaacccttttcttgattgatttgaaaagacccttgggttgaacaagtgctcagaaacaaatctcatggccttcgagcagtattattcaaacgagtggaaatcgatccctactccagaatcatcagactcagagaagacttctgcctgctttgattgcaacatctgcttggactttgcccgtgatccggttgttacactttgtggccatctctattgttggccctgcatttacaagtggtttcacttccagagtgactctctgtcttcggatgaacgccctcagtgtccagtttgcaaggctgaaatctcccaaacagatttagtccctctttatgggcgtggggtagcactgcctgaatctgagcctgaaaacaagctcactttaaaagtgcctcccaggccatctgctttcggtccattatccttgtcaaattcctttaatccttctcagcaaccaccacatcctaatgcctatgatccctatgccagttacctcaacagttcatcgccgccttcattcaatcatggaaacaatacatcagtgggagtctttcatccagttgttggaatgttaggagagatggtttacgctagggtatttggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="75706" stop="73332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75406" g_stop="75284" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75283" i_stop="74221" i_length="1063">
            <donor d_prob="0.960" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74220" g_stop="73632" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="713" r_length="589" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E622719" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75406" e_stop="75284"/>
          <exon e_start="74220" e_stop="73632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTACCTCTTTAAAGAAACCTATTTTCTTCTCTATTTCCTCTGTTTAATCACCTGGGATTCTCC-ATTCGAAGCTTGAAAGTCTAAAACTTTGGTTGTTTTT-TCAACCCTTTTGCTTGATTGGTAAGAATTTTAGCTCTTCCTCTTCTTTCTTGAATATTAAAACTGATTTTGCCTTGTTCTGTGGTGATTATTGGTGTGTAAAGGTTGGATCTTTGATGGGGTTTTCTCTCTTGATCTGTATGGTACTATCTTCAAAAAAAATTCTTGTGTTTGATCATTTTGTACTACTATAGATGATCTTTATTGATACTATTTAAGTCTTCACCTTCTACCCGCCATAAACAAATGATTTTTTTTGGATTTTCTTGACCTTATGGTTATGAAATAGAAGAGAATTTCATTAGATATATCTGAAAATGCCATGAATGCTAAATGAACATTTGTTGTTGATCATGTTTGGTAGTTTTTTCAACCATTTGAATTGGGGGTAGATGAGGAAGATGGAGAGGATAGTTTAAGGGGTATATATTTTGATTAAACTAAGATTTGACTATAAGATAGATTCAAGATTGAGACATTTTTGTCAAACTGATGCAATTAGTTTGCCCAACTAATTCTGGAAATTTAGTTCTAAGTAGACCTGATTTGATGCAGTGGAAAGAATAGGCTATTTGATCTTTTTCTGATAATTTTTATGAAAGAAACAAGATAAGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCATATTTGTCTCGATCGAGCTGGTCGCACCAGGCTTGCCTAGTTCGGGTTTCCTCTCCTACGTGGTTTGTGAGCTATTACATAGAAGCGGGGGTTTTACTTGGGCGCACCCAAAGGGTTAGCGGCTGCGGGTTTTTCTTTTCGTCAAAAGAAAAAAAAGTGCATATCATTTTTCTGATCTAACTGATCTCCATCTCCCTTGGTTGCTATGGATTGCTTTGAAGCTTCACTAATCTTATAAAATTTGTTTTTTATTCACATGCTTTGTCTTTTTGTTCTCTTCTGTTGTGTGGTAGGTGGAACTTGGAAGCTACTATCTAGCTTCCTCCCCGCCCTTTTAATTCTTAATGCAGTAGCCGGCCTACTAATGCTCAACAATTTCTTTAATACTTTGATTTAAATTTACTTTTCTTGTTGCTAACTAAGATTGTGATTTCAGATTTGGGAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTGGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGCGATCCGGTTATTACTCTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGCTTCACTTTCAGAGTGATTCTCTGTCTTCGGATGAACGCCCTCAATGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGAAACACTACCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAGGCCACCTGCTTTCAGTCCATCATCCATGTCAAACTCCTTTAACCCTTCTCAGCAACCACCACATCCTAATGCCTATGATCCCCATGCCAGTTACCTCAACAGTTCATCGCCTCCTTCATTCAGTCTCGGAAACAATACATCAGTTGGAGTCTTTCATCCAGTTGTTGGAATGTTCGGAGAGATGGTTTACGAGAGGGTATTTGGTAAC</genome_strand>
        <mrna_strand>TGTTTACCTCTTTAAAGAAACCTATTTTCTTCTCTTTTTCCTCTGTTTAATCACATGGGATTCTCCGATTTGAAGCTTGAAAGTCTGAAACTTTGATTGTTTTTCTCAACCCTTTT-CTTGATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTCGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGTGATCCGGTTGTTACACTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGTTTCACTTCCAGAGTGACTCTCTGTCTTCGGATGAACGCCCTCAGTGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTATGGGCGTGGGGTAGCACTGCCTGAATCTGAGCCTGAAAACAAGCTCACTTTAAAAGTGCCTCCCAGGCCATCTGCTTTCGGTCCATTATCCTTGTCAAATTCCTTTAATCCTTCTCAGCAACCACCACATCCTAATGCCTATGATCCCTATGCCAGTTACCTCAACAGTTCATCGCCGCCTTCATTCAATCATGGAAACAATACATCAGTGGGAGTCTTTCATCCAGTTGTTGGAATGTTAGGAGAGATGGTTTACGCTAGGGTATTTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612367" ref_strand="+" ref_description="SGN-E612367 [62129]">
      <seq>ctttaaagaaacctattttcttctctttttcctctgtttaatcacatgggattctccatttgaagcttgaaagtctgaaactttgattgttttttcaacccttttcttgattgatttgaaaagacccttgggttgaacaagtgctcagaaacaaatctcatggccttcgagcagtattattcaaacgagtggaaatcgatccctactccagaatcatcagactcagagaagacttctgcctgctttgattgcaacatctgcttggactttgcccgtgatccggttgttacactttgtggccatctctattgttggccctgcatttacaagtggtttcacttccagagtgactctctgtcttcggatgaacgccctcagtgtccagtttgcaaggctgaaatctcccaaacagatttagtccctctttatgggcgtggggtagcactgcctgaatctgagcctgaaaacaagctcactttaaaagtgcctcccaggccatctgctttcggtccattatccttgtcaaattcctttaatccttctcagcaaccaccaaatcctaatgcctatgatccctatgccagttacctcaacagttcatcgccgccttcattcaatcatgcgaaacaatacatcagtgggagtcttttcatccagttgttggaatgttaggagagatggtttacgctaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="75697" stop="73343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75397" g_stop="75284" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75283" i_stop="74221" i_length="1063">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74220" g_stop="73643" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="693" r_length="580" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E612367" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75397" e_stop="75284"/>
          <exon e_start="74220" e_stop="73643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAAGAAACCTATTTTCTTCTCTATTTCCTCTGTTTAATCACCTGGGATTCTCCATTCGAAGCTTGAAAGTCTAAAACTTTGGTTGTTTTTTCAACCCTTTTGCTTGATTGGTAAGAATTTTAGCTCTTCCTCTTCTTTCTTGAATATTAAAACTGATTTTGCCTTGTTCTGTGGTGATTATTGGTGTGTAAAGGTTGGATCTTTGATGGGGTTTTCTCTCTTGATCTGTATGGTACTATCTTCAAAAAAAATTCTTGTGTTTGATCATTTTGTACTACTATAGATGATCTTTATTGATACTATTTAAGTCTTCACCTTCTACCCGCCATAAACAAATGATTTTTTTTGGATTTTCTTGACCTTATGGTTATGAAATAGAAGAGAATTTCATTAGATATATCTGAAAATGCCATGAATGCTAAATGAACATTTGTTGTTGATCATGTTTGGTAGTTTTTTCAACCATTTGAATTGGGGGTAGATGAGGAAGATGGAGAGGATAGTTTAAGGGGTATATATTTTGATTAAACTAAGATTTGACTATAAGATAGATTCAAGATTGAGACATTTTTGTCAAACTGATGCAATTAGTTTGCCCAACTAATTCTGGAAATTTAGTTCTAAGTAGACCTGATTTGATGCAGTGGAAAGAATAGGCTATTTGATCTTTTTCTGATAATTTTTATGAAAGAAACAAGATAAGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCATATTTGTCTCGATCGAGCTGGTCGCACCAGGCTTGCCTAGTTCGGGTTTCCTCTCCTACGTGGTTTGTGAGCTATTACATAGAAGCGGGGGTTTTACTTGGGCGCACCCAAAGGGTTAGCGGCTGCGGGTTTTTCTTTTCGTCAAAAGAAAAAAAAGTGCATATCATTTTTCTGATCTAACTGATCTCCATCTCCCTTGGTTGCTATGGATTGCTTTGAAGCTTCACTAATCTTATAAAATTTGTTTTTTATTCACATGCTTTGTCTTTTTGTTCTCTTCTGTTGTGTGGTAGGTGGAACTTGGAAGCTACTATCTAGCTTCCTCCCCGCCCTTTTAATTCTTAATGCAGTAGCCGGCCTACTAATGCTCAACAATTTCTTTAATACTTTGATTTAAATTTACTTTTCTTGTTGCTAACTAAGATTGTGATTTCAGATTTGGGAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTGGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGCGATCCGGTTATTACTCTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGCTTCACTTTCAGAGTGATTCTCTGTCTTCGGATGAACGCCCTCAATGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGAAACACTACCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAGGCCACCTGCTTTCAGTCCATCATCCATGTCAAACTCCTTTAACCCTTCTCAGCAACCACCACATCCTAATGCCTATGATCCCCATGCCAGTTACCTCAACAGTTCATCGCCTCCTTCATTCAGTC-TCGGAAACAATACATCAGTTGGAGTC-TTTCATCCAGTTGTTGGAATGTTCGGAGAGATGGTTTACGAGAGGG</genome_strand>
        <mrna_strand>CTTTAAAGAAACCTATTTTCTTCTCTTTTTCCTCTGTTTAATCACATGGGATTCTCCATTTGAAGCTTGAAAGTCTGAAACTTTGATTGTTTTTTCAACCCTTTT-CTTGATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTCGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGTGATCCGGTTGTTACACTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGTTTCACTTCCAGAGTGACTCTCTGTCTTCGGATGAACGCCCTCAGTGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTATGGGCGTGGGGTAGCACTGCCTGAATCTGAGCCTGAAAACAAGCTCACTTTAAAAGTGCCTCCCAGGCCATCTGCTTTCGGTCCATTATCCTTGTCAAATTCCTTTAATCCTTCTCAGCAACCACCAAATCCTAATGCCTATGATCCCTATGCCAGTTACCTCAACAGTTCATCGCCGCCTTCATTCAATCATGCGAAACAATACATCAGTGGGAGTCTTTTCATCCAGTTGTTGGAATGTTAGGAGAGATGGTTTACGCTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464188" ref_strand="+" ref_description="SGN-E464188 [cPRO-17-A18]">
      <seq>cttctctttttcctctgtttaatcacatgggattctccatttgaagcttgaaagtctgaaactttgattgttttttcaacccttttgcttgattgatttggaaagacccttggattgaacaagtgctcagaaacaaatctcatggccttcgagcagtattattcaaacgagtggaaatcgatccctactccagaatcatcagactcagagaagacgtctgcctgcttcgattgcaacatctgcttggactttgcccgtgatccggttgttacactttgtggccatctctattgttggccctgcatttacaagtggtttcacttccagagtgactctctgtcttcggatgaacgccctcggtgtccagtttgcaaggctgaaatctcccaaacagatttagtccctctttacgggcgtggggtaacactgcctgaatctgagcctgaaaacaagctcactctaaaagtgcctcccaaggcatctgctttcggtccattatccttgtcaaaatcctttaatccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="75678" stop="73490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75378" g_stop="75284" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75283" i_stop="74221" i_length="1063">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74220" g_stop="73790" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="526" r_length="431" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E464188" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75378" e_stop="75284"/>
          <exon e_start="74220" e_stop="73790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTATTTCCTCTGTTTAATCACCTGGGATTCTCCATTCGAAGCTTGAAAGTCTAAAACTTTGGTTGTTTTTTCAACCCTTTTGCTTGATTGGTAAGAATTTTAGCTCTTCCTCTTCTTTCTTGAATATTAAAACTGATTTTGCCTTGTTCTGTGGTGATTATTGGTGTGTAAAGGTTGGATCTTTGATGGGGTTTTCTCTCTTGATCTGTATGGTACTATCTTCAAAAAAAATTCTTGTGTTTGATCATTTTGTACTACTATAGATGATCTTTATTGATACTATTTAAGTCTTCACCTTCTACCCGCCATAAACAAATGATTTTTTTTGGATTTTCTTGACCTTATGGTTATGAAATAGAAGAGAATTTCATTAGATATATCTGAAAATGCCATGAATGCTAAATGAACATTTGTTGTTGATCATGTTTGGTAGTTTTTTCAACCATTTGAATTGGGGGTAGATGAGGAAGATGGAGAGGATAGTTTAAGGGGTATATATTTTGATTAAACTAAGATTTGACTATAAGATAGATTCAAGATTGAGACATTTTTGTCAAACTGATGCAATTAGTTTGCCCAACTAATTCTGGAAATTTAGTTCTAAGTAGACCTGATTTGATGCAGTGGAAAGAATAGGCTATTTGATCTTTTTCTGATAATTTTTATGAAAGAAACAAGATAAGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCATATTTGTCTCGATCGAGCTGGTCGCACCAGGCTTGCCTAGTTCGGGTTTCCTCTCCTACGTGGTTTGTGAGCTATTACATAGAAGCGGGGGTTTTACTTGGGCGCACCCAAAGGGTTAGCGGCTGCGGGTTTTTCTTTTCGTCAAAAGAAAAAAAAGTGCATATCATTTTTCTGATCTAACTGATCTCCATCTCCCTTGGTTGCTATGGATTGCTTTGAAGCTTCACTAATCTTATAAAATTTGTTTTTTATTCACATGCTTTGTCTTTTTGTTCTCTTCTGTTGTGTGGTAGGTGGAACTTGGAAGCTACTATCTAGCTTCCTCCCCGCCCTTTTAATTCTTAATGCAGTAGCCGGCCTACTAATGCTCAACAATTTCTTTAATACTTTGATTTAAATTTACTTTTCTTGTTGCTAACTAAGATTGTGATTTCAGATTTGGGAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTGGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGCGATCCGGTTATTACTCTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGCTTCACTTTCAGAGTGATTCTCTGTCTTCGGATGAACGCCCTCAATGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGAAACACTACCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAGGCCACCTGCTTTCAGTCCATCATCCATGTCAAACTCCTTTAACCCTTCTC</genome_strand>
        <mrna_strand>CTTCTCTTTTTCCTCTGTTTAATCACATGGGATTCTCCATTTGAAGCTTGAAAGTCTGAAACTTTGATTGTTTTTTCAACCCTTTTGCTTGATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAAAGACCCTTGGATTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTCGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACGTCTGCCTGCTTCGATTGCAACATCTGCTTGGACTTTGCCCGTGATCCGGTTGTTACACTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGTTTCACTTCCAGAGTGACTCTCTGTCTTCGGATGAACGCCCTCGGTGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGTAACACTGCCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAAGGCATCTGCTTTCGGTCCATTATCCTTGTCAAAATCCTTTAATCCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400104" ref_strand="+" ref_description="SGN-E400104 [cSTC-4-H16]">
      <seq>catttgaagcttgaaagtctgaaactttgattgttttttcaacccttttcttgattgatttgaaaagacccttgggttgaacaagtgctcagaaacaaatctcatggccttcgagcagtattattcaaacgagtggaaatcgatccctactccagaatcatcagactcagagaagacttctgcctgctttgattgcaacatctgcttggactttgcccgtgatccggttgttacactttgtggccatctctattgttggccctgcatttacaagtggtttcacttccagagtgactctctgtcttcggatgaacgccctcagtgtccagtttgcaaggctgaaatctcccaaacagatttagtccctctttatgggcgtggggtagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="75641" stop="73588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75341" g_stop="75284" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75283" i_stop="74221" i_length="1063">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74220" g_stop="73888" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="390" r_length="333" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E400104" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75341" e_stop="75284"/>
          <exon e_start="74220" e_stop="73888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCGAAGCTTGAAAGTCTAAAACTTTGGTTGTTTTTTCAACCCTTTTGCTTGATTGGTAAGAATTTTAGCTCTTCCTCTTCTTTCTTGAATATTAAAACTGATTTTGCCTTGTTCTGTGGTGATTATTGGTGTGTAAAGGTTGGATCTTTGATGGGGTTTTCTCTCTTGATCTGTATGGTACTATCTTCAAAAAAAATTCTTGTGTTTGATCATTTTGTACTACTATAGATGATCTTTATTGATACTATTTAAGTCTTCACCTTCTACCCGCCATAAACAAATGATTTTTTTTGGATTTTCTTGACCTTATGGTTATGAAATAGAAGAGAATTTCATTAGATATATCTGAAAATGCCATGAATGCTAAATGAACATTTGTTGTTGATCATGTTTGGTAGTTTTTTCAACCATTTGAATTGGGGGTAGATGAGGAAGATGGAGAGGATAGTTTAAGGGGTATATATTTTGATTAAACTAAGATTTGACTATAAGATAGATTCAAGATTGAGACATTTTTGTCAAACTGATGCAATTAGTTTGCCCAACTAATTCTGGAAATTTAGTTCTAAGTAGACCTGATTTGATGCAGTGGAAAGAATAGGCTATTTGATCTTTTTCTGATAATTTTTATGAAAGAAACAAGATAAGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCATATTTGTCTCGATCGAGCTGGTCGCACCAGGCTTGCCTAGTTCGGGTTTCCTCTCCTACGTGGTTTGTGAGCTATTACATAGAAGCGGGGGTTTTACTTGGGCGCACCCAAAGGGTTAGCGGCTGCGGGTTTTTCTTTTCGTCAAAAGAAAAAAAAGTGCATATCATTTTTCTGATCTAACTGATCTCCATCTCCCTTGGTTGCTATGGATTGCTTTGAAGCTTCACTAATCTTATAAAATTTGTTTTTTATTCACATGCTTTGTCTTTTTGTTCTCTTCTGTTGTGTGGTAGGTGGAACTTGGAAGCTACTATCTAGCTTCCTCCCCGCCCTTTTAATTCTTAATGCAGTAGCCGGCCTACTAATGCTCAACAATTTCTTTAATACTTTGATTTAAATTTACTTTTCTTGTTGCTAACTAAGATTGTGATTTCAGATTTGGGAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTGGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGCGATCCGGTTATTACTCTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGCTTCACTTTCAGAGTGATTCTCTGTCTTCGGATGAACGCCCTCAATGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGAAACACT</genome_strand>
        <mrna_strand>CATTTGAAGCTTGAAAGTCTGAAACTTTGATTGTTTTTTCAACCCTTTT-CTTGATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTCGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGTGATCCGGTTGTTACACTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGTTTCACTTCCAGAGTGACTCTCTGTCTTCGGATGAACGCCCTCAGTGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTATGGGCGTGGGGTAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704188" ref_strand="+" ref_description="SGN-E704188 [FA23CD04]">
      <seq>atttctagtaaatttgagcggatgtccccttataccctaataattttggaattttaatttgaaattctgtttacaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgttgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgaaggggaagtgtgatcttagttcagaatgacaaattgagtggcaccgtaggaccagtatacagtttaacctactctggagtaaatagcctgcttgttctcatttttcgctagcacaatcgatgtctgagtcaccttgtagctgcgtttactcttgcacaatagatcttcgatgctgaaatcagtttcttaagtgttctattggtgcattgaacgccacctgtgtgtagtttggcagttctaaagatggtggtgtcaggtatttataatttcatcaatctacttgtttgtagatctgcacaaactgatggaatgagttgtaagttaactctgagtagtcacccaattagattgattttgatctgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77618" stop="81623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77918" g_stop="78034" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="251" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="289" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="349" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81323" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="902" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E704188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77918" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTAGTAAATTTGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTAAAGATGGTGGTGTCAGGTATTTATAATTTCATCAATCTACTTGTTTGTAGATCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGC</genome_strand>
        <mrna_strand>ATTTCTAGTAAATTTGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTAAAGATGGTGGTGTCAGGTATTTATAATTTCATCAATCTACTTGTTTGTAGATCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327200" ref_strand="+" ref_description="SGN-E327200 [cTOC-19-A21]">
      <seq>aatttgagcggatgtccccttataccctaataattttggaattttaatttgaaattctgtttacaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgttgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgaaggggaagtgtgatcttagttcagaatgacaaattgagtggcaccgtaggaccagtatacagtttaacctactctggagtaaatagcctgcttgttctcatttttcgctagcacaatcgatgtctgagtcaccttgtagctgcgtttactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77628" stop="81410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77928" g_stop="78034" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="241" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="279" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="339" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="414" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81110" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="679" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E327200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77928" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTG</genome_strand>
        <mrna_strand>AATTTGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216195" ref_strand="-" ref_description="SGN-E216195 [cLEL-13-D15](-)">
      <seq>tgagcggatgtcccctttttccctaataattttggaattttaatttgaaattctgtttacaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77632" stop="80314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77932" g_stop="78034" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="237" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="275" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="335" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="410" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E216195" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77932" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG</genome_strand>
        <mrna_strand>TGAGCGGATGTCCCCTTTTTCCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218664" ref_strand="-" ref_description="SGN-E218664 [cLEL-18-O4](-)">
      <seq>tgagcggatgtccccttattccctaataattttggaattttaatttgaaattctgtttacaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacttcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77632" stop="80287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77932" g_stop="78034" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="237" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="275" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="335" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="79987" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="386" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E218664" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218664" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77932" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="79987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAG</genome_strand>
        <mrna_strand>TGAGCGGATGTCCCCTTATTCCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACTTCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611251" ref_strand="+" ref_description="SGN-E611251 [61000]">
      <seq>ctaataccctaataattttggggatttcaatttgaaattctgttttcaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcacttgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgagggggaagtgtgatcttaattcagaatgacaaattgagtggcaccataggaccagtatacaatttatcaacactggagtaaatagcctgcttgttctcatttttctatagcacaatagatgtccgagtcaccttgtagctgcgttttctatagcacaatagatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77646" stop="81423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77946" g_stop="78034" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="224" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="262" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="322" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="397" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81123" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="674" r_length="277" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E611251" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77946" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACCCTAATAATTTT-GGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTT</genome_strand>
        <mrna_strand>CTAATACCCTAATAATTTTGGGGATTTCAATTTGAAATTCTGTTTTCAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTTGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAATTCAGAATGACAAATTGAGTGGCACCATAGGACCAGTATACAATTT-ATCAACACTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCTATAGCACAATAGATGTCCGAGTCACCTTGTAGCTGCGTTTTCTATAGCACAATAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225334" ref_strand="-" ref_description="SGN-E225334 [cLEL-17-B8](-)">
      <seq>ataattttggaattttattttgaaattctgtttacaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgttgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77657" stop="81243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77957" g_stop="78034" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="212" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="250" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="310" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="80943" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="483" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E225334" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77957" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="80943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGC</genome_strand>
        <mrna_strand>ATAATTTTGGAATTTTATTTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419736" ref_strand="+" ref_description="SGN-E419736 [STM-30-I23]">
      <seq>taattttggggatttcaatttgaaattctgttttcaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacattagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagggtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcactcgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggatttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgagggggaagtgtgatcttagttcagaatgacaaattgagtggcaccataggaccagtatacaatttaccaacactggagtaaatagcctgcttgttctcatttttctctagcacaatagatgtccgagtcaccttgtagctgcgttttctctagcacaatagatcctcaatgctgaaatcagtttcttaagtgctcttttggtgcattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77658" stop="81467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77958" g_stop="78034" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="212" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="250" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="310" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="706" r_length="321" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E419736" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77958" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTT-GGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAA</genome_strand>
        <mrna_strand>TAATTTTGGGGATTTCAATTTGAAATTCTGTTTTCAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACATTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGGGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTCGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCATAGGACCAGTATACAATTT-ACCAACACTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCTCTAGCACAATAGATGTCCGAGTCACCTTGTAGCTGCGTTTTCTCTAGCACAATAGATCCTCAATGCTGAAATCAGTTTCTTAAGTGCTCTTTTGGTGCATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444685" ref_strand="+" ref_description="SGN-E444685 [cSTA-43-H4]">
      <seq>taattttggggatttcaatttgaaattctgttttcaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacattagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagggtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcactcgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggatttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77658" stop="81212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77958" g_stop="78034" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="212" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="250" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="310" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="80912" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="452" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E444685" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77958" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="80912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTT-GGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGA</genome_strand>
        <mrna_strand>TAATTTTGGGGATTTCAATTTGAAATTCTGTTTTCAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACATTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGGGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTCGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418000" ref_strand="+" ref_description="SGN-E418000 [STM-26-N19]">
      <seq>ttgaaattctgttttcaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacattagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagggtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcactcgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgagggggaagtgtgatcttagttcagaatgacaaattgagtggcaccataggaccagtatacaatttaccaacactggagtaaatagcctgcttgttctcatttttctctagcacaatagatgtccgagtcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77676" stop="81391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77976" g_stop="78034" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="231" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="291" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="366" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81091" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="611" r_length="245" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E418000" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77976" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTT</genome_strand>
        <mrna_strand>TTGAAATTCTGTTTTCAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACATTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGGGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTCGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCATAGGACCAGTATACAATTT-ACCAACACTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCTCTAGCACAATAGATGTCCGAGTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440770" ref_strand="+" ref_description="SGN-E440770 [cSTA-27-A13]">
      <seq>ttgaaattctgttttcaattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacattagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagggtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcactcgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgagggggaagtgtgatcttagttcagaatgacaaattgagtggcaccataagaccagtatacaatttaccaacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77676" stop="81332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77976" g_stop="78034" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="231" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="291" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="366" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81032" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="552" r_length="186" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E440770" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77976" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTG</genome_strand>
        <mrna_strand>TTGAAATTCTGTTTTCAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACATTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGGGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTCGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCATAAGACCAGTATACAATTT-ACCAACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570199" ref_strand="+" ref_description="SGN-E570199 [14746]">
      <seq>caattgtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttagaataaatagaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaacagtgtcacttgtggaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgctgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgagggggaagtgtgatcttaattcagaatgacaaattgagtggcaccataggaccagtatacaatttatcaacactggagtaaatagcctgcttgttctcatttttctatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="77691" stop="81369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77991" g_stop="78034" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78673" g_stop="78806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="178" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="216" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="276" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80846" g_stop="81069" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="574" r_length="223" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E570199" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77991" e_stop="78034"/>
          <exon e_start="78673" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGGCTGCAGAAATTAATTAATTTATGTTTTATGTGCTCTTGCATTCTCTTCCTTTTCTTCAATTCATTCATACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTTTTAATTATTATTTTGTTGTTGATGAATTAGCCCAATTCGCGTCTGTCCCACTTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATTATATGGGATGTGTCTATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGTATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGCGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTGTTTTTTTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATAATATATGATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCA</genome_strand>
        <mrna_strand>CAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAGAATAAATAGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACAGTGTCACTTGTGGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGCTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAATTCAGAATGACAAATTGAGTGGCACCATAGGACCAGTATACAATTT-ATCAACACTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCTATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273688" ref_strand="+" ref_description="SGN-E273688 [cLEN-6-L6]">
      <seq>tcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="78361" stop="79232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78658" g_stop="78806" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="187" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78933" i_stop="79034" i_length="102">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.709" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79035" g_stop="79039" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="192" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E273688" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78658" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79035" e_stop="79039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAAT</genome_strand>
        <mrna_strand>TCAACACTTTTGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT......................................................................................................CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225231" ref_strand="+" ref_description="SGN-E225231 [cLEL-17-B8](-)">
      <seq>tcatgtgttgcaaatctttctgaaacatgccacgtttcctcttaagtgaactttctgaaggttgtgatgctcctactctagcttttgaggatggccctgcagaagagttgttcattttcaatttatttgaacgtccgcctctctacctgcaaaagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="79106" stop="78361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78821" g_stop="78660" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E225231" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78821" e_stop="78660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGTTACTAACAATCTTTCTGAAACATGCCACGTTTCCTCTTAAGTGAACTTTCTGAAGGTTGTGATGCTCCTACTCTAGCTTTTGAGGATGGCCCTGCAGAAGAGTTGTTCATTTTCAATTTATTTTAACGTCCACCTCTCAACCTGCCAAAGTGTC</genome_strand>
        <mrna_strand>TCATGTGTTGC--A-AATCTTTCTGAAACATGCCACGTTTCCTCTTAAGTGAACTTTCTGAAGGTTGTGATGCTCCTACTCTAGCTTTTGAGGATGGCCCTGCAGAAGAGTTGTTCATTTTCAATTTATTTGAACGTCCGCCTCTCTACCTGCAAAAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286507" ref_strand="+" ref_description="SGN-E286507 [cLES-12-B21]">
      <seq>agaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacatcgtggtggattatgtcactgatatggtgcacaaagctcaggatattgcaaccaaaagggggaagcttttgaccgaggactttctgttcttaattagaaaggacttgccgaaacttaaccggtgtacagaactgttgtccatgaatgaggagctgaaacaagctcggaaggctttcgaggtcgatgaagagaaattggcttcacatcagtgaaggggaagtgtgatcttagttcagaatgacaaattgagtggcaccgtaggaccagtatacagtttaacctactctggagtaaatagcctgcttgttctcatttttcgctagcacaatcgatgtctgagtcaccttgtagctgcgtttactcttgcacaatagatcttcgatgctgaaatcagtttcttaagtgttctattggtgcattgaacgccacctgtgtgtagttgggcagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="78463" stop="81495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78763" g_stop="78806" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78895" g_stop="78932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="82" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79714" g_stop="79773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="142" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79937" g_stop="80011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="217" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80846" g_stop="81195" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="567" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E286507" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78763" e_stop="78806"/>
          <exon e_start="78895" e_stop="78932"/>
          <exon e_start="79714" e_stop="79773"/>
          <exon e_start="79937" e_stop="80011"/>
          <exon e_start="80846" e_stop="81195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTAACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTTTTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGCATGTCCATGGTGTTTATATGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCAAGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTGGTAGTGGGAAAAGTTGCAGTTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTACTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTATTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTGAAGGAACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCGGTGTTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCGTAAAACAGAGATAATTTTGCTGGAAGATTTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTGTTTCTAATTTAGTCAACTAATACTGGACTTGGAGATGGTTGATTACCTTATAGGTTACATAAAAGATAATGGTCGATTACCTGTAAATATCAAAAGAATTGTCTGGAAGTTATTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATGGTGAGTTGAACTTACTACTATACAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATCTTCCAGATAAAACTTTGCATTCTACACAATTTATTTTCTTCAGTATTTGATTTAGAAGAAACATGCATATGGTCCTATCTTTTAAGCTCTTCAACTTGGGTAGGTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAGGTCAGTCTTTTTGTGAATTCAACATGCATATATATAATATATATGCATATCTGAATCTGCAGCATTATGGCGAATATTTAGTTGAAAAATGTCCGTCTCATTTTCGCTCAATGAGTGGTCTTGAGAGTTTTCTATATTATTTCATTTAAGAACATTAAGGGAACTATTAGACCAGCCTATTAGTGGAACAAAGTCATATACAAGTGTCCGGATAGCCAAGTGTAGTTGGACAGAAGCTGAGATTTGTAGTTTTGCTCATCTCAAGCTTAATTACTACTTTAAGGTTTTATTTGTTGCTATTATTTTGGCTTACCTCATGCGTGTTAGTACTGCTATCACACTGAATAATTGGTTTCATTATGATAGATCGTAGTTTAGTTCATGTATCACCATTATAGAATTGTATCTGAAAATAGTTTCAATGGTAATTTCATGTTTGTTTGTGCCTGATAAACCTGAAACTCTTCTGGGACTAGTTTGATGTCTCCATGCCAACGAGAAATGCCAATAATAGTTAGCTTCTTACTATGTTGATCATTAAAACAACAAATTACTCCATCTTTTGGTTGGGTAGAATTACGCTGGGAGATTGTTGCGTCGCCTTCACCTTCCATCTATTTAGTGCCACGTGCCTCTTCTATTGTGCTGCTTACTGGTTTCTCTTGCTGTGATTTGAATATATTTCAACACGTCTTTAGTTGTCAAAAAGAGTATGGATGGTTGTTCTGAAAAATCAGTCCTGCTTTGCTACCTCTACAAACTGGATTATGGTGTTACTGCAAATTTTGCTTTATGAGCTTCTAAATTTTGGATGGATACTGTTCTATTGTGCAGGACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCT</genome_strand>
        <mrna_strand>AGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG...................................................................................................................................................................GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTGGGCAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419737" ref_strand="-" ref_description="SGN-E419737 [STM-30-I23]">
      <seq>atgaagagaaattggcttcacatcagtgagggggaagtgtgatcttagttcagaatgacaaattgagtggcaccataggaccagtatacaatttaccaacactggagtaaatagcctgcttgttctcatttttctctagcacaatagatgtccgagtcaccttgtagctgcgttttctctagcacaatagatcctcaatgctgaaatcagtttcttaagtgctcttttggtgcattgaacgccacctgtgtgtagtttgacagttctaaagatctgcacaaactgatggaatgagtagtaaggtaactctgtgaagtcacccgattagattgattttgatctgtttgcaatgcaaaagatggaagatcttgtacggcttttacctgttaagattctggtaaagctttcccaaaatgcttcttttgtataaggtatttccattcgaaataggaaaaaagatggaatatctcgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="80628" stop="100291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80928" g_stop="81196" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81197" i_stop="81246" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.787" a_score="0.79"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81247" g_stop="81457" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="477" r_length="209" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E419737" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419737" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80928" e_stop="81196"/>
          <exon e_start="81247" e_stop="81457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTAAAGATGGTGGTGTCAGGTATTTATAATTTCATCAATCTACTTGTTTGTAGA---TCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGCTATGCAAAAGATGGAAGATCCTCTACGGCTTTTACCTTGTTAAGATTCTGGTAAAGCTTTCACAAAATGCTTCATTTTGTGCAAGTTATAAACATTCTAAATTGAAAAAAAAAAGATGGAAAATCTCGTAATCA</genome_strand>
        <mrna_strand>ATGAAGAGAAATTGGCTTCACATCAGTGAGGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCATAGGACCAGTATACAATTT-ACCAACACTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCTCTAGCACAATAGATGTCCGAGTCACCTTGTAGCTGCGTTTTCTCTAGCACAATAGATCCTCAATGCTGAAATCAGTTTCTTAAGTGCTCTTTTGGTGCATTGAACGCCACCTGTGTGTAGTTTGACAGTTCTA..................................................AAGATCTGCACAAACTGATGGAATGAGTAGTAAGGTAACTCTGTGAAGTCACCCGATTAGATTGATTTTGATCTGTTTGCAATGCAAAAGATGGAAGATCTTGTACGGCTTTTACC-TGTTAAGATTCTGGTAAAGCTTTCCCAAAATGCTTC-TTTTGTATAAGGTATTTCCATTCGAAA-T--AGGAAAAAAGATGGAATATCTCGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723905" ref_strand="+" ref_description="SGN-E723905 [FC22BF03]">
      <seq>aatcggccgaattggtggcagtacccacagaccagatgtgggactttcaatcatcaggagatagaaactgtcattttcagctgcagatacatcttcacgactttcaatcatcaggtgggaagtcctcatctgaggcattatccagaaatgaaccaagagtttttctcagaaaactgaatgctttatcatcctgtcaagcaaaaaaggaggacggttaacttggcggtatgagaatgtatgcagtgtgtgacagagataaggtgcatcaaagaagttaacctgcttctttttcttcagcgactcctttagttcagaaattcgttttctagagtcttgctcaagatcagatatcatgctcttctctttcttccctgaattaatgtcataaaaatctgtcacaggcatccttatcattcaataaatatataatacagagttcctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="85381" stop="76155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85078" g_stop="84653" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="441" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84652" i_stop="84501" i_length="152">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84500" g_stop="84491" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="451" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84490" i_stop="84393" i_length="98">
            <donor d_prob="0.764" d_score="0.00"/>
            <acceptor a_prob="0.864" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84392" g_stop="84358" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="486" r_length="35" r_score="0.457"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E723905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85078" e_stop="84653"/>
          <exon e_start="84500" e_stop="84491"/>
          <exon e_start="84392" e_stop="84358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGTACCCACAGACCAGATGTGGGACTTTCAATCATCAGGAGATAGAAACTGTCATTTTCAGCTGCAGATACATCTTCACGACTTTCAATCATCAGGTGGGAAGTCCTCATCTGAGGCATTATCCAGAAATGAACCAAGAGTTTTTCTCAGAAAACTGAATGCTTTATCATCCTGTCAAGCAAAAAAGGAGGACGGTTAACTTGGCGGTATGAGAATGTATGCAGTGTGTGACAGAGATAAGGTGCATCAAAGAAGTTAACCTGCTTCTTTTTCTTCAGCGACTCCTTTAGTTCAGAAATTCGTTTTCTAGAGTCTTGCTCAAGATCAGATATCATGCTCTTCTCTTTCTTCCCTGAATTAATGTCATAAAAATCTGTCACAGGCATCCTTATCATTCAATAAATATATAATACAGAGTTCCTGTAACTCACTTAGTTGCTCATATTGCATGAATAGTCTTTCCTTTTCCTCCTCATATTTGGATATAGTATCTGTGAAGATACAATCACGATGGTTAGCGTTAAAATGTTTTCTTCAAGCAGGGTTTGTGAGGACTCTTCAAAACATATGGCAGGTATAAACGCGTAAATCTAGTTGAAATTCTGTAACAGTGTTCAGTTAGATTGCAAATTTTTGTAAAATGATAAACATGAAATGAATATGAGGTGGGTGGTTAAACTAGAAACACAATGTTCCAAAAGTTGTACGGACTACAAA</genome_strand>
        <mrna_strand>TGGCAGTACCCACAGACCAGATGTGGGACTTTCAATCATCAGGAGATAGAAACTGTCATTTTCAGCTGCAGATACATCTTCACGACTTTCAATCATCAGGTGGGAAGTCCTCATCTGAGGCATTATCCAGAAATGAACCAAGAGTTTTTCTCAGAAAACTGAATGCTTTATCATCCTGTCAAGCAAAAAAGGAGGACGGTTAACTTGGCGGTATGAGAATGTATGCAGTGTGTGACAGAGATAAGGTGCATCAAAGAAGTTAACCTGCTTCTTTTTCTTCAGCGACTCCTTTAGTTCAGAAATTCGTTTTCTAGAGTCTTGCTCAAGATCAGATATCATGCTCTTCTCTTTCTTCCCTGAATTAATGTCATAAAAATCTGTCACAGGCATCCTTATCATTCAATAAATATATAATACAGAGTTCCT........................................................................................................................................................GTAAAAAAAA..................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307215" ref_strand="+" ref_description="SGN-E307215 [cLEY-15-P23]">
      <seq>taataattttggaatttcaatttgaaattctgtttacaatggtgctctcgtcatctccagtggaatcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccacttccagaaactgtgtcacttgttgaagacatcgtggtggatgatgtcactgatatgactatctctgcagaagaagatacaatggagaaaatactagctatgatgacaaacctttgtcaaaaggtggagaagatagaaaacgaagtacaagtattaatagaaacatttaaaaaccagcagcatgacggagctagaaggtgacgttgggaaacaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="88652" stop="97386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88952" g_stop="89031" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89032" i_stop="89665" i_length="634">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89666" g_stop="89799" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="214" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89800" i_stop="89887" i_length="88">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89888" g_stop="89925" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="252" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89926" i_stop="90713" i_length="788">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90714" g_stop="90773" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="312" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90774" i_stop="96926" i_length="6153">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96927" g_stop="97086" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="472" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E307215" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88952" e_stop="89031"/>
          <exon e_start="89666" e_stop="89799"/>
          <exon e_start="89888" e_stop="89925"/>
          <exon e_start="90714" e_stop="90773"/>
          <exon e_start="96927" e_stop="97086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAATTTTGGAATTTCAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGACTGCAGAAATTATAATTAATGTTTTATGTGCTCTTGCATTTTCTTCCTTTTCTTCAATACATTGGCACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTATTATTATTATTTTTGTTGTTGATCGATATGCCCAATTCGCGTCTGTCCCACCTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATATATGGGTTGTGTATATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGCATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGTGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTATTTTCTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATTATATATAATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTGACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTATTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGTATGTCCATGGTGTTTATACGCGTTGATTGTTGTGTGTATGGCAATACAGTGAATTATGTCATGCTGCTGTCACCTAGCTTTTCTTTTCTCTGTACAAACATTTATAGTGGGAAAAGTTGCAGCTTGTATAGAACAGATTGAATATGGCCTTCGCTTGTTGCTTAATGTTTAACAAAAATCACTCACCGGCTATGGGAAATACTTTTAGTTTCTTTGATGATTGTTCTAAGCTTGTGTCTAGGATCTAGCAATAATGTCTAAAGGGACTTTTGGGAGGACCAAGGACCTGTGCTGATTCTAAGGAAAGAACAGAAACTCAGTATTGGAGTTTTGTAATGATGTTGTCTAGTTGTCTTTTAAAAGGAATAATCTTTGTTGCTGGAGTACAGTCCTTTTTCTTGTTTTACCACATCTTGCTTTCCCTGTTGCACAAGGGAATAGAGCGCGGTCATAATGCATTAGTGACTCCATCATAAAACAGAGATAATTTTGCTGGAAGATCTTCTTATTGATATGTTCCCTTTGGCAGCTGTATGTTTATTTTTTCTAATTTAGTAAACTAATACTGGACTTGGAGATGGTTGATTGCCTTATAGGTTATATAAAAGATGATGGTTGATTACTTGTAAATATCAAAAGAATTGTCTGGAAGTTGTACTGATTTTGATTTTCTATGAGTTGCTGGTATTATTTTGTCCCTTGATCTTTACTAAACTAATAGTGTTGCACTATCAGCCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATGATGTCACTGATATGGTGAGTTGAACTTACTACTATCCAGTGCTATTCTTTCGAAGAGGTTTCAGAATATACATGTTCCAGATAAAGCTTTGCATTCTACGCAATTTATTTTCTTCAGTATTTGATTTCGATAAACATGCATATGGTCCTATCTTTTGAGCTCTTCAACTTGGGTATAATAACCATCTTTAGAAAGTTTGCTACGGAAATATTCTGCGAATAGGTATGCCCAGACTATGCCATCCTAAAGTTGAAATCGATAGGCAAGAAGGCCGGTTAGGGGAGTAAACAAAGTTGAGGCGCTATTAGGGTAACTGATCAAAGAAGAAAACCGTAGTAGTGACCAGACGAGATGATTATTAAATCATTATTATTACATAATAAATAAGTATAATCTATTAAGAGGTTAGAAGGAATAAAATTTTAGCGAAAATATGATAAAATGAAATCCTATTTATTAGAAGATGATGTTAATTACAAGATATTAATACTTTATATATTAAAAAGTCTTAATACCGATACAAAAAGAGAAATTTATGAAAAATTATTGATGTATGAGATAATAAAAGAAACAACCCAAGATTTTGGTATAGACTTATATGATGATATAGAATTATTTATAGAACAATGATAAATTATTTATACTTACAATTCTGGAAAGAAACTAAAGAAGGAATAGAAGTACTTGAAAAACTACTAGTTGAAATTTTTTACAAATATTTGAGAACTAGAGAAAGTGAATATTTAGAATATATTACAAACAACGTTAATGAAATACAAAGATTAGATCTACTTAAAAAAAAATATTATGAAAAAATATTTTACTCTTAAAACTATGAAGAATAATCAAACATCAAATAAAGCTACTATAACAAAAACTAAAATAGAAAGAAAGGTACGAAAGACACAGAAAAAGTTAAAAACCTTATATATAAAATATGAATTATTACAACTTTCTAAAACAAATAATAGTAAAACAAATCTTTTGATAGATATAATTTCTAAAACAAAATATAAGTATGTTCGTTACCTGAAAAAACAATATGAACAAAGAAACATAGAAACAACAACTGATAGAGAAGATAATTGAAAAATAGAAAAGAATTACAACACAGGAAAGAAAGATTAGAAGAAAATATGTTAGCAGGAGTATGTAATAAATCAATATTAGCACAAAGAAAAGTTATATTTATGCTAGAAATACAAATAGATTGCCTAGAATACAAATTACAACATGATATAAGCTATAACACGAACCATAATGAATAAAGAAGAATTTGCAGTAGACCAAAAGACATATGAAAATCAAGATGGCTTAGTAATAAAAATAATATTTTTCAAATTTAGGAAGACGATATAAAAAATAGGAAATAACTTATATTTAATGTTAGAAAAAGAAACAACAAAATTAGAAAATAGTTTGACAGCTATGGTAAGAATAACAAAGGAAAATGAAGAAATAGATAAATCAAAAGAAATTGAAAAAATAAAAGCAAAGCAAGAAGTACAACATCTAGAAGAAATAAAAAATACAAGAATAAGTGAATTAGAAAAAGAATTAGCTAAGCTAAAATTATTATATGAAACCAAACAAAAAGAGAAACAGGTAGAAAAAGATAAAGAACTTGAATTAACTAATGAGATAAATAAGATGAAACAAAAATTAAATGAAAATCTTGAAATAGACGAAATAAATGAATCAGATACAATAAACTATCAAAACTTAGAAATAAGTGATATAAGTGAAACATACACAGAAATTCTAGAACAAGTAAATAAGCCGAAAAAATTAGAAATAAATACAGGAGATATAAATCAACCCAGCACATCAAGAGTTAAAACCCAGATAATAGTCCTAGAAGTAGTCCTAAATGGACAACACCAACTTATTATACAGAGAATTATGAACGATCAGATTAAACAAATGCAATATGGAATAGCGGGTTAAATAAAAAATGGACGCCTAGATCAATAACTGAACAATATAACTTTTTAGATCTAGATTGTGTTACAGATATAAATAAAGCAATATTACTATGGGTTAGAAATATATCTAAACAATTAATTGATAACAAAATAACAACAAAAGAAACACCAGGATATATAGAAAGAACATTTGTTGGAACAACAAAATTATGGATAGGAAATTTACCCCAGAAAGTCGAGAAACACTTAGAAGTGACAAGAAAATAGATGGATCTCCATCAACAACAAATATAGATATACTAGATAAATACGAATTAGCAATACGGAATAAATTTGGAGGTATGACCACAGAAATAAAAGAACAAAATAGAGAAAAAACAATAAATAGACAACTTATGACAAAATTAGCTATATGTAAAATGTGTTATATAGAAGAATACACATGCGCATTCAAAGAATATTATTACAAAGCAAGATATGGTATAAATGAAGCAAAAGAAATAAGACAACAATATTTTACAAAACTACCAGAACCATTTAGTACAAAAATAATTAAAGACTGGAACAATGAAGGATTAACAGATACTTTAGGAGCTAGAATAAGATTTTTACATCAATGGTTTGTAGAATTATGCGAAAACCAAAAAGAAAAAATAAAAATGGAAAAAGTACTAATTAAAAATCTAGCCTGTTGTAAAATAAAACAGCACCACAATTTGGATGTACAAATAAATATTATAAAAAACAAAGACCTAAACGACACAAAAATTATAGAAAAACCAAAACTAGATATAAATACAAAAAACCAAGACAAAAATATTATGCAAAAAATTATAAAACAAAAAGACCGTATAGACCAAAGAGAAAACTATCAGAATGTACTTGTTATAACTGCGGAAAGATAGGACATTTAGCTAGAGATTGTAAGTTACCTAAAACTCCAAAAGGAAAACAAATTGCAGAATTAATTATAGATAAGAGGAATACATGCAAATAGAATATATAAACTATGAACTAAGTGAAAACGATAGTATATATGAAGTATCAGATATAGAAACTGAAAATGAAGAAGAAAATATTGATCTAGAAAATGATGTAATGAACGAAGAAATCTAATGTCTGAAGACGACATAAAAATAATATCTAAAGAAGACTATCAAAATGAAGAATTATCAGAACAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGATTTAAGTGTTGAAAAAATACTTGAAATACCTACCTTAAGGAATTGGTTTAAAAGACAAAAAGATGAATATTATATAGTTAGCCAGAAAGAACACATCATAGATTGCAAATATACAAAAGGAAAGGCACAAATACCTATACTAAATAAGAGGATAATTAATAAAGAAATACAAGATATAAAAGCTAAAACACCCATAAAATACGTACATTTAGGAGGAACAGAAATATTGATAAAAGCATGTGTTAGAGAAGGAATAGACACACTTATTGAAATATACTTAGCAGATGATAGAATTATACACCCTATAGAAAAAAGTGTAATAAGTGCAGTAAGAGGAAATTTAATATACCAAAAATTTAAATTTATAATAAGTGCCAACTACTTAGTAGCATTAACATATAGAAATATAGATAAATCATTAGTTCTATATTGGAAAATGTCTGAAATAGAATTAGCACCAGGAAGTAAAATATTTACAGCAAGATGTAAGAACCTATATATACTAACAACAAAACATAAAGTAACAGCAAGAAATAAAAAATTGATAGAATAAAGGTAGAAAATCCTTTTGAAAAAATAATTACCATAATAGACAACAATGACTATAGCTATAAAGAAATAGACATAGAAGAAGATTTAGAAATTGTAAAAGAAAGATTAAGCACTTCAAGTGTACCAAATACATTAACGAGAGCTACATCATCAAGAATGAGCACATCTAAAAGAAATTATGAAATCTCACAAAATTTATTAGATAAAGAAGAGATAACACCATACCATTACTTTATAACAGGGATAATAGACCAAAGAAGATATAAAATTTTGATAAATACAGGACAAGAAGAGAATTATATAACGAGAGAATTAGTATTAGAAACAGAAATTATAGAAACAAGACACTTATGCCCCGGATTACCTAGTGAAATAGTAAACACAAACGAAGAGATGACAGAAAAAGAAATAATTATAGGAGGAATACCCTTGATAATACCATTTAAAATCTACCAAGGAAACCAAAATATTACCTTAGGAATAAAATGGTTAGAAAAAGTTAAACCATATAATATAGAAAATGAACAATTAACAATAACTTGCCAAAATAAGAAGATAATTATCAAAAGAACAAATGAATAATGAAAATTTATATACTTGCAAAAATTACTGTAGAAGGATACCACAACAGATATTATACCCCTATGATAGATACAGGAGCAGAAGCGAATATATGTAAATATAATTGTTTACCAGAAGATAAATGGGAAAAATTAAAAACACCTATGGTGGTAACAGGATTTAATAATGAAGGAAGTATGATTGCATATAAAGCAAAAAATATAAAAATACAAATATGGGATAAAATACTAACAATAGAAGAAATGTACAATTTTGAATTTACAACAAAAGGTATGTTATTAGAATGTCATTTCTAGAAAGATTTTATCCACATATTATAACAAAAACACATTGGTGGTTTACTACACCATGCGGAAATAAGATAAGAGCAAAAAGAGTAAATAATAAACAACGTAAACCTATAGAATGGATAAAAAGAAGTGAAAAGATAAACCAAGAAATGGAAAATATAAATAAAAATCAAACAACACAATTAGAAATTATCATATTTACAATAGATAAAGTTAAAATAATTAACGAACAACTAGAATTATTATATATTGAAAATCCATTACAAGGATGGGAAAAGCATAAGATGAAAGTAAAAATTGAATTAATAGATGAAAATAGTATAATAACACAAAAACCATTATAATATAATTTTGATGATTTAAAGAATTCAAAATACATATAAATGAACTATTGAAGAATAATTATATACAAGAAAGCAATAGTAAACATACAAGTCCAGCATTTATAGTTAATAAACATAGTGAACAAAAACGAGGTAGAAGTAGAATGGTTATAGATTATCGCAACCTGAATGCTAAAACTAAAACATATAACTACCCAATACCAAATAAGATACTAAAAATAAGACAGATACAAGGATATAACTATTTCAGTAAATTTGATTGTAAATCAGGATTTTATCACTTAAAATTAGACGAAGAATCTAAACAGCTAACAACATTTACTGTACCACAAGGATTTTATGAGTGGAATGTTCTACCATTTGGATATAAAAATGCACCAGGTAGATTCCAACATTTTATGGACAATTATTTTAATCAATTAGAAAATTGCATTGTTTATATAGATGATATATTATTATATTCAAAAACACAAGATGAACATATTAGATTATTAGAAAAATTTATACATATAATTAAACATTCTGGTATAAGCTTAAGTAAAAAGAAAGCATAAATTATGAAACCACGAATAGAATTTCTAGGAATACAAATAGATAAAAATGGAATAAAAATGCAAACACATATAGTACAAAAAATTGTTAATAGTGATGAAAATATAGATACAAAAAAGAAATTACAATCATTTTTAGGAATAGTAAATCAGGTAAGAGAATACATACCAAAATTAGCAGAATACCTAAAACCATTACATAAAAAAACTTAGGAAAGATGTTGAATATTATTTTGATAATAAAGATAAAGATCATATAAGACGTATCAAGAATTTATGCAAAAAATTACCAAAACTATATTTTCCGGATGAAGAAAAATGATTTATATATATATTAGAAACAGACTCAAGTAATTATAGTTATGGAGGAGTTTTAAAGTACAAATATGATAATGAACAAACTGAACATCATTGTAGATATTACTCAGGATCATATACAGAAGCACAATTAAAATGGGAAATAAACAGAAAAGAGTTATTTGCATTATATAAATGTTTATTAGCGTTTGAACCATATATAGTTTACAATGAATTTATTGTGAGAACAAATAATGCACAAGTTAAATGGTGGATTACTGGAAAATTACAAGATTCAGTTACAACTAAAGAAATAAGAAGATTGGTATTAAATATACTAAATTTTACAGTTACAATTGAAGTAATTAAGACTGATAAAATTTTTATTGCAGACTATCTCTCCAGAAGAAGATACAATGGAGAAAATACTAGCTATGATGACAAACCTTTGTCAAAAGGTGGAGAAGATAGAAAACGAAGTACAAGTATTAATAGAAACATTTAAAAACCAGCAGCATGACGGAGCTAGAAGGTGACGTTGGGAAACACCTA</genome_strand>
        <mrna_strand>TAATAATTTTGGAATTTCAATTTGAAATTCTGTTTACAATGGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATGATGTCACTGATATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATCTCTGCAGAAGAAGATACAATGGAGAAAATACTAGCTATGATGACAAACCTTTGTCAAAAGGTGGAGAAGATAGAAAACGAAGTACAAGTATTAATAGAAACATTTAAAAACCAGCAGCATGACGGAGCTAGAAGGTGACGTTGGGAAACACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273688" ref_strand="+" ref_description="SGN-E273688 [cLEN-6-L6]">
      <seq>tcaacacttttgcaggttgagaggtggacgttaaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatgatgtatggttttggagatgatagcaatccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="78361" stop="90225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89017" g_stop="89031" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89032" i_stop="89665" i_length="634">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89666" g_stop="89799" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="149" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89800" i_stop="89887" i_length="88">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89888" g_stop="89925" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="187" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89926" i_stop="90027" i_length="102">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.597" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90028" g_stop="90032" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="192" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E273688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89017" e_stop="89031"/>
          <exon e_start="89666" e_stop="89799"/>
          <exon e_start="89888" e_stop="89925"/>
          <exon e_start="90028" e_stop="90032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACTTTTGCAGGTTTCTCTTCGGAATTCTTTTTCTCTTTTACGATCCTAATTGTGATTGTGACTGCAGAAATTATAATTAATGTTTTATGTGCTCTTGCATTTTCTTCCTTTTCTTCAATACATTGGCACTCCTGGTCTCCTGGATGTTGATTGTTTGATAACTGTGTTATTATTATTATTTTTGTTGTTGATCGATATGCCCAATTCGCGTCTGTCCCACCTTGGATTTTGTATAACAAAGCTTCAGTAATGGCTTCCACACAATGTACATATAGAAAAAAAATAGATTTAACTTTTAATCTTTCATGAATTCTATTATTTGATGATCATTTACAGTAAAAGAACTTTTTTCCAGTTATATATGGGTTGTGTATATATTGGGTGCTTATTTTGGGAGCTGCATAGAAGAATGCATGTTCCATCTTTACCATGAGCTTCCTTTTTTATAGAACCGGAAAATTTTGAGCTAATTGTGTAGGTGGTTAAGTGGTGATAACCATTATAAGAACTATGGAAGTGCATTCTTTGTGCGTTCAGTTTTCTATTTTCTTTTCAATGGTACTTGCGTGATGTATCTGTCAGATAATTATATATAATACGTTTGATTGATGGTATTTGCTAAGGATGGTATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTGACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTATTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGATGTATGGTTTTGGAGATGATAGCAATGTAAGATGCCTCTTTGTTTCACTTTTTATCTCTTCATTGTTTTTCATCTGCGTATGTCCATGGTGTTTATACGCGTTGATTGTTGTGTGTATGGCAATACAGTGAAT</genome_strand>
        <mrna_strand>TCAACACTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT......................................................................................................CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225231" ref_strand="-" ref_description="SGN-E225231 [cLEL-17-B8](-)">
      <seq>aacacttttgcaggtagagaggcggacgttcaaataaattgaaaatgaacaactcttctgcagggccatcctcaaaagctagagtaggagcatcacaaccttcagaaagttcacttaagaggaaacgtggcatgtttcagaaagatttgcaacacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="89354" stop="90099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89653" g_stop="89799" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89800" i_stop="89887" i_length="88">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89888" g_stop="89899" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="159" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E225231" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89653" e_stop="89799"/>
          <exon e_start="89888" e_stop="89899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATTGTTAGTGACTCTTTATGTAGATGTGATAATAATGTTAAATCACTTCATCTTGTATTATTTATTAATATTTCTTTTATTTATTACACAGTGCAACACATGA</genome_strand>
        <mrna_strand>AACACTTTTGCAGGTAGAGAGGCGGACGTTCAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT........................................................................................TGCAACACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354702" ref_strand="+" ref_description="SGN-E354702 [cLHT-5-D15]">
      <seq>aaaaacatttgacacaaataaagattgaattaatagatgaaaacaacataataaaacaaaaaccattaaaatataatttggatgatttaaaagaattcaaaatacatatagatgaactattagagaataattatatacaataaaacaatagtaaacatacaagtccagcatttatagataataaacatagtgaacaaaaacgaggtaaaagtagaatggttatagattatcgcaacctaaatgctaaaactaaaacatataattacccaataccaaataagatactaaaaataagacaaatacaaggatataactatttaagtaaatttgactataaatcaggattttatcacctaaaattagaagaagaatctaaaccgctaacagcattcacagtaccgcaaggtttctataaatggaatattttaccttttggatataaaaatgcaccaagtagatatcaacattttatggataactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="95330" stop="96399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95616" g_stop="96099" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E354702" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95616" e_stop="96099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATAAGATGAAAGTAAAAATTGAATTAATAGATGAAAATAGTATAATAACACAAAAACCATTATAATATAATTTTGATGATTT-AAAGAATTCAAAATACATATAAATGAACTATTGAAGAATAATTATATACAAGAAAGCAATAGTAAACATACAAGTCCAGCATTTATAGTTAATAAACATAGTGAACAAAAACGAGGTAGAAGTAGAATGGTTATAGATTATCGCAACCTGAATGCTAAAACTAAAACATATAACTACCCAATACCAAATAAGATACTAAAAATAAGACAGATACAAGGATATAACTATTTCAGTAAATTTGATTGTAAATCAGGATTTTATCACTTAAAATTAGACGAAGAATCTAAACAGCTAACAACATTTACTGTACCACAAGGATTTTATGAGTGGAATGTTCTACCATTTGGATATAAAAATGCACCAGGTAGATTCCAACATTTTATGGACAATTATTTT</genome_strand>
        <mrna_strand>AAAAACATTTGACACAAATAAAGATTGAATTAATAGATGAAAACAACATAATAAAACAAAAACCATTAAAATATAATTTGGATGATTTAAAAGAATTCAAAATACATATAGATGAACTATTAGAGAATAATTATATACAATAAAACAATAGTAAACATACAAGTCCAGCATTTATAGATAATAAACATAGTGAACAAAAACGAGGTAAAAGTAGAATGGTTATAGATTATCGCAACCTAAATGCTAAAACTAAAACATATAATTACCCAATACCAAATAAGATACTAAAAATAAGACAAATACAAGGATATAACTATTTAAGTAAATTTGACTATAAATCAGGATTTTATCACCTAAAATTAGAAGAAGAATCTAAACCGCTAACAGCATTCACAGTACCGCAAGGTTTCTATAAATGGAATATTTTACCTTTTGGATATAAAAATGCACCAAGTAGATATCAACATTTTATGGATAACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392209" ref_strand="+" ref_description="SGN-E392209 [TUS-36-A16]">
      <seq>gcaggaagcacatctattggaagcacatatgcaggaggaacatctacaaaaaaagaaggtaagatgaaatatacaaacacaaatgaacaaactattctctaaaccatactctccacaaaatacccaaaaagatatgttcgtaccccacaaataaatacttacaaagccagtctagattcacaaaaacaaacatataatcacattaacagaatgtatatagaaaatatatacaagatacaaacttttctaaacctaaaccctagagcaaaagataccaaaaatccaaacgaaaattttatatcacccaatacctacaaggatacaacaaactaatagcacaaccaggaacaaatccaaatctagtagcaacttgctacaattacgggctaataagcacagtatatactataactggagacgaagtagggggggacctgagctacatgaggcatttctgcaatataaaagaataactaaaggaactttattttatataaagttctactcagcaacagcagaaatactatatgaagaaattaaacctacaatacaagttattaagatagatttaactagagatatgataatactagaaaaaatagatatacaagaagagatacagaaggtggatatcccagatttttatgcaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="96817" stop="98072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97117" g_stop="97772" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E392209" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97117" e_stop="97772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAA</genome_strand>
        <mrna_strand>GCAGGAAGCACATCTATTGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAG-GGGGGGACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397850" ref_strand="+" ref_description="SGN-E397850 [TUS-36-A18]">
      <seq>gcaggaagcacatctacaggaagcacatatgcaggaggaacatctacaaaaaaagaaggtaagatgaaatatacaaacacaaatgaacaaactattctctaaaccatactctccacaaaatacccaaaaagatatgttcgtaccccacaaataaatacttacaaagccagtctagattcacaaaaacaaacatataatcacattaacagaatgtatatagaaaatatatacaagatacaaacttttctaaacctaaaccctagagcaaaagataccaaaaatccaaacgaaaattttatatcacccaatacctacaaggatacaacaaactaatagcacaaccaggaacaaatccaaatctagtagcaacttgctacaattacgggctaataagcacagtatatactataactggagacgaagtagctaaaatacctgagctacatgaggcatttctgcaatataaaagaataactaaaggaactttattttatataaagttctactcagcaacagcagaaatactatatgaagaaattaaacctacaatacaagttattaagatagatttaactagagatatgataatactagaaaaaatagatatacaagaggagatacagaaagtggatatcccaaatttttatgcaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="96817" stop="98072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97117" g_stop="97772" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E397850" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97117" e_stop="97772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAA</genome_strand>
        <mrna_strand>GCAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAGGAGATACAGAAAGTGGATATCCCAAATTTTTATGCAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377059" ref_strand="+" ref_description="SGN-E377059 [TUS-21-C1]">
      <seq>caggaagcacatctacaggaagcacatatgcaggaggaacatctacaaaaaaagaaggtaagatgaaatatacaaacacaaatgaacaaactattctctaaaccatactctccacaaaatacccaaaaagatatgttcgtaccccacaaataaatacttacaaagccagtctagattcacaaaaacaaacatataatcacattaacagaatgtatatagaaaatatatacaagatacaaacttttctaaacctaaaccctagagcaaaagataccaaaaatccaaacgaaaattttatatcacccaatacctacaaggatacaacaaactaatagcacaaccaggaacaaatccaaatctagtagcaacttgctacaattacgggctaataagcacagtatatactataactggagacgaagtagctaaaatacctgagctacatgaggcatttctgcaatataaaagaataactaaaggaactttattttatataaagttctactcagcaacagcagaaatactatatgaagaaattaaacctacaatacaagttattaagatagatttaactagagatatgataatactagaaaaaatagatatacaagaagagataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="96818" stop="98038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97118" g_stop="97738" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E377059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97118" e_stop="97738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAAGAGATACA</genome_strand>
        <mrna_strand>CAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAAGAGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231830" ref_strand="+" ref_description="SGN-E231830 [cLED-7-O7]">
      <seq>caggaagcacatctacaggaagcacatatgcaggaggaacatctacaaaaaaagaaggtaagatgaaatatacaaacacaaatgaacaaactattctctaaaccatactctccacaaaatacccaaaaagatatgttcgtaccccacaaataaatacttacaaagccagtctagattcacaaaaacaaacatataatcacattaacagaatgtatatagaaaatatatacaagatacaaacttttctaaacctaaaccctagagcaaaagataccaaaaatccaaacgaaaattttatatcacccaatacctacaaggatacaacaaactaatagcacaaccaggaacaaatccaaatctagtagcaacttgctacaattacgggctaataagcacagtatatactataactggagacgaagtagctaaaatacctgagctacatgaggcatttctgcaatataaaagaataactaaaggaactttattttatataaagtgctactcagcaacagcagaaatactatatgaagaaattaaacctacaatacaagttattaagatagatttaactagagatatgataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="96818" stop="98006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97118" g_stop="97706" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E231830" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97118" e_stop="97706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATA</genome_strand>
        <mrna_strand>CAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTGCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242240" ref_strand="+" ref_description="SGN-E242240 [cLED-37-D20]">
      <seq>caggaagcacatctacaggaagcacatatgcaggaggaacatctacaaaaaaagaaggtaagatgaaatatacaaacacaaatgaacaaactattctctaaaccatactctccacaaaatacccaaaaagatatgttcgtaccccacaaataaatacttacaaagccagtctagattcacaaaaacaaacatataatcacattaacagaatgtatatagaaaatatatacaagatacaaacttttctaaacctaaaccctagagcaaaagataccaaaaatccaaacgaaaattttatatcacccaatacctacaaggatacaacaaactaatagcacaaccaggaacaaatccaaatctagtagcaacttgctacaattacgggctaataagcacagtatatactataactggagacgaagtagctaaaatacctgagctacatgaggcatttctgcaatataaaagaataactaaaggaactttattttatataaaagtctactcagcaacagcagaaatactatatgaagaaattaaacctacaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="96818" stop="97969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97118" g_stop="97669" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E242240" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97118" e_stop="97669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACA</genome_strand>
        <mrna_strand>CAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAAGTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392455" ref_strand="+" ref_description="SGN-E392455 [TUS-36-A18](-)">
      <seq>aaaaaatagatatacaagaagagatacagaaggtggatatcccagatttttatgcaaacaaaagaactattgggatagctaccatattaaatgagttatcaaacactacctaaatgaaaatgcaatttggagttattacaacagagatcaaacaatgatatactccaattgtagagatataagagcagcagatatggaagaagtacgacaatggatattaagtctgctgaagccagaacaaacacctacaacaagagctatcaggaaaaaattcatttctccaaacttgatgaccagatactgcaaactaattggacaaaagtattcagatcatctatgtacaaaatgcgacggagaagataactatattcctgaagtccagctagaatgaagacatatgtaaagtatgaatagtagtgtctgtaaagtatgaatagtagtgtcggccatatttaaaaaagcaaaggccagtatataaagaagtaaagttgtaaatagtatgtcggccatataaaaaataaaggccaattatgtgtgaaagtattttgttttcttgtgtcggccgaatataaataggccaggtgtaaagtgttgtatgtaaaggagtgtcggccatttggccaaagtgttgagttttcttgtataaatagagggctttccctcataataaaatcatccctttcctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="97411" stop="98700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97711" g_stop="98408" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E392455" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97711" e_stop="98408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAAAGAACTATTGGGATAGCTACCATATTAAATGAGTTATCAAACACTACCTAAATGAAAATGCAATTTGGAGTTATTACAACAGAGATCAAACAATGATATACTCCAATTGTAGAGATATAAGAGCAGCAGATATGGAAGAAGTACGACAATGGATATTAAGTCTGCTGAAGCCAGAACAAACACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTCTTGTATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCCTTTCCTCTATATCTCTCTC</genome_strand>
        <mrna_strand>AAAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAAAGAACTATTGGGATAGCTACCATATTAAATGAGTTATCAAACACTACCTAAATGAAAATGCAATTTGGAGTTATTACAACAGAGATCAAACAATGATATACTCCAATTGTAGAGATATAAGAGCAGCAGATATGGAAGAAGTACGACAATGGATATTAAGTCTGCTGAAGCCAGAACAAACACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTCTTGTATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCCTTTCCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377058" ref_strand="+" ref_description="SGN-E377058 [TUS-21-C1](-)">
      <seq>aaaaatagatatccagaagagatacagaaggtggatatcccagatttttatgcaaacaaaagaactattgggatagctaccatattaaatgagttatcaaacactacctaaatgaaaatgcaatttggagttattacaacagagatcaaacaatgatatactccaattgtagagatataagagcagcagatatggaagaagtacgacaatggatattaagtctgctgaagccagaacaaacacctacaacaagagctatcaggaaaaaattcatttctccaaacttgatgaccagatactgcaaactaattggacaaaagtattcagatcatctatgtacaaaatgcgacggagaagataactatattcctgaagtccagctagaatgaagacatatgtaaagtatgaatagtagtgtctgtaaagtatgaatagtagtgtcggccatatttaaaaaagcaaaggccagtatataaagaagtaaagttgtaaatagtatgtcggccatataaaaaataaaggccaattatgtgtgaaagtattttgttttcttgtgtcggccgaatataaataggccaggtgtaaagtgttgtatgtaaaggagtgtcggccatttggccaaagtgttgagttttcttgtataaatagagggctttccctcataataaaatcatccctttcctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="97412" stop="98700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97712" g_stop="98407" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E377058" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97712" e_stop="98407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAAAGAACTATTGGGATAGCTACCATATTAAATGAGTTATCAAACACTACCTAAATGAAAATGCAATTTGGAGTTATTACAACAGAGATCAAACAATGATATACTCCAATTGTAGAGATATAAGAGCAGCAGATATGGAAGAAGTACGACAATGGATATTAAGTCTGCTGAAGCCAGAACAAACACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTCTTGTATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCCTTTCCTCTATATCTCTCT</genome_strand>
        <mrna_strand>AAAAATAGATAT-CCAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAAAGAACTATTGGGATAGCTACCATATTAAATGAGTTATCAAACACTACCTAAATGAAAATGCAATTTGGAGTTATTACAACAGAGATCAAACAATGATATACTCCAATTGTAGAGATATAAGAGCAGCAGATATGGAAGAAGTACGACAATGGATATTAAGTCTGCTGAAGCCAGAACAAACACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTCTTGTATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCCTTTCCTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392208" ref_strand="+" ref_description="SGN-E392208 [TUS-36-A16](-)">
      <seq>cccccccccccccccactcacctacaacaagagctatcaggaaaaaattcatttctccaaacttgatgaccagatactgcaaactaattggacaaaagtattcagatcatctatgtacaaaatgcgacggagaagataactatattcctgaagtccagctagaatgaagacatatgtaaagtatgaatagtagtgtctgtaaagtatgaatagtagtgtcggccatatttaaaaaagcaaaggccagtatataaagaagtaaagttgtaaatagtatgtcggccatataaaaaataaaggccaattatgtgtgaaagtattttgttttcttgtgtcggccgaatataaataggccaggtgtaaagtgttgtatgtaaaggagtgtcggccatttggccaaagtgttgagttttaaaatataaatagagggctttccctcataataaaatcatccaattcctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="97649" stop="98700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97954" g_stop="98408" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="474" r_length="455" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E392208" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97954" e_stop="98408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTCTTGTATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCCTTTCCTCTATATCTCTCTC</genome_strand>
        <mrna_strand>ACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTAAAATATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCAATTCCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375545" ref_strand="+" ref_description="SGN-E375545 [TUS-34-F18](-)">
      <seq>ggaatccatcatgtagatgcattgtttatatgaaacttctgggctagttagttgacatcaggttactgcttgcttcatggctttggcatttcccttggatttgtaaaatctttaccgtatcagaaatctgtgacaatctttaccgtgtctggatgttggtgacactagttttggtagtttagtttcgcctcatcgagctcaggaaaccggttaatcagtatgcaatttataagagtgaggactgaggacttcattgcactccttaattttgcaatgatatctccatgtcttattacttctaatattgcacaatgaaaattttctatttattttgaaggtaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="105513" stop="104571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105213" g_stop="104872" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="357"/>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E375545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105213" e_stop="104872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCCATCATGTAGATGCATTGTTTATATGAAACTTCTGGGCTAGTTAGTTGACATCAGGTTACTGCTTGCTTCATGGCTTTGGCATTTCCCTTGGATTTGTAAAATCTTTACCGTATCAGAAATCTGTGACAATCTTTACCGTGTCTGGATGTTGGTGACACTAGTTTTGGTAGTTTAGTTTCGCCTCATCGAGCTCAGGAAACCGGTTAATCAGTATGCAATTTATAAGAGTGAGGACTGAGGACTTCATTGCACTCCTTAATTTTGCAATGATATCTCCATGTCTTATTACTTCTAATATTGCACAATGAAAATTTTCTATTTATTTTGAAGGTAAT</genome_strand>
        <mrna_strand>GGAATCCATCATGTAGATGCATTGTTTATATGAAACTTCTGGGCTAGTTAGTTGACATCAGGTTACTGCTTGCTTCATGGCTTTGGCATTTCCCTTGGATTTGTAAAATCTTTACCGTATCAGAAATCTGTGACAATCTTTACCGTGTCTGGATGTTGGTGACACTAGTTTTGGTAGTTTAGTTTCGCCTCATCGAGCTCAGGAAACCGGTTAATCAGTATGCAATTTATAAGAGTGAGGACTGAGGACTTCATTGCACTCCTTAATTTTGCAATGATATCTCCATGTCTTATTACTTCTAATATTGCACAATGAAAATTTTCTATTTATTTTGAAGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623974" ref_strand="+" ref_description="SGN-E623974 [89119]">
      <seq>caccatcagggacacaaggagcttctcttgaagatatagaaatggagaagaaagaggaagccgttgaagatgaagataatggtccaccgccaggatggcaattgacccctcaactactgcctctacagacatctacatcaccatcagggatacaaggagtgcctcttgctgcttttgtagacgttgaaatggcgagcaaccaggactgtgatgttgaaaaggaaggacatccactgggattagaatccgttcctatgaatggacattcatcaccacctacaccaccacctcagtcgtcatcatcagttgcttcttctgaaatggagatgggtcgcaaacaagaaggcacaaagaatgaggaggaaaggccccaaattgaaaagcaaccaatgtcgcatttactacagatgaaacctatagtgcctcaagcctcatcacatgctgcaacagtttcttccgaaatgggtcagatggtatgtggtggttgccgacagttactttcttatccacaaggggctaaattggtgaagtgttcatgctgccaaaccgtcaatcttgtgctagaagctcatgaggttggacaagttaagtgtgggggttgtgcagtgctgctcatgtatccgtatggggccccatcagttagatgttcctcttgtcgccacatgacaaaaattggggcccacaaccgacgaccacctcaatcagtgcaacagcctcgaagaaacattcttcctaccaagttcattagccttgcttatctcgaatctgattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="109036" stop="104914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108736" g_stop="108704" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108108" g_stop="107971" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="171" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107970" i_stop="107042" i_length="929">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107041" g_stop="106941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="269" r_length="98" r_score="0.802"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106940" i_stop="106867" i_length="74">
            <donor d_prob="0.917" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106866" g_stop="106822" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="314" r_length="45" r_score="0.467"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106821" i_stop="106722" i_length="100">
            <donor d_prob="0.000" d_score="0.47"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106721" g_stop="106577" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="459" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106576" i_stop="106464" i_length="113">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.509" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106463" g_stop="106356" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="567" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106355" i_stop="105798" i_length="558">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.395" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="105797" g_stop="105688" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="677" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="105687" i_stop="105311" i_length="377">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="105310" g_stop="105214" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="775" r_length="98" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E623974" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108736" e_stop="108704"/>
          <exon e_start="108108" e_stop="107971"/>
          <exon e_start="107041" e_stop="106941"/>
          <exon e_start="106866" e_stop="106822"/>
          <exon e_start="106721" e_stop="106577"/>
          <exon e_start="106463" e_stop="106356"/>
          <exon e_start="105797" e_stop="105688"/>
          <exon e_start="105310" e_stop="105214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCATGGACACAAGGAGCTTCTCTTGAAGGTGAGTCCTTTCCTATTCACTCAGATGAGTATCCATGTTCACAAGTGCAATTTTTATTTTCTTTGGCTTTGGTATATGCTAAAATACACTAATCTCTTGTACTTGCCATTTGTACATGCATACTTGTGCTTTTCGTTTTCTCTGAATTAGTCCACAACACCAATCGGGCTTCGTTTATGTGACATACCTGTAAGTTCATATTTATTGATCAGTATGGTATGAGAGATGACATGCCCCAATGTCTTTGTGTTGATTGAAACTGCAGGTGGATGTGATTGAAGGTGGGCCAAACTGAGAAGCAATTAATTCCATAGAACATGTCGAAAATACAAGTGATGAATTATTATATCCAAGATAAGAGAATAATCAAGAAATAATAAAAGCTAATATTTGCCAAATGATTAATATAATCAATTGAAAGTAATTCTATGCTAGGCTTGTGATAGCATTAGTATCTTCTGTGTTATGGATGCCCTCATGTGTGGTTAGATGTTGGCTTCATCTAGTTGTCACTTGTCCAGTAAGATTATGAGGAATTTGGGGATGCGTGAGTTCTTTATATTTGGTTCATCAGAATTAGCATTCTGACTTTCAGATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTGGTGAGTCCTTTTTTTACTCAGATTCGAAATGTCCGTGGTTACAAGTTCAATTGGTATGTGCTAAAATACACTAGTCTCAATTACTTGCCATATGGACTCAAGCTTGTGTTTTTCTGATATAGTTAGCAATCGGGCCTCGTTTATGTAACAGACCTTCAGTGTAAGATCATGCTTGTTGATCAATATGGTAAGAGAGGTGGATCTGACCCTGTGTCTTTGTATTGATTGAAACTGCAGGTGGGATGTGATTTAGTAAGGAGGCCAAACTGAGAAGAAATTAATTTCATTGAACATGTAAAAATGACTAGTGATGAAGTATATTGAAATATGAAAATAATCAGTGGACAATACAAGCAACAGTGTGGCTCAATCCCAACTAGTAGGGTCGTCTATACGAGTCCTCCATATCCATTCTGCTCTATATGGGCTCGGTTTCATTCCAATACTCAATTATTGTCTACTAAGACAAATTAGGGGTGAATATGTGGAAAAAGTTCTAGCTGTGGTATGGCCAAAATTTATAAGCATAAAGCATGAGAGGTTCTCATTAAGTAAACAAAGTTTTTAAGAAAAATATCTAGGGGTTCATAGCTTAAAGGCTTGTGGGTCTGTAAAAGTTCAGATTAGCGGTATCAAAATTTGACATTTGGTTTCTTTGGAGCCAACCTTCGACTATTTCTGCCTTCTAACCTTAACCTATGAGTTAGCAATTTGACTCAATTGCCCGAGTCCCGATGTTTCAAACATATATACAAGTTTGCCATATAGTTTTTTTGTTCCGATGTTGTGCATGTAGATAGCAAAGTGGCTAGCAGCTGCTGATATGTCAATTCCATACAAGAAATTATATCTGGGTTTGGTGCTAAATTTGCAGTGGACAAATTCTATTTATTCAGTATCCTTAAAGTTTTGTAACTAGCTAACATTAGCTTTTGTAGACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATCGCCTACACCACCACTGCAGTCGTCATCACCGGTTGCTTCTTCTGGTAAACTCTACTACAATGCCTTAAAATAACATACAAGTATATGCAATGGGTAGTATAGCAGTGAACCCCTGTTTCA-TGCCAAGGAGTTCAAGATAAGATTGACTTTGTTGTATTGTGTCGTTTTGGTTTCTTGATCTACAAGTGCATTTAGTATGTATACCTTTTCGGTGGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTTTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAGATAACGTATAAAATAACTTCTAATTGACAGTATGAACAGTTAGTTTTCTCCATGCTTTTTATTCAGGGATCCGCTTTTGGTAAATCGGAGCCCTGTTATCAATATGTTTAAGTACGTTAGGAACAACTGATGTAAAATAACCGTGTGGTGCAGCTTCATTCTGATTTTTCCTTCTGATACTGTAAGTTCTGTATCTATTGTGAACTGGCATACCAGACCACTCATACTTGGATAGAGAGGAAATAAATAGGAAACAGACATTTGCTTCACTTTCTTGTTTTCATGGATCTGTACAACTATCCTGGAGAATTTGATGGTTGAAGACCATCGACTCATTTCTATGGGGGGCTCACTCACGTGGTTCTGATTGTTCTCACTGCAGCTCATGAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCGCCATCAGTTAGATGTTCATCTTGTCGTCACATGACAAAAATTTGGGTATGGACTTCATTTCTTCAGAAATACTTGTGCAGTCATGTCAATTAATCATATGACATTTTTTTTTGGGTATCTGCATTTCCCTTTTGAAAAACTTAGCCTGGAGCTGAAATGTCATTTAGTCCTATTATACTTGTTAGCATGCACCACATATTAAGGTGGGATAATATGCGAGATGTCCTTTATGGCCATTTAACATGTTGCGTACAGCACTGGTAGTATACATTTTAAGCTAGAAATTTCAGATTACACGCATGATTTATATGTATATTTGTCTGTGATTTTGGAAAATGAATTGCGTCCTAGATTTCCCTCCTTTTTGTCAATATTGACTTTTGAGACATCTATGCTTCTGAACTTTTCTCCTGCATATCCAGGCCCACAACAGACGACCTCCTCAGTCAGTGCAACAGCCTCGAAGAAGACATCCTTCCTACCAAGTTCATTAG-CTTGCTTATCTCG-ATCTGATTTTGG</genome_strand>
        <mrna_strand>CACCATCAGGGACACAAGGAGCTTCTCTTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACATCACCATCAGGGATACAAGGAGTGCCTCTTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGTAGACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATTAGAATCCGTTCCTATG-AATGGACAT--TCA..........................................................................TCACCACCTACACCACCACCTCAGTCGTCATCATCAG-TTGCTTCT....................................................................................................TCTGAAATGGAGATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCAAATTGAAAAGCAACCAATGTCGCATTTACTACAGATGAAACCTATAGTGCCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCG.................................................................................................................AAATGGGTCAGATGGTATGTGGTGGTTGCCGACAGTTACTTTCTTATCCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAAACCGTCAATCTTGTGCTAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCCCCATCAGTTAGATGTTCCTCTTGTCGCCACATGACAAAAATTGGG.........................................................................................................................................................................................................................................................................................................................................................................................GCCCACAACCGACGACCACCTCAATCAGTGCAACAGCCTCGAAGAA-ACATTCTTCCTACCAAGTTCATTAGCCTTGCTTATCTCGAATCTGATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623975" ref_strand="+" ref_description="SGN-E623975 [89120]">
      <seq>caccatcaggacacaaggagcttctcttgaagatatagaaatggagaagaaagaggaagccgttgaagatgaagataatggtccaccgccaggatggcaattgacccctcaactactgcctctacagacatctacatcaccatcagggatacaaggagtgcctcttgctgcttttgtagacgttgaaatggcgagcaaccaggactgtgatgttgaaaaggaaggacatccactgggattagaatccgttcctatgaatggacattcatcaccacctacaccaccacctcagtcgtcatcatcagttgcttcttctgaaatggagatgggtcgcaaacaagaaggcacaaagaatgaggaggaaaggccccaaattgaaaagcaaccaatgtcgcatttactacagatgaaacctatagtgcctcaagcctcatcacatgctgcaacagtttcttccgaaatgggtcagatggtatgtggtggttgccgacagttactttcttatccacaaggggctaaattggtgaagtgttcatgctgccaaaccgtcaatcttgtgctagaagctcatgaggttggacaagttaagtgtgggggttgtgcagtgctgctcatgtatccgtatggggccccatcagttagatgttcctcttgtcgccacatgacaaaaattggggcccacaaccgacgaccacctcagtcagtgcaacagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="109036" stop="104972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108736" g_stop="108704" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108108" g_stop="107971" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="170" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107970" i_stop="107042" i_length="929">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107041" g_stop="106941" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="268" r_length="98" r_score="0.802"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106940" i_stop="106867" i_length="74">
            <donor d_prob="0.917" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106866" g_stop="106822" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="313" r_length="45" r_score="0.467"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106821" i_stop="106722" i_length="100">
            <donor d_prob="0.000" d_score="0.47"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106721" g_stop="106577" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="458" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106576" i_stop="106464" i_length="113">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.509" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106463" g_stop="106356" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="566" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106355" i_stop="105798" i_length="558">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.395" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="105797" g_stop="105688" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="676" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="105687" i_stop="105311" i_length="377">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="105310" g_stop="105272" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="715" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E623975" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108736" e_stop="108704"/>
          <exon e_start="108108" e_stop="107971"/>
          <exon e_start="107041" e_stop="106941"/>
          <exon e_start="106866" e_stop="106822"/>
          <exon e_start="106721" e_stop="106577"/>
          <exon e_start="106463" e_stop="106356"/>
          <exon e_start="105797" e_stop="105688"/>
          <exon e_start="105310" e_stop="105272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCATGGACACAAGGAGCTTCTCTTGAAGGTGAGTCCTTTCCTATTCACTCAGATGAGTATCCATGTTCACAAGTGCAATTTTTATTTTCTTTGGCTTTGGTATATGCTAAAATACACTAATCTCTTGTACTTGCCATTTGTACATGCATACTTGTGCTTTTCGTTTTCTCTGAATTAGTCCACAACACCAATCGGGCTTCGTTTATGTGACATACCTGTAAGTTCATATTTATTGATCAGTATGGTATGAGAGATGACATGCCCCAATGTCTTTGTGTTGATTGAAACTGCAGGTGGATGTGATTGAAGGTGGGCCAAACTGAGAAGCAATTAATTCCATAGAACATGTCGAAAATACAAGTGATGAATTATTATATCCAAGATAAGAGAATAATCAAGAAATAATAAAAGCTAATATTTGCCAAATGATTAATATAATCAATTGAAAGTAATTCTATGCTAGGCTTGTGATAGCATTAGTATCTTCTGTGTTATGGATGCCCTCATGTGTGGTTAGATGTTGGCTTCATCTAGTTGTCACTTGTCCAGTAAGATTATGAGGAATTTGGGGATGCGTGAGTTCTTTATATTTGGTTCATCAGAATTAGCATTCTGACTTTCAGATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTGGTGAGTCCTTTTTTTACTCAGATTCGAAATGTCCGTGGTTACAAGTTCAATTGGTATGTGCTAAAATACACTAGTCTCAATTACTTGCCATATGGACTCAAGCTTGTGTTTTTCTGATATAGTTAGCAATCGGGCCTCGTTTATGTAACAGACCTTCAGTGTAAGATCATGCTTGTTGATCAATATGGTAAGAGAGGTGGATCTGACCCTGTGTCTTTGTATTGATTGAAACTGCAGGTGGGATGTGATTTAGTAAGGAGGCCAAACTGAGAAGAAATTAATTTCATTGAACATGTAAAAATGACTAGTGATGAAGTATATTGAAATATGAAAATAATCAGTGGACAATACAAGCAACAGTGTGGCTCAATCCCAACTAGTAGGGTCGTCTATACGAGTCCTCCATATCCATTCTGCTCTATATGGGCTCGGTTTCATTCCAATACTCAATTATTGTCTACTAAGACAAATTAGGGGTGAATATGTGGAAAAAGTTCTAGCTGTGGTATGGCCAAAATTTATAAGCATAAAGCATGAGAGGTTCTCATTAAGTAAACAAAGTTTTTAAGAAAAATATCTAGGGGTTCATAGCTTAAAGGCTTGTGGGTCTGTAAAAGTTCAGATTAGCGGTATCAAAATTTGACATTTGGTTTCTTTGGAGCCAACCTTCGACTATTTCTGCCTTCTAACCTTAACCTATGAGTTAGCAATTTGACTCAATTGCCCGAGTCCCGATGTTTCAAACATATATACAAGTTTGCCATATAGTTTTTTTGTTCCGATGTTGTGCATGTAGATAGCAAAGTGGCTAGCAGCTGCTGATATGTCAATTCCATACAAGAAATTATATCTGGGTTTGGTGCTAAATTTGCAGTGGACAAATTCTATTTATTCAGTATCCTTAAAGTTTTGTAACTAGCTAACATTAGCTTTTGTAGACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATCGCCTACACCACCACTGCAGTCGTCATCACCGGTTGCTTCTTCTGGTAAACTCTACTACAATGCCTTAAAATAACATACAAGTATATGCAATGGGTAGTATAGCAGTGAACCCCTGTTTCA-TGCCAAGGAGTTCAAGATAAGATTGACTTTGTTGTATTGTGTCGTTTTGGTTTCTTGATCTACAAGTGCATTTAGTATGTATACCTTTTCGGTGGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTTTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAGATAACGTATAAAATAACTTCTAATTGACAGTATGAACAGTTAGTTTTCTCCATGCTTTTTATTCAGGGATCCGCTTTTGGTAAATCGGAGCCCTGTTATCAATATGTTTAAGTACGTTAGGAACAACTGATGTAAAATAACCGTGTGGTGCAGCTTCATTCTGATTTTTCCTTCTGATACTGTAAGTTCTGTATCTATTGTGAACTGGCATACCAGACCACTCATACTTGGATAGAGAGGAAATAAATAGGAAACAGACATTTGCTTCACTTTCTTGTTTTCATGGATCTGTACAACTATCCTGGAGAATTTGATGGTTGAAGACCATCGACTCATTTCTATGGGGGGCTCACTCACGTGGTTCTGATTGTTCTCACTGCAGCTCATGAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCGCCATCAGTTAGATGTTCATCTTGTCGTCACATGACAAAAATTTGGGTATGGACTTCATTTCTTCAGAAATACTTGTGCAGTCATGTCAATTAATCATATGACATTTTTTTTTGGGTATCTGCATTTCCCTTTTGAAAAACTTAGCCTGGAGCTGAAATGTCATTTAGTCCTATTATACTTGTTAGCATGCACCACATATTAAGGTGGGATAATATGCGAGATGTCCTTTATGGCCATTTAACATGTTGCGTACAGCACTGGTAGTATACATTTTAAGCTAGAAATTTCAGATTACACGCATGATTTATATGTATATTTGTCTGTGATTTTGGAAAATGAATTGCGTCCTAGATTTCCCTCCTTTTTGTCAATATTGACTTTTGAGACATCTATGCTTCTGAACTTTTCTCCTGCATATCCAGGCCCACAACAGACGACCTCCTCAGTCAGTGCAACAGCCT</genome_strand>
        <mrna_strand>CACCATCA-GGACACAAGGAGCTTCTCTTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACATCACCATCAGGGATACAAGGAGTGCCTCTTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGTAGACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATTAGAATCCGTTCCTATG-AATGGACAT--TCA..........................................................................TCACCACCTACACCACCACCTCAGTCGTCATCATCAG-TTGCTTCT....................................................................................................TCTGAAATGGAGATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCAAATTGAAAAGCAACCAATGTCGCATTTACTACAGATGAAACCTATAGTGCCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCG.................................................................................................................AAATGGGTCAGATGGTATGTGGTGGTTGCCGACAGTTACTTTCTTATCCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAAACCGTCAATCTTGTGCTAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCCCCATCAGTTAGATGTTCCTCTTGTCGCCACATGACAAAAATTGGG.........................................................................................................................................................................................................................................................................................................................................................................................GCCCACAACCGACGACCACCTCAGTCAGTGCAACAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710596" ref_strand="+" ref_description="SGN-E710596 [FA55DF09]">
      <seq>ccataaaaaaatgtcatatgattaattgacatgactgcacaagtatttctgaagaaatgaagtccatacccaaatttttgtcatgtgacgacaagatgaacatctaactgatggcgccccatacggatacatgagcagcactgcacaacccccacacttaacttgtccaacctcatgagctgcagtgagaacaatcagaaccacgtgagtgagccccccatagaaatgagtcgatggtcttcaaccatcaaattctccaggatagttgtacagatccatgaaaacaagaaagtgaagcaaatgtctgtttcctatttatttcctctctatccaagtatgagtggtctggtatgccagttcacaatagatacagaacttacagtatcagaaggaaaaatcagaatgaagctgcaccacacggttattttacatcagttgttcctaacgtacttaaacatattgataacagggctccgatttaccaaaagcggatccctgaataaaaagcatggagaaaactaactgttcatactgtcaattagaagttattttatacgttatcttttcagcaattttggcacgtgtcaagattcaacaaaacttatatatgggggcaacctaccaacctaccaatgataaattgaaatatcatcactagaatatatctgattttgtgacaaggggaaaatgacaaggagtgtaagccccccccttttattataaaagaggaaaccgaaaccttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="+" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="105319" stop="106622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105619" g_stop="106361" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="+" ref_id="SGN-E710596" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105619" e_stop="106361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAAAAATGTCATATGATTAATTGACATGACTGCACAAGTATTTCTGAAGAAATGAAGTCCATACCCAAATTTTTGTCATGTGACGACAAGATGAACATCTAACTGATGGCGCCCCATACGGATACATGAGCAGCACTGCACAACCCCCACACTTAACTTGTCCAACCTCATGAGCTGCAGTGAGAACAATCAGAACCACGTGAGTGAGCCCCCCATAGAAATGAGTCGATGGTCTTCAACCATCAAATTCTCCAGGATAGTTGTACAGATCCATGAAAACAAGAAAGTGAAGCAAATGTCTGTTTCCTATTTATTTCCTCTCTATCCAAGTATGAGTGGTCTGGTATGCCAGTTCACAATAGATACAGAACTTACAGTATCAGAAGGAAAAATCAGAATGAAGCTGCACCACACGGTTATTTTACATCAGTTGTTCCTAACGTACTTAAACATATTGATAACAGGGCTCCGATTTACCAAAAGCGGATCCCTGAATAAAAAGCATGGAGAAAACTAACTGTTCATACTGTCAATTAGAAGTTATTTTATACGTTATCTTTTCAGCAATTTTGGCACGTGTCAAGATTCAACAAAACTTATATATGGGGGCAACCTACCAACCTACCAATGATAAATTGAAATATCATCACTAGAATATATCTGATTTTGTGACAAGGGGAAAATGACAAGGAGTGTAAG--AATCCATTTTAGTATAAAAGAGGAAGCAGAAACCTTCTA</genome_strand>
        <mrna_strand>CCATAAAAAAATGTCATATGATTAATTGACATGACTGCACAAGTATTTCTGAAGAAATGAAGTCCATACCCAAATTTTTGTCATGTGACGACAAGATGAACATCTAACTGATGGCGCCCCATACGGATACATGAGCAGCACTGCACAACCCCCACACTTAACTTGTCCAACCTCATGAGCTGCAGTGAGAACAATCAGAACCACGTGAGTGAGCCCCCCATAGAAATGAGTCGATGGTCTTCAACCATCAAATTCTCCAGGATAGTTGTACAGATCCATGAAAACAAGAAAGTGAAGCAAATGTCTGTTTCCTATTTATTTCCTCTCTATCCAAGTATGAGTGGTCTGGTATGCCAGTTCACAATAGATACAGAACTTACAGTATCAGAAGGAAAAATCAGAATGAAGCTGCACCACACGGTTATTTTACATCAGTTGTTCCTAACGTACTTAAACATATTGATAACAGGGCTCCGATTTACCAAAAGCGGATCCCTGAATAAAAAGCATGGAGAAAACTAACTGTTCATACTGTCAATTAGAAGTTATTTTATACGTTATCTTTTCAGCAATTTTGGCACGTGTCAAGATTCAACAAAACTTATATATGGGGGCAACCTACCAACCTACCAATGATAAATTGAAATATCATCACTAGAATATATCTGATTTTGTGACAAGGGGAAAATGACAAGGAGTGTAAGCCCCCCCCTTTTATTATAAAAGAGGAAACCGAAACCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254399" ref_strand="+" ref_description="SGN-E254399 [cLEG-27-G18]">
      <seq>ggacattttgggggatactgacaaaactattcaccaatcagaaatggatatgggtcgcaaacaagaaggcacaaagaatgaggaggaaaggcccccaagtgaaaagcaaccaatgtcgcatttagtacagatgaaacctatagtacctcaagcctcatcacatgctgcaacagtttcttccggtcagttcttttcacagagcataacagacttttagttcatctcatccaatttagtcagtttatttaggagatgctttgaacaaaatacattatgtaattaagttatgatgcagaactgggtcagatggtatgtggtggttgccaacagttactttcttattcacaaggggctaaattggtgaagtgttcatgctgccagaccgtcaatcttgtgctagaaggtttctgcttcctcttttatactaaaatggattcttacactccttgtcattttccccttgtcacaaaatcagatatattctagtgatgatatttcaatttatcattggtaggttggtaggttgcccccatatataagttntgttgaatcttgacacgtgccaaaattgctgaaaagataacgtataaaataacttctaattgacagtatgaacagttagttttctccatgccttttattcagggatccgctttttggtaaatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="107058" stop="105792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106758" g_stop="106092" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E254399" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106758" e_stop="106092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTTTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAGATAACGTATAAAATAACTTCTAATTGACAGTATGAACAGTTAGTTTTCTCCATGCTTTTTATTCAGGGATCCGC-TTTTGGTAAATCGG</genome_strand>
        <mrna_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTNTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAGATAACGTATAAAATAACTTCTAATTGACAGTATGAACAGTTAGTTTTCTCCATGCCTTTTATTCAGGGATCCGCTTTTTGGTAAATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256158" ref_strand="+" ref_description="SGN-E256158 [cLEG-37-G19]">
      <seq>ggacattttgggggatactgacaaaactattcaccaatcagaaatggatatgggtcgcaaacaagaaggcacaaagaatgaggaggaaaggcccccaagtgaaaagcaaccaatgtcgcatttagtacagatgaaacctatagtacctcaagcctcatcacatgctgcaacagtttcttccggtcagttcttttcacagagcataacagacttttagttcatctcatccaatttagtcagtttatttaggagatgctttgaacaaaatacattatgtaattaagttatgatgcagaactgggtcagatggtatgtggtggttgccaacagttactttcttattcacaaggggctaaattggtgaagtgttcatgctgccagaccgtcaatcttgtgctagaaggtttctgcttcctcttttatactaaaatggattcttacactccttgtcattttccccttgtcacaaaatcagatatattctagtgatgatatttcaatttatcattggtaggttggtaggttgcccccatatataaagttttgttgaatcttgacacgtgccaaaattgctgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="107058" stop="105880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106758" g_stop="106180" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E256158" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106758" e_stop="106180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATAT-AAGTTTTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAG</genome_strand>
        <mrna_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAAGTTTTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254991" ref_strand="+" ref_description="SGN-E254991 [cLEG-33-H12]">
      <seq>ggacattttgggggatactgacaaaactattcaccaatcagaaatggatatgggtcgcaaacaagaaggcacaaagaatgaggaggaaaggcccccaagtgaaaagcaaccaatgtcgcatttagtacagatgaaacctatagtacctcaagcctcatcacatgctgcaacagtttcttccggtcagttcttttcacagagcataacagacttttagttcatctcatccaatttagtcagtttatttaggagatgctttgaacaaaatacattatgtaattaagttatgatgcagaactgggtcagatggtatgtggtggttgccaacagttactttcttattcacaaggggctaaattggntgaagtgttcattgcttgcccgagaccgtcaatcttgtgctagaaggtttctgcttcctcttttatactaaaatggattcttacactccttgtcattttccccttgtcacaaaatcagatatattctagtgatgatatttcaatttatcattggtaggttggtaggttgcccccatatataagttttggtgaatctttgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="107058" stop="105900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106758" g_stop="106200" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E254991" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106758" e_stop="106200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGG-TGAAGTGTTCA-TGC-TG-CC-AGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTTTGTTGAATC-TTGACAC</genome_strand>
        <mrna_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGNTGAAGTGTTCATTGCTTGCCCGAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTTTGGTGAATCTTTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375546" ref_strand="+" ref_description="SGN-E375546 [TUS-34-F18]">
      <seq>ggacattttgggggatactgacaaaactattcaccaatcagaaatggatatgggtcgcaaacaagaaggcacaaagaatgaggaggaaaggcccccaagtgaaaagcaaccaatgtcgcatttagtacagatgaaacctatagtacctcaagcctcatcacatgctgcaacagtttcttccggtcagttcttttcacagagcataacagacttttagttcatctcatccaatttagtcagtttatttaggagatgctttgaacaaaatacattatgtaattaagttatgatgcagaactgggtcagatggtatgtggtggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="107058" stop="106135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106758" g_stop="106435" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E375546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106758" e_stop="106435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGC</genome_strand>
        <mrna_strand>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729844" ref_strand="+" ref_description="SGN-E729844 [LA22BB08]">
      <seq>tgtaagagcaaaaaaaaaaaatggaaaaaaagttgacccacatcgaaaatcaccaattaaatgatgatgaaaaaaaaaatgagggtcccccgcctggtttcaactctttagctgtaccatcgcaaaacaccaatgtcttcataaatgaaaatgatgatgaaggaccccctccaggttggccatcaattcctcagcaacacaacctccaaactactgatgtaaaaatggggagcaaaaaacacaaatcggaaaatgatgaagatggtccgccacctggggggaacactgtaatctcacaaaaaaaatcgccattttcaccgccaaccctaaaagcagttatttgtgatatagaaatggaaaaaaaagaagaaatctttaaaaatgaaaataatggcccaccgccaatatggcagttgacccctaaactgccagcgctacaaacatctacaccaccatcttggacacaaggagcttctcttgaaaatataaaaatggaaaaaaaagaggaagccgttgaaaatgaaaataatggtccaccgccaggatggcaattgacccctcaactactgcctctacagacttctacaccaccatcagggatacaaggagcccctcttgctgacgttgaaatggcaagcaaccaggactgtgatgttgaaaaggaaggacatccactgggatcgcctacaccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="111038" stop="106659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110738" g_stop="110530" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110529" i_stop="109998" i_length="532">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109997" g_stop="109862" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="345" r_length="136" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109861" i_stop="108842" i_length="1020">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108841" g_stop="108704" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="483" r_length="138" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108108" g_stop="107971" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="621" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107970" i_stop="107033" i_length="938">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107032" g_stop="106959" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="695" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E729844" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110738" e_stop="110530"/>
          <exon e_start="109997" e_stop="109862"/>
          <exon e_start="108841" e_stop="108704"/>
          <exon e_start="108108" e_stop="107971"/>
          <exon e_start="107032" e_stop="106959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGAGCAAAAAAAAAAAATGGAAGAAAAGTTGAGCCACATCGAAAATCAGCAATTAGATGATGATGAAGAAGAAGATGAGGGTCCACCGCCTGGTTTCGACTCTTTAGCTGTACCATCGCAAAACACCAATGTCGTCATAGATGAAGATGATGATGAAGGACCACCTCCAGGTTGGCCATCAATTCCTCAGCAACACAACCTCCAGGTGAGATTAATCATAAAACACTAAAATGGGTGTCAATTTAATTTTGTTTTTTCTCTTGAGAGTTACTTGTTTTGGGTTGATGAAATTCATCTTTAGAACTGTTCCCTTTAAGTTAATGTATGATTGATGCATGTAGAGAAGTACATTCATCTGTCAAAAGATGGGAAATTAGTGAAAAATTGAAAATCTTGATGCCATATGAGTACTTGTCAATCATGAAAATCATGAAAAGAACATTAAGATTTTCCTAAAAGTTATGTGATTAATTTTGTGGGAATTTTATTTGAAGACTCTATATAGTTGAACTTGATCTTTATTGGCTTTCATGGATTACCTGTTTTGTGCTGGTGAATTTGATTGCTCTCAAGAGTTGGAACTTTCATGAATTTGAGGCGATAGCAGTATATATAACTATCATTAAAACATTGAAAGGGAAAAAAGAAGAAGAGGAAATAGTTAATGAATAAGTATTTTGCGTAGTGAAAACAGAACTATTAGATTCTACATATACACAAAGGTAACTTGTGAACAGACTACTGATGTAGAGATGGGGAGCAAAGAACACAAATCGGAAGATGATGAAGATGGTCCGCCACCTGGGTGGAACACTGTAATCTCACAGAAAAAATCGCCATCTTCACCGCCAACCCTAGAAGCAGTTATTTGTGGTAAGTCGTTAACTTTACTGTTAAATTACTTTCTTCCCTGCCCCCTCTCTTGCTAGCTCCCTCTCTTTTCTCCCTTGCACACAAACAACTTAGGTAAAAGCATTAGAATTGCTTTTAAATCGAATTGTCAGCTCCACTAGATTAATGCCTCTATTATTTTCTTGGTAAACAAATCTGTAAAAGATAGTGGCCGGCCTTCTTTCAGATCTATGCTAGATTGGTTCTTGAAACTTAACTCTTCAAATTACGGGTAGATGTAATTTTGGAAGGCAATGAACATGAACCATGTGGAAACATTAAGACTGTTGGTGATGCCTTTTTACAATTTTCTTCTTTTCTTTTGTTGCATCTTTTAAAGAGATAATCATTTTGAAATGCTTAACTTGAGCCGAGAGTCTATCTGAAGTAACCTCTCCATCTCCTAAGGTTGGTTAAAGGTCTTTGTGACATCACCCTCCCTAGACCCCACTTCTGGGATTACACTGCGTATGTTGTTGTTGTTTTAAAGAGATAATCACGTGGGACCACTATTTGGTTCTTGTAACTTCATTCTTACTGACCACCATTTTATGTAGCTTCTTTTGCACTTGTGTGCTTGTTGGTTGTCACATTTGCTATGATGTTACTTAACTATATACTGATAGTGTTTTTCCTTGCGTATTTGTTTTCAAAAGAAAATTAGTATAAGCTTACAGCTTACTATAATAGACATTACCAGTTTTTTTTTAAAAAATAGTATAAGCTTACTATAATATACTCTTTTTGGTTCTTATGTAATGTCTCTTAAAGGTTTGCAATTCACTAGCTTATTCTTGCCAAACAATTGATTTAGCCAATTAGAAGTATTACTATGCAGGGCTTATGGTCCCACATCAGTATCTTATGTATTTAGGATGCTCTTATATGAATGAGCTTAGATGACTTTTGCATCTAGTTGTTGAGCAAGATTATGAGGAACTTGGGGATGGATGAGTCTTCTTTATTTGTTTGGTTCATAAGATCTAACATTCTTACTTTCAGATATAGAAATGGAGAAGAAAGAAGAAATCATTAAAAATGAAGATAATGGTCCACCGCCGATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAAACATCTACACCACCATCATGGACACAAGGAGCTTCTCTTGAAGGTGAGTCCTTTCCTATTCACTCAGATGAGTATCCATGTTCACAAGTGCAATTTTTATTTTCTTTGGCTTTGGTATATGCTAAAATACACTAATCTCTTGTACTTGCCATTTGTACATGCATACTTGTGCTTTTCGTTTTCTCTGAATTAGTCCACAACACCAATCGGGCTTCGTTTATGTGACATACCTGTAAGTTCATATTTATTGATCAGTATGGTATGAGAGATGACATGCCCCAATGTCTTTGTGTTGATTGAAACTGCAGGTGGATGTGATTGAAGGTGGGCCAAACTGAGAAGCAATTAATTCCATAGAACATGTCGAAAATACAAGTGATGAATTATTATATCCAAGATAAGAGAATAATCAAGAAATAATAAAAGCTAATATTTGCCAAATGATTAATATAATCAATTGAAAGTAATTCTATGCTAGGCTTGTGATAGCATTAGTATCTTCTGTGTTATGGATGCCCTCATGTGTGGTTAGATGTTGGCTTCATCTAGTTGTCACTTGTCCAGTAAGATTATGAGGAATTTGGGGATGCGTGAGTTCTTTATATTTGGTTCATCAGAATTAGCATTCTGACTTTCAGATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTGGTGAGTCCTTTTTTTACTCAGATTCGAAATGTCCGTGGTTACAAGTTCAATTGGTATGTGCTAAAATACACTAGTCTCAATTACTTGCCATATGGACTCAAGCTTGTGTTTTTCTGATATAGTTAGCAATCGGGCCTCGTTTATGTAACAGACCTTCAGTGTAAGATCATGCTTGTTGATCAATATGGTAAGAGAGGTGGATCTGACCCTGTGTCTTTGTATTGATTGAAACTGCAGGTGGGATGTGATTTAGTAAGGAGGCCAAACTGAGAAGAAATTAATTTCATTGAACATGTAAAAATGACTAGTGATGAAGTATATTGAAATATGAAAATAATCAGTGGACAATACAAGCAACAGTGTGGCTCAATCCCAACTAGTAGGGTCGTCTATACGAGTCCTCCATATCCATTCTGCTCTATATGGGCTCGGTTTCATTCCAATACTCAATTATTGTCTACTAAGACAAATTAGGGGTGAATATGTGGAAAAAGTTCTAGCTGTGGTATGGCCAAAATTTATAAGCATAAAGCATGAGAGGTTCTCATTAAGTAAACAAAGTTTTTAAGAAAAATATCTAGGGGTTCATAGCTTAAAGGCTTGTGGGTCTGTAAAAGTTCAGATTAGCGGTATCAAAATTTGACATTTGGTTTCTTTGGAGCCAACCTTCGACTATTTCTGCCTTCTAACCTTAACCTATGAGTTAGCAATTTGACTCAATTGCCCGAGTCCCGATGTTTCAAACATATATACAAGTTTGCCATATAGTTTTTTTGTTCCGATGTTGTGCATGTAGATAGCAAAGTGGCTAGCAGCTGCTGATATGTCAATTCCATACAAGAAATTATATCTGGGTTTGGTGCTAAATTTGCAGTGGACAAATTCTATTTATTCAGTATCCTTAAAGTTTTGTAACTAGCTAACATTAGCTTTTGTAGACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATCGCCTACACCACCA</genome_strand>
        <mrna_strand>TGTAAGAGCAAAAAAAAAAAATGGAAAAAAAGTTGACCCACATCGAAAATCACCAATTAAATGATGATGAAAAAAAAAATGAGGGTCCCCCGCCTGGTTTCAACTCTTTAGCTGTACCATCGCAAAACACCAATGTCTTCATAAATGAAAATGATGATGAAGGACCCCCTCCAGGTTGGCCATCAATTCCTCAGCAACACAACCTCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTGATGTAAAAATGGGGAGCAAAAAACACAAATCGGAAAATGATGAAGATGGTCCGCCACCTGGGGGGAACACTGTAATCTCACAAAAAAAATCGCCATTTTCACCGCCAACCCTAAAAGCAGTTATTTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATGGAAAAAAAAGAAGAAATCTTTAAAAATGAAAATAATGGCCCACCGCCAATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAAACATCTACACCACCATCTTGGACACAAGGAGCTTCTCTTGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAAAATGGAAAAAAAAGAGGAAGCCGTTGAAAATGAAAATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACTTCTACACCACCATCAGGGATACAAGGAGCCCCTCTTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGAAATGGCAAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATCGCCTACACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485845" ref_strand="+" ref_description="SGN-E485845 [cSTE-19-D22]">
      <seq>aatctccagactactgatgtagagatggggggcaaagagcactaatcggaagaggatgaagatggtccgctacccgggtggaacactgtaatcccacagaaaaaattgccatcttcaccgccaacaatagaagcagttacttgtgatatagaaatggacaagaaagaagaaatccttaaaaatgaagataatggtccaccgccaagatggcagttgacccctaaactaccgccgctacaaacaactacaccaccatcagggacacaaggagcttctcttgaagatatagaaatggagaagaaagaggaagccgttgaacatgaagataatggtccaccgccaggatggcaattgacccctcaactactgcctctacagacatctacatcaccatcagggatacaaggagtgcctcttgctgacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0005F12-Sm7Pi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0005F12.1" temp_strand="-" temp_description="C02SLe0005F12.1  AC226513.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0005F12 sequenced_by:kribb upload_account_name:korea">
        <position start="110300" stop="107671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109997" g_stop="109862" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="145" r_length="136" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109861" i_stop="108842" i_length="1020">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108841" g_stop="108704" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="283" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108108" g_stop="107971" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="421" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107970" i_stop="107820" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.760" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107819" g_stop="107815" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="426" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0005F12.1" gen_strand="-" ref_id="SGN-E485845" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0005F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109997" e_stop="109862"/>
          <exon e_start="108841" e_stop="108704"/>
          <exon e_start="108108" e_stop="107971"/>
          <exon e_start="107819" e_stop="107815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTGATGTAGAGATGGGGAGCAAAGAACACAAATCGGAAGATGATGAAGATGGTCCGCCACCTGGGTGGAACACTGTAATCTCACAGAAAAAATCGCCATCTTCACCGCCAACCCTAGAAGCAGTTATTTGTGGTAAGTCGTTAACTTTACTGTTAAATTACTTTCTTCCCTGCCCCCTCTCTTGCTAGCTCCCTCTCTTTTCTCCCTTGCACACAAACAACTTAGGTAAAAGCATTAGAATTGCTTTTAAATCGAATTGTCAGCTCCACTAGATTAATGCCTCTATTATTTTCTTGGTAAACAAATCTGTAAAAGATAGTGGCCGGCCTTCTTTCAGATCTATGCTAGATTGGTTCTTGAAACTTAACTCTTCAAATTACGGGTAGATGTAATTTTGGAAGGCAATGAACATGAACCATGTGGAAACATTAAGACTGTTGGTGATGCCTTTTTACAATTTTCTTCTTTTCTTTTGTTGCATCTTTTAAAGAGATAATCATTTTGAAATGCTTAACTTGAGCCGAGAGTCTATCTGAAGTAACCTCTCCATCTCCTAAGGTTGGTTAAAGGTCTTTGTGACATCACCCTCCCTAGACCCCACTTCTGGGATTACACTGCGTATGTTGTTGTTGTTTTAAAGAGATAATCACGTGGGACCACTATTTGGTTCTTGTAACTTCATTCTTACTGACCACCATTTTATGTAGCTTCTTTTGCACTTGTGTGCTTGTTGGTTGTCACATTTGCTATGATGTTACTTAACTATATACTGATAGTGTTTTTCCTTGCGTATTTGTTTTCAAAAGAAAATTAGTATAAGCTTACAGCTTACTATAATAGACATTACCAGTTTTTTTTTAAAAAATAGTATAAGCTTACTATAATATACTCTTTTTGGTTCTTATGTAATGTCTCTTAAAGGTTTGCAATTCACTAGCTTATTCTTGCCAAACAATTGATTTAGCCAATTAGAAGTATTACTATGCAGGGCTTATGGTCCCACATCAGTATCTTATGTATTTAGGATGCTCTTATATGAATGAGCTTAGATGACTTTTGCATCTAGTTGTTGAGCAAGATTATGAGGAACTTGGGGATGGATGAGTCTTCTTTATTTGTTTGGTTCATAAGATCTAACATTCTTACTTTCAGATATAGAAATGGAGAAGAAAGAAGAAATCATTAAAAATGAAGATAATGGTCCACCGCCGATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAAACATCTACACCACCATCATGGACACAAGGAGCTTCTCTTGAAGGTGAGTCCTTTCCTATTCACTCAGATGAGTATCCATGTTCACAAGTGCAATTTTTATTTTCTTTGGCTTTGGTATATGCTAAAATACACTAATCTCTTGTACTTGCCATTTGTACATGCATACTTGTGCTTTTCGTTTTCTCTGAATTAGTCCACAACACCAATCGGGCTTCGTTTATGTGACATACCTGTAAGTTCATATTTATTGATCAGTATGGTATGAGAGATGACATGCCCCAATGTCTTTGTGTTGATTGAAACTGCAGGTGGATGTGATTGAAGGTGGGCCAAACTGAGAAGCAATTAATTCCATAGAACATGTCGAAAATACAAGTGATGAATTATTATATCCAAGATAAGAGAATAATCAAGAAATAATAAAAGCTAATATTTGCCAAATGATTAATATAATCAATTGAAAGTAATTCTATGCTAGGCTTGTGATAGCATTAGTATCTTCTGTGTTATGGATGCCCTCATGTGTGGTTAGATGTTGGCTTCATCTAGTTGTCACTTGTCCAGTAAGATTATGAGGAATTTGGGGATGCGTGAGTTCTTTATATTTGGTTCATCAGAATTAGCATTCTGACTTTCAGATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTGGTGAGTCCTTTTTTTACTCAGATTCGAAATGTCCGTGGTTACAAGTTCAATTGGTATGTGCTAAAATACACTAGTCTCAATTACTTGCCATATGGACTCAAGCTTGTGTTTTTCTGATATAGTTAGCAATCGGGCCTCGTTTATGTAACAGACCTT</genome_strand>
        <mrna_strand>ACTACTGATGTAGAGATGGGGGGCAAAGAGCACTAATCGGAAGAGGATGAAGATGGTCCGCTACCCGGGTGGAACACTGTAATCCCACAGAAAAAATTGCCATCTTCACCGCCAACAATAGAAGCAGTTACTTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATGGACAAGAAAGAAGAAATCCTTAAAAATGAAGATAATGGTCCACCGCCAAGATGGCAGTTGACCCCTAAACTACCGCCGCTACAAACAACTACACCACCATCAGGGACACAAGGAGCTTCTCTTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAACATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACATCACCATCAGGGATACAAGGAGTGCCTCTTGCTG.......................................................................................................................................................ACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>220</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="381" PGL_stop="3039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="381" e_stop="516"/>
            <exon e_start="2453" e_stop="3039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.764" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="381" e_stop="516" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.764">
            <gDNA_intron_boundary i_start="517" i_stop="2452" i_length="1936"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2453" e_stop="3039" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="381" stop="516"/>
              <exon start="2453" stop="3015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="382" stop="516"/>
              <exon start="2453" stop="3015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="3039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2616" stop="3031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG : GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAATCTGTAA</gDNA_template>
            <first_frame> M  M  R  I  T  D  N  L  L  T  L  T  L  K  G  K  R  N  V  E  S  A  W  K  *  T  A  K  L  S  F  P  N  A  I  T  P  C  V  *  N  A  I  V  N   : G  V  Q  G  H  N  P  A  L  F  A  A  I  A  L  K  G  L  T  P  V  I  C  G  Y  T  W  T  T  K  T  S  W  T  C  Q  *  *  Q  G  R  I  *  G  G  Y  S  C  L  *  I  S  Y  P  *  S  C  Q  I  M  F  L  I  T  M  I  L  I  *  G  R  *  S  M  L  P  L  G  D  *  I  I  L  K  I  K  *  L  V  S  L  D  L  E  M  Q  V  D  Y  F  I  T  F  P  D  L  E  E  P  D  R  V  I  V  V  Q  G  L  K  L  S  *  I  R  L  A  K  K  K  W  S  F  L  I  A  S  P  N  L  Y  M  P  V  Q  F  Q  F  Y  F  L  K  T  Q  L  L  F  V  F  *  S  S  S  M  P  *  I  P  A  F  E  L  S  Q  V  Q  S  C  M  V  A  I  Y  K  N  V  *  Y  M  M  Y  L  V  S  N  L  * </first_frame>
            <second_frame>  *  *  G  L  Q  T  I  F  *  L  *  H  *  K  G  R  G  M  W  N  L  H  G  N  E  Q  Q  N  C  P  S  Q  M  Q  S  R  P  V  F  E  M  L  S  *  M  :  A  F  K  V  T  I  L  P  F  L  P  R  *  P  *  K  G  *  L  Q  *  S  V  G  I  H  G  Q  Q  R  H  R  G  H  V  N  D  N  K  G  E  S  E  A  A  I  H  V  Y  R  *  A  T  L  D  R  A  R  *  C  F  *  S  L  *  Y  S  Y  K  V  D  D  Q  C  F  H  W  G  I  E  S  Y  *  R  *  S  N  W  S  R  *  I  *  K  C  R  W  I  T  L  S  P  F  L  I  *  K  N  P  T  E  S  L  W  C  R  G  *  S  *  V  R  *  D  *  P  K  K  N  G  A  F  *  L  H  L  L  I  C  T  C  L  Y  S  S  S  F  T  S  *  K  H  N  C  C  L  F  S  D  L  Q  V  C  H  E  Y  Q  H  L  S  F  L  K  C  R  V  V  W  L  L  F  I  R  M  Y  N  I  *  C  I  *  F  P  I  C   </second_frame>
            <third_frame>   D  E  D  Y  R  Q  S  S  D  S  D  I  E  R  E  E  E  C  G  I  C  M  E  M  N  S  K  I  V  L  P  K  C  N  H  A  L  C  L  K  C  Y  R  E  W :   R  S  R  S  Q  S  C  P  F  C  R  D  S  L  K  R  V  N  S  S  D  L  W  V  Y  M  D  N  K  D  I  V  D  M  S  M  I  T  R  E  N  L  R  R  L  F  M  F  I  D  K  L  P  L  I  V  P  D  N  V  F  D  H  Y  D  T  H  I  R  *  M  I  N  A  S  I  G  G  L  N  H  T  K  D  K  V  I  G  L  A  R  F  R  N  A  G  G  L  L  Y  H  L  S  *  F  R  R  T  R  P  S  H  C  G  A  G  V  E  A  K  L  D  K  I  S  Q  K  K  M  E  L  F  N  C  I  S  *  F  V  H  A  C  T  V  P  V  L  L  L  E  N  T  I  V  V  C  F  L  I  F  K  Y  A  M  N  T  S  I  *  A  F  S  S  A  E  L  Y  G  C  Y  L  *  E  C  I  I  Y  D  V  F  S  F  Q  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="383" stop="516"/>
                    <exon start="2453" stop="2663"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEDYRQSSDSDIEREEECGICMEMNSKIVLPKCNHALCLKCYREWRSRSQSCPFCRDSLKRVNSSDLWVYMDNKDIVDMSMITRENLRRLFMFIDKLPLIVPDNVFDHYDTHIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4996" PGL_stop="3041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4996" e_stop="4606"/>
            <exon e_start="4513" e_stop="4414"/>
            <exon e_start="4297" e_stop="4217"/>
            <exon e_start="3871" e_stop="3767"/>
            <exon e_start="3675" e_stop="3139"/>
            <exon e_start="3051" e_stop="3041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.885"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.354" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.619" e_score="0.983"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="4996" e_stop="4606" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4605" i_stop="4514" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4513" e_stop="4414" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4413" i_stop="4298" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4297" e_stop="4217" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="4216" i_stop="3872" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3871" e_stop="3767" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.354">
            <gDNA_intron_boundary i_start="3766" i_stop="3676" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="3675" e_stop="3139" e_length="537"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.619">
            <gDNA_intron_boundary i_start="3138" i_stop="3052" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="0.727">
            <gDNA_exon_boundary e_start="3051" e_stop="3041" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4996" stop="4606"/>
              <exon start="4513" stop="4414"/>
              <exon start="4297" stop="4217"/>
              <exon start="3871" stop="3767"/>
              <exon start="3675" stop="3647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4846" stop="4606"/>
              <exon start="4513" stop="4414"/>
              <exon start="4297" stop="4217"/>
              <exon start="3871" stop="3767"/>
              <exon start="3675" stop="3465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4845" stop="4606"/>
              <exon start="4513" stop="4414"/>
              <exon start="4297" stop="4217"/>
              <exon start="3871" stop="3767"/>
              <exon start="3675" stop="3493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4845" stop="4606"/>
              <exon start="4513" stop="4466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4788" stop="4606"/>
              <exon start="4513" stop="4414"/>
              <exon start="4297" stop="4217"/>
              <exon start="3871" stop="3767"/>
              <exon start="3675" stop="3616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4256" stop="4217"/>
              <exon start="3871" stop="3767"/>
              <exon start="3675" stop="3139"/>
              <exon start="3051" stop="3041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCTGAGCCTATCTGGGGAAATTTTTGCATATCTAGGCATGTCACCATCACTATTATTTCTTTTAAAAAAATCAACAATCTAAACAGTTATAAATCACATCAATATGCTTTCTAATGAACTCTTCCAAGCACCCTTAAAAACATAACAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG : GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT : TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG : GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG : GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTCTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTCTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTCTTTGGACTTCTTCATATATTAAACTCTCCTAATGAAA : AAAAAGGGAAA</gDNA_template>
            <first_frame> F  L  L  S  L  S  G  E  I  F  A  Y  L  G  M  S  P  S  L  L  F  L  L  K  K  S  T  I  *  T  V  I  N  H  I  N  M  L  S  N  E  L  F  Q  A  P  L  K  T  *  Q  Q  F  T  *  Q  V  L  F  Y  F  P  S  *  V  N  E  T  A  P  V  *  N  S  R  W  *  N  L  *  R  V  T  C  D  Y  P  S  R  S  Q  T  *  Q  *  D  L  W  A  L  Q  C  S  S  M  V  Y  G  *  S  E  F  G  S  A  M  L  P  T  H  P  H  P  L  I  M  L  N  F  L   : G  L  S  M  H  F  L  V  L  A  L  L  C  V  Q  S  L  S  L  V  M  L  Q  Q  A  L  P  I  P  I  A  S  H  F :   I  C  S  S  Y  L  C  F  F  *  Q  R  L  Q  L  Q  L  M  F  S  *  T  L  I  G  R  R :   I  C  L  K  I  H  Q  E  G  L  M  I  S  R  I  L  W  T  R  I  A  M  S  A  N  G  L  P  C  F  V  F  *  H  R :   D  V  V  S  Y  W  L  Q  F  *  E  L  L  G  K  L  R  K  I  V  M  S  M  K  V  N  M  Q  N  H  Q  L  H  F  F  A  L  R  N  C  L  Q  I  L  C  I  H  M  L  L  V  N  Q  F  I  L  N  H  I  L  P  T  R  M  F  E  F  W  K  T  I  G  L  I  P  L  *  N  Y  E  I  L  K  P  L  F  L  A  Y  Y  V  I  E  V  C  R  S  *  S  E  *  S  Y  P  L  W  K  N  M  L  C  S  F  S  N  C  L  R  M  S  F  V  N  Q  K  Q  M  R  P  F  Y  V  *  L  R  L  *  V  L  Q  L  L  C  F  *  V  V  S  F  L  F  I  T  M  N  N  D  I  T  L  F  M  H  V  E  L  L  W  T  S  S  Y  I  K  L  S  *  *  K :   K  R  E  </first_frame>
            <second_frame>  F  F  *  A  Y  L  G  K  F  L  H  I  *  A  C  H  H  H  Y  Y  F  F  *  K  N  Q  Q  S  K  Q  L  *  I  T  S  I  C  F  L  M  N  S  S  K  H  P  *  K  H  N  N  N  L  P  S  K  C  S  S  I  S  P  P  K  *  M  K  Q  L  L  F  K  I  Q  D  G  K  T  C  K  E  L  P  A  I  I  P  Q  D  H  K  H  N  N  R  I  Y  G  H  C  N  A  H  L  W  C  M  D  D  Q  S  L  A  A  R  C  C  Q  L  T  L  I  P  *  L  C  S  I  S  L  :  V  Y  P  C  I  S  W  C  W  H  C  F  V  C  N  H  F  P  W  S  C  C  S  K  H  C  Q  F  L  L  P  L  I   : L  Y  V  L  H  I  C  A  S  F  S  R  D  C  N  Y  S  *  C  F  L  E  L  *  L  G  E   : G  F  A  *  R  S  I  R  K  V  *  *  F  Q  G  F  C  G  L  E  *  R  C  L  P  M  D  Y  P  A  L  C  S  N  T   : G  M  L  Y  L  I  G  Y  N  S  K  N  S  W  A  S  *  G  K  *  S  *  V  *  R  *  I  C  R  T  I  S  S  T  S  S  P  S  A  T  A  S  K  S  S  V  S  I  C  Y  W  *  T  S  S  Y  *  T  T  F  C  L  Q  E  C  L  S  F  G  R  Q  L  V  *  S  L  C  K  T  M  K  S  *  N  L  S  F  W  L  I  M  L  L  K  S  A  E  V  E  V  N  E  V  I  L  Y  G  K  I  C  Y  V  A  S  P  I  A  *  E  *  A  L  L  I  R  N  R  *  D  H  F  M  Y  N  *  D  C  E  F  C  N  F  Y  V  F  E  W  Y  H  F  C  L  L  Q  *  T  M  I  L  H  C  L  C  M  L  N  F  F  G  L  L  H  I  L  N  S  P  N  E   : K  K  G  K </second_frame>
            <third_frame>   S  S  E  P  I  W  G  N  F  C  I  S  R  H  V  T  I  T  I  I  S  F  K  K  I  N  N  L  N  S  Y  K  S  H  Q  Y  A  F  *  *  T  L  P  S  T  L  K  N  I  T  T  I  Y  L  A  S  A  L  L  F  P  L  L  S  E  *  N  S  S  C  L  K  F  K  M  V  K  L  V  K  S  Y  L  R  L  S  L  K  I  T  N  I  T  I  G  F  M  G  I  A  M  L  I  Y  G  V  W  M  I  R  V  W  Q  R  D  A  A  N  S  P  S  S  P  D  Y  A  Q  F  P  W :   F  I  H  A  F  L  G  V  G  T  A  L  C  A  I  T  F  L  G  H  V  A  A  S  T  A  N  S  Y  C  L  S  F  :  Y  M  F  F  I  F  V  L  L  L  A  E  I  A  I  T  A  D  V  F  L  N  S  D  W  E  K  :  D  L  P  E  D  P  S  G  R  F  D  D  F  K  D  F  V  D  S  N  S  D  V  C  Q  W  I  T  L  L  C  V  L  T  Q  :  G  C  C  I  L  L  A  T  I  L  R  T  L  G  Q  V  K  E  N  S  H  E  Y  E  G  E  Y  A  E  P  S  A  P  L  L  R  P  P  Q  L  P  P  N  P  L  Y  P  Y  V  I  G  E  P  V  H  I  E  P  H  S  A  Y  K  N  V  *  V  L  E  D  N  W  F  D  P  F  V  K  L  *  N  L  E  T  S  L  F  G  L  L  C  Y  *  S  L  Q  K  L  K  *  M  K  L  S  F  M  E  K  Y  A  M  *  L  L  Q  L  L  K  N  E  L  C  *  S  E  T  D  E  T  I  L  C  I  I  K  I  V  S  F  A  T  F  M  F  L  S  G  I  I  F  V  Y  Y  N  E  Q  *  Y  Y  I  V  Y  A  C  *  T  S  L  D  F  F  I  Y  *  T  L  L  M  K  :  K  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4796" stop="4606"/>
                    <exon start="4513" stop="4414"/>
                    <exon start="4297" stop="4217"/>
                    <exon start="3871" stop="3767"/>
                    <exon start="3675" stop="3478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSCLKFKMVKLVKSYLRLSLKITNITIGFMGIAMLIYGVWMIRVWQRDAANSPSSPDYAQFPWFIHAFLGVGTALCAITFLGHVAASTANSYCLSFYMFFIFVLLLAEIAITADVFLNSDWEKDLPEDPSGRFDDFKDFVDSNSDVCQWITLLCVLTQGCCILLATILRTLGQVKENSHEYEGEYAEPSAPLLRPPQLPPNPLYPYVIGEPVHIEPHSAYKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11915" PGL_stop="5297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11915" e_stop="11707"/>
            <exon e_start="11234" e_stop="11067"/>
            <exon e_start="10400" e_stop="10332"/>
            <exon e_start="9763" e_stop="9670"/>
            <exon e_start="9501" e_stop="9401"/>
            <exon e_start="9269" e_stop="9221"/>
            <exon e_start="9142" e_stop="9083"/>
            <exon e_start="8406" e_stop="8338"/>
            <exon e_start="8026" e_stop="7943"/>
            <exon e_start="7847" e_stop="7764"/>
            <exon e_start="7424" e_stop="7339"/>
            <exon e_start="6990" e_stop="6900"/>
            <exon e_start="6144" e_stop="6064"/>
            <exon e_start="5812" e_stop="5738"/>
            <exon e_start="5642" e_stop="5297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.434" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11915" e_stop="11707" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.933">
            <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11234" e_stop="11067" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.968">
            <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10400" e_stop="10332" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9763" e_stop="9670" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.802">
            <gDNA_intron_boundary i_start="9669" i_stop="9502" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9501" e_stop="9401" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.833">
            <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9269" e_stop="9221" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9142" e_stop="9083" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9082" i_stop="8407" i_length="676"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8406" e_stop="8338" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8337" i_stop="8027" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="8026" e_stop="7943" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.434" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7847" e_stop="7764" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7424" e_stop="7339" e_length="86"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="6990" e_stop="6900" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="6144" e_stop="6064" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.704" acc_prob="0.966">
            <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="5812" e_stop="5738" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5737" i_stop="5643" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="0.997">
            <gDNA_exon_boundary e_start="5642" e_stop="5297" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11915" stop="11707"/>
              <exon start="11234" stop="11067"/>
              <exon start="10400" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9501" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11914" stop="11707"/>
              <exon start="11234" stop="11067"/>
              <exon start="10400" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9501" stop="9494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11911" stop="11707"/>
              <exon start="11234" stop="11067"/>
              <exon start="10400" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9501" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9083"/>
              <exon start="8406" stop="8338"/>
              <exon start="8026" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10360" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9501" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9083"/>
              <exon start="8406" stop="8338"/>
              <exon start="8026" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9498" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9083"/>
              <exon start="8406" stop="8361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8396" stop="8338"/>
              <exon start="8026" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7985" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG : ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG : GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG : TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG : TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG : AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG : CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG : GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG : GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG : GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG : GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG : GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG : ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG : ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA : GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAGA</gDNA_template>
            <first_frame> Q  K  L  G  E  N  H  H  H  S  T  T  A  K  T  L  D  *  E  I  E  V  L  K  T  F  I  *  S  I  T  T  M  P  Q  V  K  I  V  A  R  N  F  M  D  M  V  A  S  L  P  V  M  K  L  D  M  L  Y  D  N  S  F  I  C  E  A  I  L  R :   S  L  P  P  L  A  K  K  Y  V  L  Q  M  L  Y  I  D  I  P  I  T  A  K  S  M  E  E  W  V  L  P  D  G  F  S  K  H  K  V  A  I  D  R  L  I  Q  L  R  V  M  T  E  T  F  D  R :   K  K  E  A  M  Y  Q  L  N  P  K  F  Q  F  N  L  Q  K  H  I  V  Y  G :   G  V  L  P  R  E  P  M  P  S  N  I  T  V  R  L  P  S  L  E  E  L  E  A  Y  A  V  E  Q  W  E  :  C  F  L  L  N  L  I  S  S  S  E  A  G  K  T  T  N  I  S  S  S  M  M  K  I  F  Q  R  G  L  L  S  Q  R :   D  D  R  E  P  P  R  L  T  E  S  G  F  Q  F  L  :  L  M  D  T  N  A  Q  L  W  Y  I  I  R  E  Y  I  T  N  A  E  :  E  R  G  V  D  S  A  D  L  I  A  F  L  L  E  L  S  F  H  V  T  G  K  :  A  Y  N  T  N  T  I  T  D  L  Q  R  S  I  I  K  D  L  S  D  L  G  L  V  K  L  Q  Q  :  G  R  K  E  S  W  F  I  P  T  K  L  A  T  N  L  S  I  S  L  A  D  T  T  T  R  K  Q  :  G  F  I  V  I  E  T  N  F  R  L  Y  A  Y  S  T  S  K  L  H  C  E  I  L  R  L  F  A  R :   V  E  Y  Q  L  P  N  L  I  V  G  A  I  N  K  E  S  L  Y  K  A  F  Q  N  G  I  T  S  E  Q  :  I  V  S  F  L  Q  Q  N  A  H  P  R  V  A  E  R  I  P  S  V  P  E  N  V  T  D  Q  :  I  R  L  W  E  S  D  L  N  R  V  E  M  T  P  A  H  F  Y  D  E  F  P  S  K  :  D  V  F  E  A  A  C  D  F  A  R  E  Y  G  G  L  L  W  E  D  S  K  R  M  R  L  V  V  K  A  D  I  L  A  E  M  K  E  F  L  R  R  Q  K  Q  *  L  F  F  A  Y  C  L  H  L  N  E  G  F  H  Q  L  C  P  S  I  Y  L  F  P  T  *  L  V  H  E  F  C  C  G  C  I  V  F  H  C  A  S  I  S  F  F  R  H  L  V  M  L  Y  *  *  W  D  Y  K  S  S  S  K  L  L  I  A  *  K  </first_frame>
            <second_frame>  R  N  *  G  R  I  I  I  I  Q  Q  Q  L  K  P  *  I  E  K  L  K  Y  *  K  P  L  F  D  L  *  Q  Q  C  R  K  *  R  S  S  P  G  I  S  W  T  W  W  L  H  C  L  S  *  N  S  T  C  F  T  T  I  P  L  S  V  K  P  F  L   : D  R  Y  L  P  *  R  R  S  M  C  C  K  C  C  I  *  T  Y  Q  L  Q  P  S  R  W  R  S  G  C  F  Q  M  D  S  Q  S  I  K  L  P  L  I  D  *  Y  S  *  E  *  *  Q  K  H  L  T   : G  K  R  K  P  C  I  N  *  T  Q  N  F  N  L  I  F  R  S  I  *  S  M   : V  E  S  Y  Q  G  N  Q  C  L  L  I  S  L  *  G  F  L  A  W  R  S  *  R  H  M  L  S  N  N  G  S :   A  F  C  *  T  L  *  A  P  V  K  L  E  R  P  Q  T  *  A  L  R  *  *  K  S  S  S  V  D  F  *  V  R   : E  T  I  E  N  L  Q  G  *  L  K  V  G  S  N  S  C :   *  W  T  Q  M  H  S  F  G  T  S  S  G  S  T  *  Q  M  L  R :   S  E  E  W  I  Q  Q  I  L  L  H  F  F  W  S  *  A  F  M  L  L  A  R :   H  T  I  Q  T  Q  *  L  I  S  R  E  V  *  L  R  T  F  Q  I  W  D  W  S  S  C  S  R :   E  G  K  R  V  G  L  F  R  P  N  W  R  P  T  C  Q  L  A  *  R  I  Q  L  L  G  N  R :   V  L  S  L  L  K  Q  T  S  D  C  M  H  I  Q  H  Q  N  C  T  V  R  S  Y  A  F  L  Q   : G  W  N  T  S  F  Q  I  S  L  L  V  L  L  I  K  R  V  Y  I  K  L  F  K  T  A  L  L  L  S  R :   *  F  L  S  F  S  R  M  H  I  L  G  L  P  R  E  Y  H  L  C  R  R  M  L  L  I  R :   L  D  C  G  N  L  I  *  I  G  L  R  *  R  Q  P  T  S  T  M  N  S  L  L  K :   M  S  L  R  L  P  V  I  L  P  E  N  M  E  D  Y  C  G  R  T  L  S  A  C  V  S  L  L  K  L  I  F  *  P  R  *  R  N  F  F  V  V  K  S  N  N  S  S  L  H  T  V  F  I  *  M  K  G  F  I  S  Y  V  H  L  Y  I  Y  S  Q  L  N  L  Y  M  N  F  V  V  G  V  L  Y  F  I  V  L  R  F  P  S  F  D  T  L  *  C  C  T  N  N  G  T  T  N  H  R  Q  N  Y  *  *  P  K  R </second_frame>
            <third_frame>   E  I  R  G  E  S  S  S  F  N  N  S  *  N  P  R  L  R  N  *  S  I  E  N  L  Y  L  I  Y  N  N  N  A  A  S  E  D  R  R  Q  E  F  H  G  H  G  G  F  I  A  C  H  E  T  R  H  A  L  R  Q  F  L  Y  L  *  S  H  S  *  :  I  V  T  S  L  S  E  E  V  C  A  A  N  V  V  Y  R  H  T  N  Y  S  Q  V  D  G  G  V  G  A  S  R  W  I  L  K  A  *  S  C  H  *  *  I  D  T  A  E  S  N  D  R  N  I  *  Q  :  E  K  G  S  H  V  S  T  K  P  K  I  S  I  *  S  S  E  A  Y  S  L  W  :  W  S  L  T  K  G  T  N  A  F  *  Y  H  C  E  A  S  *  L  G  G  V  R  G  I  C  C  R  T  M  G   : V  L  S  A  E  P  Y  K  L  Q  *  S  W  K  D  H  K  H  K  L  F  D  D  E  N  L  P  A  W  T  F  K  S  E  :  R  R  *  R  T  S  K  V  D  *  K  W  V  P  I  L   : A  N  G  H  K  C  T  A  L  V  H  H  Q  G  V  H  N  K  C  *   : G  A  R  S  G  F  S  R  S  Y  C  I  S  F  G  A  K  L  S  C  Y  W  Q   : G  I  Q  Y  K  H  N  N  *  S  P  E  K  Y  N  *  G  P  F  R  F  G  I  G  Q  A  A  A   : G  K  E  R  E  L  V  Y  S  D  Q  T  G  D  Q  P  V  N  *  L  S  G  Y  N  Y  *  E  T   : G  F  Y  R  Y  *  N  K  L  Q  T  V  C  I  F  N  I  K  I  A  L  *  D  P  T  P  F  C  K  :  G  G  I  P  A  S  K  S  H  C  W  C  Y  *  *  R  E  F  I  *  S  F  S  K  R  H  Y  F  *  A   : D  S  F  F  P  S  A  E  C  T  S  *  G  C  R  E  N  T  I  C  A  G  E  C  Y  *  S   : D  *  I  V  G  I  *  S  E  S  G  *  D  D  A  S  P  L  L  R  *  I  P  F  *   : R  C  L  *  G  C  L  *  F  C  Q  R  I  W  R  I  T  V  G  G  L  *  A  H  A  S  R  C  *  S  *  Y  F  S  R  D  E  G  I  S  S  S  S  K  A  I  T  L  L  C  I  L  S  S  F  K  *  R  V  S  S  V  M  S  I  Y  I  F  I  P  N  L  T  C  T  *  I  L  L  W  V  Y  C  I  S  L  C  F  D  F  L  L  S  T  P  C  D  V  V  L  I  M  G  L  Q  I  I  V  K  T  I  D  S  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11831" stop="11707"/>
                    <exon start="11234" stop="11067"/>
                    <exon start="10400" stop="10332"/>
                    <exon start="9763" stop="9670"/>
                    <exon start="9501" stop="9401"/>
                    <exon start="9269" stop="9221"/>
                    <exon start="9142" stop="9083"/>
                    <exon start="8406" stop="8338"/>
                    <exon start="8026" stop="7943"/>
                    <exon start="7847" stop="7764"/>
                    <exon start="7424" stop="7339"/>
                    <exon start="6990" stop="6900"/>
                    <exon start="6144" stop="6064"/>
                    <exon start="5812" stop="5738"/>
                    <exon start="5642" stop="5505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTMPQVKIVARNFMDMVASLPVMKLDMLYDNSFICEAILRSLPPLAKKYVLQMLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLPSLEELEAYAVEQWECFLLNLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKEFLRRQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11915" e_stop="11707"/>
            <exon e_start="11234" e_stop="11067"/>
            <exon e_start="10400" e_stop="10332"/>
            <exon e_start="9763" e_stop="9670"/>
            <exon e_start="9553" e_stop="9401"/>
            <exon e_start="9269" e_stop="9221"/>
            <exon e_start="9142" e_stop="9083"/>
            <exon e_start="8406" e_stop="8338"/>
            <exon e_start="8026" e_stop="7943"/>
            <exon e_start="7847" e_stop="7764"/>
            <exon e_start="7424" e_stop="7339"/>
            <exon e_start="6990" e_stop="6900"/>
            <exon e_start="6144" e_stop="6064"/>
            <exon e_start="5812" e_stop="5738"/>
            <exon e_start="5642" e_stop="5297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.933" e_score="0.962"/>
          <exon-intron don_prob="0.989" acc_prob="0.968" e_score="0.994"/>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="0.942"/>
          <exon-intron don_prob="0.964" acc_prob="0.784" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.833" e_score="0.967"/>
          <exon-intron don_prob="0.967" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.434" acc_prob="0.998" e_score="0.952"/>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="11915" e_stop="11707" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.933">
            <gDNA_intron_boundary i_start="11706" i_stop="11235" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="11234" e_stop="11067" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.968">
            <gDNA_intron_boundary i_start="11066" i_stop="10401" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="10400" e_stop="10332" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="10331" i_stop="9764" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="9763" e_stop="9670" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.784">
            <gDNA_intron_boundary i_start="9669" i_stop="9554" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="9553" e_stop="9401" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.833">
            <gDNA_intron_boundary i_start="9400" i_stop="9270" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9269" e_stop="9221" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9220" i_stop="9143" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9142" e_stop="9083" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9082" i_stop="8407" i_length="676"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8406" e_stop="8338" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8337" i_stop="8027" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="0.952">
            <gDNA_exon_boundary e_start="8026" e_stop="7943" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.434" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7942" i_stop="7848" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7847" e_stop="7764" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7763" i_stop="7425" i_length="339"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7424" e_stop="7339" e_length="86"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="7338" i_stop="6991" i_length="348"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="6990" e_stop="6900" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6899" i_stop="6145" i_length="755"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="6144" e_stop="6064" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.704" acc_prob="0.966">
            <gDNA_intron_boundary i_start="6063" i_stop="5813" i_length="251"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="5812" e_stop="5738" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5737" i_stop="5643" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="0.991">
            <gDNA_exon_boundary e_start="5642" e_stop="5297" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11915" stop="11707"/>
              <exon start="11234" stop="11067"/>
              <exon start="10400" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9553" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11915" stop="11707"/>
              <exon start="11234" stop="11067"/>
              <exon start="10400" stop="10332"/>
              <exon start="9763" stop="9670"/>
              <exon start="9553" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9498" stop="9401"/>
              <exon start="9269" stop="9221"/>
              <exon start="9142" stop="9083"/>
              <exon start="8406" stop="8361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8396" stop="8338"/>
              <exon start="8026" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7985" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7943"/>
              <exon start="7847" stop="7764"/>
              <exon start="7424" stop="7339"/>
              <exon start="6990" stop="6900"/>
              <exon start="6144" stop="6064"/>
              <exon start="5812" stop="5738"/>
              <exon start="5642" stop="5415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG : ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG : GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG : TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG : CCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG : AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG : CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG : GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG : GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG : GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG : GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG : GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG : ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG : ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA : GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAGA</gDNA_template>
            <first_frame> Q  K  L  G  E  N  H  H  H  S  T  T  A  K  T  L  D  *  E  I  E  V  L  K  T  F  I  *  S  I  T  T  M  P  Q  V  K  I  V  A  R  N  F  M  D  M  V  A  S  L  P  V  M  K  L  D  M  L  Y  D  N  S  F  I  C  E  A  I  L  R :   S  L  P  P  L  A  K  K  Y  V  L  Q  M  L  Y  I  D  I  P  I  T  A  K  S  M  E  E  W  V  L  P  D  G  F  S  K  H  K  V  A  I  D  R  L  I  Q  L  R  V  M  T  E  T  F  D  R :   K  K  E  A  M  Y  Q  L  N  P  K  F  Q  F  N  L  Q  K  H  I  V  Y  G :   G  V  L  P  R  E  P  M  P  S  N  I  T  V  R  L  P  S  L  E  E  L  E  A  Y  A  V  E  Q  W  E  :  P  E  Y  N  F  G  N  Y  F  Y  D  L  Q  L  S  Q  P  V  L  S  A  E  P  Y  K  L  Q  *  S  W  K  D  H  K  H  K  L  F  D  D  E  N  L  P  A  W  T  F  K  S  E  :  R  R  *  R  T  S  K  V  D  *  K  W  V  P  I  L   : A  N  G  H  K  C  T  A  L  V  H  H  Q  G  V  H  N  K  C  *   : G  A  R  S  G  F  S  R  S  Y  C  I  S  F  G  A  K  L  S  C  Y  W  Q   : G  I  Q  Y  K  H  N  N  *  S  P  E  K  Y  N  *  G  P  F  R  F  G  I  G  Q  A  A  A   : G  K  E  R  E  L  V  Y  S  D  Q  T  G  D  Q  P  V  N  *  L  S  G  Y  N  Y  *  E  T   : G  F  Y  R  Y  *  N  K  L  Q  T  V  C  I  F  N  I  K  I  A  L  *  D  P  T  P  F  C  K  :  G  G  I  P  A  S  K  S  H  C  W  C  Y  *  *  R  E  F  I  *  S  F  S  K  R  H  Y  F  *  A   : D  S  F  F  P  S  A  E  C  T  S  *  G  C  R  E  N  T  I  C  A  G  E  C  Y  *  S   : D  *  I  V  G  I  *  S  E  S  G  *  D  D  A  S  P  L  L  R  *  I  P  F  *   : R  C  L  *  G  C  L  *  F  C  Q  R  I  W  R  I  T  V  G  G  L  *  A  H  A  S  R  C  *  S  *  Y  F  S  R  D  E  G  I  S  S  S  S  K  A  I  T  L  L  C  I  L  S  S  F  K  *  R  V  S  S  V  M  S  I  Y  I  F  I  P  N  L  T  C  T  *  I  L  L  W  V  Y  C  I  S  L  C  F  D  F  L  L  S  T  P  C  D  V  V  L  I  M  G  L  Q  I  I  V  K  T  I  D  S  L  K   </first_frame>
            <second_frame>  R  N  *  G  R  I  I  I  I  Q  Q  Q  L  K  P  *  I  E  K  L  K  Y  *  K  P  L  F  D  L  *  Q  Q  C  R  K  *  R  S  S  P  G  I  S  W  T  W  W  L  H  C  L  S  *  N  S  T  C  F  T  T  I  P  L  S  V  K  P  F  L   : D  R  Y  L  P  *  R  R  S  M  C  C  K  C  C  I  *  T  Y  Q  L  Q  P  S  R  W  R  S  G  C  F  Q  M  D  S  Q  S  I  K  L  P  L  I  D  *  Y  S  *  E  *  *  Q  K  H  L  T   : G  K  R  K  P  C  I  N  *  T  Q  N  F  N  L  I  F  R  S  I  *  S  M   : V  E  S  Y  Q  G  N  Q  C  L  L  I  S  L  *  G  F  L  A  W  R  S  *  R  H  M  L  S  N  N  G  S :   L  N  I  I  L  A  T  I  F  M  T  C  N  C  R  N  Q  C  F  L  L  N  L  I  S  S  S  E  A  G  K  T  T  N  I  S  S  S  M  M  K  I  F  Q  R  G  L  L  S  Q  R :   D  D  R  E  P  P  R  L  T  E  S  G  F  Q  F  L  :  L  M  D  T  N  A  Q  L  W  Y  I  I  R  E  Y  I  T  N  A  E  :  E  R  G  V  D  S  A  D  L  I  A  F  L  L  E  L  S  F  H  V  T  G  K  :  A  Y  N  T  N  T  I  T  D  L  Q  R  S  I  I  K  D  L  S  D  L  G  L  V  K  L  Q  Q  :  G  R  K  E  S  W  F  I  P  T  K  L  A  T  N  L  S  I  S  L  A  D  T  T  T  R  K  Q  :  G  F  I  V  I  E  T  N  F  R  L  Y  A  Y  S  T  S  K  L  H  C  E  I  L  R  L  F  A  R :   V  E  Y  Q  L  P  N  L  I  V  G  A  I  N  K  E  S  L  Y  K  A  F  Q  N  G  I  T  S  E  Q  :  I  V  S  F  L  Q  Q  N  A  H  P  R  V  A  E  R  I  P  S  V  P  E  N  V  T  D  Q  :  I  R  L  W  E  S  D  L  N  R  V  E  M  T  P  A  H  F  Y  D  E  F  P  S  K  :  D  V  F  E  A  A  C  D  F  A  R  E  Y  G  G  L  L  W  E  D  S  K  R  M  R  L  V  V  K  A  D  I  L  A  E  M  K  E  F  L  R  R  Q  K  Q  *  L  F  F  A  Y  C  L  H  L  N  E  G  F  H  Q  L  C  P  S  I  Y  L  F  P  T  *  L  V  H  E  F  C  C  G  C  I  V  F  H  C  A  S  I  S  F  F  R  H  L  V  M  L  Y  *  *  W  D  Y  K  S  S  S  K  L  L  I  A  *  K  </second_frame>
            <third_frame>   E  I  R  G  E  S  S  S  F  N  N  S  *  N  P  R  L  R  N  *  S  I  E  N  L  Y  L  I  Y  N  N  N  A  A  S  E  D  R  R  Q  E  F  H  G  H  G  G  F  I  A  C  H  E  T  R  H  A  L  R  Q  F  L  Y  L  *  S  H  S  *  :  I  V  T  S  L  S  E  E  V  C  A  A  N  V  V  Y  R  H  T  N  Y  S  Q  V  D  G  G  V  G  A  S  R  W  I  L  K  A  *  S  C  H  *  *  I  D  T  A  E  S  N  D  R  N  I  *  Q  :  E  K  G  S  H  V  S  T  K  P  K  I  S  I  *  S  S  E  A  Y  S  L  W  :  W  S  L  T  K  G  T  N  A  F  *  Y  H  C  E  A  S  *  L  G  G  V  R  G  I  C  C  R  T  M  G   : A  *  I  *  F  W  Q  L  F  L  *  L  A  T  V  A  T  S  A  F  C  *  T  L  *  A  P  V  K  L  E  R  P  Q  T  *  A  L  R  *  *  K  S  S  S  V  D  F  *  V  R   : E  T  I  E  N  L  Q  G  *  L  K  V  G  S  N  S  C :   *  W  T  Q  M  H  S  F  G  T  S  S  G  S  T  *  Q  M  L  R :   S  E  E  W  I  Q  Q  I  L  L  H  F  F  W  S  *  A  F  M  L  L  A  R :   H  T  I  Q  T  Q  *  L  I  S  R  E  V  *  L  R  T  F  Q  I  W  D  W  S  S  C  S  R :   E  G  K  R  V  G  L  F  R  P  N  W  R  P  T  C  Q  L  A  *  R  I  Q  L  L  G  N  R :   V  L  S  L  L  K  Q  T  S  D  C  M  H  I  Q  H  Q  N  C  T  V  R  S  Y  A  F  L  Q   : G  W  N  T  S  F  Q  I  S  L  L  V  L  L  I  K  R  V  Y  I  K  L  F  K  T  A  L  L  L  S  R :   *  F  L  S  F  S  R  M  H  I  L  G  L  P  R  E  Y  H  L  C  R  R  M  L  L  I  R :   L  D  C  G  N  L  I  *  I  G  L  R  *  R  Q  P  T  S  T  M  N  S  L  L  K :   M  S  L  R  L  P  V  I  L  P  E  N  M  E  D  Y  C  G  R  T  L  S  A  C  V  S  L  L  K  L  I  F  *  P  R  *  R  N  F  F  V  V  K  S  N  N  S  S  L  H  T  V  F  I  *  M  K  G  F  I  S  Y  V  H  L  Y  I  Y  S  Q  L  N  L  Y  M  N  F  V  V  G  V  L  Y  F  I  V  L  R  F  P  S  F  D  T  L  *  C  C  T  N  N  G  T  T  N  H  R  Q  N  Y  *  *  P  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9695" stop="9670"/>
                    <exon start="9553" stop="9401"/>
                    <exon start="9269" stop="9221"/>
                    <exon start="9142" stop="9083"/>
                    <exon start="8406" stop="8338"/>
                    <exon start="8026" stop="7943"/>
                    <exon start="7847" stop="7764"/>
                    <exon start="7424" stop="7339"/>
                    <exon start="6990" stop="6900"/>
                    <exon start="6144" stop="6064"/>
                    <exon start="5812" stop="5738"/>
                    <exon start="5642" stop="5505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHMLSNNGSLNIILATIFMTCNCRNQCFLLNLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKEFLRRQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17670" PGL_stop="18808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17670" e_stop="18723"/>
            <exon e_start="18797" e_stop="18808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.936" e_score="0.999"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="17670" e_stop="18723" e_length="1054"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="18724" i_stop="18796" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="18797" e_stop="18808" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17670" stop="18229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17691" stop="18407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17695" stop="18581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17695" stop="18213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17701" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17744" stop="17911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18161" stop="18723"/>
              <exon start="18797" stop="18808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGTGCCCTTTCATATTCCACCTACCACAAACTCTATCGTTTGACCTTCTTCCTCCTCACTGCAAACCAAACCCCAATGATTAAATCTTCATCTTCAATCTGCTTTTTACCTGCCACTTCAAATCAACATTCTTGATTTTCATAATCAGATCCAAAATTTCATAATATTTGAATCAAAGACTGAAACTTTATTGTATCAATCTGGTTCCCTTCAAATCAAGATTCTTGATTCCCACAAACATATCAAAGATTCACCATATTTGACTCCAAGACTGAAACTTTCTTGTGTATATATCTTTTCATTGTTGAGAAATTGATGTATATGACTTTGAAGGAAGCATAGTCTGTTCTTTTCAAGATTTGAAGAGTGAAAAAGAGACACAGAATATGGGATCACCATCAGCAGCAGCAGCAGCAGGGGTAAAGGCTAGAGTTTTAGATATTCCACTTCATGGGATTGGTTTTGAGTTTGTAGAAATCACACCCCACAAAATCACTGGTCGTCTTCCTGTGACAGATAAGTGTTGTCAGCCATTTAAGGTGCTGCACGGTGGAGTTTCAGCTTTGATGGCTGAGTCTCTAGCAAGTATGGGAGCACACATGGCTTCTGGTTTTAAGAGAGTGGCTGGAGTTCATCTAAGCATCCATCATCTCAAGAGTGCTCATTTAGGGGACCTTGTGTTTGCTGAGGCTGTGCCAATCAATATTGGCAAAAGTATTCATGTTTGGGAAGTTTGTCTCTGGAAGATTGATCCAGCTAATGAGGAAAAAAAGACTTTGTTAGCATCATCAAGAGTTACTCTTAAGGTCAACATGTCTATACCTGAAAATGCTAAAGATGCTGCTGTGAATCTCAAGAAATATGCTAAGTTATGATCATGTTTAATTGAGTTTGTTTGTAAGCAAAATTGTAGAGAGTAACAAGACAATAATGCAGAGTTATGCAAAACATGTTGTAAACCCCTTTGACATTTTCTGTCCTGACACGTTTTTATGAAAAAGTACCCAAAAAAGAGTGTAATCTACATTATCTGGAGTAGTTACTAATTTCTTT : GCTAAAAGAAGA</gDNA_template>
            <first_frame> R  C  P  F  I  F  H  L  P  Q  T  L  S  F  D  L  L  P  P  H  C  K  P  N  P  N  D  *  I  F  I  F  N  L  L  F  T  C  H  F  K  S  T  F  L  I  F  I  I  R  S  K  I  S  *  Y  L  N  Q  R  L  K  L  Y  C  I  N  L  V  P  F  K  S  R  F  L  I  P  T  N  I  S  K  I  H  H  I  *  L  Q  D  *  N  F  L  V  Y  I  S  F  H  C  *  E  I  D  V  Y  D  F  E  G  S  I  V  C  S  F  Q  D  L  K  S  E  K  E  T  Q  N  M  G  S  P  S  A  A  A  A  A  G  V  K  A  R  V  L  D  I  P  L  H  G  I  G  F  E  F  V  E  I  T  P  H  K  I  T  G  R  L  P  V  T  D  K  C  C  Q  P  F  K  V  L  H  G  G  V  S  A  L  M  A  E  S  L  A  S  M  G  A  H  M  A  S  G  F  K  R  V  A  G  V  H  L  S  I  H  H  L  K  S  A  H  L  G  D  L  V  F  A  E  A  V  P  I  N  I  G  K  S  I  H  V  W  E  V  C  L  W  K  I  D  P  A  N  E  E  K  K  T  L  L  A  S  S  R  V  T  L  K  V  N  M  S  I  P  E  N  A  K  D  A  A  V  N  L  K  K  Y  A  K  L  *  S  C  L  I  E  F  V  C  K  Q  N  C  R  E  *  Q  D  N  N  A  E  L  C  K  T  C  C  K  P  L  *  H  F  L  S  *  H  V  F  M  K  K  Y  P  K  K  S  V  I  Y  I  I  W  S  S  Y  *  F  L   : C  *  K  K  </first_frame>
            <second_frame>  G  A  L  S  Y  S  T  Y  H  K  L  Y  R  L  T  F  F  L  L  T  A  N  Q  T  P  M  I  K  S  S  S  S  I  C  F  L  P  A  T  S  N  Q  H  S  *  F  S  *  S  D  P  K  F  H  N  I  *  I  K  D  *  N  F  I  V  S  I  W  F  P  S  N  Q  D  S  *  F  P  Q  T  Y  Q  R  F  T  I  F  D  S  K  T  E  T  F  L  C  I  Y  L  F  I  V  E  K  L  M  Y  M  T  L  K  E  A  *  S  V  L  F  K  I  *  R  V  K  K  R  H  R  I  W  D  H  H  Q  Q  Q  Q  Q  Q  G  *  R  L  E  F  *  I  F  H  F  M  G  L  V  L  S  L  *  K  S  H  P  T  K  S  L  V  V  F  L  *  Q  I  S  V  V  S  H  L  R  C  C  T  V  E  F  Q  L  *  W  L  S  L  *  Q  V  W  E  H  T  W  L  L  V  L  R  E  W  L  E  F  I  *  A  S  I  I  S  R  V  L  I  *  G  T  L  C  L  L  R  L  C  Q  S  I  L  A  K  V  F  M  F  G  K  F  V  S  G  R  L  I  Q  L  M  R  K  K  R  L  C  *  H  H  Q  E  L  L  L  R  S  T  C  L  Y  L  K  M  L  K  M  L  L  *  I  S  R  N  M  L  S  Y  D  H  V  *  L  S  L  F  V  S  K  I  V  E  S  N  K  T  I  M  Q  S  Y  A  K  H  V  V  N  P  F  D  I  F  C  P  D  T  F  L  *  K  S  T  Q  K  R  V  *  S  T  L  S  G  V  V  T  N  F  F  :  A  K  R  R </second_frame>
            <third_frame>   V  P  F  H  I  P  P  T  T  N  S  I  V  *  P  S  S  S  S  L  Q  T  K  P  Q  *  L  N  L  H  L  Q  S  A  F  Y  L  P  L  Q  I  N  I  L  D  F  H  N  Q  I  Q  N  F  I  I  F  E  S  K  T  E  T  L  L  Y  Q  S  G  S  L  Q  I  K  I  L  D  S  H  K  H  I  K  D  S  P  Y  L  T  P  R  L  K  L  S  C  V  Y  I  F  S  L  L  R  N  *  C  I  *  L  *  R  K  H  S  L  F  F  S  R  F  E  E  *  K  R  D  T  E  Y  G  I  T  I  S  S  S  S  S  R  G  K  G  *  S  F  R  Y  S  T  S  W  D  W  F  *  V  C  R  N  H  T  P  Q  N  H  W  S  S  S  C  D  R  *  V  L  S  A  I  *  G  A  A  R  W  S  F  S  F  D  G  *  V  S  S  K  Y  G  S  T  H  G  F  W  F  *  E  S  G  W  S  S  S  K  H  P  S  S  Q  E  C  S  F  R  G  P  C  V  C  *  G  C  A  N  Q  Y  W  Q  K  Y  S  C  L  G  S  L  S  L  E  D  *  S  S  *  *  G  K  K  D  F  V  S  I  I  K  S  Y  S  *  G  Q  H  V  Y  T  *  K  C  *  R  C  C  C  E  S  Q  E  I  C  *  V  M  I  M  F  N  *  V  C  L  *  A  K  L  *  R  V  T  R  Q  *  C  R  V  M  Q  N  M  L  *  T  P  L  T  F  S  V  L  T  R  F  Y  E  K  V  P  K  K  E  C  N  L  H  Y  L  E  *  L  L  I  S  L :   L  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17979" stop="18545"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIDVYDFEGSIVCSFQDLKSEKETQNMGSPSAAAAAGVKARVLDIPLHGIGFEFVEITPHKITGRLPVTDKCCQPFKVLHGGVSALMAESLASMGAHMASGFKRVAGVHLSIHHLKSAHLGDLVFAEAVPINIGKSIHVWEVCLWKIDPANEEKKTLLASSRVTLKVNMSIPENAKDAAVNLKKYAKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17750" stop="17986"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLHLQSAFYLPLQINILDFHNQIQNFIIFESKTETLLYQSGSLQIKILDSHKHIKDSPYLTPRLKLSCVYIFSLLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25942" PGL_stop="33097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32766" e_stop="33097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25942" e_stop="26082" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29277" e_stop="29362" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.477" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29650" e_stop="29709" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29876" e_stop="30024" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30333" e_stop="30459" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30819" e_stop="30974" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="31068" e_stop="31178" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="31807" e_stop="31917" e_length="111"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="32146" e_stop="32244" e_length="99"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="32520" e_stop="32668" e_length="149"/>
          </exon>
          <intron i_serial="15" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="32766" e_stop="33097" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25942" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25962" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25977" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25978" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25981" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25984" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25987" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25987" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25988" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
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            <referenceDNA id="SGN-E328922" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E342518" strand="+"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407835" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E706513" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E467524" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E333169" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708091" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E361396" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E361859" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701484" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E725171" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363827" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26905" stop="26961"/>
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            <referenceDNA id="SGN-E346083" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26952" stop="26961"/>
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            <referenceDNA id="SGN-E312956" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E482409" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E333271" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E364928" strand="+"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E328196" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E327935" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E408421" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E408671" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E559220" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E559230" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E363993" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E273785" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E698537" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E706511" strand="+"/>
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          <PGS_line>
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              <exon start="31839" stop="31917"/>
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            <referenceDNA id="SGN-E395842" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31858" stop="31917"/>
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            <referenceDNA id="SGN-E711271" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31863" stop="31917"/>
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            <referenceDNA id="SGN-E296199" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32191" stop="32244"/>
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            <referenceDNA id="SGN-E711407" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32668"/>
              <exon start="32766" stop="33066"/>
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            <referenceDNA id="SGN-E225439" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32668"/>
              <exon start="32766" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32606" stop="32668"/>
              <exon start="32766" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32619" stop="32668"/>
              <exon start="32766" stop="33066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAAATCTGATCTGAA</gDNA_template>
            <first_frame> W  K  P  L  M  H  K  R  S  Y  T  K  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  W :   L  E  T  T  T  W  H  D  M  *  M  E  L  I  T  L  S  F  R  S  K  Q  I  F  A  W  I  *  V  V  H  R  L  N  S  S  F  R  R  A  T  G  L  E  C  I  *  S  V  V  R  P  *  L  I  V  I  R  Y  L  T  L  *  K  I  N  M  S  L  *  A  E  S  S  C  C  *  *  S  T  H  *  D  L  N  T  S  S  *  L  Q  I  P  *  E  T  N  I  N  L  I  L  S  F  *  P  N  L  I  *  </first_frame>
            <second_frame>  G  S  H  *  C  T  R  D  H  T  Q  R  R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : G  W  R  R  P  H  G  M  T  C  R  W  N  *  *  H  C  H  S  D  Q  N  K  S  L  H  G  S  K  L  F  I  V  L  T  L  L  L  G  V  Q  Q  G  W  S  V  Y  N  L  L  Y  A  L  S  *  *  S  F  D  I  *  L  C  R  K  *  I  C  H  F  K  L  K  A  L  V  V  D  E  V  H  I  K  T  *  I  H  L  H  S  Y  K  F  H  E  K  L  I  S  T  *  F  C  L  S  S  Q  I  *  S  E </second_frame>
            <third_frame>   E  A  I  N  A  Q  E  I  I  H  K  E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  V  G  D  D  H  M  A  *  H  V  D  G  I  D  N  T  V  I  Q  I  K  T  N  L  C  M  D  L  S  C  S  S  S  *  L  F  F  *  A  C  N  R  A  G  V  Y  I  I  C  C  T  P  L  V  D  S  H  S  I  F  N  S  V  E  N  K  Y  V  T  L  S  *  K  L  L  L  L  M  K  Y  T  L  R  L  E  Y  I  F  I  V  T  N  S  M  R  N  *  Y  Q  L  N  F  V  F  L  A  K  S  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32741" e_stop="33066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.877"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25942" e_stop="26082" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29277" e_stop="29362" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.477" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29650" e_stop="29709" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29876" e_stop="30024" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30333" e_stop="30459" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30819" e_stop="30974" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="31068" e_stop="31178" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="31807" e_stop="31917" e_length="111"/>
          </exon>
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              <exon start="31807" stop="31907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30382" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30941" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32741" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31817" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32741" stop="33041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420510" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31819" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32741" stop="33032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31863" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32741" stop="32991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : TCTTACTGTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTA</gDNA_template>
            <first_frame> W  K  P  L  M  H  K  R  S  Y  T  K  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  C :   L  T  V  P  C  F  A  *  V  G  D  D  H  M  A  *  H  V  D  G  I  D  N  T  V  I  Q  I  K  T  N  L  C  M  D  L  S  C  S  S  S  *  L  F  F  *  A  C  N  R  A  G  V  Y  I  I  C  C  T  P  L  V  D  S  H  S  I  F  N  S  V  E  N  K  Y  V  T  L  S  *  K  L  L  L  L  M  K  Y  T  L  R  L  E  Y  I  F  I  V  T  N  S  M  R  N  *  Y  Q  L  </first_frame>
            <second_frame>  G  S  H  *  C  T  R  D  H  T  Q  R  R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : V  L  L  F  H  V  L  H  R  L  E  T  T  T  W  H  D  M  *  M  E  L  I  T  L  S  F  R  S  K  Q  I  F  A  W  I  *  V  V  H  R  L  N  S  S  F  R  R  A  T  G  L  E  C  I  *  S  V  V  R  P  *  L  I  V  I  R  Y  L  T  L  *  K  I  N  M  S  L  *  A  E  S  S  C  C  *  *  S  T  H  *  D  L  N  T  S  S  *  L  Q  I  P  *  E  T  N  I  N  L </second_frame>
            <third_frame>   E  A  I  N  A  Q  E  I  I  H  K  E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  S  Y  C  S  M  F  C  I  G  W  R  R  P  H  G  M  T  C  R  W  N  *  *  H  C  H  S  D  Q  N  K  S  L  H  G  S  K  L  F  I  V  L  T  L  L  L  G  V  Q  Q  G  W  S  V  Y  N  L  L  Y  A  L  S  *  *  S  F  D  I  *  L  C  R  K  *  I  C  H  F  K  L  K  A  L  V  V  D  E  V  H  I  K  T  *  I  H  L  H  S  Y  K  F  H  E  K  L  I  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32748" e_stop="32811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.766"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25942" e_stop="26082" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
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              <exon start="32520" stop="32636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29976" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29989" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30350" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30382" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31863" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32748" stop="32811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401084" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : GTTCCATGTTTTGCATAGGTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACA</gDNA_template>
            <first_frame> W  K  P  L  M  H  K  R  S  Y  T  K  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  W :   F  H  V  L  H  R  L  E  T  T  T  W  H  D  M  *  M  E  L  I  T </first_frame>
            <second_frame>  G  S  H  *  C  T  R  D  H  T  Q  R  R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : G  S  M  F  C  I  G  W  R  R  P  H  G  M  T  C  R  W  N  *  *   </second_frame>
            <third_frame>   E  A  I  N  A  Q  E  I  I  H  K  E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  V  P  C  F  A  *  V  G  D  D  H  M  A  *  H  V  D  G  I  D  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32766" e_stop="32783"/>
            <exon e_start="32880" e_stop="32884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.847" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25942" e_stop="26082" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29277" e_stop="29362" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.477" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29650" e_stop="29709" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29876" e_stop="30024" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308"/>
          </intron>
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            <referenceDNA id="SGN-E730799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29976" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29989" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30350" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30382" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : GTTGGAGACGACCACATG : GCGTG</gDNA_template>
            <first_frame> W  K  P  L  M  H  K  R  S  Y  T  K  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  W :   L  E  T  T  T  W :   R  </first_frame>
            <second_frame>  G  S  H  *  C  T  R  D  H  T  Q  R  R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : G  W  R  R  P  H   : G  V </second_frame>
            <third_frame>   E  A  I  N  A  Q  E  I  I  H  K  E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  V  G  D  D  H  M  :  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="32166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="0.991"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25942" e_stop="26082" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29277" e_stop="29362" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.477" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29650" e_stop="29709" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29876" e_stop="30024" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30333" e_stop="30459" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30819" e_stop="30974" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="0.991">
            <gDNA_exon_boundary e_start="31068" e_stop="31178" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628"/>
          </intron>
          <exon e_serial="13" e_score="0.950">
            <gDNA_exon_boundary e_start="31807" e_stop="32166" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E331958" strand="+"/>
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            <referenceDNA id="SGN-E722583" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E364350" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E410303" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E339842" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328922" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E328181" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407835" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="25993" stop="26082"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359758" strand="+"/>
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          <PGS_line>
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              <exon start="30333" stop="30430"/>
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            <referenceDNA id="SGN-E706513" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E321486" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E346083" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E312956" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26956" stop="26961"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E364928" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E407917" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E327935" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E328197" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E408421" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E408671" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29946" stop="30024"/>
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            <referenceDNA id="SGN-E404438" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30333" stop="30459"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30350" stop="30459"/>
              <exon start="30819" stop="30974"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31808" stop="32166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAGGTATCATGTTGAAGTATTTCAATATTACATCTACTGTTAGTAATTAAACAAGTTCAAATGTCATTTTGCTTTAAATTTTGAAAAAATTGATGTCAGATAAGTCTACTATAATTTGTTCTGGTTTATGATCCATACAAAGTTTTGTAACTGCTGCAGTTTTAGTCGCTGTAAATTTTTATGATACTTCCATATCTTGGTAGCTGGTATATGATTATAGTTCTTTTGCAGGGGGCAATTGCTGTGGGGAAC</gDNA_template>
            <first_frame> W  K  P  L  M  H  K  R  S  Y  T  K  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  V  S  C  *  S  I  S  I  L  H  L  L  L  V  I  K  Q  V  Q  M  S  F  C  F  K  F  *  K  N  *  C  Q  I  S  L  L  *  F  V  L  V  Y  D  P  Y  K  V  L  *  L  L  Q  F  *  S  L  *  I  F  M  I  L  P  Y  L  G  S  W  Y  M  I  I  V  L  L  Q  G  A  I  A  V  G  N </first_frame>
            <second_frame>  G  S  H  *  C  T  R  D  H  T  Q  R  R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R  Y  H  V  E  V  F  Q  Y  Y  I  Y  C  *  *  L  N  K  F  K  C  H  F  A  L  N  F  E  K  I  D  V  R  *  V  Y  Y  N  L  F  W  F  M  I  H  T  K  F  C  N  C  C  S  F  S  R  C  K  F  L  *  Y  F  H  I  L  V  A  G  I  *  L  *  F  F  C  R  G  Q  L  L  W  G   </second_frame>
            <third_frame>   E  A  I  N  A  Q  E  I  I  H  K  E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *  G  I  M  L  K  Y  F  N  I  T  S  T  V  S  N  *  T  S  S  N  V  I  L  L  *  I  L  K  K  L  M  S  D  K  S  T  I  I  C  S  G  L  *  S  I  Q  S  F  V  T  A  A  V  L  V  A  V  N  F  Y  D  T  S  I  S  W  *  L  V  Y  D  Y  S  S  F  A  G  G  N  C  C  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1302</number_coding_nucleotides>
                  <number_encoded_amino_acids>434</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKVSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="25942" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27185"/>
            <exon e_start="28508" e_stop="28581"/>
            <exon e_start="28821" e_stop="28897"/>
            <exon e_start="29168" e_stop="29204"/>
            <exon e_start="29277" e_stop="29362"/>
            <exon e_start="29650" e_stop="29709"/>
            <exon e_start="29876" e_stop="30024"/>
            <exon e_start="30333" e_stop="30459"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25942" e_stop="26082" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27185" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27186" i_stop="28507" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28581" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.983">
            <gDNA_intron_boundary i_start="28582" i_stop="28820" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28821" e_stop="28897" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28898" i_stop="29167" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29168" e_stop="29204" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.334" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29205" i_stop="29276" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29277" e_stop="29362" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.477" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29363" i_stop="29649" i_length="287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29650" e_stop="29709" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29710" i_stop="29875" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29876" e_stop="30024" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30025" i_stop="30332" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30333" e_stop="30459" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30460" i_stop="30818" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30819" e_stop="30974" e_length="156"/>
          </exon>
          <intron i_serial="11" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="0.961">
            <gDNA_exon_boundary e_start="31068" e_stop="31448" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25942" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25962" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25977" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25978" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25981" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25984" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25987" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25987" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25988" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25988" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25989" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25992" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="29966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25993" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25995" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25996" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25996" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25996" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25998" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25998" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26000" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26001" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26002" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26006" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26880" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26905" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26952" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26956" stop="26961"/>
              <exon start="27065" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27112" stop="27185"/>
              <exon start="28508" stop="28581"/>
              <exon start="28821" stop="28897"/>
              <exon start="29168" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29187" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29194" stop="29204"/>
              <exon start="29277" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29357" stop="29362"/>
              <exon start="29650" stop="29709"/>
              <exon start="29876" stop="30024"/>
              <exon start="30333" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30348" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30348" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30348" stop="30459"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCATTAATGCACAAGAGATCATACACAAAGAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAGGAAGGAAGAATTATATCTGTTGTTGCTGAAGAGAATTGGCATGTAAATTCTCGGTTTACCACAGTGGTCAATTATAGGGAGTCTGTGGTCATGCCTGGATTTATTGATGT : GCATGCCCATCTTGATGATCCTGGAAGATCAGAATGGGAAGGGTTTCCTTCAGGAACAAAAGCAGCTGCTGCAG : GTGGAGTAACCACATTAGTTGACATGCCTCTTAATAGTGCTCCATCAACAGTTTCTGAAGAGACTTTAAAACTTAAG : GTACAGGCTGCAGAAGGGAGGGTCTACGTGGATGTTG : GTTTCTGGGGAGGTTTGGTTCCAGAAAATGCAGAAAATACAAGTTCTCTGGAAAGACTTCTAAATGCAGGGGTTCTGGGATTGAAG : TCTTTTATGGTGCCATCAGGCATCAATGACTTTCCCATGACAACTGCATCCCACATAAAG : GAGGCACTCCCAACTCTGGCTCGATACAAAAGACCCCTACTTGTTCATGCCGAAGTGCTAGTAGATCTTGATGAAAAAGTGGAGCTGGAGGATGGGGTAGAGAATGCTAGATCATACTCTACATATCTCAAGACCAGGCCTGCTTCAAT : GGAAGAGGCTGCTATCAATCAGCTCATAACACTGTCAAAGGACGCGAGGGCTGGTGGTTCTGCTGAAGGAGCTCATCTCCATATTGTTCATCTATCTGATGCTAGAACTTCACTAAACCTCATTAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAGGTCTTTACTTTTACTAGTTACATGTGATTACTATGTGGGCTCAGAAATAATGCAGATATAAGCCATTTGGAGATAATGGGATTATCTTGAAACTCATATATTATGGAAAAGCTTACATGCATATGGATGGATGGGACTACGTAAACTATGTCTCCAATGTATCAGTCAAACATTTTCCGTAGAACTCATGGTTGAAGCGAGATTTTTATTCCGAAACTTCTACTCTTTTAGTCCTCCAAAAATTCCTATTAGAACTACTATACCATCTTA</gDNA_template>
            <first_frame> W  K  P  L  M  H  K  R  S  Y  T  K  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  E  G  R  I  I  S  V  V  A  E  E  N  W  H  V  N  S  R  F  T  T  V  V  N  Y  R  E  S  V  V  M  P  G  F  I  D  V :   H  A  H  L  D  D  P  G  R  S  E  W  E  G  F  P  S  G  T  K  A  A  A  A   : G  G  V  T  T  L  V  D  M  P  L  N  S  A  P  S  T  V  S  E  E  T  L  K  L  K  :  V  Q  A  A  E  G  R  V  Y  V  D  V   : G  F  W  G  G  L  V  P  E  N  A  E  N  T  S  S  L  E  R  L  L  N  A  G  V  L  G  L  K  :  S  F  M  V  P  S  G  I  N  D  F  P  M  T  T  A  S  H  I  K  :  E  A  L  P  T  L  A  R  Y  K  R  P  L  L  V  H  A  E  V  L  V  D  L  D  E  K  V  E  L  E  D  G  V  E  N  A  R  S  Y  S  T  Y  L  K  T  R  P  A  S  M :   E  E  A  A  I  N  Q  L  I  T  L  S  K  D  A  R  A  G  G  S  A  E  G  A  H  L  H  I  V  H  L  S  D  A  R  T  S  L  N  L  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  V  F  T  F  T  S  Y  M  *  L  L  C  G  L  R  N  N  A  D  I  S  H  L  E  I  M  G  L  S  *  N  S  Y  I  M  E  K  L  T  C  I  W  M  D  G  T  T  *  T  M  S  P  M  Y  Q  S  N  I  F  R  R  T  H  G  *  S  E  I  F  I  P  K  L  L  L  F  *  S  S  K  N  S  Y  *  N  Y  Y  T  I  L </first_frame>
            <second_frame>  G  S  H  *  C  T  R  D  H  T  Q  R  R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R  K  E  E  L  Y  L  L  L  L  K  R  I  G  M  *  I  L  G  L  P  Q  W  S  I  I  G  S  L  W  S  C  L  D  L  L  M   : C  M  P  I  L  M  I  L  E  D  Q  N  G  K  G  F  L  Q  E  Q  K  Q  L  L  Q  :  V  E  *  P  H  *  L  T  C  L  L  I  V  L  H  Q  Q  F  L  K  R  L  *  N  L  R :   Y  R  L  Q  K  G  G  S  T  W  M  L  :  V  S  G  E  V  W  F  Q  K  M  Q  K  I  Q  V  L  W  K  D  F  *  M  Q  G  F  W  D  *  S :   L  L  W  C  H  Q  A  S  M  T  F  P  *  Q  L  H  P  T  *  R :   R  H  S  Q  L  W  L  D  T  K  D  P  Y  L  F  M  P  K  C  *  *  I  L  M  K  K  W  S  W  R  M  G  *  R  M  L  D  H  T  L  H  I  S  R  P  G  L  L  Q   : W  K  R  L  L  S  I  S  S  *  H  C  Q  R  T  R  G  L  V  V  L  L  K  E  L  I  S  I  L  F  I  Y  L  M  L  E  L  H  *  T  S  L  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  R  S  L  L  L  L  V  T  C  D  Y  Y  V  G  S  E  I  M  Q  I  *  A  I  W  R  *  W  D  Y  L  E  T  H  I  L  W  K  S  L  H  A  Y  G  W  M  G  L  R  K  L  C  L  Q  C  I  S  Q  T  F  S  V  E  L  M  V  E  A  R  F  L  F  R  N  F  Y  S  F  S  P  P  K  I  P  I  R  T  T  I  P  S   </second_frame>
            <third_frame>   E  A  I  N  A  Q  E  I  I  H  K  E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K  G  R  K  N  Y  I  C  C  C  *  R  E  L  A  C  K  F  S  V  Y  H  S  G  Q  L  *  G  V  C  G  H  A  W  I  Y  *  C  :  A  C  P  S  *  *  S  W  K  I  R  M  G  R  V  S  F  R  N  K  S  S  C  C  R :   W  S  N  H  I  S  *  H  A  S  *  *  C  S  I  N  S  F  *  R  D  F  K  T  *   : G  T  G  C  R  R  E  G  L  R  G  C  W :   F  L  G  R  F  G  S  R  K  C  R  K  Y  K  F  S  G  K  T  S  K  C  R  G  S  G  I  E   : V  F  Y  G  A  I  R  H  Q  *  L  S  H  D  N  C  I  P  H  K   : G  G  T  P  N  S  G  S  I  Q  K  T  P  T  C  S  C  R  S  A  S  R  S  *  *  K  S  G  A  G  G  W  G  R  E  C  *  I  I  L  Y  I  S  Q  D  Q  A  C  F  N  :  G  R  G  C  Y  Q  S  A  H  N  T  V  K  G  R  E  G  W  W  F  C  *  R  S  S  S  P  Y  C  S  S  I  *  C  *  N  F  T  K  P  H  *   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T  G  L  Y  F  Y  *  L  H  V  I  T  M  W  A  Q  K  *  C  R  Y  K  P  F  G  D  N  G  I  I  L  K  L  I  Y  Y  G  K  A  Y  M  H  M  D  G  W  D  Y  V  N  Y  V  S  N  V  S  V  K  H  F  P  *  N  S  W  L  K  R  D  F  Y  S  E  T  S  T  L  L  V  L  Q  K  F  L  L  E  L  L  Y  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27185"/>
                    <exon start="28508" stop="28581"/>
                    <exon start="28821" stop="28897"/>
                    <exon start="29168" stop="29204"/>
                    <exon start="29277" stop="29362"/>
                    <exon start="29650" stop="29709"/>
                    <exon start="29876" stop="30024"/>
                    <exon start="30333" stop="30459"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31205"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEGRIISVVAEENWHVNSRFTTVVNYRESVVMPGFIDVHAHLDDPGRSEWEGFPSGTKAAAAGGVTTLVDMPLNSAPSTVSEETLKLKVQAAEGRVYVDVGFWGGLVPENAENTSSLERLLNAGVLGLKSFMVPSGINDFPMTTASHIKEALPTLARYKRPLLVHAEVLVDLDEKVELEDGVENARSYSTYLKTRPASMEEAAINQLITLSKDARAGGSAEGAHLHIVHLSDARTSLNLIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQVFTFTSYM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31255" stop="31446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDYLETHILWKSLHAYGWMGLRKLCLQCISQTFSVELMVEARFLFRNFYSFSPPKIPIRTTIPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="25977" e_stop="26082"/>
            <exon e_start="26868" e_stop="26961"/>
            <exon e_start="27065" e_stop="27075"/>
            <exon e_start="30819" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32766" e_stop="33097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.815" e_score="0.962"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="0.957"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="25977" e_stop="26082" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.815">
            <gDNA_intron_boundary i_start="26083" i_stop="26867" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="26868" e_stop="26961" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26962" i_stop="27064" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27065" e_stop="27075" e_length="11"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="27076" i_stop="30818" i_length="3743"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="30819" e_stop="30974" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31068" e_stop="31178" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31807" e_stop="31917" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32146" e_stop="32244" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32520" e_stop="32668" e_length="149"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32766" e_stop="33097" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25977" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27075"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25977" stop="26082"/>
              <exon start="26868" stop="26961"/>
              <exon start="27065" stop="27075"/>
              <exon start="30819" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31071" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31839" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31858" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31863" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="32945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32191" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32668"/>
              <exon start="32766" stop="33066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32668"/>
              <exon start="32766" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32606" stop="32668"/>
              <exon start="32766" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32619" stop="32668"/>
              <exon start="32766" stop="33066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCTGAGGGTTAGCAGAGAAACATGGAATCTGGAAAGAAGAGTACTCTGGCTCTGCTACCACTCTTCCTTTCTTTCCTGTTTTACTTTGATTTCTCAAAAAAG : CTTCCCTCAAGTGACTGCAGCCTTCTGCCTCATAATCACTATTGGATATCCAGCAAACGTATTGTGACTCCAAACGGGACAATTTCCGGTGCAG : TTGAGATAAAG : GAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAAATCTGATCTGAA</gDNA_template>
            <first_frame> E  G  *  G  L  A  E  K  H  G  I  W  K  E  E  Y  S  G  S  A  T  T  L  P  F  F  P  V  L  L  *  F  L  K  K   : A  S  L  K  *  L  Q  P  S  A  S  *  S  L  L  D  I  Q  Q  T  Y  C  D  S  K  R  D  N  F  R  C  S :   *  D  K   : G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  V  G  D  D  H  M  A  *  H  V  D  G  I  D  N  T  V  I  Q  I  K  T  N  L  C  M  D  L  S  C  S  S  S  *  L  F  F  *  A  C  N  R  A  G  V  Y  I  I  C  C  T  P  L  V  D  S  H  S  I  F  N  S  V  E  N  K  Y  V  T  L  S  *  K  L  L  L  L  M  K  Y  T  L  R  L  E  Y  I  F  I  V  T  N  S  M  R  N  *  Y  Q  L  N  F  V  F  L  A  K  S  D  L   </first_frame>
            <second_frame>  K  A  E  G  *  Q  R  N  M  E  S  G  K  K  S  T  L  A  L  L  P  L  F  L  S  F  L  F  Y  F  D  F  S  K  K  :  L  P  S  S  D  C  S  L  L  P  H  N  H  Y  W  I  S  S  K  R  I  V  T  P  N  G  T  I  S  G  A   : V  E  I  K  :  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  W :   L  E  T  T  T  W  H  D  M  *  M  E  L  I  T  L  S  F  R  S  K  Q  I  F  A  W  I  *  V  V  H  R  L  N  S  S  F  R  R  A  T  G  L  E  C  I  *  S  V  V  R  P  *  L  I  V  I  R  Y  L  T  L  *  K  I  N  M  S  L  *  A  E  S  S  C  C  *  *  S  T  H  *  D  L  N  T  S  S  *  L  Q  I  P  *  E  T  N  I  N  L  I  L  S  F  *  P  N  L  I  *  </second_frame>
            <third_frame>   R  L  R  V  S  R  E  T  W  N  L  E  R  R  V  L  W  L  C  Y  H  S  S  F  L  S  C  F  T  L  I  S  Q  K  S :   F  P  Q  V  T  A  A  F  C  L  I  I  T  I  G  Y  P  A  N  V  L  *  L  Q  T  G  Q  F  P  V  Q  :  L  R  *  R :   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : G  W  R  R  P  H  G  M  T  C  R  W  N  *  *  H  C  H  S  D  Q  N  K  S  L  H  G  S  K  L  F  I  V  L  T  L  L  L  G  V  Q  Q  G  W  S  V  Y  N  L  L  Y  A  L  S  *  *  S  F  D  I  *  L  C  R  K  *  I  C  H  F  K  L  K  A  L  V  V  D  E  V  H  I  K  T  *  I  H  L  H  S  Y  K  F  H  E  K  L  I  S  T  *  F  C  L  S  S  Q  I  *  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25993" stop="26082"/>
                    <exon start="26868" stop="26961"/>
                    <exon start="27065" stop="27075"/>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRNMESGKKSTLALLPLFLSFLFYFDFSKKLPSSDCSLLPHNHYWISSKRIVTPNGTISGAVEIKEAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="30818" e_stop="30974"/>
            <exon e_start="31068" e_stop="31178"/>
            <exon e_start="31807" e_stop="31917"/>
            <exon e_start="32146" e_stop="32244"/>
            <exon e_start="32520" e_stop="32668"/>
            <exon e_start="32766" e_stop="33097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30818" e_stop="30974" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30975" i_stop="31067" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31068" e_stop="31178" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31179" i_stop="31806" i_length="628"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31807" e_stop="31917" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31918" i_stop="32145" i_length="228"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32146" e_stop="32244" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32245" i_stop="32519" i_length="275"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32520" e_stop="32668" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32669" i_stop="32765" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32766" e_stop="33097" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30818" stop="30974"/>
              <exon start="31068" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31071" stop="31178"/>
              <exon start="31807" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31839" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31858" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31863" stop="31917"/>
              <exon start="32146" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="32945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32191" stop="32244"/>
              <exon start="32520" stop="32668"/>
              <exon start="32766" stop="33085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32668"/>
              <exon start="32766" stop="33066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32668"/>
              <exon start="32766" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32606" stop="32668"/>
              <exon start="32766" stop="33039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32619" stop="32668"/>
              <exon start="32766" stop="33066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGCCAAACAAAGGGGTGATAGCATCACCGTTGAAACTTGCCCCCATTATCTCGCTTTTGCAGCTGAAGATATTCCTGATGGAGATACTCGGTTTAAGTGTGCTCCACCCATTCGTGATGCAGCCAATAAAGAAAAACTATGGGATGCGTTACTG : GATGGAGATATTGACATGTTAAGTTCTGACCACTCGCCTTCTGTGCCAGAAATGAAACTCTTAGATGAGGGAGACTTCTTGAAAGCATGGGGTGGCATATCTTCCTTACAG : TTTGTTCTACCCGTGACATGGACACATGGGCGTAAGTATGGAATAACATATGAGCAGTTGGCTTCTTGGTGGAGTGAGAAGCCTGCCAAACTTGCAGGTCTAACGACTAAG : GGGGCAATTGCTGTGGGGAACCAAGCAGATATAGTTGTTTGGGAGCCAGACATGGAGTTCGACCTGGATAATGACTACCCTGTACATATTAAGCACCCT : AGTATATCCGCATACATGGGATCAAGACTCTCTGGGAAAGTTTTGGCAACCTTTGTGGGCGGAAATCTGGTATACAAGGAGGGAAATCATGCTTCTCAAGCATGCGCTCTCCCAATTCTTCATAAATAGTTAGTGCTACGAGCCTATTG : GTTGGAGACGACCACATGGCATGACATGTAGATGGAATTGATAACACTGTCATTCAGATCAAAACAAATCTTTGCATGGATCTAAGTTGTTCATCGTCTTAACTCTTCTTTTAGGCGTGCAACAGGGCTGGAGTGTATATAATCTGTTGTACGCCCTTAGTTGATAGTCATTCGATATTTAACTCTGTAGAAAATAAATATGTCACTTTAAGCTGAAAGCTCTTGTTGTTGATGAAGTACACATTAAGACTTGAATACATCTTCATAGTTACAAATTCCATGAGAAACTAATATCAACTTAATTTTGTCTTTCTAGCCAAATCTGATCTGAA</gDNA_template>
            <first_frame> G  S  Q  T  K  G  *  *  H  H  R  *  N  L  P  P  L  S  R  F  C  S  *  R  Y  S  *  W  R  Y  S  V  *  V  C  S  T  H  S  *  C  S  Q  *  R  K  T  M  G  C  V  T   : G  W  R  Y  *  H  V  K  F  *  P  L  A  F  C  A  R  N  E  T  L  R  *  G  R  L  L  E  S  M  G  W  H  I  F  L  T   : V  C  S  T  R  D  M  D  T  W  A  *  V  W  N  N  I  *  A  V  G  F  L  V  E  *  E  A  C  Q  T  C  R  S  N  D  *   : G  G  N  C  C  G  E  P  S  R  Y  S  C  L  G  A  R  H  G  V  R  P  G  *  *  L  P  C  T  Y  *  A  P   : *  Y  I  R  I  H  G  I  K  T  L  W  E  S  F  G  N  L  C  G  R  K  S  G  I  Q  G  G  K  S  C  F  S  S  M  R  S  P  N  S  S  *  I  V  S  A  T  S  L  L  :  V  G  D  D  H  M  A  *  H  V  D  G  I  D  N  T  V  I  Q  I  K  T  N  L  C  M  D  L  S  C  S  S  S  *  L  F  F  *  A  C  N  R  A  G  V  Y  I  I  C  C  T  P  L  V  D  S  H  S  I  F  N  S  V  E  N  K  Y  V  T  L  S  *  K  L  L  L  L  M  K  Y  T  L  R  L  E  Y  I  F  I  V  T  N  S  M  R  N  *  Y  Q  L  N  F  V  F  L  A  K  S  D  L   </first_frame>
            <second_frame>  E  A  K  Q  R  G  D  S  I  T  V  E  T  C  P  H  Y  L  A  F  A  A  E  D  I  P  D  G  D  T  R  F  K  C  A  P  P  I  R  D  A  A  N  K  E  K  L  W  D  A  L  L  :  D  G  D  I  D  M  L  S  S  D  H  S  P  S  V  P  E  M  K  L  L  D  E  G  D  F  L  K  A  W  G  G  I  S  S  L  Q  :  F  V  L  P  V  T  W  T  H  G  R  K  Y  G  I  T  Y  E  Q  L  A  S  W  W  S  E  K  P  A  K  L  A  G  L  T  T  K  :  G  A  I  A  V  G  N  Q  A  D  I  V  V  W  E  P  D  M  E  F  D  L  D  N  D  Y  P  V  H  I  K  H  P  :  S  I  S  A  Y  M  G  S  R  L  S  G  K  V  L  A  T  F  V  G  G  N  L  V  Y  K  E  G  N  H  A  S  Q  A  C  A  L  P  I  L  H  K  *  L  V  L  R  A  Y  W :   L  E  T  T  T  W  H  D  M  *  M  E  L  I  T  L  S  F  R  S  K  Q  I  F  A  W  I  *  V  V  H  R  L  N  S  S  F  R  R  A  T  G  L  E  C  I  *  S  V  V  R  P  *  L  I  V  I  R  Y  L  T  L  *  K  I  N  M  S  L  *  A  E  S  S  C  C  *  *  S  T  H  *  D  L  N  T  S  S  *  L  Q  I  P  *  E  T  N  I  N  L  I  L  S  F  *  P  N  L  I  *  </second_frame>
            <third_frame>   K  P  N  K  G  V  I  A  S  P  L  K  L  A  P  I  I  S  L  L  Q  L  K  I  F  L  M  E  I  L  G  L  S  V  L  H  P  F  V  M  Q  P  I  K  K  N  Y  G  M  R  Y  W :   M  E  I  L  T  C  *  V  L  T  T  R  L  L  C  Q  K  *  N  S  *  M  R  E  T  S  *  K  H  G  V  A  Y  L  P  Y  S :   L  F  Y  P  *  H  G  H  M  G  V  S  M  E  *  H  M  S  S  W  L  L  G  G  V  R  S  L  P  N  L  Q  V  *  R  L  R :   G  Q  L  L  W  G  T  K  Q  I  *  L  F  G  S  Q  T  W  S  S  T  W  I  M  T  T  L  Y  I  L  S  T  L :   V  Y  P  H  T  W  D  Q  D  S  L  G  K  F  W  Q  P  L  W  A  E  I  W  Y  T  R  R  E  I  M  L  L  K  H  A  L  S  Q  F  F  I  N  S  *  C  Y  E  P  I   : G  W  R  R  P  H  G  M  T  C  R  W  N  *  *  H  C  H  S  D  Q  N  K  S  L  H  G  S  K  L  F  I  V  L  T  L  L  L  G  V  Q  Q  G  W  S  V  Y  N  L  L  Y  A  L  S  *  *  S  F  D  I  *  L  C  R  K  *  I  C  H  F  K  L  K  A  L  V  V  D  E  V  H  I  K  T  *  I  H  L  H  S  Y  K  F  H  E  K  L  I  S  T  *  F  C  L  S  S  Q  I  *  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30819" stop="30974"/>
                    <exon start="31068" stop="31178"/>
                    <exon start="31807" stop="31917"/>
                    <exon start="32146" stop="32244"/>
                    <exon start="32520" stop="32648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAKQRGDSITVETCPHYLAFAAEDIPDGDTRFKCAPPIRDAANKEKLWDALLDGDIDMLSSDHSPSVPEMKLLDEGDFLKAWGGISSLQFVLPVTWTHGRKYGITYEQLASWWSEKPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKVLATFVGGNLVYKEGNHASQACALPILHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33346" PGL_stop="35088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33346" e_stop="33844"/>
            <exon e_start="34510" e_stop="35088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33346" e_stop="33844" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.965">
            <gDNA_intron_boundary i_start="33845" i_stop="34509" i_length="665"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="34510" e_stop="35088" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33346" stop="33844"/>
              <exon start="34510" stop="34843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33615" stop="33844"/>
              <exon start="34510" stop="35088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAATGAATCTTTTCAACTTCAACTGCAAATGCAAATCCAACAATTTCTTCAGCATTCATCTTCCTCCGCCTCACAGCTCGCTCTGTAACCGTCGTACAACTAGGTTCTCCGTCCGTTTCTCATCCGAGTCAACTCACAGAGTCAAACTCGCCGAGTCACTGCAATCCGAAACCTTGAAGCTTCTAGAATGGCCCGCCGTGTGTCAACAGCTCTCCGCTTTCACGTCCACATCCATGGGATACGCCGCAGCACAATCTGCTCGGATTCCGGTGGGTAAAACTCGTGAAGAGAGCAGTAGACTTCTCTCTCAGACCTCGGCCGCGGTGGCTGTACCTCGGCCGTTGGATTTTACCGGAATTGAAGATATTTCCCCAATTGTTGATGCTTCCGTTGCAGGCGGTGTACTCTCGATTCGTGAACTTTGCTCTGTGAAACGAACCTTGGCAGCGGCGAGATTTTTGCTCCAACAGTTGGAGGAGATTGATTTTTCTGAAAG : TTAACTCAAAATGGCGAAGCATGTCTCATGTGGTAGTGATGGATTCTCATGAAGTTCCATTTAAATAGTATTGAGCAGTTTCATTAGAATGTCTAATTATCTTCAAACAGGTACTCTTCTCTGAAGGAAATTCTTCACAGTTGTGATTTTCTTGTGGAATTGGAGCAAAAAATAGAATTCTGTATTGATTGCAGCTTTTCAGTAATCCTTGATAGAGCTAGTGAAGATTTGGAAATTATAAGATCCGAGAGAAAGAGGAACATGGATAATCTAGAATTATTGTTGAAGCAATTATCAACTCAAGTTTTTCAAGGTGGAGGATTTGACAGGCCTTTAGTGACCAAGCGCCGTTCAAGATTGTGTGTTGCTGTGAGAGCTTCACATAGATCTTTGCTTCCTAATTCCGTAATCCTAGATACAAGCAGTAGTGGATCTACATACTTCATGGAACCTAAAGAGGCAGTTGAGCTAAACAACATGGAAGTTAAACTTTCTAGTTCTGAGAAGGTTGAGGAGCAAACAATTTTGAGTTTGCTTACATCTGAAATAGCAGAATCTAATATGAAAATAAAGCACTTA</gDNA_template>
            <first_frame> L  Q  *  I  F  S  T  S  T  A  N  A  N  P  T  I  S  S  A  F  I  F  L  R  L  T  A  R  S  V  T  V  V  Q  L  G  S  P  S  V  S  H  P  S  Q  L  T  E  S  N  S  P  S  H  C  N  P  K  P  *  S  F  *  N  G  P  P  C  V  N  S  S  P  L  S  R  P  H  P  W  D  T  P  Q  H  N  L  L  G  F  R  W  V  K  L  V  K  R  A  V  D  F  S  L  R  P  R  P  R  W  L  Y  L  G  R  W  I  L  P  E  L  K  I  F  P  Q  L  L  M  L  P  L  Q  A  V  Y  S  R  F  V  N  F  A  L  *  N  E  P  W  Q  R  R  D  F  C  S  N  S  W  R  R  L  I  F  L  K   : V  N  S  K  W  R  S  M  S  H  V  V  V  M  D  S  H  E  V  P  F  K  *  Y  *  A  V  S  L  E  C  L  I  I  F  K  Q  V  L  F  S  E  G  N  S  S  Q  L  *  F  S  C  G  I  G  A  K  N  R  I  L  Y  *  L  Q  L  F  S  N  P  *  *  S  *  *  R  F  G  N  Y  K  I  R  E  K  E  E  H  G  *  S  R  I  I  V  E  A  I  I  N  S  S  F  S  R  W  R  I  *  Q  A  F  S  D  Q  A  P  F  K  I  V  C  C  C  E  S  F  T  *  I  F  A  S  *  F  R  N  P  R  Y  K  Q  *  W  I  Y  I  L  H  G  T  *  R  G  S  *  A  K  Q  H  G  S  *  T  F  *  F  *  E  G  *  G  A  N  N  F  E  F  A  Y  I  *  N  S  R  I  *  Y  E  N  K  A  L  </first_frame>
            <second_frame>  F  N  E  S  F  Q  L  Q  L  Q  M  Q  I  Q  Q  F  L  Q  H  S  S  S  S  A  S  Q  L  A  L  *  P  S  Y  N  *  V  L  R  P  F  L  I  R  V  N  S  Q  S  Q  T  R  R  V  T  A  I  R  N  L  E  A  S  R  M  A  R  R  V  S  T  A  L  R  F  H  V  H  I  H  G  I  R  R  S  T  I  C  S  D  S  G  G  *  N  S  *  R  E  Q  *  T  S  L  S  D  L  G  R  G  G  C  T  S  A  V  G  F  Y  R  N  *  R  Y  F  P  N  C  *  C  F  R  C  R  R  C  T  L  D  S  *  T  L  L  C  E  T  N  L  G  S  G  E  I  F  A  P  T  V  G  G  D  *  F  F  *  K  :  L  T  Q  N  G  E  A  C  L  M  W  *  *  W  I  L  M  K  F  H  L  N  S  I  E  Q  F  H  *  N  V  *  L  S  S  N  R  Y  S  S  L  K  E  I  L  H  S  C  D  F  L  V  E  L  E  Q  K  I  E  F  C  I  D  C  S  F  S  V  I  L  D  R  A  S  E  D  L  E  I  I  R  S  E  R  K  R  N  M  D  N  L  E  L  L  L  K  Q  L  S  T  Q  V  F  Q  G  G  G  F  D  R  P  L  V  T  K  R  R  S  R  L  C  V  A  V  R  A  S  H  R  S  L  L  P  N  S  V  I  L  D  T  S  S  S  G  S  T  Y  F  M  E  P  K  E  A  V  E  L  N  N  M  E  V  K  L  S  S  S  E  K  V  E  E  Q  T  I  L  S  L  L  T  S  E  I  A  E  S  N  M  K  I  K  H  L </second_frame>
            <third_frame>   S  M  N  L  F  N  F  N  C  K  C  K  S  N  N  F  F  S  I  H  L  P  P  P  H  S  S  L  C  N  R  R  T  T  R  F  S  V  R  F  S  S  E  S  T  H  R  V  K  L  A  E  S  L  Q  S  E  T  L  K  L  L  E  W  P  A  V  C  Q  Q  L  S  A  F  T  S  T  S  M  G  Y  A  A  A  Q  S  A  R  I  P  V  G  K  T  R  E  E  S  S  R  L  L  S  Q  T  S  A  A  V  A  V  P  R  P  L  D  F  T  G  I  E  D  I  S  P  I  V  D  A  S  V  A  G  G  V  L  S  I  R  E  L  C  S  V  K  R  T  L  A  A  A  R  F  L  L  Q  Q  L  E  E  I  D  F  S  E  S :   *  L  K  M  A  K  H  V  S  C  G  S  D  G  F  S  *  S  S  I  *  I  V  L  S  S  F  I  R  M  S  N  Y  L  Q  T  G  T  L  L  *  R  K  F  F  T  V  V  I  F  L  W  N  W  S  K  K  *  N  S  V  L  I  A  A  F  Q  *  S  L  I  E  L  V  K  I  W  K  L  *  D  P  R  E  R  G  T  W  I  I  *  N  Y  C  *  S  N  Y  Q  L  K  F  F  K  V  E  D  L  T  G  L  *  *  P  S  A  V  Q  D  C  V  L  L  *  E  L  H  I  D  L  C  F  L  I  P  *  S  *  I  Q  A  V  V  D  L  H  T  S  W  N  L  K  R  Q  L  S  *  T  T  W  K  L  N  F  L  V  L  R  R  L  R  S  K  Q  F  *  V  C  L  H  L  K  *  Q  N  L  I  *  K  *  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33348" stop="33844"/>
                    <exon start="34510" stop="34513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMNLFNFNCKCKSNNFFSIHLPPPHSSLCNRRTTRFSVRFSSESTHRVKLAESLQSETLKLLEWPAVCQQLSAFTSTSMGYAAAQSARIPVGKTREESSRLLSQTSAAVAVPRPLDFTGIEDISPIVDASVAGGVLSIRELCSVKRTLAAARFLLQQLEEIDFSES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34606" stop="35088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSNRYSSLKEILHSCDFLVELEQKIEFCIDCSFSVILDRASEDLEIIRSERKRNMDNLELLLKQLSTQVFQGGGFDRPLVTKRRSRLCVAVRASHRSLLPNSVILDTSSSGSTYFMEPKEAVELNNMEVKLSSSEKVEEQTILSLLTSEIAESNMKIKHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35142" PGL_stop="36094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35142" e_stop="35553"/>
            <exon e_start="35719" e_stop="36094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.484" e_score="0.968"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="35142" e_stop="35553" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.484">
            <gDNA_intron_boundary i_start="35554" i_stop="35718" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="35719" e_stop="36094" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35142" stop="35553"/>
              <exon start="35719" stop="36094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35142" stop="35553"/>
              <exon start="35719" stop="35982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGATGGGTGCTGCCTGTCCAGCTTTAAGTCCAAGAAATTGCAACATATCCCAATCTGAACATTTATCTATAAATGTAGAAGGGATACAACATCCTTTGCTTCTTGAATCCTCCTTGGAAAACTTGTCGACTGATGTGTCCCCAAGATCACCTGATTTGGATCAAGGAAATGGTGTCGTGAATTTCGAGACAAAATCTCATGCACATTTCCCTGTGCCCATTGATATTAAAATTGGTCATGGAACAAAGGTTGTTGTCATCTCGGGCCCAAATACCGGAGGCAAAACGGCTTCAATGAAGACTCTAGGACTGGCTTCTATGATGTTGAAGGCTGGCATGTATTTGCCTGCCCAAAATAAACCACAGCTTCCATGGTTTGACCTTATTCTGGCAGACATTGGGGACCAACAG : TCTCTGGAGCAAAGTCTATCAACCTTTAGTGGGCACATTTCACGGCTTCGTGAGATTCTAGAAGTTGCTTCTGGAGAATCTCTAGTTCTTATTGATGAAATTGGAAGTGGGACCGATCCTTCAGAAGGTGTAGCACTTTCAGAAAGCATACTGCAATATCTCAAGGACAGGGTTAATTTAGCTGTTGTAACTACCCACTATGCGGATTTAACTCGCTTAAAAGAAAAGGACAATCGGTTTGAAACAGCAGCAACAGAGTTTTCCTTGGAGACTCTACAGCCTACCTATCGGATTCTATGGGGAAGCATGGGTGAATCAAATGCCTTGAATATTGCAAAATCAATGGGCTTTGATGAAAGAATAATTGAGCGAGCAG</gDNA_template>
            <first_frame> V  D  G  C  C  L  S  S  F  K  S  K  K  L  Q  H  I  P  I  *  T  F  I  Y  K  C  R  R  D  T  T  S  F  A  S  *  I  L  L  G  K  L  V  D  *  C  V  P  K  I  T  *  F  G  S  R  K  W  C  R  E  F  R  D  K  I  S  C  T  F  P  C  A  H  *  Y  *  N  W  S  W  N  K  G  C  C  H  L  G  P  K  Y  R  R  Q  N  G  F  N  E  D  S  R  T  G  F  Y  D  V  E  G  W  H  V  F  A  C  P  K  *  T  T  A  S  M  V  *  P  Y  S  G  R  H  W  G  P  T   : V  S  G  A  K  S  I  N  L  *  W  A  H  F  T  A  S  *  D  S  R  S  C  F  W  R  I  S  S  S  Y  *  *  N  W  K  W  D  R  S  F  R  R  C  S  T  F  R  K  H  T  A  I  S  Q  G  Q  G  *  F  S  C  C  N  Y  P  L  C  G  F  N  S  L  K  R  K  G  Q  S  V  *  N  S  S  N  R  V  F  L  G  D  S  T  A  Y  L  S  D  S  M  G  K  H  G  *  I  K  C  L  E  Y  C  K  I  N  G  L  *  *  K  N  N  *  A  S   </first_frame>
            <second_frame>  W  M  G  A  A  C  P  A  L  S  P  R  N  C  N  I  S  Q  S  E  H  L  S  I  N  V  E  G  I  Q  H  P  L  L  L  E  S  S  L  E  N  L  S  T  D  V  S  P  R  S  P  D  L  D  Q  G  N  G  V  V  N  F  E  T  K  S  H  A  H  F  P  V  P  I  D  I  K  I  G  H  G  T  K  V  V  V  I  S  G  P  N  T  G  G  K  T  A  S  M  K  T  L  G  L  A  S  M  M  L  K  A  G  M  Y  L  P  A  Q  N  K  P  Q  L  P  W  F  D  L  I  L  A  D  I  G  D  Q  Q  :  S  L  E  Q  S  L  S  T  F  S  G  H  I  S  R  L  R  E  I  L  E  V  A  S  G  E  S  L  V  L  I  D  E  I  G  S  G  T  D  P  S  E  G  V  A  L  S  E  S  I  L  Q  Y  L  K  D  R  V  N  L  A  V  V  T  T  H  Y  A  D  L  T  R  L  K  E  K  D  N  R  F  E  T  A  A  T  E  F  S  L  E  T  L  Q  P  T  Y  R  I  L  W  G  S  M  G  E  S  N  A  L  N  I  A  K  S  M  G  F  D  E  R  I  I  E  R  A  </second_frame>
            <third_frame>   G  W  V  L  P  V  Q  L  *  V  Q  E  I  A  T  Y  P  N  L  N  I  Y  L  *  M  *  K  G  Y  N  I  L  C  F  L  N  P  P  W  K  T  C  R  L  M  C  P  Q  D  H  L  I  W  I  K  E  M  V  S  *  I  S  R  Q  N  L  M  H  I  S  L  C  P  L  I  L  K  L  V  M  E  Q  R  L  L  S  S  R  A  Q  I  P  E  A  K  R  L  Q  *  R  L  *  D  W  L  L  *  C  *  R  L  A  C  I  C  L  P  K  I  N  H  S  F  H  G  L  T  L  F  W  Q  T  L  G  T  N  S :   L  W  S  K  V  Y  Q  P  L  V  G  T  F  H  G  F  V  R  F  *  K  L  L  L  E  N  L  *  F  L  L  M  K  L  E  V  G  P  I  L  Q  K  V  *  H  F  Q  K  A  Y  C  N  I  S  R  T  G  L  I  *  L  L  *  L  P  T  M  R  I  *  L  A  *  K  K  R  T  I  G  L  K  Q  Q  Q  Q  S  F  P  W  R  L  Y  S  L  P  I  G  F  Y  G  E  A  W  V  N  Q  M  P  *  I  L  Q  N  Q  W  A  L  M  K  E  *  L  S  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35143" stop="35553"/>
                    <exon start="35719" stop="36093"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WMGAACPALSPRNCNISQSEHLSINVEGIQHPLLLESSLENLSTDVSPRSPDLDQGNGVVNFETKSHAHFPVPIDIKIGHGTKVVVISGPNTGGKTASMKTLGLASMMLKAGMYLPAQNKPQLPWFDLILADIGDQQSLEQSLSTFSGHISRLREILEVASGESLVLIDEIGSGTDPSEGVALSESILQYLKDRVNLAVVTTHYADLTRLKEKDNRFETAATEFSLETLQPTYRILWGSMGESNALNIAKSMGFDERIIERA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38804" PGL_stop="40624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38804" e_stop="39455"/>
            <exon e_start="39660" e_stop="39900"/>
            <exon e_start="40058" e_stop="40178"/>
            <exon e_start="40264" e_stop="40624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.931" e_score="0.992"/>
          <exon-intron don_prob="0.954" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.061" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="38804" e_stop="39455" e_length="652"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.931">
            <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39660" e_stop="39900" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40058" e_stop="40178" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.061">
            <gDNA_intron_boundary i_start="40179" i_stop="40263" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="40264" e_stop="40624" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38804" stop="39455"/>
              <exon start="39660" stop="39725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39206" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39455"/>
              <exon start="39660" stop="39836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39210" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39211" stop="39455"/>
              <exon start="39660" stop="39872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39212" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39213" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39215" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39215" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39218" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39218" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39219" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39219" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39219" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39226" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39227" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39231" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39234" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39248" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39252" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39252" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39257" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39265" stop="39455"/>
              <exon start="39660" stop="39862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39359" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39377" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39437" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39667" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39701" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39709" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39729" stop="39900"/>
              <exon start="40058" stop="40178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39819" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559901" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39821" stop="39900"/>
              <exon start="40058" stop="40178"/>
              <exon start="40264" stop="40614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421425" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40132" stop="40178"/>
              <exon start="40264" stop="40624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCCTTCAGTATTTAGACAAAACTTTCTTGGCTTCTTTCTTCTATACAATAAAAAAAATAATATTCCTAATTTAAAACAAGTATGTTTGATTTTCTGGATTTTCAAAACCATGTTCCAAGAAAAAGATAATTTTATTTATACAAAATTTTCATAACGTAAAATATTTAACTACTAATAAGTGCCATTTGAACAATGGATAGATGTGACAGATGTACTGTCAACATTATTGATGCCACGTCAGTACTTTATTTTCGGTTACAACAGTCATTTGGATAAGCATCTCAAGAGTTTGTACATTTCGTAGTTTGACTTGATACGAAATTTTATTTATTTTTTATTTTTTTTGAAATTTGTAATTTATATAAATAGTCATAATATTGTTGTTGCTGCTGGGAATTTTATGGTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG : GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG : GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAG : GTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTTTCTTACTAAAC</gDNA_template>
            <first_frame> Q  P  S  V  F  R  Q  N  F  L  G  F  F  L  L  Y  N  K  K  N  N  I  P  N  L  K  Q  V  C  L  I  F  W  I  F  K  T  M  F  Q  E  K  D  N  F  I  Y  T  K  F  S  *  R  K  I  F  N  Y  *  *  V  P  F  E  Q  W  I  D  V  T  D  V  L  S  T  L  L  M  P  R  Q  Y  F  I  F  G  Y  N  S  H  L  D  K  H  L  K  S  L  Y  I  S  *  F  D  L  I  R  N  F  I  Y  F  L  F  F  L  K  F  V  I  Y  I  N  S  H  N  I  V  V  A  A  G  N  F  M  V  N  E  K  S  F  *  L  L  F  E  *  *  T  C  W  L  C  L  S  N  L  L  G  S  H  L  Q  S  *  A  L  L  R  Q  I  D  R  K  R  R  L  K  Q  R  K  R  L  K  K  V  S  N  H  G  S  Q  T  Q  L  F  T  T  F  Q  M  G  I  S  W  L  F  L  M  E  M  K  T  L  S  I  Q   : G  L  L  W  *  W  M  T  Y  S  A  S  F  L  V  V  *  T  T  L  L  I  *  G  N  I  M  V  F  Q  D  K  L  Q  K  L  *  *  W  L  R  L  T  K  F  *  G  I  G  R  H  T  L  L  I  K  S  S  K  N  L  K  A  N  L  L  S  F  S  L  T  I  K  P  P  L  F  F  L  L  G :   I  A  M  E  V  C  R  Y  T  G  E  L  L  Q  M  D  H  *  Y  V  L  M  I  Q  S  S  F  K  L  L  V  G  N  C  I  P  R  F  L  Q  :  V  V  S  S  *  V  T  L  G  *  *  A  L  I  I  Q  C  T  K  *  K  E  L  R  V  K  M  M  K  E  M  S  M  L  *  F  S  R  W  T  C  T  P  N  S  T  A  F  R  A  G  E  V  L  R  I  G  L  V  L  L  R  L  N  E  T  E  D  L  K  L  *  R  S  S  Q  V  E  S  L  L  *  *  C  *  I  T  N  G  M  L  L  C  G  N  L  V  K  *  S  E  I  I  C  C  C  N  N  N  I  S  I  I  N  R  L  F  L  T  K  </first_frame>
            <second_frame>  S  L  Q  Y  L  D  K  T  F  L  A  S  F  F  Y  T  I  K  K  I  I  F  L  I  *  N  K  Y  V  *  F  S  G  F  S  K  P  C  S  K  K  K  I  I  L  F  I  Q  N  F  H  N  V  K  Y  L  T  T  N  K  C  H  L  N  N  G  *  M  *  Q  M  Y  C  Q  H  Y  *  C  H  V  S  T  L  F  S  V  T  T  V  I  W  I  S  I  S  R  V  C  T  F  R  S  L  T  *  Y  E  I  L  F  I  F  Y  F  F  *  N  L  *  F  I  *  I  V  I  I  L  L  L  L  L  G  I  L  W  L  M  K  K  V  S  S  F  Y  L  S  S  K  H  V  G  C  V  *  A  I  Y  W  E  A  T  F  R  A  E  R  C  S  D  R  *  T  E  K  G  G  *  N  K  G  R  D  *  R  K  F  Q  I  M  E  A  R  L  N  F  L  P  P  F  K  W  E  F  H  G  F  F  S  W  K  *  K  P  F  P  S  K  :  V  Y  C  G  D  G  *  H  I  L  H  L  F  W  W  F  R  Q  H  F  *  F  E  E  I  L  W  S  F  K  T  S  Y  R  S  Y  D  N  G  *  G  L  Q  S  F  K  G  S  G  A  I  P  S  *  S  S  H  Q  R  T  *  R  Q  I  C  F  H  S  L  *  L  *  S  L  H  S  F  S  C  *   : G  S  R  W  K  C  A  V  T  L  G  N  C  Y  R  W  I  I  S  M  F  *  *  F  R  V  H  S  S  F  L  W  E  I  V  Y  P  V  S  S  R :   L  Y  L  H  K  *  H  W  A  N  K  L  *  S  S  N  A  Q  S  K  R  N  C  A  *  R  *  *  R  K  C  Q  C  C  D  F  P  G  G  L  V  H  Q  T  P  Q  H  S  A  Q  G  K  C  C  E  L  G  W  C  Y  Y  G  *  M  K  R  K  I  *  N  F  D  D  L  P  K  L  S  H  Y  C  N  N  V  K  S  Q  T  V  C  Y  F  V  A  I  L  L  N  N  L  K  S  Y  V  A  A  I  I  I  F  P  S  S  I  D  C  F  L  L  N </second_frame>
            <third_frame>   A  F  S  I  *  T  K  L  S  W  L  L  S  S  I  Q  *  K  K  *  Y  S  *  F  K  T  S  M  F  D  F  L  D  F  Q  N  H  V  P  R  K  R  *  F  Y  L  Y  K  I  F  I  T  *  N  I  *  L  L  I  S  A  I  *  T  M  D  R  C  D  R  C  T  V  N  I  I  D  A  T  S  V  L  Y  F  R  L  Q  Q  S  F  G  *  A  S  Q  E  F  V  H  F  V  V  *  L  D  T  K  F  Y  L  F  F  I  F  F  E  I  C  N  L  Y  K  *  S  *  Y  C  C  C  C  W  E  F  Y  G  *  *  K  K  F  L  A  F  I  *  V  V  N  M  L  A  V  F  E  Q  S  I  G  K  P  P  S  E  L  S  V  A  Q  T  D  R  Q  K  K  E  A  K  T  K  E  E  I  E  E  S  F  K  S  W  K  P  D  S  T  F  Y  H  L  S  N  G  N  F  M  A  F  S  H  G  N  E  N  P  F  H  P  R :   S  I  V  V  M  D  D  I  F  C  I  F  S  G  G  L  D  N  T  F  D  L  R  K  Y  Y  G  L  S  R  Q  A  T  E  A  M  I  M  V  E  A  Y  K  V  L  R  D  R  A  P  Y  P  P  D  Q  V  I  K  E  L  E  G  K  F  A  F  I  L  F  D  Y  K  A  S  T  L  F  L  A  R  :  D  R  D  G  S  V  P  L  H  W  G  T  A  T  D  G  S  L  V  C  S  D  D  S  E  F  I  Q  A  S  C  G  K  L  Y  T  P  F  P  P   : G  C  I  F  I  S  D  T  G  L  I  S  F  D  H  P  M  H  K  V  K  G  I  A  R  E  D  D  E  G  N  V  N  A  V  I  F  Q  V  D  L  Y  T  K  L  H  S  I  P  R  R  G  S  A  A  N  W  A  G  A  T  T  V  E  *  N  G  R  F  E  T  L  T  I  F  P  S  *  V  I  I  V  I  M  L  N  H  K  R  Y  A  T  L  W  Q  S  C  *  I  I  *  N  H  M  L  L  Q  *  *  Y  F  H  H  Q  S  T  V  S  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39241" stop="39455"/>
                    <exon start="39660" stop="39900"/>
                    <exon start="40058" stop="40178"/>
                    <exon start="40264" stop="40457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVNMLAVFEQSIGKPPSELSVAQTDRQKKEAKTKEEIEESFKSWKPDSTFYHLSNGNFMAFSHGNENPFHPRSIVVMDDIFCIFSGGLDNTFDLRKYYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDYKASTLFLARDRDGSVPLHWGTATDGSLVCSDDSEFIQASCGKLYTPFPPGCIFISDTGLISFDHPMHKVKGIAREDDEGNVNAVIFQVDLYTKLHSIPRRGSAANWAGATTVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38804" e_stop="39455"/>
            <exon e_start="39660" e_stop="39900"/>
            <exon e_start="40058" e_stop="40618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.931" e_score="0.992"/>
          <exon-intron don_prob="0.954" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="38804" e_stop="39455" e_length="652"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.931">
            <gDNA_intron_boundary i_start="39456" i_stop="39659" i_length="204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39660" e_stop="39900" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39901" i_stop="40057" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40058" e_stop="40618" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38804" stop="39455"/>
              <exon start="39660" stop="39725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39455"/>
              <exon start="39660" stop="39836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39211" stop="39455"/>
              <exon start="39660" stop="39872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39212" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39213" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39215" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39219" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39231" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39252" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39265" stop="39455"/>
              <exon start="39660" stop="39862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39377" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39437" stop="39455"/>
              <exon start="39660" stop="39900"/>
              <exon start="40058" stop="40153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39729" stop="39900"/>
              <exon start="40058" stop="40178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39740" stop="39900"/>
              <exon start="40058" stop="40613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578421" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39763" stop="39900"/>
              <exon start="40058" stop="40618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40061" stop="40591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCCTTCAGTATTTAGACAAAACTTTCTTGGCTTCTTTCTTCTATACAATAAAAAAAATAATATTCCTAATTTAAAACAAGTATGTTTGATTTTCTGGATTTTCAAAACCATGTTCCAAGAAAAAGATAATTTTATTTATACAAAATTTTCATAACGTAAAATATTTAACTACTAATAAGTGCCATTTGAACAATGGATAGATGTGACAGATGTACTGTCAACATTATTGATGCCACGTCAGTACTTTATTTTCGGTTACAACAGTCATTTGGATAAGCATCTCAAGAGTTTGTACATTTCGTAGTTTGACTTGATACGAAATTTTATTTATTTTTTATTTTTTTTGAAATTTGTAATTTATATAAATAGTCATAATATTGTTGTTGCTGCTGGGAATTTTATGGTTAATGAAAAAAGTTTCTAGCTTTTATTTGAGTAGTAAACATGTTGGCTGTGTTTGAGCAATCTATTGGGAAGCCACCTTCAGAGCTGAGCGTTGCTCAGACAGATAGACAGAAAAAGGAGGCTAAAACAAAGGAAGAGATTGAAGAAAGTTTCAAATCATGGAAGCCAGACTCAACTTTTTACCACCTTTCAAATGGGAATTTCATGGCTTTTTCTCATGGAAATGAAAACCCTTTCCATCCAAG : GTCTATTGTGGTGATGGATGACATATTCTGCATCTTTTCTGGTGGTTTAGACAACACTTTTGATTTGAGGAAATATTATGGTCTTTCAAGACAAGCTACAGAAGCTATGATAATGGTTGAGGCTTACAAAGTTTTAAGGGATCGGGCGCCATACCCTCCTGATCAAGTCATCAAAGAACTTGAAGGCAAATTTGCTTTCATTCTCTTTGACTATAAAGCCTCCACTCTTTTTCTTGCTAGG : GATCGCGATGGAAGTGTGCCGTTACACTGGGGAACTGCTACAGATGGATCATTAGTATGTTCTGATGATTCAGAGTTCATTCAAGCTTCTTGTGGGAAATTGTATACCCCGTTTCCTCCAGGTTTCTTAATCAAATCCTCTTTTAAGTTTAATCTGATGTTTTTGGAGATCCAGCGGAATTCAATGTGTTAAAGCTGATTGTACAGGTTGTATCTTCATAAGTGACACTGGGCTAATAAGCTTTGATCATCCAATGCACAAAGTAAAAGGAATTGCGCGTGAAGATGATGAAGGAAATGTCAATGCTGTGATTTTCCAGGTGGACTTGTACACCAAACTCCACAGCATTCCGCGCAGGGGAAGTGCTGCGAATTGGGCTGGTGCTACTACGGTTGAATGAAACGGAAGATTTGAAACTTTGACGATCTTCCCAAGTTGAGTCATTATTGTAATAATGTTAAATCACAAACGGTATGCTACTTTGTGGCAATCTTGTTAAATAATCTGAAATCATATGTTGCTGCAATAATAATATTTCCATCATCAATCGACTGTTTCTTA</gDNA_template>
            <first_frame> Q  P  S  V  F  R  Q  N  F  L  G  F  F  L  L  Y  N  K  K  N  N  I  P  N  L  K  Q  V  C  L  I  F  W  I  F  K  T  M  F  Q  E  K  D  N  F  I  Y  T  K  F  S  *  R  K  I  F  N  Y  *  *  V  P  F  E  Q  W  I  D  V  T  D  V  L  S  T  L  L  M  P  R  Q  Y  F  I  F  G  Y  N  S  H  L  D  K  H  L  K  S  L  Y  I  S  *  F  D  L  I  R  N  F  I  Y  F  L  F  F  L  K  F  V  I  Y  I  N  S  H  N  I  V  V  A  A  G  N  F  M  V  N  E  K  S  F  *  L  L  F  E  *  *  T  C  W  L  C  L  S  N  L  L  G  S  H  L  Q  S  *  A  L  L  R  Q  I  D  R  K  R  R  L  K  Q  R  K  R  L  K  K  V  S  N  H  G  S  Q  T  Q  L  F  T  T  F  Q  M  G  I  S  W  L  F  L  M  E  M  K  T  L  S  I  Q   : G  L  L  W  *  W  M  T  Y  S  A  S  F  L  V  V  *  T  T  L  L  I  *  G  N  I  M  V  F  Q  D  K  L  Q  K  L  *  *  W  L  R  L  T  K  F  *  G  I  G  R  H  T  L  L  I  K  S  S  K  N  L  K  A  N  L  L  S  F  S  L  T  I  K  P  P  L  F  F  L  L  G :   I  A  M  E  V  C  R  Y  T  G  E  L  L  Q  M  D  H  *  Y  V  L  M  I  Q  S  S  F  K  L  L  V  G  N  C  I  P  R  F  L  Q  V  S  *  S  N  P  L  L  S  L  I  *  C  F  W  R  S  S  G  I  Q  C  V  K  A  D  C  T  G  C  I  F  I  S  D  T  G  L  I  S  F  D  H  P  M  H  K  V  K  G  I  A  R  E  D  D  E  G  N  V  N  A  V  I  F  Q  V  D  L  Y  T  K  L  H  S  I  P  R  R  G  S  A  A  N  W  A  G  A  T  T  V  E  *  N  G  R  F  E  T  L  T  I  F  P  S  *  V  I  I  V  I  M  L  N  H  K  R  Y  A  T  L  W  Q  S  C  *  I  I  *  N  H  M  L  L  Q  *  *  Y  F  H  H  Q  S  T  V  S   </first_frame>
            <second_frame>  S  L  Q  Y  L  D  K  T  F  L  A  S  F  F  Y  T  I  K  K  I  I  F  L  I  *  N  K  Y  V  *  F  S  G  F  S  K  P  C  S  K  K  K  I  I  L  F  I  Q  N  F  H  N  V  K  Y  L  T  T  N  K  C  H  L  N  N  G  *  M  *  Q  M  Y  C  Q  H  Y  *  C  H  V  S  T  L  F  S  V  T  T  V  I  W  I  S  I  S  R  V  C  T  F  R  S  L  T  *  Y  E  I  L  F  I  F  Y  F  F  *  N  L  *  F  I  *  I  V  I  I  L  L  L  L  L  G  I  L  W  L  M  K  K  V  S  S  F  Y  L  S  S  K  H  V  G  C  V  *  A  I  Y  W  E  A  T  F  R  A  E  R  C  S  D  R  *  T  E  K  G  G  *  N  K  G  R  D  *  R  K  F  Q  I  M  E  A  R  L  N  F  L  P  P  F  K  W  E  F  H  G  F  F  S  W  K  *  K  P  F  P  S  K  :  V  Y  C  G  D  G  *  H  I  L  H  L  F  W  W  F  R  Q  H  F  *  F  E  E  I  L  W  S  F  K  T  S  Y  R  S  Y  D  N  G  *  G  L  Q  S  F  K  G  S  G  A  I  P  S  *  S  S  H  Q  R  T  *  R  Q  I  C  F  H  S  L  *  L  *  S  L  H  S  F  S  C  *   : G  S  R  W  K  C  A  V  T  L  G  N  C  Y  R  W  I  I  S  M  F  *  *  F  R  V  H  S  S  F  L  W  E  I  V  Y  P  V  S  S  R  F  L  N  Q  I  L  F  *  V  *  S  D  V  F  G  D  P  A  E  F  N  V  L  K  L  I  V  Q  V  V  S  S  *  V  T  L  G  *  *  A  L  I  I  Q  C  T  K  *  K  E  L  R  V  K  M  M  K  E  M  S  M  L  *  F  S  R  W  T  C  T  P  N  S  T  A  F  R  A  G  E  V  L  R  I  G  L  V  L  L  R  L  N  E  T  E  D  L  K  L  *  R  S  S  Q  V  E  S  L  L  *  *  C  *  I  T  N  G  M  L  L  C  G  N  L  V  K  *  S  E  I  I  C  C  C  N  N  N  I  S  I  I  N  R  L  F  L  </second_frame>
            <third_frame>   A  F  S  I  *  T  K  L  S  W  L  L  S  S  I  Q  *  K  K  *  Y  S  *  F  K  T  S  M  F  D  F  L  D  F  Q  N  H  V  P  R  K  R  *  F  Y  L  Y  K  I  F  I  T  *  N  I  *  L  L  I  S  A  I  *  T  M  D  R  C  D  R  C  T  V  N  I  I  D  A  T  S  V  L  Y  F  R  L  Q  Q  S  F  G  *  A  S  Q  E  F  V  H  F  V  V  *  L  D  T  K  F  Y  L  F  F  I  F  F  E  I  C  N  L  Y  K  *  S  *  Y  C  C  C  C  W  E  F  Y  G  *  *  K  K  F  L  A  F  I  *  V  V  N  M  L  A  V  F  E  Q  S  I  G  K  P  P  S  E  L  S  V  A  Q  T  D  R  Q  K  K  E  A  K  T  K  E  E  I  E  E  S  F  K  S  W  K  P  D  S  T  F  Y  H  L  S  N  G  N  F  M  A  F  S  H  G  N  E  N  P  F  H  P  R :   S  I  V  V  M  D  D  I  F  C  I  F  S  G  G  L  D  N  T  F  D  L  R  K  Y  Y  G  L  S  R  Q  A  T  E  A  M  I  M  V  E  A  Y  K  V  L  R  D  R  A  P  Y  P  P  D  Q  V  I  K  E  L  E  G  K  F  A  F  I  L  F  D  Y  K  A  S  T  L  F  L  A  R  :  D  R  D  G  S  V  P  L  H  W  G  T  A  T  D  G  S  L  V  C  S  D  D  S  E  F  I  Q  A  S  C  G  K  L  Y  T  P  F  P  P  G  F  L  I  K  S  S  F  K  F  N  L  M  F  L  E  I  Q  R  N  S  M  C  *  S  *  L  Y  R  L  Y  L  H  K  *  H  W  A  N  K  L  *  S  S  N  A  Q  S  K  R  N  C  A  *  R  *  *  R  K  C  Q  C  C  D  F  P  G  G  L  V  H  Q  T  P  Q  H  S  A  Q  G  K  C  C  E  L  G  W  C  Y  Y  G  *  M  K  R  K  I  *  N  F  D  D  L  P  K  L  S  H  Y  C  N  N  V  K  S  Q  T  V  C  Y  F  V  A  I  L  L  N  N  L  K  S  Y  V  A  A  I  I  I  F  P  S  S  I  D  C  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39241" stop="39455"/>
                    <exon start="39660" stop="39900"/>
                    <exon start="40058" stop="40249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVNMLAVFEQSIGKPPSELSVAQTDRQKKEAKTKEEIEESFKSWKPDSTFYHLSNGNFMAFSHGNENPFHPRSIVVMDDIFCIFSGGLDNTFDLRKYYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDYKASTLFLARDRDGSVPLHWGTATDGSLVCSDDSEFIQASCGKLYTPFPPGFLIKSSFKFNLMFLEIQRNSMC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42219" PGL_stop="41092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42219" e_stop="41092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="42219" e_stop="41092" e_length="1128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42219" stop="41596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42219" stop="41951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42215" stop="41696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41884" stop="41312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41882" stop="41565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41665" stop="41114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41665" stop="41115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41402" stop="41115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41391" stop="41115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41387" stop="41092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41356" stop="41094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCAAATCAAAGTCTTTTTCTTAAATAAACTTAGCTAAAATGGCAGCTCCAACATGTTTGAACATTTGTTTTATGGTTTTGCTAAGCTTAGCAATATGCTCTGCCCAGCCTATTGAAGTTGATCATCATCACAACCACAAAGCTCACGCTTTGAGTAATATCGGAGGAGGCAGTGATGGCGGATTAGGCATTGGTGGTGGTGGAGGTGGATTTGGCATTGGCTTTGGTGTTGGTGTTGGCGTTGGTGGTGGAAGATTTGGGTTTGGCATTGGTGGAGGTGTCCCTGGTTATATACCTGGCTTTGATTTCCCAGTCTATTCCCCTGATTGTGGTTATGTGTGTCTTGTTAATAATCCTAGTGGAGAAGTCACAGAATTCAAAATCTCAGGATTATCACACTTCACCAAACCATACAGATGCAAACCAGGACCAAACATGCGCGGAGACAAAGATTTTAACCATGAACTTCTTCTAAACTTTGTTTCTACAATGCTGGACAAACAACAACATCTACACAGTGGAGATGTAGGTCACCATGTAGGGGGAGCTAGACGTTTAGGATTTGGTCGTGGAAGTAGCAGAGGAACAGGTGGTTCTGATACCTCTGATCAGTATGCTACTGAGGACCCCGGTTGGAGTATTGAGGGATGTGGTTATGTATGTCCAGGCAACAGTCCTAGTGGAGGACTCACTGAATTCCATATCTCAGGAATATCACATTTCAGTGAACCTTACAGATGTAGCCCAGATGTATGTGACACTGAAGAATGTGGTGAGTTTCTTCTACGCTTTGTTTCTCCAATGCATAACAAACACGAGAACCAACATGGTCATCAGTCAGAGCAGCAAGACAAGCATGAGAACAAACACGGTCATCAGTTAGACCAGCACGACACACATGAGAACCAACATGGTCATCAATCAGAGAAGCAAGAGGAAGATATCACAAACAATATCCCCGACCCACCCACACCCCAATCCTGAATCCAAGAAAAAGAAACTTAATATGTAATAATGTTATGTAGCTTCAGCCAAAAAACAGTATATACTGTCTAAGAAGCTAACTATTTACAAGGAACTTAATAAAACTTGTTTTAGTTGAATTGATTTGATCACACTAAAAGA</gDNA_template>
            <first_frame> I  I  K  S  K  S  F  S  *  I  N  L  A  K  M  A  A  P  T  C  L  N  I  C  F  M  V  L  L  S  L  A  I  C  S  A  Q  P  I  E  V  D  H  H  H  N  H  K  A  H  A  L  S  N  I  G  G  G  S  D  G  G  L  G  I  G  G  G  G  G  G  F  G  I  G  F  G  V  G  V  G  V  G  G  G  R  F  G  F  G  I  G  G  G  V  P  G  Y  I  P  G  F  D  F  P  V  Y  S  P  D  C  G  Y  V  C  L  V  N  N  P  S  G  E  V  T  E  F  K  I  S  G  L  S  H  F  T  K  P  Y  R  C  K  P  G  P  N  M  R  G  D  K  D  F  N  H  E  L  L  L  N  F  V  S  T  M  L  D  K  Q  Q  H  L  H  S  G  D  V  G  H  H  V  G  G  A  R  R  L  G  F  G  R  G  S  S  R  G  T  G  G  S  D  T  S  D  Q  Y  A  T  E  D  P  G  W  S  I  E  G  C  G  Y  V  C  P  G  N  S  P  S  G  G  L  T  E  F  H  I  S  G  I  S  H  F  S  E  P  Y  R  C  S  P  D  V  C  D  T  E  E  C  G  E  F  L  L  R  F  V  S  P  M  H  N  K  H  E  N  Q  H  G  H  Q  S  E  Q  Q  D  K  H  E  N  K  H  G  H  Q  L  D  Q  H  D  T  H  E  N  Q  H  G  H  Q  S  E  K  Q  E  E  D  I  T  N  N  I  P  D  P  P  T  P  Q  S  *  I  Q  E  K  E  T  *  Y  V  I  M  L  C  S  F  S  Q  K  T  V  Y  T  V  *  E  A  N  Y  L  Q  G  T  *  *  N  L  F  *  L  N  *  F  D  H  T  K  R </first_frame>
            <second_frame>  *  S  N  Q  S  L  F  L  K  *  T  *  L  K  W  Q  L  Q  H  V  *  T  F  V  L  W  F  C  *  A  *  Q  Y  A  L  P  S  L  L  K  L  I  I  I  T  T  T  K  L  T  L  *  V  I  S  E  E  A  V  M  A  D  *  A  L  V  V  V  E  V  D  L  A  L  A  L  V  L  V  L  A  L  V  V  E  D  L  G  L  A  L  V  E  V  S  L  V  I  Y  L  A  L  I  S  Q  S  I  P  L  I  V  V  M  C  V  L  L  I  I  L  V  E  K  S  Q  N  S  K  S  Q  D  Y  H  T  S  P  N  H  T  D  A  N  Q  D  Q  T  C  A  E  T  K  I  L  T  M  N  F  F  *  T  L  F  L  Q  C  W  T  N  N  N  I  Y  T  V  E  M  *  V  T  M  *  G  E  L  D  V  *  D  L  V  V  E  V  A  E  E  Q  V  V  L  I  P  L  I  S  M  L  L  R  T  P  V  G  V  L  R  D  V  V  M  Y  V  Q  A  T  V  L  V  E  D  S  L  N  S  I  S  Q  E  Y  H  I  S  V  N  L  T  D  V  A  Q  M  Y  V  T  L  K  N  V  V  S  F  F  Y  A  L  F  L  Q  C  I  T  N  T  R  T  N  M  V  I  S  Q  S  S  K  T  S  M  R  T  N  T  V  I  S  *  T  S  T  T  H  M  R  T  N  M  V  I  N  Q  R  S  K  R  K  I  S  Q  T  I  S  P  T  H  P  H  P  N  P  E  S  K  K  K  K  L  N  M  *  *  C  Y  V  A  S  A  K  K  Q  Y  I  L  S  K  K  L  T  I  Y  K  E  L  N  K  T  C  F  S  *  I  D  L  I  T  L  K   </second_frame>
            <third_frame>   N  Q  I  K  V  F  F  L  N  K  L  S  *  N  G  S  S  N  M  F  E  H  L  F  Y  G  F  A  K  L  S  N  M  L  C  P  A  Y  *  S  *  S  S  S  Q  P  Q  S  S  R  F  E  *  Y  R  R  R  Q  *  W  R  I  R  H  W  W  W  W  R  W  I  W  H  W  L  W  C  W  C  W  R  W  W  W  K  I  W  V  W  H  W  W  R  C  P  W  L  Y  T  W  L  *  F  P  S  L  F  P  *  L  W  L  C  V  S  C  *  *  S  *  W  R  S  H  R  I  Q  N  L  R  I  I  T  L  H  Q  T  I  Q  M  Q  T  R  T  K  H  A  R  R  Q  R  F  *  P  *  T  S  S  K  L  C  F  Y  N  A  G  Q  T  T  T  S  T  Q  W  R  C  R  S  P  C  R  G  S  *  T  F  R  I  W  S  W  K  *  Q  R  N  R  W  F  *  Y  L  *  S  V  C  Y  *  G  P  R  L  E  Y  *  G  M  W  L  C  M  S  R  Q  Q  S  *  W  R  T  H  *  I  P  Y  L  R  N  I  T  F  Q  *  T  L  Q  M  *  P  R  C  M  *  H  *  R  M  W  *  V  S  S  T  L  C  F  S  N  A  *  Q  T  R  E  P  T  W  S  S  V  R  A  A  R  Q  A  *  E  Q  T  R  S  S  V  R  P  A  R  H  T  *  E  P  T  W  S  S  I  R  E  A  R  G  R  Y  H  K  Q  Y  P  R  P  T  H  T  P  I  L  N  P  R  K  R  N  L  I  C  N  N  V  M  *  L  Q  P  K  N  S  I  Y  C  L  R  S  *  L  F  T  R  N  L  I  K  L  V  L  V  E  L  I  *  S  H  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42192" stop="41233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLAKMAAPTCLNICFMVLLSLAICSAQPIEVDHHHNHKAHALSNIGGGSDGGLGIGGGGGGFGIGFGVGVGVGGGRFGFGIGGGVPGYIPGFDFPVYSPDCGYVCLVNNPSGEVTEFKISGLSHFTKPYRCKPGPNMRGDKDFNHELLLNFVSTMLDKQQHLHSGDVGHHVGGARRLGFGRGSSRGTGGSDTSDQYATEDPGWSIEGCGYVCPGNSPSGGLTEFHISGISHFSEPYRCSPDVCDTEECGEFLLRFVSPMHNKHENQHGHQSEQQDKHENKHGHQLDQHDTHENQHGHQSEKQEEDITNNIPDPPTPQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="41408" PGL_stop="41745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41408" e_stop="41745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41408" e_stop="41745" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41408" stop="41745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGCATTGGAGAAACAAAGCGTAGAAGAAACTCACCACATTCTTCAGTGTCACATACATCTGGGCTACATCTGTAAGGTTCACTGAAATGTGATATTCCTGAGATATGGAATTCAGTGAGTCCTCCACTAGGACTGTTGCCTGGACATACATAACCACATCCCTCAATACTCCAACCGGGGTCCTCAGTAGCATACTGATCAGAGGTATCAGAACCACCTGTTCCTCTGCTACTTCCACGACCAAATCCTAAACGTCTAGCTCCCCCTACATGGTGACCTACATCTCCACTGTGTAGATGTTGTTGTTTGTCCAGCATTGTAGAAACAAAGTTTAG</gDNA_template>
            <first_frame> L  C  I  G  E  T  K  R  R  R  N  S  P  H  S  S  V  S  H  T  S  G  L  H  L  *  G  S  L  K  C  D  I  P  E  I  W  N  S  V  S  P  P  L  G  L  L  P  G  H  T  *  P  H  P  S  I  L  Q  P  G  S  S  V  A  Y  *  S  E  V  S  E  P  P  V  P  L  L  L  P  R  P  N  P  K  R  L  A  P  P  T  W  *  P  T  S  P  L  C  R  C  C  C  L  S  S  I  V  E  T  K  F   </first_frame>
            <second_frame>  Y  A  L  E  K  Q  S  V  E  E  T  H  H  I  L  Q  C  H  I  H  L  G  Y  I  C  K  V  H  *  N  V  I  F  L  R  Y  G  I  Q  *  V  L  H  *  D  C  C  L  D  I  H  N  H  I  P  Q  Y  S  N  R  G  P  Q  *  H  T  D  Q  R  Y  Q  N  H  L  F  L  C  Y  F  H  D  Q  I  L  N  V  *  L  P  L  H  G  D  L  H  L  H  C  V  D  V  V  V  C  P  A  L  *  K  Q  S  L  </second_frame>
            <third_frame>   M  H  W  R  N  K  A  *  K  K  L  T  T  F  F  S  V  T  Y  I  W  A  T  S  V  R  F  T  E  M  *  Y  S  *  D  M  E  F  S  E  S  S  T  R  T  V  A  W  T  Y  I  T  T  S  L  N  T  P  T  G  V  L  S  S  I  L  I  R  G  I  R  T  T  C  S  S  A  T  S  T  T  K  S  *  T  S  S  S  P  Y  M  V  T  Y  I  S  T  V  *  M  L  L  F  V  Q  H  C  R  N  K  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0005F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="45454" PGL_stop="50027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45454" e_stop="45723"/>
            <exon e_start="47896" e_stop="47970"/>
            <exon e_start="49528" e_stop="50027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45454" e_stop="45723" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45724" i_stop="47895" i_length="2172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47896" e_stop="47970" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47971" i_stop="49527" i_length="1557"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="49528" e_stop="50027" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45454" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45504" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45504" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45505" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45518" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45560" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="50027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45560" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45565" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45569" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45650" stop="45723"/>
              <exon start="47896" stop="47970"/>
              <exon start="49528" stop="49998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49528" stop="49968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49704" stop="49945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAGCATAAAAGAGGAGAAATTTCGTATTGTTCTTTGAGGGTATTTACTTCACTTCTCATTGAGAAATAGAGAATCTGAAAGAATCGAGAATGGGCGGAGGAGGATCAGTGAAGGAAGTTCAATCGAAGGCGGAGCTTGATAAGATTGTCGCCGACGGATCACCGGCGATTTTGCACTTTTGGGCATCATGGTGTGAAGCTTCTAAGCACATGGACCAAGTCTTTTCGCATCTTTCTACTGATTTCCCACATGCCCATTTTCTAAGA : GTTGAAGCTGAAGAACAGCCTGAGATATCTGAGCTGCACTCTGTTTCTGCTGTACCTTACTTTGTCTTCTTCAAG : GAAGGGAAAGCTGTTGATACATTGGAAGGGGCCGATCCATCTAGTTTGGCTAACAAGGTTGCAAAAATTGCTGGGTCAATCACTCCTGGGGATCCTGCCGCTCCTGCTAGCCTAGGAATGGCTGCAGGTCCCTCTGTTCTTGAAGCAATTCAGGAGTTGTCTAGAGAAAACGGTGCCCCTCAAGTGTCAAGTTCTGGTCTTGATGATCGGCTAACAAAGCGACTTCAGCAGCTGGTTTCTTCTCATCCAGTATTGCTTTTCATGAAAGGGACCCCAGAAGAACCCAAGTGTGGTTTTAGTCAGAAAGTCGTTGATATCTTGAAGAAAGAGAAGGTCAAATTTGGAAGTTTTGATATTCTGATGGACAGTGAGGTCCGTGAGGGTCTGAAGAAATTTTCCAATTGGCCAACATATCCTCAACTGTACTGCAAGGGTGAACTTCTTGGTGGTTGTGATATTGTTATAACTATGCATGAGAGTGGTGAACTTACAGATGTTTT</gDNA_template>
            <first_frame> K  T  A  *  K  R  R  N  F  V  L  F  F  E  G  I  Y  F  T  S  H  *  E  I  E  N  L  K  E  S  R  M  G  G  G  G  S  V  K  E  V  Q  S  K  A  E  L  D  K  I  V  A  D  G  S  P  A  I  L  H  F  W  A  S  W  C  E  A  S  K  H  M  D  Q  V  F  S  H  L  S  T  D  F  P  H  A  H  F  L  R  :  V  E  A  E  E  Q  P  E  I  S  E  L  H  S  V  S  A  V  P  Y  F  V  F  F  K  :  E  G  K  A  V  D  T  L  E  G  A  D  P  S  S  L  A  N  K  V  A  K  I  A  G  S  I  T  P  G  D  P  A  A  P  A  S  L  G  M  A  A  G  P  S  V  L  E  A  I  Q  E  L  S  R  E  N  G  A  P  Q  V  S  S  S  G  L  D  D  R  L  T  K  R  L  Q  Q  L  V  S  S  H  P  V  L  L  F  M  K  G  T  P  E  E  P  K  C  G  F  S  Q  K  V  V  D  I  L  K  K  E  K  V  K  F  G  S  F  D  I  L  M  D  S  E  V  R  E  G  L  K  K  F  S  N  W  P  T  Y  P  Q  L  Y  C  K  G  E  L  L  G  G  C  D  I  V  I  T  M  H  E  S  G  E  L  T  D  V   </first_frame>
            <second_frame>  K  Q  H  K  R  G  E  I  S  Y  C  S  L  R  V  F  T  S  L  L  I  E  K  *  R  I  *  K  N  R  E  W  A  E  E  D  Q  *  R  K  F  N  R  R  R  S  L  I  R  L  S  P  T  D  H  R  R  F  C  T  F  G  H  H  G  V  K  L  L  S  T  W  T  K  S  F  R  I  F  L  L  I  S  H  M  P  I  F  *  E :   L  K  L  K  N  S  L  R  Y  L  S  C  T  L  F  L  L  Y  L  T  L  S  S  S  R :   K  G  K  L  L  I  H  W  K  G  P  I  H  L  V  W  L  T  R  L  Q  K  L  L  G  Q  S  L  L  G  I  L  P  L  L  L  A  *  E  W  L  Q  V  P  L  F  L  K  Q  F  R  S  C  L  E  K  T  V  P  L  K  C  Q  V  L  V  L  M  I  G  *  Q  S  D  F  S  S  W  F  L  L  I  Q  Y  C  F  S  *  K  G  P  Q  K  N  P  S  V  V  L  V  R  K  S  L  I  S  *  R  K  R  R  S  N  L  E  V  L  I  F  *  W  T  V  R  S  V  R  V  *  R  N  F  P  I  G  Q  H  I  L  N  C  T  A  R  V  N  F  L  V  V  V  I  L  L  *  L  C  M  R  V  V  N  L  Q  M  F  </second_frame>
            <third_frame>   N  S  I  K  E  E  K  F  R  I  V  L  *  G  Y  L  L  H  F  S  L  R  N  R  E  S  E  R  I  E  N  G  R  R  R  I  S  E  G  S  S  I  E  G  G  A  *  *  D  C  R  R  R  I  T  G  D  F  A  L  L  G  I  M  V  *  S  F  *  A  H  G  P  S  L  F  A  S  F  Y  *  F  P  T  C  P  F  S  K   : S  *  S  *  R  T  A  *  D  I  *  A  A  L  C  F  C  C  T  L  L  C  L  L  Q   : G  R  E  S  C  *  Y  I  G  R  G  R  S  I  *  F  G  *  Q  G  C  K  N  C  W  V  N  H  S  W  G  S  C  R  S  C  *  P  R  N  G  C  R  S  L  C  S  *  S  N  S  G  V  V  *  R  K  R  C  P  S  S  V  K  F  W  S  *  *  S  A  N  K  A  T  S  A  A  G  F  F  S  S  S  I  A  F  H  E  R  D  P  R  R  T  Q  V  W  F  *  S  E  S  R  *  Y  L  E  E  R  E  G  Q  I  W  K  F  *  Y  S  D  G  Q  *  G  P  *  G  S  E  E  I  F  Q  L  A  N  I  S  S  T  V  L  Q  G  *  T  S  W  W  L  *  Y  C  Y  N  Y  A  *  E  W  *  T  Y  R  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45520" stop="45723"/>
                    <exon start="47896" stop="47970"/>
                    <exon start="49528" stop="50025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIENLKESRMGGGGSVKEVQSKAELDKIVADGSPAILHFWASWCEASKHMDQVFSHLSTDFPHAHFLRVEAEEQPEISELHSVSAVPYFVFFKEGKAVDTLEGADPSSLANKVAKIAGSITPGDPAAPASLGMAAGPSVLEAIQELSRENGAPQVSSSGLDDRLTKRLQQLVSSHPVLLFMKGTPEEPKCGFSQKVVDILKKEKVKFGSFDILMDSEVREGLKKFSNWPTYPQLYCKGELLGGCDIVITMHESGELTDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="50122" PGL_stop="51029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50122" e_stop="51029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="50122" e_stop="51029" e_length="908"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50122" stop="50955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50122" stop="50938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50300" stop="50902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50412" stop="51020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50417" stop="51029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50417" stop="51028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50417" stop="51027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTACTGCCTTGACTACTCGTCTTGCAGGTCTGATAAACTCTAGCCCAGTTATGCTGTTTATGAAAGGAACAGTTGATGAACCCCGGTGTGGATTCAGCAGAAAGGTGGTGGATATTCTCAAACAGGAGAAAGTGGAGTTTGAGACTTTTGACATTCTTTCTGATGATGAAGTCCGTCAAGGACTGAAAGTTTATTCCAACTGGTCTAGTTATCCACAGCTGTACATAAAGGGTGAACTTATTGGTGGATCAGACATTGTACTGGAGATGCAAAAGAGCGGTGAGTTTAGGAAGGTTCTGACTGAGAAGGGGATACACCAGAAAGTTAGTCTTGAAGACCGTTTAAAGAATCTACTGAATTCCTCACCTGTAATGCTCTTCATGAAGGGTACACCAGATTCTCCAAGATGTGGTTTCAGCTCCAAGGTGGTAAATGCCTTGAAGGAGGAAGGGGTTGATTTTGGATCCTTTGATATTCTATCCGACGAAGAAGTAAGGCAGGGACTGAAGACCTTCTCTAACTGGCCAACTTATCCGCAGCTGTATTACAAAGGCGAACTTGTAGGAGGATGTGATATCGTGCTGGAATTACATAGCGGGGGTGAATTGAAGTCAACATTATCTGAATAGAAGAACCCCCAACCAGTCCAGGTTGCGCGTATCAGACATAACATGTTAGCTGTGAGGCCTTACATGTTGTGTCGACGTGATTTTGATGGTATTTGAACAAGAATTTCATGTTATGAGAGCAGCACTTTTAGAGATGGTTACTGTTACTCTAGTCTCTAATTTGTCTGAGTCCTGAGTTTGATATTTATTCAGTGTCATGAATTATGTATGCTTCTGTAGAGGACCTTATTTTTCTTATCTTAGTTTGCCTATGGTTGATTCTGCTTTCCATAACTTCT</gDNA_template>
            <first_frame> S  T  A  L  T  T  R  L  A  G  L  I  N  S  S  P  V  M  L  F  M  K  G  T  V  D  E  P  R  C  G  F  S  R  K  V  V  D  I  L  K  Q  E  K  V  E  F  E  T  F  D  I  L  S  D  D  E  V  R  Q  G  L  K  V  Y  S  N  W  S  S  Y  P  Q  L  Y  I  K  G  E  L  I  G  G  S  D  I  V  L  E  M  Q  K  S  G  E  F  R  K  V  L  T  E  K  G  I  H  Q  K  V  S  L  E  D  R  L  K  N  L  L  N  S  S  P  V  M  L  F  M  K  G  T  P  D  S  P  R  C  G  F  S  S  K  V  V  N  A  L  K  E  E  G  V  D  F  G  S  F  D  I  L  S  D  E  E  V  R  Q  G  L  K  T  F  S  N  W  P  T  Y  P  Q  L  Y  Y  K  G  E  L  V  G  G  C  D  I  V  L  E  L  H  S  G  G  E  L  K  S  T  L  S  E  *  K  N  P  Q  P  V  Q  V  A  R  I  R  H  N  M  L  A  V  R  P  Y  M  L  C  R  R  D  F  D  G  I  *  T  R  I  S  C  Y  E  S  S  T  F  R  D  G  Y  C  Y  S  S  L  *  F  V  *  V  L  S  L  I  F  I  Q  C  H  E  L  C  M  L  L  *  R  T  L  F  F  L  S  *  F  A  Y  G  *  F  C  F  P  *  L   </first_frame>
            <second_frame>  V  L  P  *  L  L  V  L  Q  V  *  *  T  L  A  Q  L  C  C  L  *  K  E  Q  L  M  N  P  G  V  D  S  A  E  R  W  W  I  F  S  N  R  R  K  W  S  L  R  L  L  T  F  F  L  M  M  K  S  V  K  D  *  K  F  I  P  T  G  L  V  I  H  S  C  T  *  R  V  N  L  L  V  D  Q  T  L  Y  W  R  C  K  R  A  V  S  L  G  R  F  *  L  R  R  G  Y  T  R  K  L  V  L  K  T  V  *  R  I  Y  *  I  P  H  L  *  C  S  S  *  R  V  H  Q  I  L  Q  D  V  V  S  A  P  R  W  *  M  P  *  R  R  K  G  L  I  L  D  P  L  I  F  Y  P  T  K  K  *  G  R  D  *  R  P  S  L  T  G  Q  L  I  R  S  C  I  T  K  A  N  L  *  E  D  V  I  S  C  W  N  Y  I  A  G  V  N  *  S  Q  H  Y  L  N  R  R  T  P  N  Q  S  R  L  R  V  S  D  I  T  C  *  L  *  G  L  T  C  C  V  D  V  I  L  M  V  F  E  Q  E  F  H  V  M  R  A  A  L  L  E  M  V  T  V  T  L  V  S  N  L  S  E  S  *  V  *  Y  L  F  S  V  M  N  Y  V  C  F  C  R  G  P  Y  F  S  Y  L  S  L  P  M  V  D  S  A  F  H  N  F  </second_frame>
            <third_frame>   Y  C  L  D  Y  S  S  C  R  S  D  K  L  *  P  S  Y  A  V  Y  E  R  N  S  *  *  T  P  V  W  I  Q  Q  K  G  G  G  Y  S  Q  T  G  E  S  G  V  *  D  F  *  H  S  F  *  *  *  S  P  S  R  T  E  S  L  F  Q  L  V  *  L  S  T  A  V  H  K  G  *  T  Y  W  W  I  R  H  C  T  G  D  A  K  E  R  *  V  *  E  G  S  D  *  E  G  D  T  P  E  S  *  S  *  R  P  F  K  E  S  T  E  F  L  T  C  N  A  L  H  E  G  Y  T  R  F  S  K  M  W  F  Q  L  Q  G  G  K  C  L  E  G  G  R  G  *  F  W  I  L  *  Y  S  I  R  R  R  S  K  A  G  T  E  D  L  L  *  L  A  N  L  S  A  A  V  L  Q  R  R  T  C  R  R  M  *  Y  R  A  G  I  T  *  R  G  *  I  E  V  N  I  I  *  I  E  E  P  P  T  S  P  G  C  A  Y  Q  T  *  H  V  S  C  E  A  L  H  V  V  S  T  *  F  *  W  Y  L  N  K  N  F  M  L  *  E  Q  H  F  *  R  W  L  L  L  L  *  S  L  I  C  L  S  P  E  F  D  I  Y  S  V  S  *  I  M  Y  A  S  V  E  D  L  I  F  L  I  L  V  C  L  W  L  I  L  L  S  I  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50122" stop="50751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STALTTRLAGLINSSPVMLFMKGTVDEPRCGFSRKVVDILKQEKVEFETFDILSDDEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGEFRKVLTEKGIHQKVSLEDRLKNLLNSSPVMLFMKGTPDSPRCGFSSKVVNALKEEGVDFGSFDILSDEEVRQGLKTFSNWPTYPQLYYKGELVGGCDIVLELHSGGELKSTLSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="52775" PGL_stop="52181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52775" e_stop="52181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52775" e_stop="52181" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52775" stop="52181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCATACTCATGAATCAGTTGATACATCCGACCTTCCTTTATTTTCTGTGGATTATCTCCAACTTCTCCCACATTTCCTTTGTAGTCTTACATCTATAGGTGTTTTTGAACTCTTCCATGCTCAAAGCACAGTAAAGTATGTGTTTGGCTCTAGCATTGGTTTGCAGGACATCCATTTGTTCTCTTGTATAGGATGCCTCGTCGTCATGTTCCTTTCCTTCCTGATCACCAGGAATTGGTAGTGGTCCGTTCTGTATGATTAGCCATGATTGAAGGTCAACTGATTGCACATACACACTCATTCTAGCCTTCCAATGACGATAATGTTTCCCATCGAAGTATTGTGGCCTTGAATCTTCTTCTTCTGGTTGAAGATATCCTTCTGCAATGTGATAACTAGCCATTGGTGTTTTCTCACTTTCTGCTATGCAAAAACAAACTTGTCAGAGGCTTAAGAAAATATGCTGGAACATAAGTCGAATGTTCCAATGGCAGTCACAATTATATTATATATATACAAAATATGATTTTAAATTGGAAAAATTATGTGGTTAAGCAATCTTATACTACTTAATCGGTAGTTATATCTATAGC</gDNA_template>
            <first_frame> Y  H  T  H  E  S  V  D  T  S  D  L  P  L  F  S  V  D  Y  L  Q  L  L  P  H  F  L  C  S  L  T  S  I  G  V  F  E  L  F  H  A  Q  S  T  V  K  Y  V  F  G  S  S  I  G  L  Q  D  I  H  L  F  S  C  I  G  C  L  V  V  M  F  L  S  F  L  I  T  R  N  W  *  W  S  V  L  Y  D  *  P  *  L  K  V  N  *  L  H  I  H  T  H  S  S  L  P  M  T  I  M  F  P  I  E  V  L  W  P  *  I  F  F  F  W  L  K  I  S  F  C  N  V  I  T  S  H  W  C  F  L  T  F  C  Y  A  K  T  N  L  S  E  A  *  E  N  M  L  E  H  K  S  N  V  P  M  A  V  T  I  I  L  Y  I  Y  K  I  *  F  *  I  G  K  I  M  W  L  S  N  L  I  L  L  N  R  *  L  Y  L  *  </first_frame>
            <second_frame>  I  I  L  M  N  Q  L  I  H  P  T  F  L  Y  F  L  W  I  I  S  N  F  S  H  I  S  F  V  V  L  H  L  *  V  F  L  N  S  S  M  L  K  A  Q  *  S  M  C  L  A  L  A  L  V  C  R  T  S  I  C  S  L  V  *  D  A  S  S  S  C  S  F  P  S  *  S  P  G  I  G  S  G  P  F  C  M  I  S  H  D  *  R  S  T  D  C  T  Y  T  L  I  L  A  F  Q  *  R  *  C  F  P  S  K  Y  C  G  L  E  S  S  S  S  G  *  R  Y  P  S  A  M  *  *  L  A  I  G  V  F  S  L  S  A  M  Q  K  Q  T  C  Q  R  L  K  K  I  C  W  N  I  S  R  M  F  Q  W  Q  S  Q  L  Y  Y  I  Y  T  K  Y  D  F  K  L  E  K  L  C  G  *  A  I  L  Y  Y  L  I  G  S  Y  I  Y  S </second_frame>
            <third_frame>   S  Y  S  *  I  S  *  Y  I  R  P  S  F  I  F  C  G  L  S  P  T  S  P  T  F  P  L  *  S  Y  I  Y  R  C  F  *  T  L  P  C  S  K  H  S  K  V  C  V  W  L  *  H  W  F  A  G  H  P  F  V  L  L  Y  R  M  P  R  R  H  V  P  F  L  P  D  H  Q  E  L  V  V  V  R  S  V  *  L  A  M  I  E  G  Q  L  I  A  H  T  H  S  F  *  P  S  N  D  D  N  V  S  H  R  S  I  V  A  L  N  L  L  L  L  V  E  D  I  L  L  Q  C  D  N  *  P  L  V  F  S  H  F  L  L  C  K  N  K  L  V  R  G  L  R  K  Y  A  G  T  *  V  E  C  S  N  G  S  H  N  Y  I  I  Y  I  Q  N  M  I  L  N  W  K  N  Y  V  V  K  Q  S  Y  T  T  *  S  V  V  I  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52775" stop="52533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHTHESVDTSDLPLFSVDYLQLLPHFLCSLTSIGVFELFHAQSTVKYVFGSSIGLQDIHLFSCIGCLVVMFLSFLITRNW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="59182" PGL_stop="56757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59182" e_stop="58905"/>
            <exon e_start="57171" e_stop="56757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.939"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="59182" e_stop="58905" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58904" i_stop="57172" i_length="1733"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="57171" e_stop="56757" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59182" stop="58905"/>
              <exon start="57171" stop="56757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTGCTATGGCCACAGATGATAATCGGAATATCCATCGGAAAATCGGACGGTCGACGACGAGAACCAAGTGTCCGGCGCCGTTCTTATCGAAAACTTACGATCTTTTGGAGGAGCAAGAAGAAGAAAATAGTAATCGTAATATTAAGGTTGTTTCATGGAATGGTGAAGGAAATGGATTTGTTGTGTGGTGTCCAGATGAGTTTTCTGAGGTTATGTTACCTAAATACTTCAAGCACAACAATTTCTCTAGTTTCATTCGTCAACTTAATACCTAC : GGATTCAAGAAAGTAGCATCAAAACGTTGGGAATTTCATCATGGAAAGTTCCAGAAAGGGTGTAGACATTTGCTAGCAGAAATAACAAGAAAGAAATGTGAGCCAAGTGTATTTCCTACATACTTAAATCCTTCTAAAAAGAGCACATTATTATTAGCTACAAATAATAATGATCAAGAGAATACAATTACAAGGCAACATCTCATGGAAGAGAATCAAAACTTGAAAAAGGAAAGAATGGAATTGCAAATGCAAATTGCACATTTCAAAACATTGGAAATGAAGTTGTTGCAATGCCTTTCTCAATGTGTGGAAAATCCACATAACAAAACTAGAAGGTTGTTTTAGATTGATACGAGTGTTTTGTATATCAAACTGTTTTTTTTTCCCTTCTGAATCATACATGTATAATTAT</gDNA_template>
            <first_frame> I  L  L  W  P  Q  M  I  I  G  I  S  I  G  K  S  D  G  R  R  R  E  P  S  V  R  R  R  S  Y  R  K  L  T  I  F  W  R  S  K  K  K  K  I  V  I  V  I  L  R  L  F  H  G  M  V  K  E  M  D  L  L  C  G  V  Q  M  S  F  L  R  L  C  Y  L  N  T  S  S  T  T  I  S  L  V  S  F  V  N  L  I  P  T :   D  S  R  K  *  H  Q  N  V  G  N  F  I  M  E  S  S  R  K  G  V  D  I  C  *  Q  K  *  Q  E  R  N  V  S  Q  V  Y  F  L  H  T  *  I  L  L  K  R  A  H  Y  Y  *  L  Q  I  I  M  I  K  R  I  Q  L  Q  G  N  I  S  W  K  R  I  K  T  *  K  R  K  E  W  N  C  K  C  K  L  H  I  S  K  H  W  K  *  S  C  C  N  A  F  L  N  V  W  K  I  H  I  T  K  L  E  G  C  F  R  L  I  R  V  F  C  I  S  N  C  F  F  F  P  S  E  S  Y  M  Y  N  Y </first_frame>
            <second_frame>  Y  C  Y  G  H  R  *  *  S  E  Y  P  S  E  N  R  T  V  D  D  E  N  Q  V  S  G  A  V  L  I  E  N  L  R  S  F  G  G  A  R  R  R  K  *  *  S  *  Y  *  G  C  F  M  E  W  *  R  K  W  I  C  C  V  V  S  R  *  V  F  *  G  Y  V  T  *  I  L  Q  A  Q  Q  F  L  *  F  H  S  S  T  *  Y  L   : R  I  Q  E  S  S  I  K  T  L  G  I  S  S  W  K  V  P  E  R  V  *  T  F  A  S  R  N  N  K  K  E  M  *  A  K  C  I  S  Y  I  L  K  S  F  *  K  E  H  I  I  I  S  Y  K  *  *  *  S  R  E  Y  N  Y  K  A  T  S  H  G  R  E  S  K  L  E  K  G  K  N  G  I  A  N  A  N  C  T  F  Q  N  I  G  N  E  V  V  A  M  P  F  S  M  C  G  K  S  T  *  Q  N  *  K  V  V  L  D  *  Y  E  C  F  V  Y  Q  T  V  F  F  S  L  L  N  H  T  C  I  I   </second_frame>
            <third_frame>   I  A  M  A  T  D  D  N  R  N  I  H  R  K  I  G  R  S  T  T  R  T  K  C  P  A  P  F  L  S  K  T  Y  D  L  L  E  E  Q  E  E  E  N  S  N  R  N  I  K  V  V  S  W  N  G  E  G  N  G  F  V  V  W  C  P  D  E  F  S  E  V  M  L  P  K  Y  F  K  H  N  N  F  S  S  F  I  R  Q  L  N  T  Y  :  G  F  K  K  V  A  S  K  R  W  E  F  H  H  G  K  F  Q  K  G  C  R  H  L  L  A  E  I  T  R  K  K  C  E  P  S  V  F  P  T  Y  L  N  P  S  K  K  S  T  L  L  L  A  T  N  N  N  D  Q  E  N  T  I  T  R  Q  H  L  M  E  E  N  Q  N  L  K  K  E  R  M  E  L  Q  M  Q  I  A  H  F  K  T  L  E  M  K  L  L  Q  C  L  S  Q  C  V  E  N  P  H  N  K  T  R  R  L  F  *  I  D  T  S  V  L  Y  I  K  L  F  F  F  P  F  *  I  I  H  V  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59180" stop="58905"/>
                    <exon start="57171" stop="56824"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMATDDNRNIHRKIGRSTTRTKCPAPFLSKTYDLLEEQEEENSNRNIKVVSWNGEGNGFVVWCPDEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKVASKRWEFHHGKFQKGCRHLLAEITRKKCEPSVFPTYLNPSKKSTLLLATNNNDQENTITRQHLMEENQNLKKERMELQMQIAHFKTLEMKLLQCLSQCVENPHNKTRRLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="68592" PGL_stop="68198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68592" e_stop="68198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68592" e_stop="68198" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68592" stop="68198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68568" stop="68198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTGCACCTACACCTTCTACGAATCTTGGGTATAATACACAAACTCCAGTAGAAGAGGAATGTTGTAGGTGGATGAAAGCTGTCGATAGCGAATGTGTTTGTTCTCTATTGGCTCATCTGCCTATTTTCCTTTCTAGGCCAATCCATCAGTATACTACTTTGGCTCATGCAACTTGCAGTGTAACTTTCACGTGTGCTTCCTCCGCTAGGTTCCAACAAAATGATCATCAGAAGTCACCACACTCTCCATAACTACTACTAATTACCTACTTTATTTACAATAAGTAAAGATTTTTAGGAAGGGATATGGGCCTTTACTTAATTAAAACTCCTAAAACTTTAAATTATGACTCATTGTATTGAGTAATAAATTGTAATTGTCATCATTTGAAT</gDNA_template>
            <first_frame> H  L  H  L  H  L  L  R  I  L  G  I  I  H  K  L  Q  *  K  R  N  V  V  G  G  *  K  L  S  I  A  N  V  F  V  L  Y  W  L  I  C  L  F  S  F  L  G  Q  S  I  S  I  L  L  W  L  M  Q  L  A  V  *  L  S  R  V  L  P  P  L  G  S  N  K  M  I  I  R  S  H  H  T  L  H  N  Y  Y  *  L  P  T  L  F  T  I  S  K  D  F  *  E  G  I  W  A  F  T  *  L  K  L  L  K  L  *  I  M  T  H  C  I  E  *  *  I  V  I  V  I  I  *   </first_frame>
            <second_frame>  T  C  T  Y  T  F  Y  E  S  W  V  *  Y  T  N  S  S  R  R  G  M  L  *  V  D  E  S  C  R  *  R  M  C  L  F  S  I  G  S  S  A  Y  F  P  F  *  A  N  P  S  V  Y  Y  F  G  S  C  N  L  Q  C  N  F  H  V  C  F  L  R  *  V  P  T  K  *  S  S  E  V  T  T  L  S  I  T  T  T  N  Y  L  L  Y  L  Q  *  V  K  I  F  R  K  G  Y  G  P  L  L  N  *  N  S  *  N  F  K  L  *  L  I  V  L  S  N  K  L  *  L  S  S  F  E  </second_frame>
            <third_frame>   P  A  P  T  P  S  T  N  L  G  Y  N  T  Q  T  P  V  E  E  E  C  C  R  W  M  K  A  V  D  S  E  C  V  C  S  L  L  A  H  L  P  I  F  L  S  R  P  I  H  Q  Y  T  T  L  A  H  A  T  C  S  V  T  F  T  C  A  S  S  A  R  F  Q  Q  N  D  H  Q  K  S  P  H  S  P  *  L  L  L  I  T  Y  F  I  Y  N  K  *  R  F  L  G  R  D  M  G  L  Y  L  I  K  T  P  K  T  L  N  Y  D  S  L  Y  *  V  I  N  C  N  C  H  H  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68590" stop="68339"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAPTPSTNLGYNTQTPVEEECCRWMKAVDSECVCSLLAHLPIFLSRPIHQYTTLAHATCSVTFTCASSARFQQNDHQKSPHSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="75406" PGL_stop="73575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75406" e_stop="75284"/>
            <exon e_start="74220" e_stop="73575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="0.947"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="75406" e_stop="75284" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75283" i_stop="74221" i_length="1063"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="74220" e_stop="73575" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75406" stop="75284"/>
              <exon start="74220" stop="73632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75397" stop="75284"/>
              <exon start="74220" stop="73643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75378" stop="75284"/>
              <exon start="74220" stop="73575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75378" stop="75284"/>
              <exon start="74220" stop="73790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75341" stop="75284"/>
              <exon start="74220" stop="73888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTACCTCTTTAAAGAAACCTATTTTCTTCTCTATTTCCTCTGTTTAATCACCTGGGATTCTCCATTCGAAGCTTGAAAGTCTAAAACTTTGGTTGTTTTTTCAACCCTTTTGCTTGATTG : ATTTGGGAAGACCCTTGGGTTGAACAAGTGCTCAGAAACAAATCTCATGGCCTTGGAGCAGTATTATTCAAACGAGTGGAAATCGATCCCTACTCCAGAATCATCAGACTCAGAGAAGACTTCTGCCTGCTTTGATTGCAACATCTGCTTGGACTTTGCCCGCGATCCGGTTATTACTCTTTGTGGCCATCTCTATTGTTGGCCCTGCATTTACAAGTGGCTTCACTTTCAGAGTGATTCTCTGTCTTCGGATGAACGCCCTCAATGTCCAGTTTGCAAGGCTGAAATCTCCCAAACAGATTTAGTCCCTCTTTACGGGCGTGGGGAAACACTACCTGAATCTGAGCCTGAAAACAAGCTCACTCTAAAAGTGCCTCCCAGGCCACCTGCTTTCAGTCCATCATCCATGTCAAACTCCTTTAACCCTTCTCAGCAACCACCACATCCTAATGCCTATGATCCCCATGCCAGTTACCTCAACAGTTCATCGCCTCCTTCATTCAGTCTCGGAAACAATACATCAGTTGGAGTCTTTCATCCAGTTGTTGGAATGTTCGGAGAGATGGTTTACGAGAGGGTATTTGGTAACTCAGAGAATTTATACACATATCCTAACTCATATCATTTAGTGGCAAATAGTAGTCCA</gDNA_template>
            <first_frame> Y  L  P  L  *  R  N  L  F  S  S  L  F  P  L  F  N  H  L  G  F  S  I  R  S  L  K  V  *  N  F  G  C  F  F  N  P  F  A  *  L  :  I  W  E  D  P  W  V  E  Q  V  L  R  N  K  S  H  G  L  G  A  V  L  F  K  R  V  E  I  D  P  Y  S  R  I  I  R  L  R  E  D  F  C  L  L  *  L  Q  H  L  L  G  L  C  P  R  S  G  Y  Y  S  L  W  P  S  L  L  L  A  L  H  L  Q  V  A  S  L  S  E  *  F  S  V  F  G  *  T  P  S  M  S  S  L  Q  G  *  N  L  P  N  R  F  S  P  S  L  R  A  W  G  N  T  T  *  I  *  A  *  K  Q  A  H  S  K  S  A  S  Q  A  T  C  F  Q  S  I  I  H  V  K  L  L  *  P  F  S  A  T  T  T  S  *  C  L  *  S  P  C  Q  L  P  Q  Q  F  I  A  S  F  I  Q  S  R  K  Q  Y  I  S  W  S  L  S  S  S  C  W  N  V  R  R  D  G  L  R  E  G  I  W  *  L  R  E  F  I  H  I  S  *  L  I  S  F  S  G  K  *  *  S  </first_frame>
            <second_frame>  I  Y  L  F  K  E  T  Y  F  L  L  Y  F  L  C  L  I  T  W  D  S  P  F  E  A  *  K  S  K  T  L  V  V  F  S  T  L  L  L  D  * :   F  G  K  T  L  G  L  N  K  C  S  E  T  N  L  M  A  L  E  Q  Y  Y  S  N  E  W  K  S  I  P  T  P  E  S  S  D  S  E  K  T  S  A  C  F  D  C  N  I  C  L  D  F  A  R  D  P  V  I  T  L  C  G  H  L  Y  C  W  P  C  I  Y  K  W  L  H  F  Q  S  D  S  L  S  S  D  E  R  P  Q  C  P  V  C  K  A  E  I  S  Q  T  D  L  V  P  L  Y  G  R  G  E  T  L  P  E  S  E  P  E  N  K  L  T  L  K  V  P  P  R  P  P  A  F  S  P  S  S  M  S  N  S  F  N  P  S  Q  Q  P  P  H  P  N  A  Y  D  P  H  A  S  Y  L  N  S  S  S  P  P  S  F  S  L  G  N  N  T  S  V  G  V  F  H  P  V  V  G  M  F  G  E  M  V  Y  E  R  V  F  G  N  S  E  N  L  Y  T  Y  P  N  S  Y  H  L  V  A  N  S  S  P </second_frame>
            <third_frame>   F  T  S  L  K  K  P  I  F  F  S  I  S  S  V  *  S  P  G  I  L  H  S  K  L  E  S  L  K  L  W  L  F  F  Q  P  F  C  L  I   : D  L  G  R  P  L  G  *  T  S  A  Q  K  Q  I  S  W  P  W  S  S  I  I  Q  T  S  G  N  R  S  L  L  Q  N  H  Q  T  Q  R  R  L  L  P  A  L  I  A  T  S  A  W  T  L  P  A  I  R  L  L  L  F  V  A  I  S  I  V  G  P  A  F  T  S  G  F  T  F  R  V  I  L  C  L  R  M  N  A  L  N  V  Q  F  A  R  L  K  S  P  K  Q  I  *  S  L  F  T  G  V  G  K  H  Y  L  N  L  S  L  K  T  S  S  L  *  K  C  L  P  G  H  L  L  S  V  H  H  P  C  Q  T  P  L  T  L  L  S  N  H  H  I  L  M  P  M  I  P  M  P  V  T  S  T  V  H  R  L  L  H  S  V  S  E  T  I  H  Q  L  E  S  F  I  Q  L  L  E  C  S  E  R  W  F  T  R  G  Y  L  V  T  Q  R  I  Y  T  H  I  L  T  H  I  I  *  W  Q  I  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74219" stop="73575"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGKTLGLNKCSETNLMALEQYYSNEWKSIPTPESSDSEKTSACFDCNICLDFARDPVITLCGHLYCWPCIYKWLHFQSDSLSSDERPQCPVCKAEISQTDLVPLYGRGETLPESEPENKLTLKVPPRPPAFSPSSMSNSFNPSQQPPHPNAYDPHASYLNSSSPPSFSLGNNTSVGVFHPVVGMFGEMVYERVFGNSENLYTYPNSYHLVANSSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="77918" PGL_stop="81457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77918" e_stop="78034"/>
            <exon e_start="78673" e_stop="78806"/>
            <exon e_start="78895" e_stop="78932"/>
            <exon e_start="79714" e_stop="79773"/>
            <exon e_start="79937" e_stop="80011"/>
            <exon e_start="80846" e_stop="81323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.718" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77918" e_stop="78034" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78673" e_stop="78806" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.718" acc_prob="0.976">
            <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78895" e_stop="78932" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.933">
            <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79714" e_stop="79773" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.959">
            <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79937" e_stop="80011" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80846" e_stop="81323" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77918" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77928" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77932" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77932" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="79987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218664" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77946" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77957" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="80943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77958" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77958" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="80912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77976" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77976" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77991" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78763" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTAGTAAATTTGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG : GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT : CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG : GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG : GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTAAAGATGGTGGTGTCAGGTATTTATAATTTCATCAATCTACTTGTTTGTAGATCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGC</gDNA_template>
            <first_frame> I  S  S  K  F  E  R  M  S  P  Y  T  L  I  I  L  E  F  *  F  E  I  L  F  T  I  V  L  S  S  S  P  V  E  S  T  L  L  Q  :  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H  D  V  W  F  W  R  *  *  Q   : S  T  S  R  N  C  V  T  C  *  R  H  R  G  G  L  C  H  *  Y   : G  A  Q  S  S  G  Y  C  N  Q  K  G  E  A  F  D  R  G  L  S  V  L  N  *  K   : G  L  A  E  T  *  P  V  Y  R  T  V  V  H  E  *  G  A  E  T  S  S  E  G  F  R  G  R  *  R  E  I  G  F  T  S  V  K  G  K  C  D  L  S  S  E  *  Q  I  E  W  H  R  R  T  S  I  Q  F  N  L  L  W  S  K  *  P  A  C  S  H  F  S  L  A  Q  S  M  S  E  S  P  C  S  C  V  Y  S  C  T  I  D  L  R  C  *  N  Q  F  L  K  C  S  I  G  A  L  N  A  T  C  V  *  F  G  S  S  K  D  G  G  V  R  Y  L  *  F  H  Q  S  T  C  L  *  I  C  T  N  *  W  N  E  L  *  V  N  S  E  *  S  P  N  *  I  D  F  D  L  F   </first_frame>
            <second_frame>  F  L  V  N  L  S  G  C  P  L  I  P  *  *  F  W  N  F  N  L  K  F  C  L  Q  L  C  S  R  H  L  Q  W  N  Q  H  F  C  R :   L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  M  Y  G  F  G  D  D  S  N  :  P  L  P  E  T  V  S  L  V  E  D  I  V  V  D  Y  V  T  D  M  :  V  H  K  A  Q  D  I  A  T  K  R  G  K  L  L  T  E  D  F  L  F  L  I  R  K  :  D  L  P  K  L  N  R  C  T  E  L  L  S  M  N  E  E  L  K  Q  A  R  K  A  F  E  V  D  E  E  K  L  A  S  H  Q  *  R  G  S  V  I  L  V  Q  N  D  K  L  S  G  T  V  G  P  V  Y  S  L  T  Y  S  G  V  N  S  L  L  V  L  I  F  R  *  H  N  R  C  L  S  H  L  V  A  A  F  T  L  A  Q  *  I  F  D  A  E  I  S  F  L  S  V  L  L  V  H  *  T  P  P  V  C  S  L  A  V  L  K  M  V  V  S  G  I  Y  N  F  I  N  L  L  V  C  R  S  A  Q  T  D  G  M  S  C  K  L  T  L  S  S  H  P  I  R  L  I  L  I  C  L  </second_frame>
            <third_frame>   F  *  *  I  *  A  D  V  P  L  Y  P  N  N  F  G  I  L  I  *  N  S  V  Y  N  C  A  L  V  I  S  S  G  I  N  T  F  A   : G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  *  C  M  V  L  E  M  I  A  I :   H  F  Q  K  L  C  H  L  L  K  T  S  W  W  I  M  S  L  I  W :   C  T  K  L  R  I  L  Q  P  K  G  G  S  F  *  P  R  T  F  C  S  *  L  E  R :   T  C  R  N  L  T  G  V  Q  N  C  C  P  *  M  R  S  *  N  K  L  G  R  L  S  R  S  M  K  R  N  W  L  H  I  S  E  G  E  V  *  S  *  F  R  M  T  N  *  V  A  P  *  D  Q  Y  T  V  *  P  T  L  E  *  I  A  C  L  F  S  F  F  A  S  T  I  D  V  *  V  T  L  *  L  R  L  L  L  H  N  R  S  S  M  L  K  S  V  S  *  V  F  Y  W  C  I  E  R  H  L  C  V  V  W  Q  F  *  R  W  W  C  Q  V  F  I  I  S  S  I  Y  L  F  V  D  L  H  K  L  M  E  *  V  V  S  *  L  *  V  V  T  Q  L  D  *  F  *  S  V  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78692" stop="78806"/>
                    <exon start="78895" stop="78932"/>
                    <exon start="79714" stop="79773"/>
                    <exon start="79937" stop="80011"/>
                    <exon start="80846" stop="80956"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLKMNNSSAGPSSKARVGASQPSESSLKRKRGMFQKDLQHMMYGFGDDSNPLPETVSLVEDIVVDYVTDMVHKAQDIATKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFEVDEEKLASHQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77928" e_stop="78034"/>
            <exon e_start="78673" e_stop="78806"/>
            <exon e_start="78895" e_stop="78932"/>
            <exon e_start="79714" e_stop="79773"/>
            <exon e_start="79937" e_stop="80011"/>
            <exon e_start="80846" e_stop="81196"/>
            <exon e_start="81247" e_stop="81457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.718" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.787" e_score="0.997"/>
          <exon-only e_score="0.848"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77928" e_stop="78034" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="78035" i_stop="78672" i_length="638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78673" e_stop="78806" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.718" acc_prob="0.976">
            <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78895" e_stop="78932" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.933">
            <gDNA_intron_boundary i_start="78933" i_stop="79713" i_length="781"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79714" e_stop="79773" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.959">
            <gDNA_intron_boundary i_start="79774" i_stop="79936" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79937" e_stop="80011" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80012" i_stop="80845" i_length="834"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="80846" e_stop="81196" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.787">
            <gDNA_intron_boundary i_start="81197" i_stop="81246" i_length="50"/>
          </intron>
          <exon e_serial="7" e_score="0.848">
            <gDNA_exon_boundary e_start="81247" e_stop="81457" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77928" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77932" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77932" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="79987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218664" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77946" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77957" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="80943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77958" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77958" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="80912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77976" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77976" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77991" stop="78034"/>
              <exon start="78673" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78763" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79714" stop="79773"/>
              <exon start="79937" stop="80011"/>
              <exon start="80846" stop="81195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80928" stop="81196"/>
              <exon start="81247" stop="81457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419737" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGAGCGGATGTCCCCTTATACCCTAATAATTTTGGAATTTTAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG : GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT : CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATTATGTCACTGATATG : GTGCACAAAGCTCAGGATATTGCAACCAAAAGGGGGAAGCTTTTGACCGAGGACTTTCTGTTCTTAATTAGAAAG : GACTTGCCGAAACTTAACCGGTGTACAGAACTGTTGTCCATGAATGAGGAGCTGAAACAAGCTCGGAAGGCTTTCGAGGTCGATGAAGAGAAATTGGCTTCACATCAGTGAAGGGGAAGTGTGATCTTAGTTCAGAATGACAAATTGAGTGGCACCGTAGGACCAGTATACAGTTTAACCTACTCTGGAGTAAATAGCCTGCTTGTTCTCATTTTTCGCTAGCACAATCGATGTCTGAGTCACCTTGTAGCTGCGTTTACTCTTGCACAATAGATCTTCGATGCTGAAATCAGTTTCTTAAGTGTTCTATTGGTGCATTGAACGCCACCTGTGTGTAGTTTGGCAGTTCTA : ATCTGCACAAACTGATGGAATGAGTTGTAAGTTAACTCTGAGTAGTCACCCAATTAGATTGATTTTGATCTGTTTGCTATGCAAAAGATGGAAGATCCTCTACGGCTTTTACCTTGTTAAGATTCTGGTAAAGCTTTCACAAAATGCTTCATTTTGTGCAAGTTATAAACATTCTAAATTGAAAAAAAAAAGATGGAAAATCTCGTAATCA</gDNA_template>
            <first_frame> N  L  S  G  C  P  L  I  P  *  *  F  W  N  F  N  L  K  F  C  L  Q  L  C  S  R  H  L  Q  W  N  Q  H  F  C  R :   L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  M  Y  G  F  G  D  D  S  N  :  P  L  P  E  T  V  S  L  V  E  D  I  V  V  D  Y  V  T  D  M  :  V  H  K  A  Q  D  I  A  T  K  R  G  K  L  L  T  E  D  F  L  F  L  I  R  K  :  D  L  P  K  L  N  R  C  T  E  L  L  S  M  N  E  E  L  K  Q  A  R  K  A  F  E  V  D  E  E  K  L  A  S  H  Q  *  R  G  S  V  I  L  V  Q  N  D  K  L  S  G  T  V  G  P  V  Y  S  L  T  Y  S  G  V  N  S  L  L  V  L  I  F  R  *  H  N  R  C  L  S  H  L  V  A  A  F  T  L  A  Q  *  I  F  D  A  E  I  S  F  L  S  V  L  L  V  H  *  T  P  P  V  C  S  L  A  V  L  :  I  C  T  N  *  W  N  E  L  *  V  N  S  E  *  S  P  N  *  I  D  F  D  L  F  A  M  Q  K  M  E  D  P  L  R  L  L  P  C  *  D  S  G  K  A  F  T  K  C  F  I  L  C  K  L  *  T  F  *  I  E  K  K  K  M  E  N  L  V  I  </first_frame>
            <second_frame>  I  *  A  D  V  P  L  Y  P  N  N  F  G  I  L  I  *  N  S  V  Y  N  C  A  L  V  I  S  S  G  I  N  T  F  A   : G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  *  C  M  V  L  E  M  I  A  I :   H  F  Q  K  L  C  H  L  L  K  T  S  W  W  I  M  S  L  I  W :   C  T  K  L  R  I  L  Q  P  K  G  G  S  F  *  P  R  T  F  C  S  *  L  E  R :   T  C  R  N  L  T  G  V  Q  N  C  C  P  *  M  R  S  *  N  K  L  G  R  L  S  R  S  M  K  R  N  W  L  H  I  S  E  G  E  V  *  S  *  F  R  M  T  N  *  V  A  P  *  D  Q  Y  T  V  *  P  T  L  E  *  I  A  C  L  F  S  F  F  A  S  T  I  D  V  *  V  T  L  *  L  R  L  L  L  H  N  R  S  S  M  L  K  S  V  S  *  V  F  Y  W  C  I  E  R  H  L  C  V  V  W  Q  F  * :   S  A  Q  T  D  G  M  S  C  K  L  T  L  S  S  H  P  I  R  L  I  L  I  C  L  L  C  K  R  W  K  I  L  Y  G  F  Y  L  V  K  I  L  V  K  L  S  Q  N  A  S  F  C  A  S  Y  K  H  S  K  L  K  K  K  R  W  K  I  S  *  S </second_frame>
            <third_frame>   F  E  R  M  S  P  Y  T  L  I  I  L  E  F  *  F  E  I  L  F  T  I  V  L  S  S  S  P  V  E  S  T  L  L  Q  :  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H  D  V  W  F  W  R  *  *  Q   : S  T  S  R  N  C  V  T  C  *  R  H  R  G  G  L  C  H  *  Y   : G  A  Q  S  S  G  Y  C  N  Q  K  G  E  A  F  D  R  G  L  S  V  L  N  *  K   : G  L  A  E  T  *  P  V  Y  R  T  V  V  H  E  *  G  A  E  T  S  S  E  G  F  R  G  R  *  R  E  I  G  F  T  S  V  K  G  K  C  D  L  S  S  E  *  Q  I  E  W  H  R  R  T  S  I  Q  F  N  L  L  W  S  K  *  P  A  C  S  H  F  S  L  A  Q  S  M  S  E  S  P  C  S  C  V  Y  S  C  T  I  D  L  R  C  *  N  Q  F  L  K  C  S  I  G  A  L  N  A  T  C  V  *  F  G  S  S   : N  L  H  K  L  M  E  *  V  V  S  *  L  *  V  V  T  Q  L  D  *  F  *  S  V  C  Y  A  K  D  G  R  S  S  T  A  F  T  L  L  R  F  W  *  S  F  H  K  M  L  H  F  V  Q  V  I  N  I  L  N  *  K  K  K  D  G  K  S  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78692" stop="78806"/>
                    <exon start="78895" stop="78932"/>
                    <exon start="79714" stop="79773"/>
                    <exon start="79937" stop="80011"/>
                    <exon start="80846" stop="80956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLKMNNSSAGPSSKARVGASQPSESSLKRKRGMFQKDLQHMMYGFGDDSNPLPETVSLVEDIVVDYVTDMVHKAQDIATKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFEVDEEKLASHQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81248" stop="81454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAQTDGMSCKLTLSSHPIRLILICLLCKRWKILYGFYLVKILVKLSQNASFCASYKHSKLKKKRWKIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78658" e_stop="78806"/>
            <exon e_start="78895" e_stop="78932"/>
            <exon e_start="79035" e_stop="79039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.718" acc_prob="0.976" e_score="0.973"/>
          <exon-intron don_prob="0.952" acc_prob="0.709" e_score="1.000"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="78658" e_stop="78806" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.718" acc_prob="0.976">
            <gDNA_intron_boundary i_start="78807" i_stop="78894" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78895" e_stop="78932" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.709">
            <gDNA_intron_boundary i_start="78933" i_stop="79034" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="79035" e_stop="79039" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78658" stop="78806"/>
              <exon start="78895" stop="78932"/>
              <exon start="79035" stop="79039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT : TGAAT</gDNA_template>
            <first_frame> M  T  L  W  Q  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H  D  V  W  F  W  R  *  *  Q   : L  N </first_frame>
            <second_frame>  *  H  F  G  R  L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  M  Y  G  F  G  D  D  S  N  :  *   </second_frame>
            <third_frame>   D  T  L  A  G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  *  C  M  V  L  E  M  I  A  I :   E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0005F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="78821" PGL_stop="78660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78821" e_stop="78660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="78821" e_stop="78660" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78821" stop="78660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGAGTTACTAACAATCTTTCTGAAACATGCCACGTTTCCTCTTAAGTGAACTTTCTGAAGGTTGTGATGCTCCTACTCTAGCTTTTGAGGATGGCCCTGCAGAAGAGTTGTTCATTTTCAATTTATTTTAACGTCCACCTCTCAACCTGCCAAAGTGTC</gDNA_template>
            <first_frame> *  R  V  T  N  N  L  S  E  T  C  H  V  S  S  *  V  N  F  L  K  V  V  M  L  L  L  *  L  L  R  M  A  L  Q  K  S  C  S  F  S  I  Y  F  N  V  H  L  S  T  C  Q  S  V </first_frame>
            <second_frame>  K  E  L  L  T  I  F  L  K  H  A  T  F  P  L  K  *  T  F  *  R  L  *  C  S  Y  S  S  F  *  G  W  P  C  R  R  V  V  H  F  Q  F  I  L  T  S  T  S  Q  P  A  K  V   </second_frame>
            <third_frame>   K  S  Y  *  Q  S  F  *  N  M  P  R  F  L  L  S  E  L  S  E  G  C  D  A  P  T  L  A  F  E  D  G  P  A  E  E  L  F  I  F  N  L  F  *  R  P  P  L  N  L  P  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0005F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="85078" PGL_stop="84358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85078" e_stop="84653"/>
            <exon e_start="84500" e_stop="84491"/>
            <exon e_start="84392" e_stop="84358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.444" e_score="1.000"/>
          <exon-intron don_prob="0.764" acc_prob="0.864" e_score="0.600"/>
          <exon-only e_score="0.457"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85078" e_stop="84653" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.444">
            <gDNA_intron_boundary i_start="84652" i_stop="84501" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="84500" e_stop="84491" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.764" acc_prob="0.864">
            <gDNA_intron_boundary i_start="84490" i_stop="84393" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.457">
            <gDNA_exon_boundary e_start="84392" e_stop="84358" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85078" stop="84653"/>
              <exon start="84500" stop="84491"/>
              <exon start="84392" stop="84358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCAGTACCCACAGACCAGATGTGGGACTTTCAATCATCAGGAGATAGAAACTGTCATTTTCAGCTGCAGATACATCTTCACGACTTTCAATCATCAGGTGGGAAGTCCTCATCTGAGGCATTATCCAGAAATGAACCAAGAGTTTTTCTCAGAAAACTGAATGCTTTATCATCCTGTCAAGCAAAAAAGGAGGACGGTTAACTTGGCGGTATGAGAATGTATGCAGTGTGTGACAGAGATAAGGTGCATCAAAGAAGTTAACCTGCTTCTTTTTCTTCAGCGACTCCTTTAGTTCAGAAATTCGTTTTCTAGAGTCTTGCTCAAGATCAGATATCATGCTCTTCTCTTTCTTCCCTGAATTAATGTCATAAAAATCTGTCACAGGCATCCTTATCATTCAATAAATATATAATACAGAGTTCCT : GTATAAACGC : AAACACAATGTTCCAAAAGTTGTACGGACTACAAA</gDNA_template>
            <first_frame> W  Q  Y  P  Q  T  R  C  G  T  F  N  H  Q  E  I  E  T  V  I  F  S  C  R  Y  I  F  T  T  F  N  H  Q  V  G  S  P  H  L  R  H  Y  P  E  M  N  Q  E  F  F  S  E  N  *  M  L  Y  H  P  V  K  Q  K  R  R  T  V  N  L  A  V  *  E  C  M  Q  C  V  T  E  I  R  C  I  K  E  V  N  L  L  L  F  L  Q  R  L  L  *  F  R  N  S  F  S  R  V  L  L  K  I  R  Y  H  A  L  L  F  L  P  *  I  N  V  I  K  I  C  H  R  H  P  Y  H  S  I  N  I  *  Y  R  V  P  :  V  *  T   : Q  T  Q  C  S  K  S  C  T  D  Y  K </first_frame>
            <second_frame>  G  S  T  H  R  P  D  V  G  L  S  I  I  R  R  *  K  L  S  F  S  A  A  D  T  S  S  R  L  S  I  I  R  W  E  V  L  I  *  G  I  I  Q  K  *  T  K  S  F  S  Q  K  T  E  C  F  I  I  L  S  S  K  K  G  G  R  L  T  W  R  Y  E  N  V  C  S  V  *  Q  R  *  G  A  S  K  K  L  T  C  F  F  F  F  S  D  S  F  S  S  E  I  R  F  L  E  S  C  S  R  S  D  I  M  L  F  S  F  F  P  E  L  M  S  *  K  S  V  T  G  I  L  I  I  Q  *  I  Y  N  T  E  F  L :   Y  K  R  :  K  H  N  V  P  K  V  V  R  T  T   </second_frame>
            <third_frame>   A  V  P  T  D  Q  M  W  D  F  Q  S  S  G  D  R  N  C  H  F  Q  L  Q  I  H  L  H  D  F  Q  S  S  G  G  K  S  S  S  E  A  L  S  R  N  E  P  R  V  F  L  R  K  L  N  A  L  S  S  C  Q  A  K  K  E  D  G  *  L  G  G  M  R  M  Y  A  V  C  D  R  D  K  V  H  Q  R  S  *  P  A  S  F  S  S  A  T  P  L  V  Q  K  F  V  F  *  S  L  A  Q  D  Q  I  S  C  S  S  L  S  S  L  N  *  C  H  K  N  L  S  Q  A  S  L  S  F  N  K  Y  I  I  Q  S  S   : C  I  N  A :   N  T  M  F  Q  K  L  Y  G  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85076" stop="84876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVPTDQMWDFQSSGDRNCHFQLQIHLHDFQSSGGKSSSEALSRNEPRVFLRKLNALSSCQAKKEDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="88952" PGL_stop="97086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88952" e_stop="89031"/>
            <exon e_start="89666" e_stop="89799"/>
            <exon e_start="89888" e_stop="89925"/>
            <exon e_start="90714" e_stop="90773"/>
            <exon e_start="96927" e_stop="97086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.461" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="88952" e_stop="89031" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89032" i_stop="89665" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89666" e_stop="89799" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.461" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89800" i_stop="89887" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89888" e_stop="89925" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.981">
            <gDNA_intron_boundary i_start="89926" i_stop="90713" i_length="788"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90714" e_stop="90773" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90774" i_stop="96926" i_length="6153"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="96927" e_stop="97086" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88952" stop="89031"/>
              <exon start="89666" stop="89799"/>
              <exon start="89888" stop="89925"/>
              <exon start="90714" stop="90773"/>
              <exon start="96927" stop="97086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATAATTTTGGAATTTCAATTTGAAATTCTGTTTACAATTGTGCTCTCGTCATCTCCAGTGGAATCAACACTTTTGCAG : GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT : CCACTTCCAGAAACTGTGTCACTTGTTGAAGACATCGTGGTGGATGATGTCACTGATATG : ACTATCTCTCCAGAAGAAGATACAATGGAGAAAATACTAGCTATGATGACAAACCTTTGTCAAAAGGTGGAGAAGATAGAAAACGAAGTACAAGTATTAATAGAAACATTTAAAAACCAGCAGCATGACGGAGCTAGAAGGTGACGTTGGGAAACACCTA</gDNA_template>
            <first_frame> *  *  F  W  N  F  N  L  K  F  C  L  Q  L  C  S  R  H  L  Q  W  N  Q  H  F  C  R :   L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  M  Y  G  F  G  D  D  S  N  :  P  L  P  E  T  V  S  L  V  E  D  I  V  V  D  D  V  T  D  M  :  T  I  S  P  E  E  D  T  M  E  K  I  L  A  M  M  T  N  L  C  Q  K  V  E  K  I  E  N  E  V  Q  V  L  I  E  T  F  K  N  Q  Q  H  D  G  A  R  R  *  R  W  E  T  P  </first_frame>
            <second_frame>  N  N  F  G  I  S  I  *  N  S  V  Y  N  C  A  L  V  I  S  S  G  I  N  T  F  A   : G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  *  C  M  V  L  E  M  I  A  I :   H  F  Q  K  L  C  H  L  L  K  T  S  W  W  M  M  S  L  I  * :   L  S  L  Q  K  K  I  Q  W  R  K  Y  *  L  *  *  Q  T  F  V  K  R  W  R  R  *  K  T  K  Y  K  Y  *  *  K  H  L  K  T  S  S  M  T  E  L  E  G  D  V  G  K  H  L </second_frame>
            <third_frame>   I  I  L  E  F  Q  F  E  I  L  F  T  I  V  L  S  S  S  P  V  E  S  T  L  L  Q  :  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H  D  V  W  F  W  R  *  *  Q   : S  T  S  R  N  C  V  T  C  *  R  H  R  G  G  *  C  H  *  Y   : D  Y  L  S  R  R  R  Y  N  G  E  N  T  S  Y  D  D  K  P  L  S  K  G  G  E  D  R  K  R  S  T  S  I  N  R  N  I  *  K  P  A  A  *  R  S  *  K  V  T  L  G  N  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89685" stop="89799"/>
                    <exon start="89888" stop="89925"/>
                    <exon start="90714" stop="90773"/>
                    <exon start="96927" stop="97070"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLKMNNSSAGPSSKARVGASQPSESSLKRKRGMFQKDLQHMMYGFGDDSNPLPETVSLVEDIVVDDVTDMTISPEEDTMEKILAMMTNLCQKVEKIENEVQVLIETFKNQQHDGARR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95616" e_stop="96099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="95616" e_stop="96099" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95616" stop="96099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCATAAGATGAAAGTAAAAATTGAATTAATAGATGAAAATAGTATAATAACACAAAAACCATTATAATATAATTTTGATGATTTAAAGAATTCAAAATACATATAAATGAACTATTGAAGAATAATTATATACAAGAAAGCAATAGTAAACATACAAGTCCAGCATTTATAGTTAATAAACATAGTGAACAAAAACGAGGTAGAAGTAGAATGGTTATAGATTATCGCAACCTGAATGCTAAAACTAAAACATATAACTACCCAATACCAAATAAGATACTAAAAATAAGACAGATACAAGGATATAACTATTTCAGTAAATTTGATTGTAAATCAGGATTTTATCACTTAAAATTAGACGAAGAATCTAAACAGCTAACAACATTTACTGTACCACAAGGATTTTATGAGTGGAATGTTCTACCATTTGGATATAAAAATGCACCAGGTAGATTCCAACATTTTATGGACAATTATTTT</gDNA_template>
            <first_frame> K  S  I  R  *  K  *  K  L  N  *  *  M  K  I  V  *  *  H  K  N  H  Y  N  I  I  L  M  I  *  R  I  Q  N  T  Y  K  *  T  I  E  E  *  L  Y  T  R  K  Q  *  *  T  Y  K  S  S  I  Y  S  *  *  T  *  *  T  K  T  R  *  K  *  N  G  Y  R  L  S  Q  P  E  C  *  N  *  N  I  *  L  P  N  T  K  *  D  T  K  N  K  T  D  T  R  I  *  L  F  Q  *  I  *  L  *  I  R  I  L  S  L  K  I  R  R  R  I  *  T  A  N  N  I  Y  C  T  T  R  I  L  *  V  E  C  S  T  I  W  I  *  K  C  T  R  *  I  P  T  F  Y  G  Q  L  F  </first_frame>
            <second_frame>  K  A  *  D  E  S  K  N  *  I  N  R  *  K  *  Y  N  N  T  K  T  I  I  I  *  F  *  *  F  K  E  F  K  I  H  I  N  E  L  L  K  N  N  Y  I  Q  E  S  N  S  K  H  T  S  P  A  F  I  V  N  K  H  S  E  Q  K  R  G  R  S  R  M  V  I  D  Y  R  N  L  N  A  K  T  K  T  Y  N  Y  P  I  P  N  K  I  L  K  I  R  Q  I  Q  G  Y  N  Y  F  S  K  F  D  C  K  S  G  F  Y  H  L  K  L  D  E  E  S  K  Q  L  T  T  F  T  V  P  Q  G  F  Y  E  W  N  V  L  P  F  G  Y  K  N  A  P  G  R  F  Q  H  F  M  D  N  Y  F </second_frame>
            <third_frame>   K  H  K  M  K  V  K  I  E  L  I  D  E  N  S  I  I  T  Q  K  P  L  *  Y  N  F  D  D  L  K  N  S  K  Y  I  *  M  N  Y  *  R  I  I  I  Y  K  K  A  I  V  N  I  Q  V  Q  H  L  *  L  I  N  I  V  N  K  N  E  V  E  V  E  W  L  *  I  I  A  T  *  M  L  K  L  K  H  I  T  T  Q  Y  Q  I  R  Y  *  K  *  D  R  Y  K  D  I  T  I  S  V  N  L  I  V  N  Q  D  F  I  T  *  N  *  T  K  N  L  N  S  *  Q  H  L  L  Y  H  K  D  F  M  S  G  M  F  Y  H  L  D  I  K  M  H  Q  V  D  S  N  I  L  W  T  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95701" stop="96099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKEFKIHINELLKNNYIQESNSKHTSPAFIVNKHSEQKRGRSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDCKSGFYHLKLDEESKQLTTFTVPQGFYEWNVLPFGYKNAPGRFQHFMDNYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="89653" e_stop="89799"/>
            <exon e_start="89888" e_stop="89899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.461" acc_prob="0.973" e_score="0.966"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="89653" e_stop="89799" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.461" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89800" i_stop="89887" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89888" e_stop="89899" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89653" stop="89799"/>
              <exon start="89888" stop="89899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225231" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACACTTTGGCAGGTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGA</gDNA_template>
            <first_frame> D  T  L  A  G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  * </first_frame>
            <second_frame>  T  L  W  Q  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H   </second_frame>
            <third_frame>   H  F  G  R  L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0005F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="89017" e_stop="89031"/>
            <exon e_start="89666" e_stop="89799"/>
            <exon e_start="89888" e_stop="89925"/>
            <exon e_start="90028" e_stop="90032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.461" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.597" e_score="1.000"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89017" e_stop="89031" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89032" i_stop="89665" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89666" e_stop="89799" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.461" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89800" i_stop="89887" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89888" e_stop="89925" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.597">
            <gDNA_intron_boundary i_start="89926" i_stop="90027" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.400">
            <gDNA_exon_boundary e_start="90028" e_stop="90032" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89017" stop="89031"/>
              <exon start="89666" stop="89799"/>
              <exon start="89888" stop="89925"/>
              <exon start="90028" stop="90032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACACTTTTGCAG : GTTGAGAGGTGGACGTTAAAATAAATTGAAAATGAACAACTCTTCTGCAGGGCCATCCTCAAAAGCTAGAGTAGGAGCATCACAACCTTCAGAAAGTTCACTTAAGAGGAAACGTGGCATGTTTCAGAAAGATT : TGCAACACATGATGTATGGTTTTGGAGATGATAGCAAT : TGAAT</gDNA_template>
            <first_frame> S  T  L  L  Q  :  V  E  R  W  T  L  K  *  I  E  N  E  Q  L  F  C  R  A  I  L  K  S  *  S  R  S  I  T  T  F  R  K  F  T  *  E  E  T  W  H  V  S  E  R  F :   A  T  H  D  V  W  F  W  R  *  *  Q   : L  N </first_frame>
            <second_frame>  Q  H  F  C  R :   L  R  G  G  R  *  N  K  L  K  M  N  N  S  S  A  G  P  S  S  K  A  R  V  G  A  S  Q  P  S  E  S  S  L  K  R  K  R  G  M  F  Q  K  D   : L  Q  H  M  M  Y  G  F  G  D  D  S  N  :  *   </second_frame>
            <third_frame>   N  T  F  A   : G  *  E  V  D  V  K  I  N  *  K  *  T  T  L  L  Q  G  H  P  Q  K  L  E  *  E  H  H  N  L  Q  K  V  H  L  R  G  N  V  A  C  F  R  K  I  :  C  N  T  *  C  M  V  L  E  M  I  A  I :   E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0005F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="97117" PGL_stop="98408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97117" e_stop="98408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="97117" e_stop="98408" e_length="1292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97118" stop="97738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97118" stop="97706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97118" stop="97669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97711" stop="98408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97712" stop="98407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97954" stop="98408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGAAGCACATCTACAGGAAGCACATATGCAGGAGGAACATCTACAAAAAAAGAAGGTAAGATGAAATATACAAACACAAATGAACAAACTATTCTCTAAACCATACTCTCCACAAAATACCCAAAAAGATATGTTCGTACCCCACAAATAAATACTTACAAAGCCAGTCTAGATTCACAAAAACAAACATATAATCACATTAACAGAATGTATATAGAAAATATATACAAGATACAAACTTTTCTAAACCTAAACCCTAGAGCAAAAGATACCAAAAATCCAAACGAAAATTTTATATCACCCAATACCTACAAGGATACAACAAACTAATAGCACAACCAGGAACAAATCCAAATCTAGTAGCAACTTGCTACAATTACGGGCTAATAAGCACAGTATATACTATAACTGGAGACGAAGTAGCTAAAATACCTGAGCTACATGAGGCATTTCTGCAATATAAAAGAATAACTAAAGGAACTTTATTTTATATAAAGTTCTACTCAGCAACAGCAGAAATACTATATGAAGAAATTAAACCTACAATACAAGTTATTAAGATAGATTTAACTAGAGATATGATAATACTAGAAAAAATAGATATACAAGAAGAGATACAGAAGGTGGATATCCCAGATTTTTATGCAAACAAAAGAACTATTGGGATAGCTACCATATTAAATGAGTTATCAAACACTACCTAAATGAAAATGCAATTTGGAGTTATTACAACAGAGATCAAACAATGATATACTCCAATTGTAGAGATATAAGAGCAGCAGATATGGAAGAAGTACGACAATGGATATTAAGTCTGCTGAAGCCAGAACAAACACCTACAACAAGAGCTATCAGGAAAAAATTCATTTCTCCAAACTTGATGACCAGATACTGCAAACTAATTGGACAAAAGTATTCAGATCATCTATGTACAAAATGCGACGGAGAAGATAACTATATTCCTGAAGTCCAGCTAGAATGAAGACATATGTAAAGTATGAATAGTAGTGTCTGTAAAGTATGAATAGTAGTGTCGGCCATATTTAAAAAAGCAAAGGCCAGTATATAAAGAAGTAAAGTTGTAAATAGTATGTCGGCCATATAAAAAATAAAGGCCAATTATGTGTGAAAGTATTTTGTTTTCTTGTGTCGGCCGAATATAAATAGGCCAGGTGTAAAGTGTTGTATGTAAAGGAGTGTCGGCCATTTGGCCAAAGTGTTGAGTTTTCTTGTATAAATAGAGGGCTTTCCCTCATAATAAAATCATCCCTTTCCTCTATATCTCTCTC</gDNA_template>
            <first_frame> A  G  S  T  S  T  G  S  T  Y  A  G  G  T  S  T  K  K  E  G  K  M  K  Y  T  N  T  N  E  Q  T  I  L  *  T  I  L  S  T  K  Y  P  K  R  Y  V  R  T  P  Q  I  N  T  Y  K  A  S  L  D  S  Q  K  Q  T  Y  N  H  I  N  R  M  Y  I  E  N  I  Y  K  I  Q  T  F  L  N  L  N  P  R  A  K  D  T  K  N  P  N  E  N  F  I  S  P  N  T  Y  K  D  T  T  N  *  *  H  N  Q  E  Q  I  Q  I  *  *  Q  L  A  T  I  T  G  *  *  A  Q  Y  I  L  *  L  E  T  K  *  L  K  Y  L  S  Y  M  R  H  F  C  N  I  K  E  *  L  K  E  L  Y  F  I  *  S  S  T  Q  Q  Q  Q  K  Y  Y  M  K  K  L  N  L  Q  Y  K  L  L  R  *  I  *  L  E  I  *  *  Y  *  K  K  *  I  Y  K  K  R  Y  R  R  W  I  S  Q  I  F  M  Q  T  K  E  L  L  G  *  L  P  Y  *  M  S  Y  Q  T  L  P  K  *  K  C  N  L  E  L  L  Q  Q  R  S  N  N  D  I  L  Q  L  *  R  Y  K  S  S  R  Y  G  R  S  T  T  M  D  I  K  S  A  E  A  R  T  N  T  Y  N  K  S  Y  Q  E  K  I  H  F  S  K  L  D  D  Q  I  L  Q  T  N  W  T  K  V  F  R  S  S  M  Y  K  M  R  R  R  R  *  L  Y  S  *  S  P  A  R  M  K  T  Y  V  K  Y  E  *  *  C  L  *  S  M  N  S  S  V  G  H  I  *  K  S  K  G  Q  Y  I  K  K  *  S  C  K  *  Y  V  G  H  I  K  N  K  G  Q  L  C  V  K  V  F  C  F  L  V  S  A  E  Y  K  *  A  R  C  K  V  L  Y  V  K  E  C  R  P  F  G  Q  S  V  E  F  S  C  I  N  R  G  L  S  L  I  I  K  S  S  L  S  S  I  S  L   </first_frame>
            <second_frame>  Q  E  A  H  L  Q  E  A  H  M  Q  E  E  H  L  Q  K  K  K  V  R  *  N  I  Q  T  Q  M  N  K  L  F  S  K  P  Y  S  P  Q  N  T  Q  K  D  M  F  V  P  H  K  *  I  L  T  K  P  V  *  I  H  K  N  K  H  I  I  T  L  T  E  C  I  *  K  I  Y  T  R  Y  K  L  F  *  T  *  T  L  E  Q  K  I  P  K  I  Q  T  K  I  L  Y  H  P  I  P  T  R  I  Q  Q  T  N  S  T  T  R  N  K  S  K  S  S  S  N  L  L  Q  L  R  A  N  K  H  S  I  Y  Y  N  W  R  R  S  S  *  N  T  *  A  T  *  G  I  S  A  I  *  K  N  N  *  R  N  F  I  L  Y  K  V  L  L  S  N  S  R  N  T  I  *  R  N  *  T  Y  N  T  S  Y  *  D  R  F  N  *  R  Y  D  N  T  R  K  N  R  Y  T  R  R  D  T  E  G  G  Y  P  R  F  L  C  K  Q  K  N  Y  W  D  S  Y  H  I  K  *  V  I  K  H  Y  L  N  E  N  A  I  W  S  Y  Y  N  R  D  Q  T  M  I  Y  S  N  C  R  D  I  R  A  A  D  M  E  E  V  R  Q  W  I  L  S  L  L  K  P  E  Q  T  P  T  T  R  A  I  R  K  K  F  I  S  P  N  L  M  T  R  Y  C  K  L  I  G  Q  K  Y  S  D  H  L  C  T  K  C  D  G  E  D  N  Y  I  P  E  V  Q  L  E  *  R  H  M  *  S  M  N  S  S  V  C  K  V  *  I  V  V  S  A  I  F  K  K  A  K  A  S  I  *  R  S  K  V  V  N  S  M  S  A  I  *  K  I  K  A  N  Y  V  *  K  Y  F  V  F  L  C  R  P  N  I  N  R  P  G  V  K  C  C  M  *  R  S  V  G  H  L  A  K  V  L  S  F  L  V  *  I  E  G  F  P  S  *  *  N  H  P  F  P  L  Y  L  S  </second_frame>
            <third_frame>   R  K  H  I  Y  R  K  H  I  C  R  R  N  I  Y  K  K  R  R  *  D  E  I  Y  K  H  K  *  T  N  Y  S  L  N  H  T  L  H  K  I  P  K  K  I  C  S  Y  P  T  N  K  Y  L  Q  S  Q  S  R  F  T  K  T  N  I  *  S  H  *  Q  N  V  Y  R  K  Y  I  Q  D  T  N  F  S  K  P  K  P  *  S  K  R  Y  Q  K  S  K  R  K  F  Y  I  T  Q  Y  L  Q  G  Y  N  K  L  I  A  Q  P  G  T  N  P  N  L  V  A  T  C  Y  N  Y  G  L  I  S  T  V  Y  T  I  T  G  D  E  V  A  K  I  P  E  L  H  E  A  F  L  Q  Y  K  R  I  T  K  G  T  L  F  Y  I  K  F  Y  S  A  T  A  E  I  L  Y  E  E  I  K  P  T  I  Q  V  I  K  I  D  L  T  R  D  M  I  I  L  E  K  I  D  I  Q  E  E  I  Q  K  V  D  I  P  D  F  Y  A  N  K  R  T  I  G  I  A  T  I  L  N  E  L  S  N  T  T  *  M  K  M  Q  F  G  V  I  T  T  E  I  K  Q  *  Y  T  P  I  V  E  I  *  E  Q  Q  I  W  K  K  Y  D  N  G  Y  *  V  C  *  S  Q  N  K  H  L  Q  Q  E  L  S  G  K  N  S  F  L  Q  T  *  *  P  D  T  A  N  *  L  D  K  S  I  Q  I  I  Y  V  Q  N  A  T  E  K  I  T  I  F  L  K  S  S  *  N  E  D  I  C  K  V  *  I  V  V  S  V  K  Y  E  *  *  C  R  P  Y  L  K  K  Q  R  P  V  Y  K  E  V  K  L  *  I  V  C  R  P  Y  K  K  *  R  P  I  M  C  E  S  I  L  F  S  C  V  G  R  I  *  I  G  Q  V  *  S  V  V  C  K  G  V  S  A  I  W  P  K  C  *  V  F  L  Y  K  *  R  A  F  P  H  N  K  I  I  P  F  L  Y  I  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97380" stop="97823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKRYQKSKRKFYITQYLQGYNKLIAQPGTNPNLVATCYNYGLISTVYTITGDEVAKIPELHEAFLQYKRITKGTLFYIKFYSATAEILYEEIKPTIQVIKIDLTRDMIILEKIDIQEEIQKVDIPDFYANKRTIGIATILNELSNTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97805" stop="98101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKHYLNENAIWSYYNRDQTMIYSNCRDIRAADMEEVRQWILSLLKPEQTPTTRAIRKKFISPNLMTRYCKLIGQKYSDHLCTKCDGEDNYIPEVQLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="105213" PGL_stop="104872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105213" e_stop="104872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105213" e_stop="104872" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105213" stop="104872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATCCATCATGTAGATGCATTGTTTATATGAAACTTCTGGGCTAGTTAGTTGACATCAGGTTACTGCTTGCTTCATGGCTTTGGCATTTCCCTTGGATTTGTAAAATCTTTACCGTATCAGAAATCTGTGACAATCTTTACCGTGTCTGGATGTTGGTGACACTAGTTTTGGTAGTTTAGTTTCGCCTCATCGAGCTCAGGAAACCGGTTAATCAGTATGCAATTTATAAGAGTGAGGACTGAGGACTTCATTGCACTCCTTAATTTTGCAATGATATCTCCATGTCTTATTACTTCTAATATTGCACAATGAAAATTTTCTATTTATTTTGAAGGTAAT</gDNA_template>
            <first_frame> G  I  H  H  V  D  A  L  F  I  *  N  F  W  A  S  *  L  T  S  G  Y  C  L  L  H  G  F  G  I  S  L  G  F  V  K  S  L  P  Y  Q  K  S  V  T  I  F  T  V  S  G  C  W  *  H  *  F  W  *  F  S  F  A  S  S  S  S  G  N  R  L  I  S  M  Q  F  I  R  V  R  T  E  D  F  I  A  L  L  N  F  A  M  I  S  P  C  L  I  T  S  N  I  A  Q  *  K  F  S  I  Y  F  E  G  N </first_frame>
            <second_frame>  E  S  I  M  *  M  H  C  L  Y  E  T  S  G  L  V  S  *  H  Q  V  T  A  C  F  M  A  L  A  F  P  L  D  L  *  N  L  Y  R  I  R  N  L  *  Q  S  L  P  C  L  D  V  G  D  T  S  F  G  S  L  V  S  P  H  R  A  Q  E  T  G  *  S  V  C  N  L  *  E  *  G  L  R  T  S  L  H  S  L  I  L  Q  *  Y  L  H  V  L  L  L  L  I  L  H  N  E  N  F  L  F  I  L  K  V   </second_frame>
            <third_frame>   N  P  S  C  R  C  I  V  Y  M  K  L  L  G  *  L  V  D  I  R  L  L  L  A  S  W  L  W  H  F  P  W  I  C  K  I  F  T  V  S  E  I  C  D  N  L  Y  R  V  W  M  L  V  T  L  V  L  V  V  *  F  R  L  I  E  L  R  K  P  V  N  Q  Y  A  I  Y  K  S  E  D  *  G  L  H  C  T  P  *  F  C  N  D  I  S  M  S  Y  Y  F  *  Y  C  T  M  K  I  F  Y  L  F  *  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0005F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="110738" PGL_stop="105214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106758" e_stop="106092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="106758" e_stop="106092" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106758" stop="106092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106758" stop="106180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106758" stop="106200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106758" stop="106435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACATTTTGGGGGATACTGACAAAACTATTCACCAATCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCGGTCAGTTCTTTTCACAGAGCATAACAGACTTTTAGTTCATCTCATCCAATTTAGTCAGTTTATTTAGGAGATGCTTTGAACAAAATACATTATGTAATTAAGTTATGATGCAGAACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAGGTTTCTGCTTCCTCTTTTATACTAAAATGGATTCTTACACTCCTTGTCATTTTCCCCTTGTCACAAAATCAGATATATTCTAGTGATGATATTTCAATTTATCATTGGTAGGTTGGTAGGTTGCCCCCATATATAAGTTTTGTTGAATCTTGACACGTGCCAAAATTGCTGAAAAGATAACGTATAAAATAACTTCTAATTGACAGTATGAACAGTTAGTTTTCTCCATGCTTTTTATTCAGGGATCCGCTTTTGGTAAATCGG</gDNA_template>
            <first_frame> G  H  F  G  G  Y  *  Q  N  Y  S  P  I  R  N  G  Y  G  S  Q  T  R  R  H  K  E  *  G  G  K  A  P  K  *  K  A  T  N  V  A  F  S  T  D  E  T  Y  S  T  S  S  L  I  T  C  C  N  S  F  F  R  S  V  L  F  T  E  H  N  R  L  L  V  H  L  I  Q  F  S  Q  F  I  *  E  M  L  *  T  K  Y  I  M  *  L  S  Y  D  A  E  L  G  Q  M  V  C  G  G  C  Q  Q  L  L  S  Y  S  Q  G  A  K  L  V  K  C  S  C  C  Q  T  V  N  L  V  L  E  G  F  C  F  L  F  Y  T  K  M  D  S  Y  T  P  C  H  F  P  L  V  T  K  S  D  I  F  *  *  *  Y  F  N  L  S  L  V  G  W  *  V  A  P  I  Y  K  F  C  *  I  L  T  R  A  K  I  A  E  K  I  T  Y  K  I  T  S  N  *  Q  Y  E  Q  L  V  F  S  M  L  F  I  Q  G  S  A  F  G  K  S  </first_frame>
            <second_frame>  D  I  L  G  D  T  D  K  T  I  H  Q  S  E  M  D  M  G  R  K  Q  E  G  T  K  N  E  E  E  R  P  P  S  E  K  Q  P  M  S  H  L  V  Q  M  K  P  I  V  P  Q  A  S  S  H  A  A  T  V  S  S  G  Q  F  F  S  Q  S  I  T  D  F  *  F  I  S  S  N  L  V  S  L  F  R  R  C  F  E  Q  N  T  L  C  N  *  V  M  M  Q  N  W  V  R  W  Y  V  V  V  A  N  S  Y  F  L  I  H  K  G  L  N  W  *  S  V  H  A  A  R  P  S  I  L  C  *  K  V  S  A  S  S  F  I  L  K  W  I  L  T  L  L  V  I  F  P  L  S  Q  N  Q  I  Y  S  S  D  D  I  S  I  Y  H  W  *  V  G  R  L  P  P  Y  I  S  F  V  E  S  *  H  V  P  K  L  L  K  R  *  R  I  K  *  L  L  I  D  S  M  N  S  *  F  S  P  C  F  L  F  R  D  P  L  L  V  N  R </second_frame>
            <third_frame>   T  F  W  G  I  L  T  K  L  F  T  N  Q  K  W  I  W  V  A  N  K  K  A  Q  R  M  R  R  K  G  P  Q  V  K  S  N  Q  C  R  I  *  Y  R  *  N  L  *  Y  L  K  P  H  H  M  L  Q  Q  F  L  P  V  S  S  F  H  R  A  *  Q  T  F  S  S  S  H  P  I  *  S  V  Y  L  G  D  A  L  N  K  I  H  Y  V  I  K  L  *  C  R  T  G  S  D  G  M  W  W  L  P  T  V  T  F  L  F  T  R  G  *  I  G  E  V  F  M  L  P  D  R  Q  S  C  A  R  R  F  L  L  P  L  L  Y  *  N  G  F  L  H  S  L  S  F  S  P  C  H  K  I  R  Y  I  L  V  M  I  F  Q  F  I  I  G  R  L  V  G  C  P  H  I  *  V  L  L  N  L  D  T  C  Q  N  C  *  K  D  N  V  *  N  N  F  *  L  T  V  *  T  V  S  F  L  H  A  F  Y  S  G  I  R  F  W  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106757" stop="106542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DILGDTDKTIHQSEMDMGRKQEGTKNEEERPPSEKQPMSHLVQMKPIVPQASSHAATVSSGQFFSQSITDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106479" stop="106273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSYDAELGQMVCGGCQQLLSYSQGAKLVKCSCCQTVNLVLEGFCFLFYTKMDSYTPCHFPLVTKSDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108736" e_stop="108704"/>
            <exon e_start="108108" e_stop="107971"/>
            <exon e_start="107041" e_stop="106941"/>
            <exon e_start="106866" e_stop="106822"/>
            <exon e_start="106721" e_stop="106577"/>
            <exon e_start="106463" e_stop="106356"/>
            <exon e_start="105797" e_stop="105688"/>
            <exon e_start="105310" e_stop="105214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.539" e_score="0.970"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.917" acc_prob="0.000" e_score="0.802"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.467"/>
          <exon-intron don_prob="0.959" acc_prob="0.509" e_score="0.959"/>
          <exon-intron don_prob="0.968" acc_prob="0.395" e_score="0.963"/>
          <exon-intron don_prob="0.957" acc_prob="0.927" e_score="0.964"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="108736" e_stop="108704" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.539">
            <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="108108" e_stop="107971" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107970" i_stop="107042" i_length="929"/>
          </intron>
          <exon e_serial="3" e_score="0.802">
            <gDNA_exon_boundary e_start="107041" e_stop="106941" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.917" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106940" i_stop="106867" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="0.467">
            <gDNA_exon_boundary e_start="106866" e_stop="106822" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106821" i_stop="106722" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="106721" e_stop="106577" e_length="145"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.509">
            <gDNA_intron_boundary i_start="106576" i_stop="106464" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="0.963">
            <gDNA_exon_boundary e_start="106463" e_stop="106356" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.395">
            <gDNA_intron_boundary i_start="106355" i_stop="105798" i_length="558"/>
          </intron>
          <exon e_serial="7" e_score="0.964">
            <gDNA_exon_boundary e_start="105797" e_stop="105688" e_length="110"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.927">
            <gDNA_intron_boundary i_start="105687" i_stop="105311" i_length="377"/>
          </intron>
          <exon e_serial="8" e_score="0.907">
            <gDNA_exon_boundary e_start="105310" e_stop="105214" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108736" stop="108704"/>
              <exon start="108108" stop="107971"/>
              <exon start="107041" stop="106941"/>
              <exon start="106866" stop="106822"/>
              <exon start="106721" stop="106577"/>
              <exon start="106463" stop="106356"/>
              <exon start="105797" stop="105688"/>
              <exon start="105310" stop="105214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108736" stop="108704"/>
              <exon start="108108" stop="107971"/>
              <exon start="107041" stop="106941"/>
              <exon start="106866" stop="106822"/>
              <exon start="106721" stop="106577"/>
              <exon start="106463" stop="106356"/>
              <exon start="105797" stop="105688"/>
              <exon start="105310" stop="105272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCATCATGGACACAAGGAGCTTCTCTTGAAG : ATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTG : CTTTTGTAGACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATCGCCTACACCACCACTGCAGTCGTCATCACCG : TGAACCCCTGTTTCATGCCAAGGAGTTCAAGATAAGATTGACTTT : TCAGAAATGGATATGGGTCGCAAACAAGAAGGCACAAAGAATGAGGAGGAAAGGCCCCCAAGTGAAAAGCAACCAATGTCGCATTTAGTACAGATGAAACCTATAGTACCTCAAGCCTCATCACATGCTGCAACAGTTTCTTCCG : AACTGGGTCAGATGGTATGTGGTGGTTGCCAACAGTTACTTTCTTATTCACAAGGGGCTAAATTGGTGAAGTGTTCATGCTGCCAGACCGTCAATCTTGTGCTAGAAG : CTCATGAGGTTGGACAAGTTAAGTGTGGGGGTTGTGCAGTGCTGCTCATGTATCCGTATGGGGCGCCATCAGTTAGATGTTCATCTTGTCGTCACATGACAAAAATTTGG : GCCCACAACAGACGACCTCCTCAGTCAGTGCAACAGCCTCGAAGAAGACATCCTTCCTACCAAGTTCATTAGCTTGCTTATCTCGATCTGATTTTGG</gDNA_template>
            <first_frame> H  H  H  G  H  K  E  L  L  L  K  :  I  *  K  W  R  R  K  R  K  P  L  K  M  K  I  M  V  H  R  Q  D  G  N  *  P  L  N  Y  C  L  Y  R  H  L  H  H  H  Q  G  Y  K  E  R  L  L  L  :  L  L  *  T  L  K  W  R  A  T  R  T  V  M  L  K  R  K  D  I  H  W  D  R  L  H  H  H  C  S  R  H  H  R :   E  P  L  F  H  A  K  E  F  K  I  R  L  T  F :   Q  K  W  I  W  V  A  N  K  K  A  Q  R  M  R  R  K  G  P  Q  V  K  S  N  Q  C  R  I  *  Y  R  *  N  L  *  Y  L  K  P  H  H  M  L  Q  Q  F  L  P  :  N  W  V  R  W  Y  V  V  V  A  N  S  Y  F  L  I  H  K  G  L  N  W  *  S  V  H  A  A  R  P  S  I  L  C  *  K  :  L  M  R  L  D  K  L  S  V  G  V  V  Q  C  C  S  C  I  R  M  G  R  H  Q  L  D  V  H  L  V  V  T  *  Q  K  F  G :   P  T  T  D  D  L  L  S  Q  C  N  S  L  E  E  D  I  L  P  T  K  F  I  S  L  L  I  S  I  *  F  W </first_frame>
            <second_frame>  T  I  M  D  T  R  S  F  S  *  R :   Y  R  N  G  E  E  R  G  S  R  *  R  *  R  *  W  S  T  A  R  M  A  I  D  P  S  T  T  A  S  T  D  I  Y  T  T  I  R  D  T  R  S  A  S  C  C :   F  C  R  R  *  N  G  E  Q  P  G  L  *  C  *  K  G  R  T  S  T  G  I  A  Y  T  T  T  A  V  V  I  T   : V  N  P  C  F  M  P  R  S  S  R  *  D  *  L   : F  R  N  G  Y  G  S  Q  T  R  R  H  K  E  *  G  G  K  A  P  K  *  K  A  T  N  V  A  F  S  T  D  E  T  Y  S  T  S  S  L  I  T  C  C  N  S  F  F  R :   T  G  S  D  G  M  W  W  L  P  T  V  T  F  L  F  T  R  G  *  I  G  E  V  F  M  L  P  D  R  Q  S  C  A  R  S :   S  *  G  W  T  S  *  V  W  G  L  C  S  A  A  H  V  S  V  W  G  A  I  S  *  M  F  I  L  S  S  H  D  K  N  L   : G  P  Q  Q  T  T  S  S  V  S  A  T  A  S  K  K  T  S  F  L  P  S  S  L  A  C  L  S  R  S  D  F   </second_frame>
            <third_frame>   P  S  W  T  Q  G  A  S  L  E   : D  I  E  M  E  K  K  E  E  A  V  E  D  E  D  N  G  P  P  P  G  W  Q  L  T  P  Q  L  L  P  L  Q  T  S  T  P  P  S  G  I  Q  G  A  P  L  A   : A  F  V  D  V  E  M  A  S  N  Q  D  C  D  V  E  K  E  G  H  P  L  G  S  P  T  P  P  L  Q  S  S  S  P  :  *  T  P  V  S  C  Q  G  V  Q  D  K  I  D  F  :  S  E  M  D  M  G  R  K  Q  E  G  T  K  N  E  E  E  R  P  P  S  E  K  Q  P  M  S  H  L  V  Q  M  K  P  I  V  P  Q  A  S  S  H  A  A  T  V  S  S   : E  L  G  Q  M  V  C  G  G  C  Q  Q  L  L  S  Y  S  Q  G  A  K  L  V  K  C  S  C  C  Q  T  V  N  L  V  L  E   : A  H  E  V  G  Q  V  K  C  G  G  C  A  V  L  L  M  Y  P  Y  G  A  P  S  V  R  C  S  S  C  R  H  M  T  K  I  W  :  A  H  N  R  R  P  P  Q  S  V  Q  Q  P  R  R  R  H  P  S  Y  Q  V  H  *  L  A  Y  L  D  L  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106863" stop="106822"/>
                    <exon start="106721" stop="106577"/>
                    <exon start="106463" stop="106356"/>
                    <exon start="105797" stop="105688"/>
                    <exon start="105310" stop="105239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPVSCQGVQDKIDFSEMDMGRKQEGTKNEEERPPSEKQPMSHLVQMKPIVPQASSHAATVSSELGQMVCGGCQQLLSYSQGAKLVKCSCCQTVNLVLEAHEVGQVKCGGCAVLLMYPYGAPSVRCSSCRHMTKIWAHNRRPPQSVQQPRRRHPSYQVH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108734" stop="108704"/>
                    <exon start="108108" stop="107971"/>
                    <exon start="107041" stop="106941"/>
                    <exon start="106866" stop="106864"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSWTQGASLEDIEMEKKEEAVEDEDNGPPPGWQLTPQLLPLQTSTPPSGIQGAPLAAFVDVEMASNQDCDVEKEGHPLGSPTPPLQSSSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109997" e_stop="109862"/>
            <exon e_start="108841" e_stop="108704"/>
            <exon e_start="108108" e_stop="107971"/>
            <exon e_start="107819" e_stop="107815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.919"/>
          <exon-intron don_prob="0.995" acc_prob="0.539" e_score="0.935"/>
          <exon-intron don_prob="0.994" acc_prob="0.760" e_score="0.978"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="109997" e_stop="109862" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="109861" i_stop="108842" i_length="1020"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="108841" e_stop="108704" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.539">
            <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="108108" e_stop="107971" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.760">
            <gDNA_intron_boundary i_start="107970" i_stop="107820" i_length="151"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="107819" e_stop="107815" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109997" stop="109862"/>
              <exon start="108841" stop="108704"/>
              <exon start="108108" stop="107971"/>
              <exon start="107819" stop="107815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACTGATGTAGAGATGGGGAGCAAAGAACACAAATCGGAAGATGATGAAGATGGTCCGCCACCTGGGTGGAACACTGTAATCTCACAGAAAAAATCGCCATCTTCACCGCCAACCCTAGAAGCAGTTATTTGTG : ATATAGAAATGGAGAAGAAAGAAGAAATCATTAAAAATGAAGATAATGGTCCACCGCCGATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAAACATCTACACCACCATCATGGACACAAGGAGCTTCTCTTGAAG : ATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTG : ACCTT</gDNA_template>
            <first_frame> T  T  D  V  E  M  G  S  K  E  H  K  S  E  D  D  E  D  G  P  P  P  G  W  N  T  V  I  S  Q  K  K  S  P  S  S  P  P  T  L  E  A  V  I  C   : D  I  E  M  E  K  K  E  E  I  I  K  N  E  D  N  G  P  P  P  I  W  Q  L  T  P  K  L  P  A  L  Q  T  S  T  P  P  S  W  T  Q  G  A  S  L  E   : D  I  E  M  E  K  K  E  E  A  V  E  D  E  D  N  G  P  P  P  G  W  Q  L  T  P  Q  L  L  P  L  Q  T  S  T  P  P  S  G  I  Q  G  A  P  L  A   : D  L </first_frame>
            <second_frame>  L  L  M  *  R  W  G  A  K  N  T  N  R  K  M  M  K  M  V  R  H  L  G  G  T  L  *  S  H  R  K  N  R  H  L  H  R  Q  P  *  K  Q  L  F  V  :  I  *  K  W  R  R  K  K  K  S  L  K  M  K  I  M  V  H  R  R  Y  G  S  *  P  L  N  C  Q  R  Y  K  H  L  H  H  H  H  G  H  K  E  L  L  L  K  :  I  *  K  W  R  R  K  R  K  P  L  K  M  K  I  M  V  H  R  Q  D  G  N  *  P  L  N  Y  C  L  Y  R  H  L  H  H  H  Q  G  Y  K  E  R  L  L  L  :  T   </second_frame>
            <third_frame>   Y  *  C  R  D  G  E  Q  R  T  Q  I  G  R  *  *  R  W  S  A  T  W  V  E  H  C  N  L  T  E  K  I  A  I  F  T  A  N  P  R  S  S  Y  L  * :   Y  R  N  G  E  E  R  R  N  H  *  K  *  R  *  W  S  T  A  D  M  A  V  D  P  *  T  A  S  A  T  N  I  Y  T  T  I  M  D  T  R  S  F  S  *  R :   Y  R  N  G  E  E  R  G  S  R  *  R  *  R  *  W  S  T  A  R  M  A  I  D  P  S  T  T  A  S  T  D  I  Y  T  T  I  R  D  T  R  S  A  S  C  * :   P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109997" stop="109862"/>
                    <exon start="108841" stop="108704"/>
                    <exon start="108108" stop="107971"/>
                    <exon start="107819" stop="107815"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTDVEMGSKEHKSEDDEDGPPPGWNTVISQKKSPSSPPTLEAVICDIEMEKKEEIIKNEDNGPPPIWQLTPKLPALQTSTPPSWTQGASLEDIEMEKKEEAVEDEDNGPPPGWQLTPQLLPLQTSTPPSGIQGAPLADL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="110738" e_stop="110530"/>
            <exon e_start="109997" e_stop="109862"/>
            <exon e_start="108841" e_stop="108704"/>
            <exon e_start="108108" e_stop="107971"/>
            <exon e_start="107032" e_stop="106959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.933"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.941"/>
          <exon-intron don_prob="0.995" acc_prob="0.539" e_score="0.942"/>
          <exon-intron don_prob="0.994" acc_prob="0.911" e_score="0.949"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="110738" e_stop="110530" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="110529" i_stop="109998" i_length="532"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="109997" e_stop="109862" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="109861" i_stop="108842" i_length="1020"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="108841" e_stop="108704" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.539">
            <gDNA_intron_boundary i_start="108703" i_stop="108109" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="108108" e_stop="107971" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.911">
            <gDNA_intron_boundary i_start="107970" i_stop="107033" i_length="938"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="107032" e_stop="106959" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110738" stop="110530"/>
              <exon start="109997" stop="109862"/>
              <exon start="108841" stop="108704"/>
              <exon start="108108" stop="107971"/>
              <exon start="107032" stop="106959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAAGAGCAAAAAAAAAAAATGGAAGAAAAGTTGAGCCACATCGAAAATCAGCAATTAGATGATGATGAAGAAGAAGATGAGGGTCCACCGCCTGGTTTCGACTCTTTAGCTGTACCATCGCAAAACACCAATGTCGTCATAGATGAAGATGATGATGAAGGACCACCTCCAGGTTGGCCATCAATTCCTCAGCAACACAACCTCCAG : ACTACTGATGTAGAGATGGGGAGCAAAGAACACAAATCGGAAGATGATGAAGATGGTCCGCCACCTGGGTGGAACACTGTAATCTCACAGAAAAAATCGCCATCTTCACCGCCAACCCTAGAAGCAGTTATTTGTG : ATATAGAAATGGAGAAGAAAGAAGAAATCATTAAAAATGAAGATAATGGTCCACCGCCGATATGGCAGTTGACCCCTAAACTGCCAGCGCTACAAACATCTACACCACCATCATGGACACAAGGAGCTTCTCTTGAAG : ATATAGAAATGGAGAAGAAAGAGGAAGCCGTTGAAGATGAAGATAATGGTCCACCGCCAGGATGGCAATTGACCCCTCAACTACTGCCTCTACAGACATCTACACCACCATCAGGGATACAAGGAGCGCCTCTTGCTG : ACGTTGAAATGGCGAGCAACCAGGACTGTGATGTTGAAAAGGAAGGACATCCACTGGGATCGCCTACACCACCA</gDNA_template>
            <first_frame> C  K  S  K  K  K  K  W  K  K  S  *  A  T  S  K  I  S  N  *  M  M  M  K  K  K  M  R  V  H  R  L  V  S  T  L  *  L  Y  H  R  K  T  P  M  S  S  *  M  K  M  M  M  K  D  H  L  Q  V  G  H  Q  F  L  S  N  T  T  S  R :   L  L  M  *  R  W  G  A  K  N  T  N  R  K  M  M  K  M  V  R  H  L  G  G  T  L  *  S  H  R  K  N  R  H  L  H  R  Q  P  *  K  Q  L  F  V  :  I  *  K  W  R  R  K  K  K  S  L  K  M  K  I  M  V  H  R  R  Y  G  S  *  P  L  N  C  Q  R  Y  K  H  L  H  H  H  H  G  H  K  E  L  L  L  K  :  I  *  K  W  R  R  K  R  K  P  L  K  M  K  I  M  V  H  R  Q  D  G  N  *  P  L  N  Y  C  L  Y  R  H  L  H  H  H  Q  G  Y  K  E  R  L  L  L  :  T  L  K  W  R  A  T  R  T  V  M  L  K  R  K  D  I  H  W  D  R  L  H  H   </first_frame>
            <second_frame>  V  R  A  K  K  K  N  G  R  K  V  E  P  H  R  K  S  A  I  R  *  *  *  R  R  R  *  G  S  T  A  W  F  R  L  F  S  C  T  I  A  K  H  Q  C  R  H  R  *  R  *  *  *  R  T  T  S  R  L  A  I  N  S  S  A  T  Q  P  P   : D  Y  *  C  R  D  G  E  Q  R  T  Q  I  G  R  *  *  R  W  S  A  T  W  V  E  H  C  N  L  T  E  K  I  A  I  F  T  A  N  P  R  S  S  Y  L  * :   Y  R  N  G  E  E  R  R  N  H  *  K  *  R  *  W  S  T  A  D  M  A  V  D  P  *  T  A  S  A  T  N  I  Y  T  T  I  M  D  T  R  S  F  S  *  R :   Y  R  N  G  E  E  R  G  S  R  *  R  *  R  *  W  S  T  A  R  M  A  I  D  P  S  T  T  A  S  T  D  I  Y  T  T  I  R  D  T  R  S  A  S  C  * :   R  *  N  G  E  Q  P  G  L  *  C  *  K  G  R  T  S  T  G  I  A  Y  T  T  </second_frame>
            <third_frame>   *  E  Q  K  K  K  M  E  E  K  L  S  H  I  E  N  Q  Q  L  D  D  D  E  E  E  D  E  G  P  P  P  G  F  D  S  L  A  V  P  S  Q  N  T  N  V  V  I  D  E  D  D  D  E  G  P  P  P  G  W  P  S  I  P  Q  Q  H  N  L  Q  :  T  T  D  V  E  M  G  S  K  E  H  K  S  E  D  D  E  D  G  P  P  P  G  W  N  T  V  I  S  Q  K  K  S  P  S  S  P  P  T  L  E  A  V  I  C   : D  I  E  M  E  K  K  E  E  I  I  K  N  E  D  N  G  P  P  P  I  W  Q  L  T  P  K  L  P  A  L  Q  T  S  T  P  P  S  W  T  Q  G  A  S  L  E   : D  I  E  M  E  K  K  E  E  A  V  E  D  E  D  N  G  P  P  P  G  W  Q  L  T  P  Q  L  L  P  L  Q  T  S  T  P  P  S  G  I  Q  G  A  P  L  A   : D  V  E  M  A  S  N  Q  D  C  D  V  E  K  E  G  H  P  L  G  S  P  T  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110733" stop="110530"/>
                    <exon start="109997" stop="109862"/>
                    <exon start="108841" stop="108704"/>
                    <exon start="108108" stop="107971"/>
                    <exon start="107032" stop="106959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKKKMEEKLSHIENQQLDDDEEEDEGPPPGFDSLAVPSQNTNVVIDEDDDEGPPPGWPSIPQQHNLQTTDVEMGSKEHKSEDDEDGPPPGWNTVISQKKSPSSPPTLEAVICDIEMEKKEEIIKNEDNGPPPIWQLTPKLPALQTSTPPSWTQGASLEDIEMEKKEEAVEDEDNGPPPGWQLTPQLLPLQTSTPPSGIQGAPLADVEMASNQDCDVEKEGHPLGSPTPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="105619" PGL_stop="106361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105619" e_stop="106361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="105619" e_stop="106361" e_length="743"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105619" stop="106361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAAAAAATGTCATATGATTAATTGACATGACTGCACAAGTATTTCTGAAGAAATGAAGTCCATACCCAAATTTTTGTCATGTGACGACAAGATGAACATCTAACTGATGGCGCCCCATACGGATACATGAGCAGCACTGCACAACCCCCACACTTAACTTGTCCAACCTCATGAGCTGCAGTGAGAACAATCAGAACCACGTGAGTGAGCCCCCCATAGAAATGAGTCGATGGTCTTCAACCATCAAATTCTCCAGGATAGTTGTACAGATCCATGAAAACAAGAAAGTGAAGCAAATGTCTGTTTCCTATTTATTTCCTCTCTATCCAAGTATGAGTGGTCTGGTATGCCAGTTCACAATAGATACAGAACTTACAGTATCAGAAGGAAAAATCAGAATGAAGCTGCACCACACGGTTATTTTACATCAGTTGTTCCTAACGTACTTAAACATATTGATAACAGGGCTCCGATTTACCAAAAGCGGATCCCTGAATAAAAAGCATGGAGAAAACTAACTGTTCATACTGTCAATTAGAAGTTATTTTATACGTTATCTTTTCAGCAATTTTGGCACGTGTCAAGATTCAACAAAACTTATATATGGGGGCAACCTACCAACCTACCAATGATAAATTGAAATATCATCACTAGAATATATCTGATTTTGTGACAAGGGGAAAATGACAAGGAGTGTAAGAATCCATTTTAGTATAAAAGAGGAAGCAGAAACCTTCTA</gDNA_template>
            <first_frame> P  K  K  N  V  I  *  L  I  D  M  T  A  Q  V  F  L  K  K  *  S  P  Y  P  N  F  C  H  V  T  T  R  *  T  S  N  *  W  R  P  I  R  I  H  E  Q  H  C  T  T  P  T  L  N  L  S  N  L  M  S  C  S  E  N  N  Q  N  H  V  S  E  P  P  I  E  M  S  R  W  S  S  T  I  K  F  S  R  I  V  V  Q  I  H  E  N  K  K  V  K  Q  M  S  V  S  Y  L  F  P  L  Y  P  S  M  S  G  L  V  C  Q  F  T  I  D  T  E  L  T  V  S  E  G  K  I  R  M  K  L  H  H  T  V  I  L  H  Q  L  F  L  T  Y  L  N  I  L  I  T  G  L  R  F  T  K  S  G  S  L  N  K  K  H  G  E  N  *  L  F  I  L  S  I  R  S  Y  F  I  R  Y  L  F  S  N  F  G  T  C  Q  D  S  T  K  L  I  Y  G  G  N  L  P  T  Y  Q  *  *  I  E  I  S  S  L  E  Y  I  *  F  C  D  K  G  K  M  T  R  S  V  R  I  H  F  S  I  K  E  E  A  E  T  F   </first_frame>
            <second_frame>  Q  K  K  M  S  Y  D  *  L  T  *  L  H  K  Y  F  *  R  N  E  V  H  T  Q  I  F  V  M  *  R  Q  D  E  H  L  T  D  G  A  P  Y  G  Y  M  S  S  T  A  Q  P  P  H  L  T  C  P  T  S  *  A  A  V  R  T  I  R  T  T  *  V  S  P  P  *  K  *  V  D  G  L  Q  P  S  N  S  P  G  *  L  Y  R  S  M  K  T  R  K  *  S  K  C  L  F  P  I  Y  F  L  S  I  Q  V  *  V  V  W  Y  A  S  S  Q  *  I  Q  N  L  Q  Y  Q  K  E  K  S  E  *  S  C  T  T  R  L  F  Y  I  S  C  S  *  R  T  *  T  Y  *  *  Q  G  S  D  L  P  K  A  D  P  *  I  K  S  M  E  K  T  N  C  S  Y  C  Q  L  E  V  I  L  Y  V  I  F  S  A  I  L  A  R  V  K  I  Q  Q  N  L  Y  M  G  A  T  Y  Q  P  T  N  D  K  L  K  Y  H  H  *  N  I  S  D  F  V  T  R  G  K  *  Q  G  V  *  E  S  I  L  V  *  K  R  K  Q  K  P  S  </second_frame>
            <third_frame>   K  K  K  C  H  M  I  N  *  H  D  C  T  S  I  S  E  E  M  K  S  I  P  K  F  L  S  C  D  D  K  M  N  I  *  L  M  A  P  H  T  D  T  *  A  A  L  H  N  P  H  T  *  L  V  Q  P  H  E  L  Q  *  E  Q  S  E  P  R  E  *  A  P  H  R  N  E  S  M  V  F  N  H  Q  I  L  Q  D  S  C  T  D  P  *  K  Q  E  S  E  A  N  V  C  F  L  F  I  S  S  L  S  K  Y  E  W  S  G  M  P  V  H  N  R  Y  R  T  Y  S  I  R  R  K  N  Q  N  E  A  A  P  H  G  Y  F  T  S  V  V  P  N  V  L  K  H  I  D  N  R  A  P  I  Y  Q  K  R  I  P  E  *  K  A  W  R  K  L  T  V  H  T  V  N  *  K  L  F  Y  T  L  S  F  Q  Q  F  W  H  V  S  R  F  N  K  T  Y  I  W  G  Q  P  T  N  L  P  M  I  N  *  N  I  I  T  R  I  Y  L  I  L  *  Q  G  E  N  D  K  E  C  K  N  P  F  *  Y  K  R  G  S  R  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0005F12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105730" stop="106140"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRPIRIHEQHCTTPTLNLSNLMSCSENNQNHVSEPPIEMSRWSSTIKFSRIVVQIHENKKVKQMSVSYLFPLYPSMSGLVCQFTIDTELTVSEGKIRMKLHHTVILHQLFLTYLNILITGLRFTKSGSLNKKHGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 294 chains have been computed
$ 
$ memory statistics:
$ 549376 bytes spliced alignments in total
$ 220 spliced alignments have been stored
$ 2497 bytes was the average size of a spliced alignment
$ 43352 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1806 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 322 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:35:32
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