<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:35:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426598" ref_strand="+" ref_description="SGN-E426598 [STM-46-H20]">
      <seq>gatatatatatacatatatagagagagaaacaaagagtaagagagactaaaccctagatttcattctgactgaaagcagagtattttgtattttgaccaacaaagagctttgtttacatcaaatttttccgtcattattcataaagatccttttgaaatgtactcagtttgataatcaagaacaggctattgggtttggttggtgggtgtgattcagtctgaggaagtttgaacagaaaaaaggttactgtttggtctgtcttctaatttgaggatctgctgaaggagtttttgcaaataaaggcttgtaaagatgatgtccaaatcttataccaacttgctagatctagcatctgggaatttcccggtgatggggcgtngaaagaagcggctgccacgggtaatgacagttgctggagttatttctgagcttgatgatgatcaagctaatagtgttacatcagatgttccatcatcaattattgtagatcgaataattatagtggctaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="4885" stop="6324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5184" g_stop="5333" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5334" i_stop="5625" i_length="292">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5626" g_stop="6024" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="514" r_length="368" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E426598" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.068" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5184" e_stop="5333"/>
          <exon e_start="5626" e_stop="6024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATACATATAACATATATAGAGAGAGAAACAAAGAGTAAGAGAGACTAAACCCTAGATTTCATTCTGACTGAAAGCAGAGTATTTTGTATTTTGACCAACAAAGAGCTGTGTTTACATCTAATTTTTTTTCCGTCATTATTCATAAAGGTAAGTGATTAAAGTTTTTATTTTTTGAACACTTTATTAGTGTTAATGTTGTTTTATGTAATAAATGTTATGTGAAAAGAATAAAAAAATTGCTAATGGAGTTGTTTATATGTATGGTGATTATTAGGTGTAGGTTGGATTTGATCTTGTTTTTTTTTTTTAAAGATTGAAGTTTTTAACTATATTTTGTGAATGGGTTTCTGTTTTATTGATTGGATCATGTTTTTTGTTACTCTTTTGCTTGAAGTTTAATGAGTTAATTTTGATTCTTGGATTATACTCATTTTTTCAGATCTTTTTGAAATGTACTCAGTTTGATAAACAAGAAGAGGCTATTGGGTTTTGGTTGGTGGGTGTGATTCAGTCTGAGGAAGTTGTTTTGTGATGTATGTGGATTGAGTTTTTTGAAGAGAAAAAAAGTTTCTGTTTGGTCTGTTTTCTAATTTGAGGATCTGCTGAAGGAGTTTTTGCAAATAAAGGGCTTGTAAAGATGATGTCCAAATCTTATACCAACTTGCTAGATCTAGCATCTGGGAATTTCCCGGTGATGGGGCGGGAAAAGAAGCGGCTGCCACGGGTAATGACAGTTGCTGGAGTTATTTCTGAGCTTGATGATGATCAAGCTAATAGTGTTACATCAGATGTTCCATCATCAATTATTGTAGATCGAATAATTATAGTGGCTAATCAG</genome_strand>
        <mrna_strand>GATATATATAT-ACATATATAGAGAGAGAAACAAAGAGTAAGAGAGACTAAACCCTAGATTTCATTCTGACTGAAAGCAGAGTATTTTGTATTTTGACCAACAAAGAGCTTTGTTTACATC-AA--ATTTTTCCGTCATTATTCATAAAG....................................................................................................................................................................................................................................................................................................ATCCTTTTGAAATGTACTCAGTTTGATAATCAAGAACAGGCTATTGGG-TTTGGTTGGTGGGTGTGATTCAGTC-------------------TG-A---GGA---AG---TTTGAACAGAAAAAAGGTTACTGTTTGGTCTGTCTTCTAATTTGAGGATCTGCTGAAGGAGTTTTTGCAAATAAA-GGCTTGTAAAGATGATGTCCAAATCTTATACCAACTTGCTAGATCTAGCATCTGGGAATTTCCCGGTGATGGGGCGTNGAAAGAAGCGGCTGCCACGGGTAATGACAGTTGCTGGAGTTATTTCTGAGCTTGATGATGATCAAGCTAATAGTGTTACATCAGATGTTCCATCATCAATTATTGTAGATCGAATAATTATAGTGGCTAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483093" ref_strand="+" ref_description="SGN-E483093 [cSTE-7-N12]">
      <seq>tacttttgtattttgaccaacaaagagctttgtttacactcaaatttttccgtcattattcataaagatccttttgaaatgtactcagtttgataatcaagaaacaggctattgggtttggttggtgggtgtgattcagtctgaggaagtttgaacagaaaaaaggttactgtttggtctgtcttctaatttgaggatctgctgaaggagtttttgcaaataaaggcttgtaaagatgatgtccaaatcttataccaacttgctagatctagcatctgggaatttcccggtgatggggcgtgaaaagaagcggctgccacgggtaatgacagttgctggagttatttctgagcttgatgatgatcaagctaatagtgttacatcagatgttccatcatcaattattgtagatcgaataattatagtggctaatcagctccctgtaaaagctaagcgtaggtcggataataaaggatggagttttagttgggatgaggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="4965" stop="6389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5266" g_stop="5333" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5334" i_stop="5625" i_length="292">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.957" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5626" g_stop="6090" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="502" r_length="435" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E483093" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.062" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5266" e_stop="5333"/>
          <exon e_start="5626" e_stop="6090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TA-TTTTGTATTTTGACCAACAAAGAGCTGTGTTTACATCTAATTTTTTTTCCGTCATTATTCATAAAGGTAAGTGATTAAAGTTTTTATTTTTTGAACACTTTATTAGTGTTAATGTTGTTTTATGTAATAAATGTTATGTGAAAAGAATAAAAAAATTGCTAATGGAGTTGTTTATATGTATGGTGATTATTAGGTGTAGGTTGGATTTGATCTTGTTTTTTTTTTTTAAAGATTGAAGTTTTTAACTATATTTTGTGAATGGGTTTCTGTTTTATTGATTGGATCATGTTTTTTGTTACTCTTTTGCTTGAAGTTTAATGAGTTAATTTTGATTCTTGGATTATACTCATTTTTTCAGATCTTTTTGAAATGTACTCAGTTTGATAAACAAG-AAGAGGCTATTGGGTTTTGGTTGGTGGGTGTGATTCAGTCTGAGGAAGTTGTTTTGTGATGTATGTGGATTGAGTTTTTTGAAGAGAAAAAAAGTTTCTGTTTGGTCTGTTTTCTAATTTGAGGATCTGCTGAAGGAGTTTTTGCAAATAAAGGGCTTGTAAAGATGATGTCCAAATCTTATACCAACTTGCTAGATCTAGCATCTGGGAATTTCCCGGTGATGGGGCGGGAAAAGAAGCGGCTGCCACGGGTAATGACAGTTGCTGGAGTTATTTCTGAGCTTGATGATGATCAAGCTAATAGTGTTACATCAGATGTTCCATCATCAATTATTGTAGATCGAATAATTATAGTGGCTAATCAGCTCCCTGTAAAAGCTAAGCGTAGGTCGGATAATAAAGGATGGAATTTTAGTTGGGATGAGGATTCG</genome_strand>
        <mrna_strand>TACTTTTGTATTTTGACCAACAAAGAGCTTTGTTTACA-CTCA-AATTTTTCCGTCATTATTCATAAAG....................................................................................................................................................................................................................................................................................................ATCCTTTTGAAATGTACTCAGTTTGATAATCAAGAAACAGGCTATTGGG-TTTGGTTGGTGGGTGTGATTCAGTCTGAGGAA---G--TT-TGA---A-----------------CA-GA-AA-AAAGGTTACTGTTTGGTCTGTCTTCTAATTTGAGGATCTGCTGAAGGAGTTTTTGCAAATAAA-GGCTTGTAAAGATGATGTCCAAATCTTATACCAACTTGCTAGATCTAGCATCTGGGAATTTCCCGGTGATGGGGCGTGAAAAGAAGCGGCTGCCACGGGTAATGACAGTTGCTGGAGTTATTTCTGAGCTTGATGATGATCAAGCTAATAGTGTTACATCAGATGTTCCATCATCAATTATTGTAGATCGAATAATTATAGTGGCTAATCAGCTCCCTGTAAAAGCTAAGCGTAGGTCGGATAATAAAGGATGGAGTTTTAGTTGGGATGAGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210543" ref_strand="+" ref_description="SGN-E210543 [cLEC-35-B12]">
      <seq>tgcacataaaagatgggttgccagatgatatggaagttctctatgttggttctttaaaggttgaggtcgattcaagtgaacaggatgatgtttcacagttgctgctggatagatttaaatgtgttcctgcttttctacctccagacattttatctaaatattatcacggtttttgcaaacagcatttatggcctcttttccattatatgcttccctactctgctagtcatggcagtcgatttgatcggtcgtggtgggaggcatatgttgcagcaaacaagatattttcccagaaggttattgaggtgataaatcccgaggatgactatgtctggatccatgattatcatttaatggttttacctacattcttgcgtaggcgtttcaatcggctgcgaatggggttctttctgcatagccctttcccttcatcagagatatataggacgcttccagtgagagaggagattctcaaggccctactgaattctgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="5798" stop="6895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6098" g_stop="6595" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E210543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6098" e_stop="6595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACATAAAAGATGGGTTGCCAGATGATATGGAAGTTCTCTATGTTGGTTCTTTAAAGGTTGAGGTCGATTCAAGTGAACAGGATGATGTTTCACAGTTGCTGCTGGATAGATTTAAATGTGTTCCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGA</genome_strand>
        <mrna_strand>TGCACATAAAAGATGGGTTGCCAGATGATATGGAAGTTCTCTATGTTGGTTCTTTAAAGGTTGAGGTCGATTCAAGTGAACAGGATGATGTTTCACAGTTGCTGCTGGATAGATTTAAATGTGTTCCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283552" ref_strand="+" ref_description="SGN-E283552 [cLER-12-D8]">
      <seq>cctgcttttctacctccagacattttatctaaatattatcacggtttttgcaaacagcatttatggcctcttttccattatatgcttccctactctgctagtcatggcagtcgatttgatcggtcgtggtgggaggcatatgttgcagcaaacaagatattttcccagaaggttattgaggtgataaatcccgaggatgactatgtctggatccatgattatcatttaatggttttacctacattcttgcgtaggcgtttcaatcggctgcgaatggggttctttctgcatagccctttcccttcatcagagatatataggacgcttccagtgagagaggagattctcaaggccctactgaattctgacctgattggtttccatacgttcgattatgcacggcatttcctatcctgttgtagtcgcatgttgggattagagtatcagtcaaagaggggttacattggacttgaatacttcggacggacagtggggatcaagattatgccagttgggattcacatgaggcagattgaaaatgtgcttcaactagcagataaagagtcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="5923" stop="7091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6223" g_stop="6791" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E283552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6223" e_stop="6791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAG</genome_strand>
        <mrna_strand>CCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366528" ref_strand="+" ref_description="SGN-E366528 [cLPT-13-P6]">
      <seq>tcttttccattatatgcttccctactctgctagtcatggcagtcgatttgatcggtcgtggtgggaggcatatgttgcagcaaacaagatattttcccagaaggttattgaggtgataaatcccgaggatgactatgtctggatccatgattatcatttgatggttttacctacattcttgcgtaggcgtttcaatcggctgcgaatggggttctttctgcatagccctttcccttcatcagagatatataggacgcttccagtgagagaggagattctcaaggccctactgaattctgacctgattggtttccatacgttcgattatgcacggcatttcctatcctgttgtagtcgcatgttgggattagagtatcagtcaaagaggggttacattggacttgaatacttcggacggacagtgggaatcaagattatgccagttgggattcacatgaggcagattgaaaatgtgcttcaactagcagataaagagtcgagagttgcagaacttaagcaacaatttgaaggtaaaactgttttacttggtgttgatgatatggacattttcaaaggtgtcgatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="5991" stop="7178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6291" g_stop="6878" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E366528" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6291" e_stop="6878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAA</genome_strand>
        <mrna_strand>TCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTGATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGAATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366526" ref_strand="+" ref_description="SGN-E366526 [cLPT-13-P2]">
      <seq>tctttttcatttatgtttccctactctgctagtcatggcaggggattttatcggtcgtggtgggaggcccatgttgcagcaaacaagatattttcccagaaggttattgaggtgataaatcccgaggatgactatgtctggatccatgattatcatttgatggttgtacctacattcttgcgtaggcgtttcaatcggctgagaatggggttctttctgcatagccctttcccttcatcagagatatataggacgcttccagtgagagaggagattctcaaggccctactgaattctgacctgattggtttacatacgttcgattatgcacggcatttcctatcctgttgtagtcgcatgttgggattagagtattagtcaaagaggggttacattggacttaaatacttcggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="5991" stop="7006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6291" g_stop="6706" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E366526" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6291" e_stop="6706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGAC</genome_strand>
        <mrna_strand>TCTTTTTCATT-TATGTTTCCCTACTCTGCTAGTCATGGCAGGGGATTTTATCGGTCGTGGTGGGAGGCCCATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTGATGGTTGTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGAGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTACATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATTAGTCAAAGAGGGGTTACATTGGACTTAAATACTTCGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737240" ref_strand="+" ref_description="SGN-E737240 [LC08DH08]">
      <seq>gagagaggagattctcaaggccctactgaattctgacctgattggtttccatacgttcgattatgcacggcatttcctatcctgttgtagtcgcatgttgggattagagtatcagtcaaagaggggttacattggacttgaatacttcggacggacagtggggatcaagattatgccagttgggattcacatgaggcagattgaaaatgtgcttcaactagcagataaagagtcgagagttgcagaacttaagcaacaatttgaaggtaaaactgttttacttggtgttgatgatatggacattttcaaaggtgtcgatttgaaacttctggcattggaggaaatgttaaaacaacatcctaagtggcaaggaagagcagtgctggtccagattgctaatccagctcgagcaaaaggaaaagatattgaggaaatacaagaagaaattcaaacaagcgtcaagagaatcaatgacaagtttagacagcctggttatgaacccatcgtgttcattgatcgcccagtttctcttagtgaacggactgcctattactctgttgctgagtgtgtagttgtaactgcagtaagagatggcatgaaccttacaccatatgaatacgttgtgtgtaggcagggcatccccggttcagagtgcactgcagagtccaatggtctgaaaagcagcatgctggtagtgtctgagttcattggctgttctccttctctaagtggtgctatacgtgtgaacccatggaatgtggaagcaactgcagaagcactgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="6255" stop="7639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6555" g_stop="7339" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E737240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6555" e_stop="7339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAAACTTCTGGCATTGGAGGAAATGTTAAAACAACATCCTAAGTGGCAAGGAAGAGCAGTGCTGGTCCAGATTGCTAATCCAGCTCGAGCAAAAGGAAAAGATATTGAGGAAATACAAGAAGAAATTCAAACAAGCGTCAAGAGAATCAATGACAAGTTTAGACAGCCTGGTTATGAACCCATCGTGTTCATTGATCGCCCAGTTTCTCTTAGTGAACGGACTGCCTATTACTCTGTTGCTGAGTGTGTAGTTGTAACTGCAGTAAGAGATGGCATGAACCTTACACCATATGAATACGTTGTGTGTAGGCAGGGCATCCCCGGTTCAGAGTGCACTGCAGAGTCCAATGGTCTGAAAAGCAGCATGCTGGTAGTGTCTGAGTTCATTGGCTGTTCTCCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATG</genome_strand>
        <mrna_strand>GAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAAACTTCTGGCATTGGAGGAAATGTTAAAACAACATCCTAAGTGGCAAGGAAGAGCAGTGCTGGTCCAGATTGCTAATCCAGCTCGAGCAAAAGGAAAAGATATTGAGGAAATACAAGAAGAAATTCAAACAAGCGTCAAGAGAATCAATGACAAGTTTAGACAGCCTGGTTATGAACCCATCGTGTTCATTGATCGCCCAGTTTCTCTTAGTGAACGGACTGCCTATTACTCTGTTGCTGAGTGTGTAGTTGTAACTGCAGTAAGAGATGGCATGAACCTTACACCATATGAATACGTTGTGTGTAGGCAGGGCATCCCCGGTTCAGAGTGCACTGCAGAGTCCAATGGTCTGAAAAGCAGCATGCTGGTAGTGTCTGAGTTCATTGGCTGTTCTCCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307492" ref_strand="+" ref_description="SGN-E307492 [cLEY-12-N20]">
      <seq>ctcgtgccgcttctctaagtggtgctatacgtgtgaacccatggaatgtggaagcaactgcagaagcactgaatgaggcaatttcaatggctgatggtgagaaggtgttgcgccatgagaagcattacaagtatgtaagcacacatgacgtagcttattggtcaagaagcttcttccaggatctggagagaagttgcagagaccatttcaggcgacgttgctggggtataggcttgagcttcggttttagggttgtagcacttgatcctaattttaaaaagctatccattgacactattgtttctgcttactcaagagccaaaaatcgggcaatattgttggattatgatggcactctcatgcctcaaacagccatcaataaggtccctagtcccgaagttatttcaattattaactcactttgtggggatgaaagaaataccgtgtttcttgtgagtggacgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="6966" stop="8100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7266" g_stop="7800" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E307492" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7266" e_stop="7800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CT-GTTCTCCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTC</genome_strand>
        <mrna_strand>CTCGTGCCGCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206095" ref_strand="+" ref_description="SGN-E206095 [cLEC-29-G15]">
      <seq>agaagcactgaatgaggcaatttcaatggctgatggtgagaaggtgttgcgccatgagaagcattacaagtatgtaagcacacatgacgtagcttattggtcaagaagcttcttccaggatctggagagaagttgcagagaccatttcaggcgacgttgctggggtataggcttgagcttcggttttagggttgtagcacttgatcctaattttaaaaagctatccattgacactattgtttctgcttactcaagagccaaaaatcgggcaatattgttggattatgatggcactctcatgcctcaaacagccatcaataaggtccctagtcccgaagttatttcaattattaactcactttgtggggatgaaagaaataccgtgtttcttgtgagtggacgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtattcttggaacaagcttgttctcatttcgtgcctatttgtcatctcccgtatatcagtatgaacttaattgtctttaattaccaggtggtctgcagataaagaatgggaagtcgtanggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7026" stop="8277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7326" g_stop="7977" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E206095" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7326" e_stop="7977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAG</genome_strand>
        <mrna_strand>AGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTANGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205351" ref_strand="+" ref_description="SGN-E205351 [cLEC-25-D4]">
      <seq>tgcagagaccatttcaggcgacgttgctggggtataggcttgagcttcggttttagggttgtagcacttgatcctaattttaaaaagctatccattgacactattgtttctgcttactcaagagccaaaaatcgggcaatattgttggattatgatggcactctcatgcctcaaacagccatcaataaggtccctagtcccgaagttatttcaattattaactcactttgtggggatgaaagaaataccgtgtttcttgtgagtggacgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7159" stop="8100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7459" g_stop="7800" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E205351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7459" e_stop="7800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTC</genome_strand>
        <mrna_strand>TGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574580" ref_strand="+" ref_description="SGN-E574580 [34070]">
      <seq>tagcacttgatcctaattttaaaaagctatccatcgactctattgtttctgcttactcaagagccaaaaatcgggcaatattgttggattatgatggcactctcatgcctcaaagcagcaatcaataaggtccctagtcccgaagttatttcaattgttaactcactttgtggtgatgaaagaaataccgtgtttctcgtgagtggacgaggaagggatagtttaggccagtggttttctccgtgtgagaagcttggcattgctgcggaacatggatacttcttaaggtggtctgcagataaagaatgggaagtagttgggcagaacaacgattttcagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctcttgtttggcatcatcgagatgcagatcttggttttgggtcttgccaagcaaaagagatgttagaccatcttgagagtgtgcttgcaaatgagcctgttgctgtgaagagtgggcagttcattgttgaagttaagcctcagggagtcagtaaaggtctagttgcagagaaaatttttgcaacaatggctgagagtggccggcaggctgatttcgtgctgtgcgtaggtgatgataggtctgacgaggacctgtttgagattattggaaatgcaataaaatagtggtatactctcttcaggcacgggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7220" stop="9607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7520" g_stop="7805" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8166" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="561" r_length="274" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9141" g_stop="9307" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="730" r_length="169" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E574580" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7520" e_stop="7805"/>
          <exon e_start="7893" e_stop="8166"/>
          <exon e_start="9141" e_stop="9307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAA-CAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAAT-AAATAGTGGTATACTTTCTTCAAGCAC-GGAAGT</genome_strand>
        <mrna_strand>TAGCACTTGATCCTAATTTTAAAAAGCTATCCATCGACTCTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAAGCAGCAATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTGTTAACTCACTTTGTGGTGATGAAAGAAATACCGTGTTTCTCGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAGCTTGGCATTGCTGCGGAACATGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTAGTTGGGCAGAACAACGATTTTCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTCTTGTTTGGCATCATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCAAAAGAGATGTTAGACCATCTTGAGAGTGTGCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTCAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGATTTCGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACCTGTTTGAGATTATTGGAAATGCAATAAAATAGTGGTATACTCTCTTCAGGCACGGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398582" ref_strand="+" ref_description="SGN-E398582 [TUS-43-I6]">
      <seq>ccattaataaggtccctagtcccgaagttatttcaattattaactcactttgtggggatgaaagaaataccgtgtttcttgtgagtggacgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcaaataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7337" stop="8311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7637" g_stop="7805" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8011" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="288" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E398582" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7637" e_stop="7805"/>
          <exon e_start="7893" e_stop="8011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAA</genome_strand>
        <mrna_strand>CCATTAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAAATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205210" ref_strand="+" ref_description="SGN-E205210 [cLEC-16-H8]">
      <seq>catcaataaggtccctagtcccgaagttatttcaattattaactcactttgtggggatgaaagaaataccgtgtttcttgtgagtggacgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcagataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7338" stop="8442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7638" g_stop="7805" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8142" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="418" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E205210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7638" e_stop="7805"/>
          <exon e_start="7893" e_stop="8142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAG</genome_strand>
        <mrna_strand>CATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243535" ref_strand="+" ref_description="SGN-E243535 [cLED-34-P22]">
      <seq>acgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcacataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcagttcattgttgaagttaagcctcacggagttagtaaaggtctagttgcagagaaaatttttgcaacaatggctgagagtggccggcaggctgactttgtgctgtgcgtaggtgatgataggtctgacgaggacatgtttgagattattggaaatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7425" stop="9574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7805" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8166" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="355" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9141" g_stop="9274" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="489" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E243535" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7805"/>
          <exon e_start="7893" e_stop="8166"/>
          <exon e_start="9141" e_stop="9274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAAT</genome_strand>
        <mrna_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCACATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231219" ref_strand="+" ref_description="SGN-E231219 [cLED-5-D1]">
      <seq>acgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcagataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcagttcattgttgaagttaagcctcaaggagttagtaaaggtctagttgcagagaaaatttttgcaacaatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7425" stop="9489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7805" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8166" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="355" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9141" g_stop="9189" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="404" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E231219" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7805"/>
          <exon e_start="7893" e_stop="8166"/>
          <exon e_start="9141" e_stop="9189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTG</genome_strand>
        <mrna_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233308" ref_strand="+" ref_description="SGN-E233308 [cLED-9-A7]">
      <seq>acgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcagataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcagttcattgttgaagttaagcctcagggagttagtaaaggtctagttgcagagaaaatttttgcaacaatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7425" stop="9489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7805" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8166" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="355" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9141" g_stop="9189" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="404" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E233308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7805"/>
          <exon e_start="7893" e_stop="8166"/>
          <exon e_start="9141" e_stop="9189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTG</genome_strand>
        <mrna_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236237" ref_strand="+" ref_description="SGN-E236237 [cLED-20-L21]">
      <seq>acgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcagataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcagttcattgttgaagttaagcctcanggagttagtaaaggtctagttgcagagaaaatttttgcaacaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7425" stop="9487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7805" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8166" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="355" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9141" g_stop="9187" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="402" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E236237" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7805"/>
          <exon e_start="7893" e_stop="8166"/>
          <exon e_start="9141" e_stop="9187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGC</genome_strand>
        <mrna_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAN..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240189" ref_strand="+" ref_description="SGN-E240189 [cLED-25-O7]">
      <seq>acgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcagataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcagttcattgttgaagttaagcctcagggagttagtaaaggtctagttgcagagaaaatttttgcaacaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7425" stop="9487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7805" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8166" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="355" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9141" g_stop="9187" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="402" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E240189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7805"/>
          <exon e_start="7893" e_stop="8166"/>
          <exon e_start="9141" e_stop="9187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGC</genome_strand>
        <mrna_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240584" ref_strand="+" ref_description="SGN-E240584 [cLED-21-M24]">
      <seq>acgaggaagggatagtttaggccagtggttttctccgtgtgagaaacttggtattgctgcggaacacggatacttcttaaggtggtctgcagataaagaatgggaagtcgtagggcagaacaatgatttccagtggatgcagatagctgaacctgttatgaaacagtatacagaagctacagatgggtcttccattgaaacaaaagagagtgctgttgtttggcattatcgagatgcagatcttggttttgggtcttgccaagctaaagagatgttagaccatcttgagagtgttcttgcaaatgagcctgttgctgtgaagagtgggcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7425" stop="8445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7805" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7893" g_stop="8145" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="334" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E240584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7805"/>
          <exon e_start="7893" e_stop="8145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTC</genome_strand>
        <mrna_strand>ACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG.......................................................................................GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433247" ref_strand="+" ref_description="SGN-E433247 [STM-58-O17]">
      <seq>ttgctgtgaagagtgggcagttcattgttgaagttaagcctcagggagtcagtaaaggtctagttgcagagaaaattttcgcaacaatggctgagagtggccggcaggctgatttcgtgctgtgcgtaggtgatgataggtctgacgaggacatgtttgagattattggaaatgcaataaatagtggtatactctcttcaagcatggaagtgtatgcttgcacagtgggacaaaagccaagtaaagccaaatattatcttgatgacacaacagaagttagaaccatgcttcatgctcttgccgaggaatccattcctccttcatcagacattgtaacatgaagctctgtttggagtatatcctttcctgttacttgtccgagtgcacttcacattgactcaaccctttcaagttgtgcaaagaaatatcattagagcttgtactgacatatgacgcataatactctcaaaagatgaatggagacattgtacagaattctttatcagatagtcagtccaagcatcataaagctaaaattagccttctcttcttcgagagaccattgactcatggggttgagatttaactgatcccaaatgtttcaaactgagaagcactgctggccaattggttatacatgtgaagttgacactgaaggggagagcagtgccaaatggtaatcttcatagccttcagaagatatatacgtgctgcccttgttgaatacatacccttattcaagttcttttaagaaggtcactcagtttcttgcctttcatatgacnagatggagcgttgattgtcaaagactcataacttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7823" stop="10255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8123" g_stop="8166" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9141" g_stop="9818" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="707" r_length="663" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9819" i_stop="9897" i_length="79">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9898" g_stop="10016" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="822" r_length="115" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E433247" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8123" e_stop="8166"/>
          <exon e_start="9141" e_stop="9818"/>
          <exon e_start="9898" e_stop="10016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTG-TACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCA</genome_strand>
        <mrna_strand>TTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTCAGTAAAGGTCTAGTTGCAGAGAAAATTTTCGCAACAATGGCTGAGAGTGGCCGGCAGGCTGATTTCGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTCTCTTCAAGCATGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCAAATATTATCTTGATGACACAACAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCT--T-CATCAGACATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTCCTGTTACTTGTCCGAGTGCACTTCACATTGACTCAACCCTTTCAAGTTGTGCAAAG-AAATATCATTAGAGCTTGTACTGA--CAT-ATG---A-CGCA-TAATACTCTCAAAAGAT-GAATG-GAGACATTGTACAGAATTCTTTATCAGATAGTCAGTCCAAGCATCATAAAGCTAAAATTAGCCTTCTCTTCTTCGAGAGACCATTGACTCATGGGGTTGAGATTTAACTGATCCCAAATGTTTCAA-ACTGAGAAGCACTGCT-GGCCAATTGGTTATACATGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCATAGCCTTCAGAAGATATATAC...............................................................................GTGCTGCCCTTGTTGAATACATACCCTTATTCAAGTT-CTTTTAAGAAGG--TCAC-TCAGTTTCTTGCCTTTCATATGACNAGATGGAGCGTTGATTGTCAAAGACTCATAACTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402935" ref_strand="+" ref_description="SGN-E402935 [PPC-9-K9]">
      <seq>ttgctgtgaagagtgggcagttcattgttgaagttaagcctcagggagtcagtaaaggtctagttgcagagaaaattttcgcaacaatggctgagagtggccggcaggctgatttcgtgctgtgcgtaggtgatgataggtctgacgaggacatgtttgagattattggaaatgcaataaatagtggtatactctcttcaagcatggaagtgtatgcttgcacagtgggacaaaagccaagtaaagccaaatattatcttgatgacacaacagaagttagaaccatgcttcatgctcttgccgaggaatccattcctccttcatcagacattgtaacatgaagctctgtttggagtatatcctttcctgttacttgtccgagtgcacttcacattgactcaaccctttcaagttgtgcaaagaaatatcattagagcttgtactgacatatgacgcataatactctcaaaagatgaatggagacattgtacagaattctttatcagatagtcagtccaagcatcataaagctaaaattagccttctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="7823" stop="9959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8123" g_stop="8166" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9141" g_stop="9659" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="550" r_length="506" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E402935" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8123" e_stop="8166"/>
          <exon e_start="9141" e_stop="9659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAGGTGTGCCATCTCTTAATCTTTGCATTTGACTCTTGTTTTTTGGATGAACATTATTCTATTTCACATAATCTCCATTCATCCATTGGACCTGCTCTAATCTCCAGCTATATACTGAGTCGTTGATTTGTCTTCTATCTTGACATGCTTTATAATTCTTTTATGTATGGGTGCTACTATATACTGAGTAGCTGTATTTTCTTATAACACCAGGGAATGATCAGACTGTTTGTGAAGTGTCTTTACTGATTCTAGATTAATGCAGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTG-TACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTC</genome_strand>
        <mrna_strand>TTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTCAGTAAAGGTCTAGTTGCAGAGAAAATTTTCGCAACAATGGCTGAGAGTGGCCGGCAGGCTGATTTCGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTCTCTTCAAGCATGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCAAATATTATCTTGATGACACAACAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCT--T-CATCAGACATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTCCTGTTACTTGTCCGAGTGCACTTCACATTGACTCAACCCTTTCAAGTTGTGCAAAG-AAATATCATTAGAGCTTGTACTGA--CAT-ATG---A-CGCA-TAATACTCTCAAAAGAT-GAATG-GAGACATTGTACAGAATTCTTTATCAGATAGTCAGTCCAAGCATCATAAAGCTAAAATTAGCCTTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207656" ref_strand="+" ref_description="SGN-E207656 [cLEC-32-L7]">
      <seq>agacattaaaagctgcttcaatcaaatatatgcaattttttcaaatctgtcatatttcatggaagtaattaaaggtgatggttgaaatatttttggagtttggtgtttaatctatgaagatttttggtactgtaagccaagatagtgcaactgtcagtttggacgaagtcaaacagatgataatcactcagatggtgcatgttaaaatatcttaatcaattgcaaggagttttagaacagaaaaaagtagacaccttcttgtcctttttggttctgtttgtcatattgaagccatgcatgagattttgccaagttactgttggtttgattcatgaattctgataaattattacaaacaactgcagcaaataactttttattcgttagatctatgcccttgattaaataactaagtacttccagcataatgccaaacaggtagggaatatattactcatttcttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="8127" stop="9192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8427" g_stop="8892" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E207656" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8427" e_stop="8892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATG-CCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATA</genome_strand>
        <mrna_strand>AGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATCTATGCCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379632" ref_strand="+" ref_description="SGN-E379632 [TUS-3-E9]">
      <seq>gacattaaaagctgcttcaatcaaatatatgcaattttttcaaatctgtcatatttcatggaagtaattaaaggtgatggttgaaatatttttggagtttggtgtttaatctatgaagatttttggtactgtaagccaagatagtgcaactgtcagtttggacgaagtcaaacagatgataatcactcagatggtgcatgttaaaatatcttaatcaattgcaaggagttttagaacagaaaaaagtagacaccttcttgtcctttttggttctgtttgtcatattgaagccatgcatgagattttgccaagttactgttggtttgattcatgaattctgataaattattacaaacaactgcagcaaataactttttattcgttagatttatgccttgattaaataactaagtacttccagcataatgccaaacaggtagggaatatattactcatttcttaataacaagaacagaaacaactactttcctgatacatgtacttttcagttctcaacagaatgtgagcgccagaaaattttagttaattatattgttgaataggatggctcgtatgctttcctaaatagtcttcttgttatagctgtattctcttttctacctgttttatctcatacacatccatgtggccttttttgttttcttttgccgcctcgagtttattttaactttattttttgcatcatttccagggagttagtaaaggtctagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="8128" stop="9463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8428" g_stop="9163" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E379632" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8428" e_stop="9163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGC</genome_strand>
        <mrna_strand>GACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTA-TTTTAACTTTATTTTTTGCATCATTTCCAGGGAGTTAGTAAAGGTCTAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376515" ref_strand="+" ref_description="SGN-E376515 [TUS-17-D11]">
      <seq>gacattaaaagctgcttcaatcaaatatatgcaattttttcaaatctgtcatatttcatggaagtaattaaaggtgatggttgaaatatttttggagtttggtgtttaatctatgaagatttttggtactgtaagccaagatagtgcaactgtcagtttggacgaagtcaaacagatgataatcactcagatggtgcatgttaaaatatcttaatcaattgcaaggagttttagaacagaaaaaagtagacaccttcttgtcctttttggttctgtttgtcatattgtagtcatgcatgacattttgcccagttactgctggtttgattcttgaattctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="8128" stop="9070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8428" g_stop="8770" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E376515" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8428" e_stop="8770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATA</genome_strand>
        <mrna_strand>GACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGTAGTCATGCATGACATTTTGCCCAGTTACTGCTGGTTTGATTCTTGAATTCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213200" ref_strand="+" ref_description="SGN-E213200 [cLEC-72-J19]">
      <seq>tgcagagaaaatttttgcaacaatggctgagagtggccggcaggctgactttgtgctgtgcgtaagtgatgataggtctgacgaggacatgtttgagattattggaaatgcaataaatagtggtatactttcttcaagcacggaagtgtatgcttgcacagtgggacaaaagccaagtaaagccacatattatcttgatgacaccgcagaagttagaaccatgcttcatgctcttgccgaggaatccattcctcctcctccatcagaaattgtaacatgaagctctgtttggagtatatccttttctgtacttctctgagtgcacaccacaatgactcaaccctttgaagttgtgcaaagaaaatatcattagagcttggactaacgcatgatgcatatttcattattactctcaaaaaatggaaggagagatattgtacagaattctttgtcagatggtcagtccgagcatcatcaagctaaaattagccttctcttcttcgaaagaaccttaactcctgaggttgagatttaactgatcccaaatgttttaataccgagaagcattgctcggccagctggttatatgtgtgaagttgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="8861" stop="10065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9161" g_stop="9765" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E213200" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9161" e_stop="9765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTG</genome_strand>
        <mrna_strand>TGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAAGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGAGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367149" ref_strand="+" ref_description="SGN-E367149 [cLPT-5-P21]">
      <seq>tgggacaaaagccaagtaaagccacatattatcttgatgacaccgcataagttagaaccatgcttcatgctcttgccgaggaatccattcctcctccttcatcagaaattgtatcatgaagctctgtttggagtacatccttttctgttacttctctgagtgcacaccacaatgactcaaccctttgaagttgtgcaaagaaaatatcattagagcttggactaatgcatgatgcatatttcattattactctcagaaaatggaaggagagatattgtacagaattctttgtcagatggtcagtccgagcatcatcaagctaaaattagccttctcttcttcgaaagacctttaactcctggggttgacatttaactgatcccaaatgttctaataccgagaagcattgctcggccaactggttacatgtgtgaagttgacactgaaggggagagcagtgccaaatggtaatcttcgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="9022" stop="10100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9322" g_stop="9800" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E367149" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9322" e_stop="9800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTG-TACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAG</genome_strand>
        <mrna_strand>TGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCATAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTTCATCAGAAATTGTATCATGAAGCTCTGTTTGGAGTACATCCTTTTCTGTTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAATGCATGATGCATATTTCATTATTACTCTCAGAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGACCTTTAACTCCTGGGGTTGACATTTAACTGATCCCAAATGTTCTAATACCGAGAAGCATTGCTCGGCCAACTGGTTACATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271082" ref_strand="+" ref_description="SGN-E271082 [cLEM-22-G13]">
      <seq>ttgatgacaccgcagaagttagaaccatgcttcatgctcttgccgaggaatccattcctcctcctccatcagaaattgtaacatgaagctctgtttggagtatatccttttctgtacttctctgagtgcacaccacaatgactcaaccctttgaagttgtgcaaagaaaatatcattagagcttggactaacgcatgatgcatatttcattattactctcaaaaaatggaaggagagatattgtacagaattctttgtcagatggtcagtccgagcatcatcaagctaaaattagccttctcttcttcgaaagaaccttaactcctggggttgagatttaactgatcccaaatgttttaataccgagaagcattgctcggccagctggttatatgtgtgaagttgacactgaaggggagagcagtgccaaatggtaatcttcgtagccttcagaaaatatatacgcaagagactcatagaatggcagaggcaaatagagcttttgcacattttcgttaatccatgaacaggatctatacatctgtgctgcccttgttgaatacatactcttattcaagttactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="9055" stop="10241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9355" g_stop="9941" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E271082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9355" e_stop="9941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTA</genome_strand>
        <mrna_strand>TTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379135" ref_strand="+" ref_description="SGN-E379135 [TUS-3-E9](-)">
      <seq>tcagaaattgtaacatgaagctctgtttggagtatatccttttctgtacttctctgagtgcacaccacaatgactcaaccctttgaagttgtgcaaagaaaatatcattagagcttggactaacgcatgatgcatatttcattattactctcaaaaaatggaaggagagatattgtacagaattctttgtcagatggtcagtccgagcatcatcaagctaaaattagccttctcttcttcgaaagaaccttaactcctggggttgagatttaactgatcccaaatgttttaataccgagaagcattgctcggccagctggttatatgtgtgaagttgacactgaaggggagagcagtgccaaatggtaatcttcgtagccttcagaaaatatatacgcaagagactcatagaatggcagaggcaaatagagcttttgcacattttcgttaatccatgaacaggatctatacatctgtgctgcccttgttgaatacatactcttattcaagttacttttacgaaggccacacgtcagtttcttgtcttgcatatgacaagatggagcaacaattgtcaaagactcgtaacctgcattgttagatcaactgtgaacaggtgttttttcttctcttttgcttcatttatttaaggattccttcttttgcatctaggagagaggttattattgttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="9123" stop="10416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9423" g_stop="10116" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E379135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9423" e_stop="10116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCATTGTTAGATCAACTGTGAACAGGTGTTTTTTCTTCTCTTTTGCTTCATTTATTTAAGGATTCCTTCTTTTGCATCTAGGAGTGAGGTTATTATTGTTGTT</genome_strand>
        <mrna_strand>TCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCATTGTTAGATCAACTGTGAACAGGTGTTTTTTCTTCTCTTTTGCTTCATTTATTTAAGGATTCCTTCTTTTGCATCTAGGAGAGAGGTTATTATTGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376514" ref_strand="+" ref_description="SGN-E376514 [TUS-17-D11](-)">
      <seq>cattgctcggccagctggttatatgtgtgaagttgacactgaaggggagagcagtgccaaatggtaatcttcgtagccttcagaaaatatatacgcaagagactcatagaatggcagaggcaaataaagcttttgcacattttcgttaatccatgaacaggatttatacatttgtgctgcccttgttgaatacatacttttattcaagttacttttacgaaggccccacgtcagttttttgttttgcatatgacaaaatggagcaacaattgtcaaagacttgtaacctgcattgttaaatcaactgtgaacaggtgttttttttttttttttgcttcatttatttaaggattcctttttttgcatttaggagtgaggttattattgttgttgggataccccaatttgttggattttcataattgtaaatgctatagaatttttccttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="9425" stop="10473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9725" g_stop="10173" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="484"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E376514" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9725" e_stop="10173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCATTGTTAGATCAACTGTGAACAGGTGTTTTTTCTTCTCTTTTGCTTCATTTATTTAAGGATTCCTTCTTTTGCATCTAGGAGTGAGGTTATTATTGTTGTTGGGATACACCAATTTGTTGGATTCTCATAATTGTAAATGCTATAGAATTTTACCTTC</genome_strand>
        <mrna_strand>CATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAAAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATTTATACATTTGTGCTGCCCTTGTTGAATACATACTTTTATTCAAGTTACTTTTACGAAGGCCCCACGTCAGTTTTTTGTTTTGCATATGACAAAATGGAGCAACAATTGTCAAAGACTTGTAACCTGCATTGTTAAATCAACTGTGAACAGGTGTTTTTTTTTTTTTTTTGCTTCATTTATTTAAGGATTCCTTTTTTTGCATTTAGGAGTGAGGTTATTATTGTTGTTGGGATACCCCAATTTGTTGGATTTTCATAATTGTAAATGCTATAGAATTTTTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242379" ref_strand="+" ref_description="SGN-E242379 [cLEE-3-M16]">
      <seq>acctttatattacaaatattaggaatcaaatgtttgttctgcaaactaccacttgaaagaccaagaataattgatgtcactattaacaatcacctggtttttttttgtcatgttctagcttacgaaatttagtttaggaactctatcacaaggaagaaaagagaaggtaaaattctatagcatttacaattatgagaatccaacaaattggtgtatcccaacaacaataataacctcactcctagatgcaaaagaaggaatccttaaataaatgaagcaaaagagaagaaaaaacacctgttcacagttgatctaacaatgcaggttacgagtctttgacaattgttgctccatcttgtcatatgcaagacaagaaactgacgtgtggccttcgtaaaagtaacttgaataagagtatgtattcaacaagggcagcacagatgtatagatcctgttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="10635" stop="9575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10335" g_stop="9875" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E242379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10335" e_stop="9875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTATATTACAAATATTAGGAATCAAATGTTTGTTCTGCAAACTACCACTTGAAAGACCAAGAATAATTGATGTCACTATTAACAATCACCTGGTTTTTTTTTGTCATGTTCTAGCTTACGAAATTTAGTTTAGGAACTCTATCACAAGGAAGAAAAGAGAAGGTAAAATTCTATAGCATTTACAATTATGAGAATCCAACAAATTGGTGTATCCCAACAACAATAATAACCTCACTCCTAGATGCAAAAGAAGGAATCCTTAAATAAATGAAGCAAAAGAGAAGAAAAAACACCTGTTCACAGTTGATCTAACAATGCAGGTTACGAGTCTTTGACAATTGTTGCTCCATCTTGTCATATGCAAGACAAGAAACTGACGTGTGGCCTTCGTAAAAGTAACTTGAATAAGAGTATGTATTCAACAAGGGCAGCACAGATGTATAGATCCTGTTCATGG</genome_strand>
        <mrna_strand>ACCTTTATATTACAAATATTAGGAATCAAATGTTTGTTCTGCAAACTACCACTTGAAAGACCAAGAATAATTGATGTCACTATTAACAATCACCTGGTTTTTTTTTGTCATGTTCTAGCTTACGAAATTTAGTTTAGGAACTCTATCACAAGGAAGAAAAGAGAAGGTAAAATTCTATAGCATTTACAATTATGAGAATCCAACAAATTGGTGTATCCCAACAACAATAATAACCTCACTCCTAGATGCAAAAGAAGGAATCCTTAAATAAATGAAGCAAAAGAGAAGAAAAAACACCTGTTCACAGTTGATCTAACAATGCAGGTTACGAGTCTTTGACAATTGTTGCTCCATCTTGTCATATGCAAGACAAGAAACTGACGTGTGGCCTTCGTAAAAGTAACTTGAATAAGAGTATGTATTCAACAAGGGCAGCACAGATGTATAGATCCTGTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396426" ref_strand="+" ref_description="SGN-E396426 [TUS-43-I6](-)">
      <seq>aggagtgaggttgttaatgttgttgggatacaccaatttgttggattctcataattgtaaatgctatagaattttaccttctcttttcttccttgtgatagagttcctaaactaaatttcgtaagctagaacatgacaaaaaaaaaccaggtgattgttaatagtgacatcaattattcttggtctttcaagtggtagtttgcagaacaaacatttgattcctaatatttgtaatataaaggtggaagtttatatctagctttgtgagcatcaagctgctttttaattctttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="9793" stop="10690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10093" g_stop="10398" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E396426" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10093" e_stop="10398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGAGGTTATTATTGTTGTTGGGATACACCAATTTGTTGGATTCTCATAATTGTAAATGCTATAGAATTTTACCTTCTCTTTTCTTCCTTGTGATAGAGTTCCTAAACTAAATTTCGTAAGCTAGAACATGACAAAAAAAAACCAGGTGATTGTTAATAGTGACATCAATTATTCTTGGTCTTTCAAGTGGTAGTTTGCAGAACAAACATTTGATTCCTAATATTTGTAATATAAAGGTGGAAGTTTATATCTAGCTTTGTGAGCATCAAGCTGCTTTTTAATTCTTTCTTAAACCAGTCCT</genome_strand>
        <mrna_strand>AGGAGTGAGGTTGTTAATGTTGTTGGGATACACCAATTTGTTGGATTCTCATAATTGTAAATGCTATAGAATTTTACCTTCTCTTTTCTTCCTTGTGATAGAGTTCCTAAACTAAATTTCGTAAGCTAGAACATGACAAAAAAAAACCAGGTGATTGTTAATAGTGACATCAATTATTCTTGGTCTTTCAAGTGGTAGTTTGCAGAACAAACATTTGATTCCTAATATTTGTAATATAAAGGTGGAAGTTTATATCTAGCTTTGTGAGCATCAAGCTGCTTTTTAATTCTTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371704" ref_strand="+" ref_description="SGN-E371704 [TUS-30-A7](-)">
      <seq>cgttcacggtggttcccggttttaaaatcggtcaaacagtattcaaagtcaggtatatttatctccggtcactcctccgtccaagcactaatggaaaatcaagtaaaaaatcacatccccactcgcttaaaaatcacaacgcgcccgcttcaatcacaagtggtagatctcctctctccgcccgcagcatgtacatggttatcaaacttccttcaataaaatgggctcatctaaaaacagaacagatcacggtggcgcgtgaggtgtacgcggtacggattatatgtgttgagaatgtgatgggccttggtccaaaagtattaagtgggcttttgggcccacatagtgaaagtggttcagggctgtgaagtggatgatttggagtatagtgaagaaaagattgggcggtgaagacaaaaggcaaagtaggctcagtcaggtagtgggcccaataaggcatacgtctttgttttctttggtatatcacaaaagtagaaagagggaccctttatctctgaattaaaaaaaaagaagaagaaactaaaaatgttgtttattcctcaaattgtacgttaaagaatgacagacaatatgcctgcaacttgcatatcagattatataatgtgtataaacaattagctaaactattacttagtatatacatagtatatataatgaatattagcattgtgcatggtatctttgctttgaattttggatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="13543" stop="12223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13243" g_stop="12522" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E371704" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13243" e_stop="12522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCACGGTGGTTCCCGGTTTTAAAATCGGTCAAACAGTAGTCCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGGAAATCAAGTAAAAAATCACATCCCCACTCGCTT-AAAATCACCACGCG-CCGCCTCAATCAC-AGTGGTAGATCTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATGGTATCTTTGCTTTGAATTTTGGATCTAG</genome_strand>
        <mrna_strand>CGTTCACGGTGGTTCCCGGTTTTAAAATCGGTCAAACAGTA-TTCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGAAAATCAAGTAAAAAATCACATCCCCACTCGCTTAAAAATCACAACGCGCCCGCTTCAATCACAAGTGGTAGATCTCCTCTCTCCGCCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATGGTATCTTTGCTTTGAATTTTGGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371946" ref_strand="+" ref_description="SGN-E371946 [TUS-30-A8](-)">
      <seq>acggtggttcccggttataaaatcggtcaaacagtagtccaaagtcaggtatatttatctccggtcactcctccgtccaagcactaatgggaaatcaagtaaaaaatcacatccccactcgcttaaaatcaccacgcgccgcctcaatcacagtggtagatctcctctctccggccgcagcatgtacatggttatcaaacttccttcaataaaatgggctcatctaaaaacagaacagatcacggtggcgcgtgaggtgtacgcggtacggattatatgtgttgagaatgtgatgggccttggtccaaaagtattaagtgggcttttgggcccacatagtgaaagtggttcagggctgtgaagtggatgatttggagtatagtgaagaaaagattgggcggtgaagacaaaaggcaaagtaggctcagtcaggtagtgggcccaataaggcatacgtctttgttttctttggtatatcacaaaagtagaaagagggaccctttatctctgaattaaaaaaaaagaagaagaaactaaaaatgttgtttattcctcaaattgtacgttaaagaatgacagacaatatgcctgcaacttgcatatcagattatataatgtgtataaacaattagctaaactattacttagtatatacatagtatatataatgaatattagcattgtgcatggtatctttgctttgaattttggatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="13538" stop="12223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13238" g_stop="12522" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E371946" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13238" e_stop="12522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTGGTTCCCGGTTTTAAAATCGGTCAAACAGTAGTCCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGGAAATCAAGTAAAAAATCACATCCCCACTCGCTTAAAATCACCACGCGCCGCCTCAATCACAGTGGTAGATCTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATGGTATCTTTGCTTTGAATTTTGGATCTAG</genome_strand>
        <mrna_strand>ACGGTGGTTCCCGGTTATAAAATCGGTCAAACAGTAGTCCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGGAAATCAAGTAAAAAATCACATCCCCACTCGCTTAAAATCACCACGCGCCGCCTCAATCACAGTGGTAGATCTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATGGTATCTTTGCTTTGAATTTTGGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734544" ref_strand="+" ref_description="SGN-E734544 [LB12DG10]">
      <seq>ctcctctctccggccgcagcatgtacatggttatcaaacttccttcaataaaatgggctcatctaaaaacagaacagatcacggtggcgcgtgaggtgtacgcggtacggattatatgtgttgagaatgtgatgggccttggtccaaaagtattaagtgggcttttgggcccacatagtgaaagtggttcagggctgtgaagtggatgatttggagtatagtgaagaaaagattgggcggtgaagacaaaaggcaaagtaggctcagtcaggtagtgggcccaataaggcatacgtctttgttttctttggtatatcacaaaagtagaaagagggaccctttatctctgaattaaaaaaaaagaagaagaaactaaaaatgttgtttattcctcaaattgtacgttaaagaatgacagacaatatgcctgcaacttgcatatcagattatataatgtgtataaacaattagctaaactattacttagtatatacatagtatatataatgaatattagcattgtgcnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="13377" stop="12253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13077" g_stop="12550" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="543"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E734544" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13077" e_stop="12550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATG</genome_strand>
        <mrna_strand>CTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734201" ref_strand="+" ref_description="SGN-E734201 [LB12AB12]">
      <seq>ctcctctctccggccgcagcatgtacatggttatcaaacttccttcaataaaatgggctcatctaaaaacagaacagatcacggtggcgcgtgaggtgtacgcggtacggattatatgtgttgagaatgtgatgggccttggtccaaaagtattaagtgggcttttgggcccacatagtgaaagtggttcagggctgtgaagtggatgatttggagtatagtgaagaaaagattgggcggtgaagacaaaaggcaaagtaggctcagtcaggtagtgggcccaataaggcatacgtctttgttttctttggtatatcacaaaagtagaaagagggaccctttatctctgaattaaaaaaaaagaagaagaaactaaaaatgttgtttattcctcaaattgtacgttaaagaatgacagacaatatgcctgcaacttgcatatcagattatataatgtgtataaacaattagctaaactattacttagtatatacatagtatatataatgaatattagcattgtgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="13377" stop="12252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13077" g_stop="12550" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="543"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E734201" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13077" e_stop="12550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATG</genome_strand>
        <mrna_strand>CTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343113" ref_strand="+" ref_description="SGN-E343113 [cTOF-17-A20]">
      <seq>ttcttctctgtttgggaaattcttgaaagccaaataccttcatttagttcatcccaaaatggagttttccttttccgggaacttaaaccagaggaaacttgtgaactccggcgagttcccggaaacagagttcttcaaagttttcagcgagatgggtcggcgcgtgtggcttttacattgcttagcattctctttcgatcaacaagttagcatttttcaagttcggaaaaactccagattctcagaggtctacatggaaagcatcacagacgagattttctccttcgccggcggcgaattcaaggtggcgttcacggtggttcccggttttaaaatcggtcaaacagtagtccaaagtcaggtatatttatctccggtcactcctccgtccaagcactaatgggaaatcaagtaaaaaatcacatccccactcgcttaaaatcaccacgcgccgcctcaatcacagtggtagatctcctctctccggccgcagcatgtacatggttatcaaacttccttcaataaaatgggctcatctaaaaacagaacagatcacggtggcgcgtgaggtgtacgcggtacggattatatgtgttgagaatgtgatgggccttggtccaaaagtattaagtgggcttttgggcccacatagtgaaagtggttcaggggctgtgaagtggatgatttggagtatagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="13851" stop="12554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13551" g_stop="12854" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E343113" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13551" e_stop="12854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTGTTTGGGAAATTCTTGAAAGCCAAATACCTTCATTTAGTTCATCCCAAAATGGAGTTTTCCTTTTCCGGGAACTTAAACCAGAGGAAACTTGTGAACTCCGGCGAGTTCCCGGAAACAGAGTTCTTCAAAGTTTTCAGCGAGATGGGTCGGCGCGTGTGGCTTTTACATTGCTTAGCATTCTCTTTCGATCAACAAGTTAGCATTTTTCAAGTTCGGAAAAACTCCAGATTCTCAGAGGTCTACATGGAAAGCATCACAGACGAGATTTTCTCCTTCGCCGGCGGCGAATTCAAGGTGGCGTTCACGGTGGTTCCCGGTTTTAAAATCGGTCAAACAGTAGTCCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGGAAATCAAGTAAAAAATCACATCCCCACTCGCTTAAAATCACCACGCGCCGCCTCAATCACAGTGGTAGATCTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCA-GGGCTGTGAAGTGGATGATTTGGAGTATAGTGA</genome_strand>
        <mrna_strand>TTCTTCTCTGTTTGGGAAATTCTTGAAAGCCAAATACCTTCATTTAGTTCATCCCAAAATGGAGTTTTCCTTTTCCGGGAACTTAAACCAGAGGAAACTTGTGAACTCCGGCGAGTTCCCGGAAACAGAGTTCTTCAAAGTTTTCAGCGAGATGGGTCGGCGCGTGTGGCTTTTACATTGCTTAGCATTCTCTTTCGATCAACAAGTTAGCATTTTTCAAGTTCGGAAAAACTCCAGATTCTCAGAGGTCTACATGGAAAGCATCACAGACGAGATTTTCTCCTTCGCCGGCGGCGAATTCAAGGTGGCGTTCACGGTGGTTCCCGGTTTTAAAATCGGTCAAACAGTAGTCCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGGAAATCAAGTAAAAAATCACATCCCCACTCGCTTAAAATCACCACGCGCCGCCTCAATCACAGTGGTAGATCTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGGCTGTGAAGTGGATGATTTGGAGTATAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314645" ref_strand="+" ref_description="SGN-E314645 [cTOA-20-B2]">
      <seq>cttatgatagtgaagctattcaagttgcagatcaagctgtggtggatgaactcaaagctttgtctgagcttaaacatagttatatcaaaaaacaaattgattcttcaccaccccatgtaactttaatgcttgctgagattcaagaacagcaatctgtcatgaaaacttatgaaatcaccatgaagaaaatgcagggagaaattgaatctaaagggtacaacatatcttctctacaaaaggagctacaagaaaccattcacaacaatagatcactcgaaagaaagctcaacgccagtggatcattctccattcttgacaatgtcaaattttcagatgtaaatcctaaagatttcatcatggttttacactacgccatgagatctatccgaaattttgtcaagttcttgattcgggaaatggagtctgcaaattgggatattgatgctgctacgaaatctattcaaaatggtgtcactttccacaagagtaatcatanggcttttgcgtttgagtcttttgtttgcagagagatttcagtgggtttatgagccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="14527" stop="13372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14227" g_stop="13672" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E314645" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14227" e_stop="13672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAAATCACCATGAAGAAAATGCAGGGAGAAATTGAATCTAAAGGGTACAACATATCTTCTCTACAAAAGGAGCTACAAGAAACCATTCACAACAATAGATCACTCGAAAGAAAGCTCAACGCCAGTGGATCATTCTCCATTCTTGACAATGTCAAATTTTCAGATGTAAATCCTAAAGATTTCATCATGGTTTTACACTACGCCATGAGATCTATCCGAAATTTTGTCAAGTTCTTGATTCGGGAAATGGAGTCTGCAAATTGGGATATTGATGCTGCTACGAAATCTATTCAAAATGGTGTCACTTTCCACAAGAGTAATCATAGGGCTTTTGCGTTTGAGTCTTTTGTTTGCAGAGAGATTTTCAGTGGGTTTAATGAGCCAAC</genome_strand>
        <mrna_strand>CTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAAATCACCATGAAGAAAATGCAGGGAGAAATTGAATCTAAAGGGTACAACATATCTTCTCTACAAAAGGAGCTACAAGAAACCATTCACAACAATAGATCACTCGAAAGAAAGCTCAACGCCAGTGGATCATTCTCCATTCTTGACAATGTCAAATTTTCAGATGTAAATCCTAAAGATTTCATCATGGTTTTACACTACGCCATGAGATCTATCCGAAATTTTGTCAAGTTCTTGATTCGGGAAATGGAGTCTGCAAATTGGGATATTGATGCTGCTACGAAATCTATTCAAAATGGTGTCACTTTCCACAAGAGTAATCATANGGCTTTTGCGTTTGAGTCTTTTGTTTGCAGAGAGA-TTTCAGTGGGTTT-ATGAGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371947" ref_strand="+" ref_description="SGN-E371947 [TUS-30-A8]">
      <seq>tctgtccatttttttctctctttttttccactttctcagcacacccttttgctttctaccttcagttcacacttgtcaagactccatatttttcatgtcctaaaaatcactgattttgcttgcctactctgttttactctgtttcagcaatatcaaaatggaatctgtgagaccagctccggctcctagtaaaagcaggttagctaagacatttcagagagtaatccatcggaaaaactcttcaaaaccattttccaataatgggttttgcctactcatacctcaagaaaagcttaggtgctgtgagtcgcagcactttgataaagaagaaattgaagagtgtaaagaacataccaaaaacagagcggttatggaggcttttgttgctaagctttttgctacaatttcttctgttaaagctgcgtatgctgagcttcagctggctcagttcccttatgatagtgaagctattcaagttgcagatcaagctgtggtggatgaactcaaagctttgtctgagcttaaacatagttatatcaaaaaacaaattgattcttcaccaccccatgtaactttaatgcttgctgagattcaagaacagcaatctgtcatgaaaacttatgagatcaccatgaagagaatgcagggagaaattgaatctaaagggtacaacatatcttctctacaaaaggagctacaagaaaccattcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="14979" stop="13666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14679" g_stop="13966" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E371947" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14679" e_stop="13966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAAATCACCATGAAGAAAATGCAGGGAGAAATTGAATCTAAAGGGTACAACATATCTTCTCTACAAAAGGAGCTACAAGAAACCATTCACAA</genome_strand>
        <mrna_strand>TCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAGATCACCATGAAGAGAATGCAGGGAGAAATTGAATCTAAAGGGTACAACATATCTTCTCTACAAAAGGAGCTACAAGAAACCATTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371705" ref_strand="+" ref_description="SGN-E371705 [TUS-30-A7]">
      <seq>tctgtccatttttttctctctttttttccactttctcagcacacccttttgctttctaccttcagttcacacttgtcaagactccatatttttcatgtcctaaaaatcactgattttgcttgcctactctgttttactctgtttcagcaatatcaaaatggaatctgtgagaccagctccggctcctagtaaaagcaggttagctaagacatttcagagagtaatccatcggaaaaactcttcaaaaccattttccaataatgggttttgcctactcatacctcaagaaaagcttaggtgctgtgagtcgcagcactttgataaagaagaaattgaagagtgtaaagaacataccaaaaacagagcggttatggaggcttttgttgctaagctttttgctacaatttcttctgttaaagctgcgtatgctgagcttcagctggctcagttcccttatgatagtgaagctattcaagttgcagatcaagctgtggtggatgaactcaaagctttgtctgagcttaaacatagttatatcaaaaaacaaattgattcttcaccaccccatgtaactttaatgcttgctgagattcaagaacagcaatctgtcatgaaaacttatgaaatcaccatgaagaaaatgcagggagagattgaatctaaagggtacaacatatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="14979" stop="13699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14679" g_stop="13999" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E371705" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14679" e_stop="13999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAAATCACCATGAAGAAAATGCAGGGAGAAATTGAATCTAAAGGGTACAACATATCTTC</genome_strand>
        <mrna_strand>TCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAAATCACCATGAAGAAAATGCAGGGAGAGATTGAATCTAAAGGGTACAACATATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316333" ref_strand="+" ref_description="SGN-E316333 [cTOA-25-K17]">
      <seq>ttggcttttactacccaacttccatttttttccttttatcttcaaccttgaatcaaacaagagggactctgcttttccctccttttcttctctgtccatttttttctctcttttttttccactttctcagcacacccttttgctttctaccttcagttcacacttgtcaagactccatatttttcatgtcctaaaaatcactgattttgcttgcctactctgttttactctgtttcagcaatatcaaaatggaatctgtgagaccagctccggctcctagtaaaagcaggttagctaagacatttcagagagtaatccatcggaaaaactcttcaaaaccattttccaataatgggttttgcctactcatacctcaagaaaagcttaggtgctgtgagtcgcagcactttgataaagaagaaattgaagagtgtaaagaacataccaaaaacagagcggttatggaggcttttgttgctaagctttttgctacaatttcttctgttaaagctgcgtatgctgagcttcagctggctcagttcccttatgatagtgaagctattcaagttgcagatcaagctgtggtggatgaactcaaagctttgtctgagcttaaacatagttatatcaaaaaacaaattgattcttcaccaccccatgtaactttaatgcttgctgagatttcagaacagcaatctgtcatgaaaactttatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="15069" stop="13755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14769" g_stop="14054" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E316333" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14769" e_stop="14054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTTTACTACCCAACTTCCATTTTTTTCCTTTTATCTTCAACCTTGAATCAAACAAGAGGGACTCTGCTTTTCCCTCCTTTTCTTCTCTGTCCATTTTTTTCTCTC-TTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAAC-TTATGAAA</genome_strand>
        <mrna_strand>TTGGCTTTTACTACCCAACTTCCATTTTTTTCCTTTTATCTTCAACCTTGAATCAAACAAGAGGGACTCTGCTTTTCCCTCCTTTTCTTCTCTGTCCATTTTTTTCTCTCTTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTTCAGAACAGCAATCTGTCATGAAAACTTTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282901" ref_strand="+" ref_description="SGN-E282901 [cLER-15-H10]">
      <seq>tctgtccatttttttctctctttttttccactttctcagcacacccttttgctttctaccttcagttcacacttgtcaagactccatatttttcatgtcctaaaaatcactgattttgcttgcctactctgttttactctgtttcagcaatatcaaaatggaatctgtgagaccagctccggctcctagtaaaagcaggttagctaagacatttcagagagtaatccatcggaaaaactcttcaaaaccattttccaataatgggttttgcctactcatacctcaagaaaagcttaggtgctgtgagtcgcagcactttgataaagaagaaattgaagagtgtaaagaacataccaaaaacagagcggttatggaggcttttgttgctaagctttttgctacaatttcttctgttaaagctgcgtatgctgagcttcagctggctcagttcccttatgatagtgaagctattcaagttgcagatcaagctgtggtggatgaactcaaagctttgtctgagcttaaacatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="14979" stop="13848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14679" g_stop="14148" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E282901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14679" e_stop="14148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGT</genome_strand>
        <mrna_strand>TCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711758" ref_strand="+" ref_description="SGN-E711758 [FB02DE12]">
      <seq>cgctggacatcgtgattccaacctgcagaaggaactaaatcgctacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttacagaaattctcaaaggatattttacatgatacaagcatcgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29677" stop="28620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29379" g_stop="28916" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E711758" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29379" e_stop="28916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAACAAGCTT</genome_strand>
        <mrna_strand>CGCTGGACATCGTGATTCCAACCTGCAGAAGGAACTAAATCGCTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541263" ref_strand="+" ref_description="SGN-E541263 [TUS-61-P12](-)">
      <seq>catcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatggtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccccaagtttttcctgttaaattttgaaagtttttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttacagaaattctcaaaggatattttacatgatacaagcatcgggcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30610" stop="28620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30447" g_stop="30441" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="143" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29396" g_stop="28920" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="620" r_length="477" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="653"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E541263" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30447" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAACAA</genome_strand>
        <mrna_strand>CATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATGGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCCCAAGTTTTTCCTGTTAAATTTTGAAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGGGCCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232601" ref_strand="+" ref_description="SGN-E232601 [cLEL-5-J14](-)">
      <seq>tcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttacagaaattctcaaaggatattttacatgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29673" stop="28637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29373" g_stop="28922" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E232601" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29373" e_stop="28922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAAC</genome_strand>
        <mrna_strand>TCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232245" ref_strand="+" ref_description="SGN-E232245 [cLEL-5-J14](-)">
      <seq>tgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaacaaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttacagaaattctcaaaggatattttacatgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29569" stop="28637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29269" g_stop="28922" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E232245" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29269" e_stop="28922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAAC</genome_strand>
        <mrna_strand>TGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACAAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347587" ref_strand="-" ref_description="SGN-E347587 [cTOF-26-M8]">
      <seq>ccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttacagaaattctcaaaggatattttacatgataaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30610" stop="28637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30448" g_stop="30441" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="144" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29396" g_stop="28937" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="604" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="621"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E347587" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30448" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAA</genome_strand>
        <mrna_strand>CCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409964" ref_strand="+" ref_description="SGN-E409964 [PPI-15-J21]">
      <seq>cttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagatatggtgtcacatccgttccacgcacttttctatatagtgttcatgttatcagcttgtgccctgttctcaaagacctggattgaagtttctggatcatctgccagagatgttgccaagcagcttaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaattaaatcgttacatacctactgcagctgccttcggaggagtttgcattggtgcattgacagttttggcagatttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacgagtttttcttgttaaattttgtaagtttttttctttttaactgtgctgatgagcgtctgaatgttttacnagacaagactaggttaatttacagaaattctcaaaggatgttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31005" stop="28650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30705" g_stop="30676" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="291" r_length="136" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="28944" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="741" r_length="450" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E409964" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30705" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACAT</genome_strand>
        <mrna_strand>CTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGATATGGTGTCACATCCGTTCCACGCACTTTTCTATATAGTGTTCATGTTATCAGCTTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAGAGATGTTGCCAAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAATTAAATCGTTACATACCTACTGCAGCTGCCTTCGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGATTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACGAGTTTTTCTTGTTAAATTTTGTAAG----TTTTTTTCTTTTTAACTGTGCTGATGAGCGTCTGAATGTTTTACNAGACAAGACTAGGTTAATTTACAGAAATTCTCAAAGG--ATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457576" ref_strand="+" ref_description="SGN-E457576 [cPRO-3-I11]">
      <seq>caggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacatttgagaaggagaaggccactgaactaggcatgtttggtttgtaggttgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttgtttttaactgtgctgatgagcgcctgaatgttttacaagacaagactaggttaatttacagaaattctcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29554" stop="28652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29254" g_stop="28948" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E457576" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29254" e_stop="28948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTT</genome_strand>
        <mrna_strand>CAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTTGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGTTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAG----TTTTTTTGTTTTTAACTGTGCTGATGAGCGCCTGAATGTTTTACAAGACAAGACTAGGTTAATTTACAGAAATTCTCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593524" ref_strand="-" ref_description="SGN-E593524 [36756]">
      <seq>tgcattggtgcattgacagttttggcagatttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacgagtttttcttgttaaattttgtaagtttttttctttttaactgtgctgatgagcgtctgaatgttttacaagacaagactaggttaatttacagaaattctcaaaggatgttacttgaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29603" stop="28650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29303" g_stop="28953" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="378"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E593524" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593524" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29303" e_stop="28953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGAT</genome_strand>
        <mrna_strand>TGCATTGGTGCATTGACAGTTTTGGCAGATTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACGAGTTTTTCTTGTTAAATTTTGTAAG----TTTTTTTCTTTTTAACTGTGCTGATGAGCGTCTGAATGTTTTACAAGACAAGACTAGGTTAATTTACAGAAATTCTCAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404503" ref_strand="+" ref_description="SGN-E404503 [PPC-14-A18]">
      <seq>agctttggaagagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaagaactggaatccttcttgcagtcacaatcatttaccagtattttgagacatttgagaaagagaaagccactgaactaggcatgtttggtttgtaggttgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttgtttttaactgtgctgatgagcgcctgaatgttttacaagacaagactaggttaatttacagaaattctcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29616" stop="28657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29318" g_stop="28956" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E404503" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29318" e_stop="28956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAG</genome_strand>
        <mrna_strand>AGCTTTGGAAGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAAGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTTGAGAAAGAGAAAGCCACTGAACTAGGCATGTTTGGTTTGTAGGTTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAG----TTTTTTTGTTTTTAACTGTGCTGATGAGCGCCTGAATGTTTTACAAGACAAGACTAGGTTAATTTACAGAAATTCTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608911" ref_strand="-" ref_description="SGN-E608911 [24908]">
      <seq>ctttggaggagtttgcattggtgcattgacagttttggcagatttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacaagtttttcttgttaaattttgtaagtttttttgtttttaactgtgctgatgagcgcctgaatgttttacaagacaagactaggttaatttacagaaattctcaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29616" stop="28652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29316" g_stop="28957" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="382"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E608911" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608911" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29316" e_stop="28957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAA</genome_strand>
        <mrna_strand>CTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGATTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCTTGTTAAATTTTGTAAG----TTTTTTTGTTTTTAACTGTGCTGATGAGCGCCTGAATGTTTTACAAGACAAGACTAGGTTAATTTACAGAAATTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605729" ref_strand="+" ref_description="SGN-E605729 [21656]">
      <seq>gacagttttggcagacttgatgggagcgattggatcaggaatctggaatccttcttgcagtcacaatcatttaccagtattttgagtcatttgagaaggagaaggccactgaactaggcatgtttggtttgtaggttgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttgtttttaactgtgctgatgagcgcctgaatgttttacaagacaagactaggttaatttacagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29589" stop="28665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="28958" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E605729" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="28958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAA-CTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAA</genome_strand>
        <mrna_strand>GACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAATCTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGTCATTTGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGTTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAG----TTTTTTTGTTTTTAACTGTGCTGATGAGCGCCTGAATGTTTTACAAGACAAGACTAGGTTAATTTACAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597339" ref_strand="+" ref_description="SGN-E597339 [40840]">
      <seq>ggccactgaactaggcatgtttggtttgtaggttgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttgtttttaactgtgctgatgagcgcctgaatgttttacaagacaagactaggttaatttacagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29487" stop="28665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29187" g_stop="28958" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E597339" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29187" e_stop="28958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAA</genome_strand>
        <mrna_strand>GGCCACTGAACTAGGCATGTTTGGTTTGTAGGTTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAG----TTTTTTTGTTTTTAACTGTGCTGATGAGCGCCTGAATGTTTTACAAGACAAGACTAGGTTAATTTACAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424054" ref_strand="+" ref_description="SGN-E424054 [STM-42-P18]">
      <seq>aatttctgtatttaacctagtcttgtcttgtaaaacattcaggcgctcatcagcacagttaaaaacaaaaaaacttacaaaatttaacaggaaaaacttgtggcctctaatatctatccattataagccaacaagttaactacattgctctcttggcttgaaggagggacaaactagcatgaacgctacaacctacaaaccaaacatgcctagttcagtggccttctccttctcaaatgtctcaaaatactggtaaatgattgtgactgcaagaaggattccagttcctgatccaatcgctcccatcaagtctgccaaaactgtcaatgcaccaatgcaaactcctccaaaggcagctgcagtaggtatgtaacgatttaattccttctgcaggttggaatcacgatgaccaggcatcaccatttgttgctccttaagctgcttggcaacatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="28663" stop="29698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28963" g_stop="29398" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E424054" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28963" e_stop="29398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTGTAAATTAACCTAGTCTTTTCATGTAAAACATTCGGGCGCTCATCAGCACAGTTAAAAACAAAAAAAAAAACTTACAAAATTTAACAGGAAAAACTTGTGGCCTCTAATATCTATCCATTATAAGCCAACAAGTTCACTACATTGCTCTCTTGGCTT---GGAGGGACATTCTAGCATAAACGCTACAGCCTACAAACCAAACATGCCTAGTTCAGTGGCCTTCTCCTTCTCGAATGTCTCAAAATACTGGTAAATGATTGTGACTGCAAGAAGGATTCCAGTTCCTGATCCAATCGCTCCCATCAAGTCTGCCAAAACTGTCAATGCACCAATGCAAACTCCTCCAAAGGCAGCTGCAGTAGGTATGTAACGATTTAGTTCCTTCTGCAGGTTGGAATCACGATGACCAGGCATCACCATTTGTTGCTCCT</genome_strand>
        <mrna_strand>AATTTCTGT-ATTTAACCTAGTCTTGTCTTGTAAAACATTCAGGCGCTCATCAGCACAGTTAAAAAC----AAAAAAACTTACAAAATTTAACAGGAAAAACTTGTGGCCTCTAATATCTATCCATTATAAGCCAACAAGTTAACTACATTGCTCTCTTGGCTTGAAGGAGGGACAAACTAGCATGAACGCTACAACCTACAAACCAAACATGCCTAGTTCAGTGGCCTTCTCCTTCTCAAATGTCTCAAAATACTGGTAAATGATTGTGACTGCAAGAAGGATTCCAGTTCCTGATCCAATCGCTCCCATCAAGTCTGCCAAAACTGTCAATGCACCAATGCAAACTCCTCCAAAGGCAGCTGCAGTAGGTATGTAACGATTTAATTCCTTCTGCAGGTTGGAATCACGATGACCAGGCATCACCATTTGTTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546226" ref_strand="+" ref_description="SGN-E546226 [TUS-69-H18](-)">
      <seq>aaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccattccatgctctgttctatatagtgttcatgttatcagcttgcgccctgttctcaaagacctggattgaagtttctggatcatctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcggacctgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaacgtccctccaagccaagagagcaatgtagttaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtctttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttacagaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30811" stop="28665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30511" g_stop="30441" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="207" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29396" g_stop="28966" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="638" r_length="431" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="656"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E546226" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30511" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAA</genome_strand>
        <mrna_strand>AAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCATTCCATGCTCTGTTCTATATAGTGTTCATGTTATCAGCTTGCGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCGGACCTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAACGTCCCTCCAAGCCAAGAGAGCAATGTAGTTAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTCTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591536" ref_strand="+" ref_description="SGN-E591536 [45251]">
      <seq>gttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcgcttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagacatggtgtcacatccgttccacgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcatctgccagagatgttgccaagcagcttaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaattaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacatttgagaaggagaaggccactgaactaggcatgtttggtttgtaggttgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaactttgttggcttataatggatagatattacaggccacaagtttttcctgtttaaactcctgtaacgtcccgcgttttaacctgtgctgatgagcgctgaatgttttacaagacagactagttatttacgaaatctcgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31095" stop="28706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30795" g_stop="30676" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="245" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="381" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="28980" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="798" r_length="417" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E591536" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30795" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAAC-TTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAG</genome_strand>
        <mrna_strand>GTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCGCTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGACATGGTGTCACATCCGTTCCACGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAGAGATGTTGCCAAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAATTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTTGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGTTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAACTTTGTTGGCTTATAATGGATAGATATTACAGGCCACAAGTTTTTCCTGTTTAAACTCCT--GTAACGTCCCGCGTTTTAACCTGTGCTGATGAGCG-CTGAATGTTTTACAAG-ACAGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377583" ref_strand="+" ref_description="SGN-E377583 [TUS-20-N3](-)">
      <seq>agtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttttggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagttttttttttgtttttaactgtgctgatgagcgcccgaatgttttacatgaaaagactaggttaatttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31013" stop="28665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30713" g_stop="30676" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="163" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="299" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="28980" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="715" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="743"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E377583" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30713" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAG</genome_strand>
        <mrna_strand>AGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTTTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAG-TTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718192" ref_strand="+" ref_description="SGN-E718192 [FC03DH06]">
      <seq>cgattggcggccaatcggccgaattattctggaaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctgttaaattttgtaagtttttttttttgtttttaactgtgctgatgaccgcccaaatgttttacatgaaaagactaggttaatttaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30804" stop="28665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30499" g_stop="30441" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="82" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="218" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29396" g_stop="28980" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="635" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="675"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E718192" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30499" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="28980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAG</genome_strand>
        <mrna_strand>TATTCTGGA-AATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGACCGCCCAAATGTTTTACATGAAAAGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211244" ref_strand="+" ref_description="SGN-E211244 [cLEC-70-H18]">
      <seq>tagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggcttataatggatagatattagaggccacaagtttttcctggtaaaatttgtaagtttttttttttgttttaactgtgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31093" stop="28713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30793" g_stop="30676" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="243" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="379" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29013" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="762" r_length="383" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E211244" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30793" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGA</genome_strand>
        <mrna_strand>TAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGGTAAAATTTGTAAGTTTTTTTTTTTG-TTTTAACTGTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315893" ref_strand="+" ref_description="SGN-E315893 [cTOA-26-K20]">
      <seq>tcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactangcatgtttggtttgtaggctgtagcgtttatgctagaatgtccctccaagccaagagagcaatgtagtgaacttgttggctttatatggatagatattagaggccacnagttttttcctgtttaaatttgtaagttttttttttttggtttttaactgggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30999" stop="28713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30699" g_stop="30676" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="149" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="285" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29013" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="672" r_length="387" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E315893" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30699" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAG-TTTTTCCTGTTAAATTTTGTAAG-TTTTTTTTTTT-GTTTTTAACTGTGCTGA</genome_strand>
        <mrna_strand>TCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTANGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTTATATGGATAGATATTAGAGGCCACNAGTTTTTTCCTGTTTAAATTTGTAAGTTTTTTTTTTTTGGTTTTTAACTGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611652" ref_strand="+" ref_description="SGN-E611652 [61406]">
      <seq>ttggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgagaaggagaaggccactgaactaggcatgtttggtttgtaggctgtagcgttcatgctagtttgtccctccttcaagccaagagagcaatgtagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="29560" stop="28802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29260" g_stop="29102" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E611652" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29260" e_stop="29102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCT-C--CAAGCCAAGAGAGCAATGTAGTGAAC</genome_strand>
        <mrna_strand>TTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTCATGCTAGTTTGTCCCTCCTTCAAGCCAAGAGAGCAATGTAGTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271371" ref_strand="+" ref_description="SGN-E271371 [cLEM-5-M5]">
      <seq>tctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgagacattcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30871" stop="28896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30683" g_stop="30676" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="133" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="269" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29196" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="470" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E271371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30683" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAG</genome_strand>
        <mrna_strand>TCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452192" ref_strand="+" ref_description="SGN-E452192 [cSTS-15-P6]">
      <seq>gaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcacttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagacatggtgtcacatccgttccacgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcatctgctagagatgttgccaagcagcttaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaattaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31200" stop="28905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30900" g_stop="30676" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="350" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="486" r_length="136" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29205" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="678" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E452192" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30900" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAG</genome_strand>
        <mrna_strand>GAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCACTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGACATGGTGTCACATCCGTTCCACGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCTAGAGATGTTGCCAAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAATTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259418" ref_strand="+" ref_description="SGN-E259418 [cLEG-43-L4]">
      <seq>cgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcangaactggaatccttcttgcagtcacaatcatttaccagtattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31132" stop="28905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30832" g_stop="30676" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="418" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29205" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="610" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E259418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30832" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAG</genome_strand>
        <mrna_strand>CGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCANGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377584" ref_strand="+" ref_description="SGN-E377584 [TUS-20-N3]">
      <seq>aggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31218" stop="28907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="30676" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="504" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29207" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="694" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E377584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTG</genome_strand>
        <mrna_strand>AGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573812" ref_strand="+" ref_description="SGN-E573812 [33181]">
      <seq>gcgcgaggctttctaccggcaaagtctccccaatgtgactaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaagggttccgtgtagttttacctggttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcacttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagatatggtgtcacatccgttccacgctcttttctatatagtgttcatgttatcagcttgtgccctgttctcaaagacctggattgaagtttctggatcatctgccagagatgttgccaagcagcttaaggagcaacaaatggtgatgcctggctcatcgtgattccaacctgcagaaggaattaaatcgttacatacctactgcagctgcctttggaggagttgcattggtgcattgacagttttggcagatttgatggggagcgatttggatcacgaactggaatcttcttgcagtcacatccttaccagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31204" stop="28909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30904" g_stop="30676" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="355" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="491" r_length="136" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29208" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="679" r_length="188" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E573812" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30904" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCT-GTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGG-TCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGAT-GGGAGCGA-TTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTT</genome_strand>
        <mrna_strand>GCGCGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACTAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGGTTCCGTGTAGTTTTACCTGGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCACTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGATATGGTGTCACATCCGTTCCACGCTCTTTTCTATATAGTGTTCATGTTATCAGCTTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAGAGATGTTGCCAAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGCTCATCGTGATTCCAACCTGCAGAAGGAATTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAG-TTGCATTGGTGCATTGACAGTTTTGGCAGATTTGATGGGGAGCGATTTGGATCACGAACTGGAAT-CTTCTTGCAGTCAC-ATC-CTTACCAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585114" ref_strand="+" ref_description="SGN-E585114 [66832]">
      <seq>ggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcgcttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagacatggtgtcacatccgttccacgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcatctgccagagatgttgccaagcagcttaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaattaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgacagttttggcagacttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31116" stop="28913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30816" g_stop="30676" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="266" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="402" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29213" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="586" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E585114" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30816" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGT</genome_strand>
        <mrna_strand>GGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCGCTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGACATGGTGTCACATCCGTTCCACGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAGAGATGTTGCCAAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAATTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578545" ref_strand="+" ref_description="SGN-E578545 [85663]">
      <seq>ggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagatatggtgtcacatccgttccacgcacttttctatatagtgtgcatgtgatcagcttgtgccctgttctcaaagacctggattgaagtgtctggatcatctgccagagatgttgccgagcagcttaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcacaaggaattaaatcgttacatacctactgcagctgccttcggaggagtttgcattggtgcattgacagttttggcagatttgatgggagcgattggatcaggaactggaatccttcttgcagtcacaatcatttaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30813" stop="28914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30513" g_stop="30441" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="209" r_length="136" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29396" g_stop="29214" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="392" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E578545" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30513" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAG</genome_strand>
        <mrna_strand>GGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGATATGGTGTCACATCCGTTCCACGCACTTTTCTATATAGTGTGCATGTGATCAGCTTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTGTCTGGATCATCTGCCAGAGATGTTGCCGAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCACAAGGAATTAAATCGTTACATACCTACTGCAGCTGCCTTCGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGATTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232116" ref_strand="+" ref_description="SGN-E232116 [cLED-7-J16]">
      <seq>gttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagctgcctttggaggagtttgcattggtgcattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31147" stop="28986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30847" g_stop="30676" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="297" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="433" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29286" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="544" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E232116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30847" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACA</genome_strand>
        <mrna_strand>GTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279942" ref_strand="+" ref_description="SGN-E279942 [cLER-8-B15]">
      <seq>tctgttccatcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31062" stop="29020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30949" g_stop="30935" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30934" i_stop="30757" i_length="178">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30756" g_stop="30676" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="96" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="221" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="357" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29396" g_stop="29320" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="434" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E279942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30949" e_stop="30935"/>
          <exon e_start="30756" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGC</genome_strand>
        <mrna_strand>TCTGTTCCATCTTAC..................................................................................................................................................................................CCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259170" ref_strand="+" ref_description="SGN-E259170 [cLEG-43-C15]">
      <seq>cgttatctacttccattgattccgtttagttttacctgttacatctagaaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctactgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31132" stop="29021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30832" g_stop="30676" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="418" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29321" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="494" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E259170" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30832" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAG</genome_strand>
        <mrna_strand>CGTTATCTACTTCCATTGATTCCGTTTAGTTTTACCTGTTACATCTAGAAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232060" ref_strand="+" ref_description="SGN-E232060 [cLED-7-F7]">
      <seq>aggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatcgtgattccaacctgcagaaggaactaaatcgttacatacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31218" stop="29025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="30676" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="504" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29325" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="576" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E232060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACT</genome_strand>
        <mrna_strand>AGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565576" ref_strand="+" ref_description="SGN-E565576 [4017]">
      <seq>agataagattattggcctgcgcgagctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaagatttcgtgtatttttacctgttagatctaagaatgctcgccgacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctcgcagtctgcgctctgtctcccacctggtatttcatctctcaattgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaactctgttcctgttgctggtcttgcttaccttgtcactgcgccgtcaagcttggcagacatggtgtcacatccgttccacgctcttttctatatagtgttcatgttatcagcctgtggcctgttctcaaagaactggattgaagtttctggatccatctgtccagagatgttggcacagcagcttaaggagcaacaaatggtgataggctggtcatcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31220" stop="29065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30922" g_stop="30676" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.74"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="375" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.565" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="514" r_length="139" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="0.79"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29365" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="547" r_length="33" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E565576" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30922" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATT-TTGCAGTCCGCACT-TGTCTCAAACCT-GTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAA-TCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGAT-CGTCTG-CCAGAGATGTTGCCA-AACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGAT-GCCTGGTCATCGTGA</genome_strand>
        <mrna_strand>AGATAAGATTATTGGCCTGCGCGAG-CTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAAGATTTCGTGTATTTTTACCTGTTAGATCTAAGAATGCTCGCCGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTCGCAGTCTGCGCTCTGTCTCCCACCTGGTATTTCATCTCTCAA..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAACTCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCGTCAAG......................................................................................................................................CTTGGCAGACATGGTGTCACATCCGTTCCACGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGGCCTGTTCTCAAAGAACTGGATTGAAGTTTCTGGATCCATCTGTCCAGAGATGTTGGCACAGCAGCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATAGGCTGGTCATCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270982" ref_strand="+" ref_description="SGN-E270982 [cLEM-22-I21]">
      <seq>tgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaaatggtgatgcctggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31276" stop="29069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30976" g_stop="30676" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="426" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="562" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29369" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="590" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E270982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30976" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
          <exon e_start="29396" e_stop="29369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCATAGTTAATGAGACAGTATCATGATGGTTTTGGTACAATTTAGGGTTTGCGTAATCCAGAATCACTTGTTTTTTTGTCATTAAAAGTTATCTTCTCGATATTCTATAGAATGATATGGCTCCCAAGAGTATTATCGGTATGACACTTTTAACAATGATTGATTTGCAGGAGCAACAAATGGTGATGCCTGGTCATC</genome_strand>
        <mrna_strand>TGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACAAATGGTGATGCCTGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410979" ref_strand="+" ref_description="SGN-E410979 [PPI-18-L5]">
      <seq>attttgtgtaaaagttcttcacaagtctgtttagcctcataccttgtgcttattgcttcttctgtaaatgccattgacggtcaactttttaatgtatttcagcttggcagacatggtgtcacatccgttccacgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcatctgccagagatgttgccaagcagcttaaggtaaatgatcttgttgcctttgttttgttaacttttccccattctatttatttgtcccaaagtgatttgtcagtaaaattaactgaaatttaacttcgttacttttagtggttgtggtgctgtgttatggatggcaacctgaatgaaaactttttctctggggttctaactatcccccatgccgtagattatgagaagaaataattgctatagattattactgaatgaattatgaagaactcgttctttctagtcaaaataggttaaaagagacaacatcattcttctttccattgcccatagcatactatttgagttttgntacatctgacagtaatatcctacatctcttnattttgaacacngtaaaacattggttacttggagcttgatttgctcacatagcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="30705" stop="29318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30405" g_stop="29792" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29791" i_stop="29595" i_length="197">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29594" g_stop="29563" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="648" r_length="32" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E410979" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30405" e_stop="29792"/>
          <exon e_start="29594" e_stop="29563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTT-CT--TACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGTTTGGCCTCTGAAAGGAATACGTTGGTTCTTGGAGCTTGATTGCCTCACATAGCCCACAAGTTATGAGACAGTATCATGGTGGATTGCTCATAACATACTATTGAAGTTCTTTAATATCTGACAGTAATATCCCACATTTCTGAATTCTGAATCACGGTAGACCATTGGTTACTTTTGCTATGTAACGAATATGTATGTTCTTGGAGCTTGTTTGCCTCACACAACCCAT</genome_strand>
        <mrna_strand>ATTTTGTGTAAAAGTTCTTCACAAGTCTGTTTAGCCTCATACCTTGTGCTTATTGCTTCTTCTGTAAATGCCATTGACGGTCAACTTTTTAATGTATTTCAGCTTGGCAGACATGGTGTCACATCCGTTCCACGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCATCTGCCAGAGATGTTGCCAAGCAGCTTAAGGTAAATGATCTTGTTGCCTTTGTTTTGTTAACTTTTCCCCATTCTATTTATTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAATTTAACTTCGTTACTTTTAGTGGTTGTGGTGCTGTGTTATGGATGGCAACCTGAATGAAAACTTTTTCTCTGGGGTTCTAACTATCCCCCATGCCGTAGATTATGAGAAGAAATAATTGCTATAGATTATTACTGAATGAATTATGAAGAACTCGTTCTTTCTAGTCAAAATAGGTTAAAAGAGACAACATCATTCTTCTTTCCATTGCCCATAGCATACTATTTGAGTTTTGNTACATCTGACAGTAATATCCTACATCTCTTNATTTTGAA-CACNGTAAAACATTGGT.....................................................................................................................................................................................................TACTTGGAGCTTGATTTGCTCACATAGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242740" ref_strand="+" ref_description="SGN-E242740 [cLED-31-C20]">
      <seq>aggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagtgttcatgttatcagcctgtgccctgttctcaaagacctggattgaagtttctggatcgtctgccagagatgttgccaaacagctcaaggagcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31218" stop="29870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="30676" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30171" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="504" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E242740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG</genome_strand>
        <mrna_strand>AGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305942" ref_strand="+" ref_description="SGN-E305942 [cLEY-17-A6]">
      <seq>ttcttcagaaaggatatggtcttggctctggaatttccgtgttcatagcggccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatanggttcatgttatcagcctgtgccctgttctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31480" stop="29925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31180" g_stop="31120" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="416" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="541" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30306" g_stop="30225" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="623" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E305942" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31180" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAG</genome_strand>
        <mrna_strand>TTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCGTGTTCATAGCGGCCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATANGGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710262" ref_strand="+" ref_description="SGN-E710262 [FA54DE09]">
      <seq>taccgggcgtggtgctgaatttgaaggacctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgccactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatatagcgttcatgttatcagcctgcgcccctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31288" stop="29931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30988" g_stop="30676" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="438" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.565" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30306" g_stop="30231" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="515" r_length="77" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E710262" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30988" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTG-CCCTGTTC</genome_strand>
        <mrna_strand>TACCGGGCGTGGTGCTGAATTTGAAGGACCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGCCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGCGTTCATGTTATCAGCCTGCGCCCCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305943" ref_strand="+" ref_description="SGN-E305943 [cLEY-17-A8]">
      <seq>ttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31480" stop="29962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31180" g_stop="31120" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="416" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="541" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30306" g_stop="30262" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="586" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E305943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31180" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATAT</genome_strand>
        <mrna_strand>TTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238039" ref_strand="+" ref_description="SGN-E238039 [cLED-18-N10]">
      <seq>gcttagatgaacttcttcagaaaggatatgggcttggctctggaatttccttggtcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgcggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcactgcgccatcaagcttggcagaaatggtgtcgcatccgttccatgctcttttctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31492" stop="29963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31192" g_stop="31120" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="428" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="553" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30306" g_stop="30263" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="597" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E238039" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31192" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATA</genome_strand>
        <mrna_strand>GCTTAGATGAACTTCTTCAGAAAGGATATGGGCTTGGCTCTGGAATTTCCTTGGTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGCGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578385" ref_strand="+" ref_description="SGN-E578385 [LE12DC01]">
      <seq>tgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggancatctgttcctgttgctggtcttgcttaccttgtcactgcgcccatcagcttggcagaaatggtgtcgcatccgttccatgctcttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32218" stop="29966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31918" g_stop="31858" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="289" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="644" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="769" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30306" g_stop="30266" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="810" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E578385" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31918" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
          <exon e_start="30306" e_stop="30266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAGGTATTGTTCCCCTTTTCTTCAGCTAATCAATCTCTATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCT</genome_strand>
        <mrna_strand>TGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGANCATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCCATCAG......................................................................................................................................CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405420" ref_strand="+" ref_description="SGN-E405420 [PPC-18-A8]">
      <seq>tccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattagtagatcaaataagattagtgccctgcgcgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcacttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctggtgctgggtctgcttacctgtcactgcgccgtcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32179" stop="30139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31879" g_stop="31858" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="250" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="605" r_length="355" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30565" g_stop="30441" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="729" r_length="124" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E405420" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31879" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG</genome_strand>
        <mrna_strand>TCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTAGTAGATCAAATAAGATTAGTGCCCTGCGCGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCACTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGGTGCTGGGTCTGCTTACC-TGTCACTGCGCCGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251069" ref_strand="+" ref_description="SGN-E251069 [cLEG-17-A6]">
      <seq>ttcttcagaaaggatatggtcttggctctggaatttccgggttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggttcttacccaattaaactcttctacacctcaaacatgcctattattttgcagtccgcacttgtctcaaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgcttaccttgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31480" stop="30152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31180" g_stop="31120" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="416" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30565" g_stop="30452" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="530" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E251069" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31180" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACT</genome_strand>
        <mrna_strand>TTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCGGGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456259" ref_strand="+" ref_description="SGN-E456259 [cSTS-29-A21]">
      <seq>tccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattagtagatcaaataagattagtgccctgcgcgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcgcttgtctccaacctgtatttcatctctcagttgctctacaggagatatggaggaaatttcatcgtggatatgataggaacttggaaagaatctgaatattctggacaatctgttcctgttgctggtcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31647" stop="30165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="232" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="587" r_length="355" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30565" g_stop="30465" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="688" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E456259" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGC</genome_strand>
        <mrna_strand>TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTAGTAGATCAAATAAGATTAGTGCCCTGCGCGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCGCTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404019" ref_strand="+" ref_description="SGN-E404019 [PPC-12-M20]">
      <seq>tggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattagtagatcaaataagattagtgccctgcgcgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcacttgtctccaacctgtatttcatctctcagttgctctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32266" stop="30369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31966" g_stop="31858" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="337" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30676" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="692" r_length="355" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30565" g_stop="30555" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="703" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E404019" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31966" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30676"/>
          <exon e_start="30565" e_stop="30555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAGGTACCTAATTGCTAAGTTTTTTTTCGGTTGATTGCCAACTTGCTGTCACCTGTTCCAAGAGTGTAACAATTTCTATTTCTTTTTGCCCTTTTGCTGTCCTCTATTATCAGTTGCTCTACAG</genome_strand>
        <mrna_strand>TGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTAGTAGATCAAATAAGATTAGTGCCCTGCGCGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCACTTGTCTCCAACCTGTATTTCATCTCTCAG..............................................................................................................TTGCTCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463760" ref_strand="+" ref_description="SGN-E463760 [cPRO-15-N8]">
      <seq>gcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattagtagatcaaataagattagtgccctgcgcgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgcacttgtctccaacctgtatttcatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31570" stop="30379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31270" g_stop="31120" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30679" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="503" r_length="352" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E463760" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31270" e_stop="31120"/>
          <exon e_start="31030" e_stop="30679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCT</genome_strand>
        <mrna_strand>GCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTAGTAGATCAAATAAGATTAGTGCCCTGCGCGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCACTTGTCTCCAACCTGTATTTCATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589526" ref_strand="+" ref_description="SGN-E589526 [43102]">
      <seq>gtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaacggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattagtagatcaaataagattagtgccctgcgcgaggctttctaccggcgaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgcggacagcaaggttcttacccaatcaaactcttctacacctcaaacatgcctattattctgcagtctgccacttgtctcaaacctgtatttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32402" stop="30382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32102" g_stop="31858" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="473" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30682" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="824" r_length="351" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E589526" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32102" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGC-AAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCG-CACTTGTCTCAAACCTGTATTTCATC</genome_strand>
        <mrna_strand>GTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAACGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTAGTAGATCAAATAAGATTAGTGCCCTGCGCGAGGCTTTCTACCGGCGAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGCGGACAGCAAGGTTCTTACCCAATCAAACTCTTCTACACCTCAAACATGCCTATTATTCTGCAGTCTGCCACTTGTCTCAAACCTGTATTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358579" ref_strand="+" ref_description="SGN-E358579 [cLHT-22-F2]">
      <seq>gaatttccttgttcatatctaccaatatctgggaaagcattatttggggagcatttaggcccacaaccatcaataccgggcgtggtgctgaattacaaggagctataattgctctgtaccatcttactattactagaactaataggataagtgccttgcgtgaggctttataccggcaaagtctccccaatgtgacaaatctgcttgcaactgagatgatcttcctcatcgttatctacttccaaggattccgagtatgtacacctgacagatctaaaaatgctcggggacagcatggttcttacccaatcagactgttctacacctaacacatgcctattattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="31450" stop="30415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31150" g_stop="31120" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="30715" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="347" r_length="316" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E358579" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31150" e_stop="31120"/>
          <exon e_start="31030" e_stop="30715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTG</genome_strand>
        <mrna_strand>GAATTTCCTTGTTCATATCTACCAATATCTG.........................................................................................GGAAAGCATTATTTGGGGAGCATTTAGGCCCACAACCATCAATACCGGGCGTGGTGCTGAATTACAAGGAGCTATAATTGCTCTGTACCATCTTACTATTACTAGAACTAATAGGATAAGTGCCTTGCGTGAGGCTTTATACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGAGATGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGAGTATGTACACCTGACAGATCTAAAAATGCTCGGGGACAGCATGGTTCTTACCCAATCAGACTGTTCTACACCTAACACATGCCTATTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701050" ref_strand="+" ref_description="SGN-E701050 [FA14DF02]">
      <seq>gtgcatccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacctgttagatctaagaatgctcgtggacagcaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32471" stop="30463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32171" g_stop="31858" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30765" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="808" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E701050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32171" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAG</genome_strand>
        <mrna_strand>GTGCATCCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700626" ref_strand="+" ref_description="SGN-E700626 [FA13CG02]">
      <seq>tcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttccaaggattccgtgtagttttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32296" stop="30496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31996" g_stop="31858" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="367" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30796" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="602" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E700626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31996" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCT</genome_strand>
        <mrna_strand>TCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697340" ref_strand="+" ref_description="SGN-E697340 [FA02BA12]">
      <seq>tctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgctttgcactgtgttgatcttcctcatcgttatctacttccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33867" stop="30516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33567" g_stop="33472" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="464" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31296" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="516" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31295" i_stop="31212" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31211" g_stop="31120" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="608" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31030" g_stop="30816" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="823" r_length="215" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E697340" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33567" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31296"/>
          <exon e_start="31211" e_stop="31120"/>
          <exon e_start="31030" e_stop="30816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAG</genome_strand>
        <mrna_strand>TCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTT....................................................................................GCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTTGCACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574248" ref_strand="+" ref_description="SGN-E574248 [33686]">
      <seq>ctttatggcatacactctacaactgggcgcggatcctttttactggatgcgtgtcatatcttgccgtcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaaggatatggttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttagctattagtagatcaaataagattagtgccctgcgcgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcattgttatctacttccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32348" stop="30517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32048" g_stop="31858" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="421" r_length="227" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31030" g_stop="30817" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="636" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E574248" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32048" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATGGCATACACTCTACAACT-GGCGCGGATCCTTTTTACTGGATGCGTGTCAT-TCTTGCC-TCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAG-AAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTA-CTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAA</genome_strand>
        <mrna_strand>CTTTATGGCATACACTCTACAACTGGGCGCGGATCCTTTTTACTGGATGCGTGTCATATCTTGCCGTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAAGGATATGG--TTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTAGCTATTAGTAGATCAAATAAGATTAGTGCCCTGCGCGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATTGTTATCTACTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332997" ref_strand="+" ref_description="SGN-E332997 [cTOD-19-L12]">
      <seq>ttgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaactgtgttgatcttcctcatcgttatctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32386" stop="30520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32086" g_stop="31858" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31149" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="428" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31148" i_stop="31014" i_length="135">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31013" g_stop="30820" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="622" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E332997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32086" e_stop="31858"/>
          <exon e_start="31347" e_stop="31149"/>
          <exon e_start="31013" e_stop="30820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTC</genome_strand>
        <mrna_strand>TTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGA.......................................................................................................................................AAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702931" ref_strand="+" ref_description="SGN-E702931 [FA20AD07]">
      <seq>cttctctccctctcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatcttactattactagatctaataggattagtgccttgcgtgaggctttctaccggcaaagtctccccaatgtgacaaatctgcttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33884" stop="30552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33584" g_stop="33472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="481" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="709" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="30852" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="888" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E702931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33584" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAA</genome_strand>
        <mrna_strand>CTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725261" ref_strand="+" ref_description="SGN-E725261 [FC26CC09]">
      <seq>ccaaatcggccgaattgctcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcaaagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcaaaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgggcgtggtgctgaatttgaaggagctataattgctctgttccatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33873" stop="30637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33573" g_stop="33472" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="119" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="487" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="715" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="30937" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="809" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E725261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33573" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTT</genome_strand>
        <mrna_strand>CTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAAAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAAAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541266" ref_strand="+" ref_description="SGN-E541266 [TUS-61-P12]">
      <seq>gttctccatctctgttaactggtgacgcttacacataaatccgtcagatccgccccttctctccctctcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaacccatcataccgggcgtggtgctgaatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33939" stop="30663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33639" g_stop="33472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="536" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="764" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="30963" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="832" r_length="68" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E541266" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33639" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAG</genome_strand>
        <mrna_strand>GTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCCATCATACCGGGCGTGGTGCTGAATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717931" ref_strand="+" ref_description="SGN-E717931 [FC03AF06]">
      <seq>gattggcggccaatcggccgaattggttctccatctctgttaactggtgacgcttacacataaatccgtcagatccgccccttctctccctctcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatctgtgaaagcattatctggaaagcatttagtcccacaaccatcaataccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33939" stop="30683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33639" g_stop="33472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="193" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="561" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="789" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="30983" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="837" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E717931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33639" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGG</genome_strand>
        <mrna_strand>GTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558625" ref_strand="+" ref_description="SGN-E558625 [17995]">
      <seq>caaacctacatatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttggtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgctcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatgggtctnggggctctggaatttcctggttccatagcttaccaatatctgtgaaaagcattatctggaaaagcattccagtcccacaaaccatcaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33854" stop="30707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33554" g_stop="33472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="452" r_length="369" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="685" r_length="233" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.73"/>
            <acceptor a_prob="0.966" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="30985" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="735" r_length="50" r_score="0.804"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E558625" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33554" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTT-GTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATAT-GGTCTT--GGCTCTGGAATTTCCTTGTT-CATAGC-TACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTG-AAAGCATTATCTGG-AAAGCATT-TAGTCCCAC-AACCATCAATACC</genome_strand>
        <mrna_strand>CAAACCTACATATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCTCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGGTCTNGGGGCTCTGGAATTTCCTGGTTCCATAGCTTACCAATATCTG.........................................................................................TGAAAAGCATTATCTGGAAAAGCATTCCAGTCCCACAAACCATCAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557613" ref_strand="+" ref_description="SGN-E557613 [16439]">
      <seq>cggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcacctgggtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgctcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctatcaatatctgtgaaagcattatctggaaagcattcagtcccacaaccatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33799" stop="30688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33499" g_stop="33472" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="397" r_length="369" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="625" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="30988" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="668" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E557613" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33499" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="30988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCT-TGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAAT</genome_strand>
        <mrna_strand>CGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTGGGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCTCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTATCAATATCTG.........................................................................................TGAAAGCATTATCTGGAAAGCATTCAGTCCCACAACCATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573120" ref_strand="+" ref_description="SGN-E573120 [32380]">
      <seq>tctctccctatcctctctctcatggtcaaaaccctacatatagaagcatagctcgacgagaaatcgagcgaataacagtccacggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgactggaaggttcaattcaaagagaaggtcatctatactgtaattgctcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaattccttgttcatagctaccaatatctgtgaaagcattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33882" stop="30807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33582" g_stop="33472" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="478" r_length="368" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31120" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="705" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="31017" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="719" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E573120" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33582" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31120"/>
          <exon e_start="31030" e_stop="31017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTGGTATGTTTTTACTGTCTATCGGAAAAACCTATTTTGAGTTTGTCAGTACATTCATAGAGCTTATAATTCCAAGTTAATTATATTTTCAGTGAAAGCATTATCT</genome_strand>
        <mrna_strand>TCTCTCCCTATCCTCTCTCTCATGGTCAAAACCCTACATATAGAAGCATAGCTCGAC-GAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACTGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCTCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAA-TTCCTTGTTCATAGCTACCAATATCTG.........................................................................................TGAAAGCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454491" ref_strand="+" ref_description="SGN-E454491 [cSTS-23-B15]">
      <seq>cctacatatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgctcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgttcatagctaccaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33850" stop="30821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33550" g_stop="33472" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="447" r_length="368" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31121" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="674" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E454491" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33550" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCT</genome_strand>
        <mrna_strand>CCTACATATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCTCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725152" ref_strand="+" ref_description="SGN-E725152 [FC26BA01]">
      <seq>ggtcacgcgttctccctctaaaggaactggtgacgcttacacataaatccgtcagatccgccccttctctccctctcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttggctctggaatttccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33923" stop="30839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33647" g_stop="33472" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="544" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31139" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="753" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E725152" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33647" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACGCGTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGT</genome_strand>
        <mrna_strand>GGTCACGCGTTCTCCCTCTAAAGGAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569684" ref_strand="+" ref_description="SGN-E569684 [14155]">
      <seq>cggacatctccagatcggtcgctgcttctaataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgctcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaacgtggcgcggatcctttttactggatgcgtgtcattcttgcctcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcaggtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgcttagatgaacttcttcagaaaggatatggtcttgggctctggaatttcctttgttcattaggcctaccaattatctgtgaaaagcattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33799" stop="30817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33499" g_stop="33472" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="397" r_length="368" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31149" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="598" r_length="201" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E569684" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33499" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACATCTCCAGATCG-TCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAAC-TGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCA-GTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTT-GGCTCTGGA</genome_strand>
        <mrna_strand>CGGACATCTCCAGATCGGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCTCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACGTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGGCTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572549" ref_strand="+" ref_description="SGN-E572549 [31720]">
      <seq>tctctcctatctctctctcatggtcaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataaacagtccacggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttctctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggcatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgtaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtactgtcggggcatgtatggcagtgttagccaattggcgtgttgggaaatgctatcctcattatcctccaagctctgctttgctgctatcctttgtcatgtgcttagatgaacttcttcaggaacgggactatggtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33882" stop="30858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33582" g_stop="33472" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="479" r_length="370" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31156" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="679" r_length="200" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E572549" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33582" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAAT-AACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGG-ATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCG-GGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGG-ATGTATGGCAGTGTTAGCCAATTGG-GTGTT-GGAAATGCTATCCTCATTATCCTCCAA-CTCTGCTTTGCTGCTAT-CATTGTCATGTGCTTAGATGAACTTCTTCA-GAA-AGGA-TATGGTCTTGG</genome_strand>
        <mrna_strand>TCTCT-CCTATC-TCTCTCTCATGGTCAAA-CCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTCTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGCATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGTAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTACTGTCGGGGCATGTATGGCAGTGTTAGCCAATTGGCGTGTTGGGAAATGCTATCCTCATTATCCTCCAAGCTCTGCTTTGCTGCTATCCTTTGTCATGTGCTTAGATGAACTTCTTCAGGAACGGGACTATGGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450571" ref_strand="+" ref_description="SGN-E450571 [cSTS-9-B10]">
      <seq>caaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctgcttttagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagttgcttatgtcctgtcggggatgtatggcagtgttagccaattgggtgttggaaatgctatcctcattatcctccaactctgctttgctgctatcattgtcatgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33856" stop="30889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33556" g_stop="33472" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="453" r_length="368" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31189" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="612" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E450571" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33556" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTT</genome_strand>
        <mrna_strand>CAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557766" ref_strand="+" ref_description="SGN-E557766 [16616]">
      <seq>atttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgctcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaagccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaatttgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggacccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtcggtgaggcagtttgctttatgtcctgtcgggggatgtatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32463" stop="30968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32163" g_stop="31858" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31268" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="391" r_length="83" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E557766" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32163" e_stop="31858"/>
          <exon e_start="31347" e_stop="31268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAA-TTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGA-CCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAG-TTGC-TTATGTCCTGTC-GGGGATGTATGGCA</genome_strand>
        <mrna_strand>ATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCTCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAGCCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTTGCTTTATGTCCTGTCGGGGGATGTATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329004" ref_strand="+" ref_description="SGN-E329004 [cTOC-24-M11]">
      <seq>tcacgcgttctccatctctgttaactggtgacgcttacacataaatccgtcagatccgccccttctctccctctcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctttcttttctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgattgctgtncggtgagcagttgcttatgtcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33945" stop="30983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33645" g_stop="33472" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="542" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31283" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="607" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E329004" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33645" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGCGTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGT-CGGTGAGGCAGTTGCTTATGTCCTGT</genome_strand>
        <mrna_strand>TCACGCGTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTNCGGTGA-GCAGTTGCTTATGTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296280" ref_strand="+" ref_description="SGN-E296280 [cLET-24-P20]">
      <seq>ttctccatctctgataactggtgacgcttacacataaatccgtcagatccgccccttctctccctctcctctctctcatggacaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctacctctagatagttctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttgtttcttttctacctgaagttcacagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgttcgggaggaccgagcactccttaatggtgctcaaaagctattgggtatcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33938" stop="31015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33638" g_stop="33472" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="535" r_length="368" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31347" g_stop="31315" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="568" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E296280" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33638" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
          <exon e_start="31347" e_stop="31315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCTCAAAAGCTATTGGGTATCCTGAT</genome_strand>
        <mrna_strand>TTCTCCATCTCTGATAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGACAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTGTTTCTTTTCTACCTGAAGTTCACAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCAAAAGCTATTGGGTATCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563368" ref_strand="+" ref_description="SGN-E563368 [1809]">
      <seq>tctttatggcatacactctacaactggcgcggatcctttttagctggagtgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcacaaacatcattcaagtggacaacaatgtccgtgaggaccgagcactcccttaatggtgctccaaaagctattgggtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="32349" stop="31019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32049" g_stop="31858" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31347" g_stop="31319" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="227" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E563368" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32049" e_stop="31858"/>
          <exon e_start="31347" e_stop="31319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTA-CTGGA-TGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCA-AAA-ATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACT-CCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTGTATAATTTGGATTTTCAAGGCAAATTTCATTTTTCAGATTTTCTCACCCTTGAACTTTTACTGAACATTCATGCCGTCATTTGATCCTGGTATGTAGACCTAGATTACTCTGTGCACCCCCTGCCCTGCCCACACACCCACATCCCCAAAGATTTAGATGCATCTTTTTGTACTTGTTACTCAGTTACCTAAAAAAATTCTTTCATGCTGTTAAGTAGATTTTTTGATGTTTCTTTATCTTTTCTGGTCAATGAAGCTCTCTCCTGTGCTCTCTAACAATTTATCCCATGCAGTAATGGTGCT-CAAAAGCTATTGGGTATCC</genome_strand>
        <mrna_strand>TCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTAGCTGGAGTGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCACAAACATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGTGCTCCAAAAGCTATTGGGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483790" ref_strand="+" ref_description="SGN-E483790 [cSTE-10-N20]">
      <seq>gtgacgcttacacataaatccgtcagatccgccccttctctccctatcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggacaacaatgtccgtgaggaccgagcactcctgtaagttagtttgtttttaagattttatttcttgtattttgtttctttactcgtttaacaactatatatgtatattgcatcagttctattttgctagttgtctattgttttaattccatatccagtggtaatagtatagtttggaaccttcagaaaggatattgtttggacttatggggatgatatgatctgtaactttaatgctgaaaatcatttgcagaacctcgattagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33918" stop="31341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33618" g_stop="33472" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31641" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="750" r_length="603" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E483790" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33618" e_stop="33472"/>
          <exon e_start="32225" e_stop="31641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGT-A---AGTTTGTTTTTAAG-----A-TT-TT-TA-----TTTCTTTAGTTGTTTAACAAC---ATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTG</genome_strand>
        <mrna_strand>GTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTATCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTCCGTGAGGACCGAGCACTCCTGTAAGTTAGTTTGTTTTTAAGATTTTATTTCTTGTATTTTGTTTCTTTACTCGTTTAACAACTATATATGTATATTGCATCAGTTCTATTTTGCTAGTTGTCTATTGTTTTAATTCCATATCCAGTGGTAATAGTATAGTTTGGAACCTTCAG-AAAGGATATTGTTTGG-ACTTATGGGGATGATATGATCTGTAACTTTAATGCTGAAAATCATTTGCAGAACCTCGATTAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426784" ref_strand="+" ref_description="SGN-E426784 [STM-47-M11]">
      <seq>gtgacgcttacacataaatccgtcagatccgccccttctctccctatcctctctctcatggtcaaaaccctacaaatagaagcatagctcgacggagaaatcgagcgaataacagtccacggacatctccagatcgtcgctgcttctagataattctgttaatagtgaacaatgggaggaggattcagagtgctgcaccttgtgaaaccatttctctcattcctacctgaagttcagagtgctgacaggaaggttcaattcaaagagaaggtcatctatactgtaattgcgcttgctatttttctggtttgcagtcagctccctctttatggcatacactctacaactggcgcggatcctttttactggatgcgtgtcattcttgcctcaaaccgtggtacagtcatggaacttggaattactccaattgtgacttctggaatggtgatgcaattgttagctggatcaaaaatcattcaagtggancaacatgtccgtgaggaccgagcactcctgtaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33918" stop="31551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33618" g_stop="33472" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="31858" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="515" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E426784" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33618" e_stop="33472"/>
          <exon e_start="32225" e_stop="31858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT</genome_strand>
        <mrna_strand>GTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTATCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTGCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTCTCATTCCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGANCAACATGTCCGTGAGGACCGAGCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562505" ref_strand="+" ref_description="SGN-E562505 [945]">
      <seq>ggcatctctgttactggtgacgcttacacataaatccgtcagatccgcccttctctccctatcctctctctcatggtcaaaaccctacaaatagaagcatagctcggacggagaaatcgagcgcaataacagtccacgggacatctccagatcgtcgctgcttttagataattctgttaatagtgaacaatgggaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="33933" stop="31892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33635" g_stop="33472" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246">
            <donor d_prob="0.990" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32225" g_stop="32192" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="199" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E562505" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33635" e_stop="33472"/>
          <exon e_start="32225" e_stop="32192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTC-GACGGAGAAATCGAGCG-AATAACAGTCCAC-GGACATCTCCAGATCGTCGCTACCTCTGTGAGTGTCTCCGATCTCTTCTGCATGTATTTTTCTCATTTAGAGAATTGATTTTCTTTCTTTATGGAAAAAAAAATTAGATCATCTATGTACCGGAAGAAGAGATCTATAGATCGAGAAATCGGTGTGAAAATGAAATTATTTTTTGTCGAGCTGAGATCTGAATCAGTCCATAGATCTGATGAGTTTATTTAGCTCAAGATCTGTTATATGTTTGAGTTGATTATATATGTATGTCTTTGTTTATATGCATGTATGTGTAGATATATGAATTTTGTAGAGTACGAAATTCTGGAAGTTTTTTTTTTGGCTGTTAAATTCTGATTTGTAATGTGATGGTAAAAGGATCTAGATCTGAAAAGTATGCTTGTGTATCTGCGTTCTGTTTTCATGATATCTGGATAACGATATGGCTTGATAGACAGTGTGAGTAAATTGATTTATTATTTATGTGACATGTGATGGTCACTAATCGACCATGAAATACAAAAATATTTGAAGTGGTACATGAACAACAGAGTTGAGATGTTTTTGTATCTGTATGGACAGTTTGGTCTTGTTGCAAGCATTGAAGAAGTACTATTTACTTGGAATGCATGAATGGTTCTTAGATTTGAATCTCCAAATTTTGTTTTCATAATGACATAAGAAAATTTTAAACTTGATATAAGTATGGATCTTTACAATAAAAGAAGTCTTCTCTGATTAAATTATGTCGAACCTGTATTAGTATATGTAATCCCCCAAGAGAATTGTTGCAAGGATATAATATTAATTGTATATTTTAGTGGATTTGTCCTATTATTAGCAGGATTCATTGATAGATATATGTGATATCCATGTTTTAGTCCTTGGAATTGGTGGTTGGGGGTGGAGAAGAAGAAATAATCTCATTTTGTCTTCTTATAAAGAAAGAAACTTCCTCAATTTGATTATCCTTATCAGCTCAATTTATATGCTTAGGTATATTCCTGTTTTTGTGTTCCAAGCATATCCTATGTGCTCTCCATTAATATATATGCTTCACTGAATCTGAATTTGTGATAACACCTTCCATTGATTGAAAATTTGCTTTAAATTGTATCTTGAGAATGTTAATACTGATATTATATCATCTGAAATTAATCTTTCTGGCTAGCTATGCACATTAAAATTACACAAGATCATGAGCGTAGTTGAGGCACTATATCTTCCCGGTTATTTGTCTGAATAGTTTTTGTCTTTGTTTTTTTTATGGTTTGAACAGAGATAGTTCTGTTAATAGTGAACAATGGGAGGAG</genome_strand>
        <mrna_strand>GGCATCTCTGTT-ACTGGTGACGCTTACACATAAATCCGTCAGATCCG-CCCTTCTCTCCCTATCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGGACGGAGAAATCGAGCGCAATAACAGTCCACGGGACATCTCCAGATCGTCGCTGCTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCTGTTAATAGTGAACAATGGGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710573" ref_strand="+" ref_description="SGN-E710573 [FA55DD03]">
      <seq>gtttctacccgcaatccccaacccggcaaacccctaatcttcatcattttcttcaggatttgactctaatcgtgaacaatctagggctggaatagagcggttttcgcagtagtaatcatgaatatcttcagactggccggagacatgacacatttgattagtgtcttagttctcctcctgaaaatctatgctaccaaatcatgctcaggaatatcattgaagacgcaagagttatatgctattgtgtttgtggctcggtatctggatttgttcacagacttcatctctctttacaacactgtgatgaaactggtttttattgggagctccttggccattgtctggtgtatgaggtaccatcgagttgttaggcgctcatatgaccgtgagctagacacttttcgctattggattcttctgggggcgtgttttgttttggcacttgttcttcatgagaagtttacccttcaagaggtgttctgggctttctccatatacctacaggcagttgccattcttccccaattggtgctcttgccaagaactggaaatgttgataatctgactggacaatatgcgttctttcttggggcctaccgtgcattttacatcttaaactggatttaccgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="35787" stop="43124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36087" g_stop="36294" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36295" i_stop="37310" i_length="1016">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37311" g_stop="37576" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="474" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37577" i_stop="39242" i_length="1666">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39243" g_stop="39358" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="590" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39359" i_stop="42780" i_length="3422">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42781" g_stop="42824" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="634" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E710573" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36087" e_stop="36294"/>
          <exon e_start="37311" e_stop="37576"/>
          <exon e_start="39243" e_stop="39358"/>
          <exon e_start="42781" e_stop="42824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTACCCGCAATCCCCAACCCGGCAAACCCCTAATCTTCATCATTTTCTTCAGGATTTGACTCTAATCGTGAACAATCTAGGGCTGGAATAGAGCGGTTTTCGCAGTAGTAATCATGAATATCTTCAGACTGGCCGGAGACATGACACATTTGATTAGTGTCTTAGTTCTCCTCCTGAAAATCTATGCTACCAAATCATGCTCAGGTTCTTATTTCAACTTGCATTTTCATTCAGTTCCTTGATCAGCTATTGTATATATTTTGTATCATGTAAATAGTTTTGCATCAGAAGGTGAAACAGCGAAACCTTAAGGTACTGTTTTATATTAACTTTGTCGACTTTATTGGTGTTGAAACCTGAATGAGCAGTTTTGCTTCATACATGAATGACCGTATCTGATTGGCTCTTAAAATTGCGAGTTATGTTTTTGATTTTGTATTCATTGGAATTGAATTATGCAATGATGTGTTTGAATGGGTTTCCATTAAGCAGTTCATTGAGTGAAAAAATTAATGCTCATTTGATGAATTAAGAGTGAGTGTTAGTCCATTTATGTGCTAGTTAGTGATTCGTGCAATGGACATGATACATTATTTATAGGGAAGTAGTTACATTACAACTCCTGAAACTAATAGGACTTGGACGATATTAGACCTGCTGAGAGATTGCAATGAGTGAGCATTCTTTTTGATTTTACTGAGGAAATCTGTGAATATAATGTTTTGAAACTTCTTTGAGCCCAGGAACTTTTACTAGGTTATCTTCTTGCTACGTATTAAGTAGATATTTGGATTCATGTAGGACATATAGTGAAATCAGTGGCACTGTGAGTAATTTGATAATATGAGAAGACAGTGTTAACATGTTCGATTGTATGGGATGTTGTCAATAAAGGTAAATCAACAACCAGTTGAAGTATGGCATGTTAGGACCTACTACAAATAAGGATAGTCATCGCACATTGGTATTAGTATTGATGTGACAGGTAATTTAACAGATCACTAGATGGTATAAAATATCATTGTCTATTATTGCCCCCTCCTCCCCCAAAAAAAATACGAAAAGAACCGGAAAAGAATGGAAGATGACCTTTTCTTGTAACACAAAAATAAACATTTGGACTTGTTGCATTTTCCGGTAGCTTGAAGTATACTTATGGTGAAATCTGGCTGACATGTAGCTGGAAAATTGTTGGCATTGAGAGTCTTTGCTGTATTCAGGAATATCATTGAAGACGCAAGAGTTATATGCTATTGTGTTTGTGGCTCGGTATCTGGATTTGTTCACAGACTTCATCTCTCTTTACAACACTGTGATGAAACTGGTTTTTATTGGGAGCTCCTTGGCCATTGTCTGGTGTATGAGGTACCATCGAGTTGTTAGGCGCTCATATGACCGTGAGCTAGACACTTTTCGCTATTGGATTCTTCTGGGGGCGTGTTTTGTTTTGGCACTTGTTCTTCATGAGAAGTTTACCCTTCAAGAGGTTAGTGATTTCTAAGTGTTCTAAATATTTCATGTGGAATTGTCCTAGCATTGATAATCATGTTTTTTGTCACTTAATTTGTAATGTTGGTGGTGACTTGTGTGAAGCTGATCTTGGCAAGCACAACATCCTGTTGGTGCTTGCAACAACCATATTTTCAGAATTTCAATAGGCTGGCTACTGTGAAATAGTGAATTTCATTTCTAGAATGTTGTGTAGCTTTGATTCCATGAATAGTGAACTTGAATACAACAACCATGTCTTATCCTAAGGTAGTTTTGGTTGGCTATATGATTTAATCTCATCTCAAACACCCGTATGCTGATGTAATGCATGCTAAGTGGATATATTTCAACAATATATTCTCCGTTATGAAATCAATTGCAAATTGACTAGTTTTATGCTGGCTTACTGCCTTTGCAACTCTCCTATTTTATTCGGATGTGGAACCAACAGCATGAACATTCTCGCAAAATCAGCTCATCAAACACTGTAAAATGTTTGTTTGCTTATTATTCACATGCTCTTCTGGATGTACATGGTTATAGCAACCCTTGAGGTAGTGCTTGTACAGACCTTCTTAAGGTGATCCGTTTTTTGGTGGCCTCTGTTCATGACAAGCTTTGAAAGATTTTACACTGGCCGAGGTGTTCCCATGATAAGATATAAACCCTTAACATTGACAATATACAATCAGCAGCTCGTAATATGTTAAGATGATATGCTTCCAGTCATGTGAATTGATAGACCTTTGTTAACTGATCAGCCCGTTAACATCAGTCTACCCCCTTCAAGAATAATTTCTGTCATAACCGTTTATATTAGTTGTTTCTTAAGTGCCTTTTCTATTGAAATGTTGTTATATTGATTTATCCAGATCGAGGGCCGACAAAATTGCGACTGAAGTTTGATCTTGTCTATTTTATATTTGACTCAGGCTGCTTTCCCCTATTAAAGTCAGCTGAACCCCCTAAAACTTTTTTTTTTCCACTGCGCTATTCTTATCCTCTGTATCCTTACTGCGGTCATTGCAACTCTCCAAATGTATGGGCTTGGTTTCTTCTGCAGGTTTTTTACTACTTGGTGTTGTTCCTATTATGCTACATTGCAATTTGCATGAGTAAGGACATCTTCTTGTCTATATCATTTGCAATCATCTTATTTATTCATTCTTGGTTCCCCTACCCTTTTGGTCATCTCCAGATATTGTTTGACCGTCTTCACTGTTAAAATATGAGCTTCATCCATTTCCCCAGTACATTAATAGACAAAAGATAACTGTGATTTTTCTGTAGCCATGGTATCGTTATAGTCAGACCCATCAACTTATATCATTAATGATCGAGTTCTTCTTCTTCCTTTTTTTTTTTTTTTTTGGGTGGGTGGGTGGGTAAGGGACGCGGAGAGGCGTTCTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGCGTAGGGAAGCGGAGATTGAACCTTACACTTGGTTGCGAGGTGCTCTACTAATAAGCTGCCATTCAATTTTCTGAATGACTGATTAGAATTTCTGCAGAGACCCTGTGGCAGAGATTGTGTTGCTTGTTTCCTTCTCCTTTTGTGGGATAGTCTAGATTCTCGAATTCATATTTGCTCGCTTCCTGTTTACACTGTTGATGCTACATGTAATGTTGTTCCAGGTGTTCTGGGCTTTCTCAATATACCTAGAGGCAGTTGCCATTCTTCCCCAATTGGTGCTCTTGCAAAGAAGTGGAAATGTTGATAATCTGACTGGACAATATGTGTTCTTTCTTGGGTATGCTTCATCTCCTGTAAATCTGGCGACTTCCTAAAAGAACATTGTTTTGCATAATATGTTGAAAATTGTAGAGAATTTGTATTGATTTGTCCGTATCTATTTTTTATAAAAAATCTGAGTTCTATATAACTCACAGCTGAAATTTGAAATTTGAAAATTCATCATTTATTTTTTTCATAAATATTGCAAATTTGCTTTCCAAATAGCAATAGAGTGCTGGTATTTTACGTAAAACTAGAAAAGGCTTGTCTCAGTTTTAACTGTGAAGGAGTTAATGAAGTTCGTTCACATATCGTATCATTTACAAATTATTGTAAACATTTAAACTTGAAACTATGTGGTACATTTACTCTTCCTCCGAAGCATCGGTTCTCTCTTTCCATAAACCAGACGATGTGTGGTGGAACTGTATTCCATCTTAACTATCTTTCTAGTTTCTGTCTTCCTTTTTTTTTTTTTTTGAGAAGGTAATGACTTGTATTCTATTTTCACAAAAACAGAAACCTGCCACGACAAGTTACTGTCCTTTAAGCATTGAACTTGAAATAGATTTAGGAACATACACTAGATATTCCATGTTACAGTAAAATGCAAAAGAAGATGTCTTGTGTCCTGAGAATCCTTTTCACGTGTAACATTATTGCAAGTAATGAATTTCTTATTCTGCAGGTTATCCTAGTTAGGTTGACTTTTTTCATATCTATAAGACAAAACATGCCGTTCTTGAAGGGCCTTTTTCTTTTCTTAAGCATTTTCTCGCCCCAGTGAGTGATTATTGCTTGGCTTTGTCAATTTACTTGACTGAAAAGTCTTCTGTGCTTCAAAACAGTGAATTAGATCCGGAAGTTGGCCCATCCTTCTCTAACCTCAAAAGAGCCAAGCTCATCTGCGGATCTCGTAGTCCATGGCAATTCTTCCAGAACCTATTGTGCTGGCAATTCTTCTTGAATCTAAGCTTTTGTGTGCATTTTTGTATCAAGTTTTTGTGGCTTCAACAAAATGTGGCAAAGGTCTACCAATATGGGATTACCTCCTTTTGAGAATCCAAACGTAGTATCTTTGCTACCTTCTTATCCTTTTTCCATCACCTACCTTGAGATTCACCCTGGAAGAAAATCATCCCATAAATTTCTTATATTTATTCATGTTGCAAATCCATGAGTTGATATTGGATCAGTTCACCAATACCCACACCTCCAAGCATCTTGTATTTCTTTTACCATCTCATCTACCTTAACATTCTCTTTGACATTGAATTGCTCCCACAAGATACATATAAGTTTCCACTACATAACAATGAGCTGAGATATTGGATTTGTGCAACAAGAGCCATTCACACATACTTTGCCTTTGATGGCATTCTTCAACACTTGCTTGTTCATTACTAACTGCGCAACGTTAATTATAGGGACTTGTATTATCCAGCCTTGGGTTTTTTCAGCTAAACCACTTTCCTTCTTACCAATTACAATAGTCACTGCTGTCTATTTCACAAGTGAACTTTTTCTTTCCTGAGTTACCTCAGAAGTCTCTCCTAATTCTGTCCAACTGCCTCTCCATTTTTGTAGCTTGCCTCTAAAAGGGAAGTCTCATGCATGCTGCTGGAAAAACTCCTCCTCTCTGTCCTAACATATTTCCAAAAATGAGGAATAGATACGCTTTGCCAGATTTATGAAGCCCAGAAACTGCCACAAAACCAAAAGTATACCTCGCGACTCACAGATATCTTAGTCTTCTATCCTTTGTTCCAACAAAAAATTGAGTCAGCATAGAGGAACTCCGAGATAGTGACTGTATTATTCCTTTTTGTGCCCTCTTTGTACCTGTTATCCAACATTTGTACATAGCTCTATACAACATTCCTCAGTTGAACAATCTGAAGAGAAAGAACCGTAGAGGGTGTGCCTGTCACAACCCCCTCTGAAAATTCTCTTCCTGTAGACCCATTTGTCTTCACTGTTCAAAAGCCACAGTATTACATTAATATTATCTCAAGTCCACCAAGAATTCCTAAACTTTAGTACCATACTCAAGCTTTGATTCTTTGTGCTTTGGTTTATGTGGGGAACTCAGAACAGAAAGGGAATGTGGTTCCTCTCTTTGACATTTATCTGTACTGTTCAATGTGTAATTTCCAACCTTTTAGTTTCTGTGCCACCGCATAACTTTTTCATGACATCCCCAATACACGCCCACCAAACATCTGTATACAAAATTCATCCTTCACTTCAATGATCCTTCTTCCACAAAAATTCAACTGCTATTAGAGTCAGTTTTGCTTGTGACTTTGGTGTCAACATACTGTACAATTTTTCAAGGCTTTACTTATGAATAGCTTTTTTCATAGGCTTCGTTGCTAACTCGGTTGGCTGGTTTATTTGGTGAATTTTATTAGTTTCTTATCTACATCAGCCCTTTCATTATTGTGGTTAATTTTCAGAGTGATTGCTGCCGGACAAATCTGCACTATGTATTGAGTTTTAATGACATTCTTCAGTTTTCAAGGATCTTGGGTAGTCATAATTTGATTCCTTACAAAGATTGTGGAATTTCCAATTATTATTAGGCATTAGATTGAGGTACTTTTATTATACTTAACTTGTTGGCACTTAAAATCGTGAGCCTCCTTTGGCAGTCAAAACACTGTCATTTGAGGGCGTTTCTAGAGAACGAACACAAGTGTTATTGCTGCTAGAGGACATGTCTTTTTTTTTTGGCAGCATGTATAACTTTGATGCCATAATTGTCGTGCTCTCCCGATGAAATGGATCTGATCACGCATTGACATTTGTTGGTTTAAAATTTGGTCTTAGCTTTATATGTTTGCTTTGAGCTAACACTCCCTCTGTTGTGATTGCTTGCCATGAGCATCTCCATAATAAGGGAAATTCAATGAATGGTTCCTTTTCTGAGTTGAGTGCCCGTGCTGTGACTTAAAACAAATCTTGTCTATAGCTTGATTGCAGTGAAGAGATATTCAGATCCATTAAATCATGCTATTTATGTCTGTGTAGTAGTTACACTTGCAAAATAGAATGCCACTATCTCAGAATGGAACTACAGCATAAAGCTACAGAAATGATGGGGTCTTCCATTTAAATGTTTTCTCGAGCGATGGAACATTTTTTTGTGATAGCACTTCAATATGTCACTGCAAGACAAGGGAAAATGCTTCCCTTTCTTGTACCGTTCTCTCACTGTCTACTCACGTTTATCATCTCTAGTTTTGTTTCTCTGGCATTTCATATTATAATACTTTGAGCTGAAAGAGATCTAACAATTAGTTCTTAAATTATGTATATGCGGCATGTGTTCCTATCTAGTTGAATAATGTCGCGTGATGATATTTACAATTTGATTTCAATTAGTTATGATTGATTGGGTATTGTTACTGAGATGCTGGTTCTATGCGATTCCAGGGCCTACCGTGCATTTTACATCTTAAACTGGATTTACCGCTATC</genome_strand>
        <mrna_strand>GTTTCTACCCGCAATCCCCAACCCGGCAAACCCCTAATCTTCATCATTTTCTTCAGGATTTGACTCTAATCGTGAACAATCTAGGGCTGGAATAGAGCGGTTTTCGCAGTAGTAATCATGAATATCTTCAGACTGGCCGGAGACATGACACATTTGATTAGTGTCTTAGTTCTCCTCCTGAAAATCTATGCTACCAAATCATGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCATTGAAGACGCAAGAGTTATATGCTATTGTGTTTGTGGCTCGGTATCTGGATTTGTTCACAGACTTCATCTCTCTTTACAACACTGTGATGAAACTGGTTTTTATTGGGAGCTCCTTGGCCATTGTCTGGTGTATGAGGTACCATCGAGTTGTTAGGCGCTCATATGACCGTGAGCTAGACACTTTTCGCTATTGGATTCTTCTGGGGGCGTGTTTTGTTTTGGCACTTGTTCTTCATGAGAAGTTTACCCTTCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTGGGCTTTCTCCATATACCTACAGGCAGTTGCCATTCTTCCCCAATTGGTGCTCTTGCCAAGAACTGGAAATGTTGATAATCTGACTGGACAATATGCGTTCTTTCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTACCGTGCATTTTACATCTTAAACTGGATTTACCGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395276" ref_strand="+" ref_description="SGN-E395276 [TUS-14-N1](-)">
      <seq>tttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgagtaagacaccatggaaggtacccgaatccttttcatatgcatcaggagatataattcccatgtttgctggtgaaatgctcgactggttgccggctcctttctgagaaaggaaaaaaaaaagagattcccattctcatttgttgttcttgtactgtaatactgtgatttaactaaagatatagagtgcaggtgtgtcatctttcctttcatgttttagatattatcgcgatgataattattgaaacagtaagttttctatatgtgactgaactaaagctttagttcgacgcattatgattgattttaaataaagatgaggtttagtacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49058" stop="38690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48758" g_stop="48679" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="241" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44111" g_stop="43688" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="665" r_length="424" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43687" i_stop="42596" i_length="1092">
            <donor d_prob="0.329" d_score="0.94"/>
            <acceptor a_prob="0.695" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42595" g_stop="42583" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="678" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E395276" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48758" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="43688"/>
          <exon e_start="42595" e_stop="42583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAGGTCACCAAAGAGCTCCTGTGTTCTGAAGTTCTTAAATTGTTCGTTTGATTTTGAAGATTTACTTTCCTTATCCTTCATTGCTTATTATGACTTACAATTTTCAAACCAAATTGAGTGATGCATTAGTGTCAAAGACACTAGCAACAATGTACCAGAACGCGCAATTGGATATTAAAATTAATCAGCATTTGTTAAGAACGAAAGACAAAGGCGCCTCGAAAAGGAAGAAGATAGCAGACATCTGAGAACACCTTTATATGAACGACGCAAAATAATTGATTAGTCATACCGCTATATCTTTGAAAGTTTGAATCACATTTGACAGGAATGCAGACAACATTTTCAAATTAAACATATTTCTGACATATTAACAAGGGTACTTTATCTGAATCTAACAATGTAAGAGGAGCTCATTGAAATACTTGACCCTCGGCCAAACTCCATGTATGATCTCACATCCAAAAAAAAGTAGTATCCCAAAATCATGTCACAAGCCACGGCATGAAACCAGATTACGGTTAGGTGTTAAAACTGTTCATCATATATCTTCATCGCCTCAGGCTGGCAGTTGAAGCTTAGCATTATTTTTCCAGCTGCAAAACAAATTTGTTAGTAGTTTGTTTACGTCATCCAGAGAGGAGCCACTTCAGGAAGTTTTAACAAATTGTTACCTGATGAAGTAATAATAAAAGAAATCTGCATAAAGGGCTGTCTGGACAAGGCCAGAGACGCAAGCTACAATAAGAAGAGAAAAGCAAAGGGAAATTCAACTTTAAAGAACCATTGCAAGTAATTGCAAACAAACAGTACTGGTTGTACTTCCAAAAACTTACAAATCCATCTAGTGAAACGCTGCTCTGTCAGATAGCGGTAAATCCAGTTTAAGATGTAAAATGCACGGTAGGCCCTGGAATCGCATAGAACCAGCATCTCAGTAACAATACCCAATCAATCATAACTAATTGAAATCAAATTGTAAATATCATCACGCGACATTATTCAACTAGATAGGAACACATGCCGCATATACATAATTTAAGAACTAATTGTTAGATCTCTTTCAGCTCAAAGTATTATAATATGAAATGCCAGAGAAACAAAACTA</genome_strand>
        <mrna_strand>TTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTTTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACGCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349621" ref_strand="+" ref_description="SGN-E349621 [cTOS-1-J8]">
      <seq>tcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgagtaagacaccatggaaggtacccgaatccttttcatatgcatcaggagatataattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaaaggaaaaaaaaaagagattcccattctcatttgttgttcttgtactgtaatactgtgatttaactaaagatatagagtgcaggtgtgtcatctttcctttcatgttttagatattatcgcgatgataattattgaaacagtaagttttctatatgtgactgaactaaagctttagttcgacccattatgattgattttaaataaagatgaggtttagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49041" stop="43389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48741" g_stop="48679" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="224" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44111" g_stop="43688" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="648" r_length="424" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E349621" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48741" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="43688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAG</genome_strand>
        <mrna_strand>TCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433890" ref_strand="-" ref_description="SGN-E433890 [STM-59-K21]">
      <seq>ggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagaccgttggtgcagaaatttccacaattgaaggtcgtgatggagcatgttaccaccattgatgctgttaagtttgttgaatcttgcactgaaggatttgttgcagcaactgtcaccccacaacatcttgttttgaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcgcttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagagtgttcttgtggatgtgctggtatttacaatgcacctgtagccttgtcagtatatgcgaaggtgtttgaaaaggaaaatgcactcgacaagcttgaagcatttactagcttcaatggaccagatttttatgggcttcctaggaacaactcaaagattaagttgagtaagacgccatggaaggtacccgaatccttttcttatgcatcaggagatattattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaatcatttgtcattcttgtactgtaatattgtgattcaaccaaagatatagactgtaggtgtatcatcttttctttcatgttgattagatattatcacgatgataatatcctttcagctaataaattatgnagacaataagctttgcacgctcccccaattaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49351" stop="43508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49051" g_stop="48912" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="257" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="418" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44111" g_stop="43775" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="730" r_length="312" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E433890" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49051" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="43775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTT--TTAGATATTATCGCGATGATAATTATTGAAACA</genome_strand>
        <mrna_strand>GGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCGTTGGTGCAGAAATTTCCACAATTGAAGGTCGTGATGGAGCATGTTACCACCATTGATGCTGTTAAGTTTGTTGAATCTTGCACTGAAG....................................................................................................................GATTTGTTGCAGCAACTGTCACCCCACAACATCTTGTTTTGAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCGCTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAGTGTTCTTGTGGATGTGCTGGTATTTACAATGCACCTGTAGCCTTGTCAGTATATGCGAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTCGACAAGCTTGAAGCATTTACTAGCTTCAATGGACCAGATTTTTATGGGCTTCCTAGGAACAACTCAAAGATTAAGTTGAGTAAGACGCCATGGAAGGTACCCGAATCCTTTTCTTATGCATCAGGAGATATTATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCT------------------GAGA-----A---TCATTTGTCATTCTTGTACTGTAATATTGTGATTCAACCAAAGATATAGACTGTAGGTGTATCATCTTTTCTTTCATGTTGATTAGATATTATCACGATGATAA-TATCCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395277" ref_strand="+" ref_description="SGN-E395277 [TUS-14-N1]">
      <seq>gttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgagtaagacaccatggaaggtacccgaatccttttcatatgcatcaggagatataattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaaaggaaaaaaaaaagagattcccattctcatttnngtgtcttgtactgtaatactgtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49377" stop="43553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="283" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="444" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44111" g_stop="43853" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="703" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E395277" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="43853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTT</genome_strand>
        <mrna_strand>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTNNGTGTCTTGTACTGTAATACTGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433889" ref_strand="+" ref_description="SGN-E433889 [STM-59-K21]">
      <seq>cacgacaaattctcaagatggagtgactgatcttttcgggaagtgtttaccagttctacaagaaatggttgagcataatatgcctctgctggttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagaccgttggtgcagaaatttccacaattgaaggtcgtgatggagcatgttaccaccattgatgctgttaagtttgttgaatcttgcactgaaggatttgttgcagcaactgtcaccccacaacatcttgttttgaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcgcttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagagtgttcttgtggatgtgctggtatttacaatgcacctgtagccttgtcagtatatgcgaaggtgtttgaaaaggaaaatgcactcgacaagcttgaagcatttactagcttcaatggaccagatttttatgggcttcctaggaacaactcaaagattaagttgagtaagacgccatggaaggtacccgaatccttttcttatgcatcaggagatattattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaatcatttgtcattcttgtactgtaatattgtgattcaaccaaagatatagactgtaggtgtatcatcttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49833" stop="43514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49533" g_stop="49443" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365">
            <donor d_prob="0.252" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="257" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="374" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="535" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44111" g_stop="43914" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="733" r_length="198" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E433889" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49533" e_stop="49443"/>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="43914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTGGTAATTTGATGCTAAACTTGGTGCTAAGCTTTCTTCCTGTTCCACTAGAACATTGCATAATGTGCATGCTAACCTTACCACCAAAAAATTGCTTTTTATCACTGTAGAAAGATGCAGATTCAAAGTTGTACCTTGTATCTGTTGAAGCTATACATGATTAATGTTATTTCTTGCCTACGCTATAGCTTTTCTAGTTTCAGTTTATCTTGGATTGCTATAAAATAGATTCAGCGTTTAACTGTAATGACTCAACTTTAATCATGTTTTTTCTTCCCCCAATTGCTCTGTCAAAGCTTGTGATTTTTGTCACTTCCCTTGAAAAAATTTCATTTTATAGGATTTTTATGTATTACATTTGACTGCAGGTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAA</genome_strand>
        <mrna_strand>CACGACAAATTCTCAAGATGGAGTGACTGATCTTTTCGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTCTGCTG.............................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCGTTGGTGCAGAAATTTCCACAATTGAAGGTCGTGATGGAGCATGTTACCACCATTGATGCTGTTAAGTTTGTTGAATCTTGCACTGAAG....................................................................................................................GATTTGTTGCAGCAACTGTCACCCCACAACATCTTGTTTTGAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCGCTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAGTGTTCTTGTGGATGTGCTGGTATTTACAATGCACCTGTAGCCTTGTCAGTATATGCGAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTCGACAAGCTTGAAGCATTTACTAGCTTCAATGGACCAGATTTTTATGGGCTTCCTAGGAACAACTCAAAGATTAAGTTGAGTAAGACGCCATGGAAGGTACCCGAATCCTTTTCTTATGCATCAGGAGATATTATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202102" ref_strand="+" ref_description="SGN-E202102 [cLEC-7-I1]">
      <seq>ttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49376" stop="43770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49076" g_stop="48912" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44413" g_stop="44253" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="443" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44111" g_stop="44070" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="485" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E202102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49076" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44253"/>
          <exon e_start="44111" e_stop="44070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAAT</genome_strand>
        <mrna_strand>TTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305095" ref_strand="+" ref_description="SGN-E305095 [cLEY-18-J3]">
      <seq>ctatggaaatcaaactatcaagagagagccaggtcgtatgtggggtgaagttgtaccctgctggtgccacgacaaattctcaagatggagtgactgatctttttgggaagtgtttaccagttctacaagaaatggttgagcataatatgcctttgctggttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaagatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaaaaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgttgccttatcagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="50540" stop="43972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50240" g_stop="50224" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50223" i_stop="49584" i_length="640">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.436" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49583" g_stop="49443" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="158" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365">
            <donor d_prob="0.252" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="324" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="441" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44413" g_stop="44272" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="583" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E305095" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50240" e_stop="50224"/>
          <exon e_start="49583" e_stop="49443"/>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGAAATCAAACTAGCAAGTAAGTCCAATGCACTTTTGATGCATTAAAAATATATTAGATGTTATTCTTCTATATTATGACTGCTTTAATGGTGCGTGTATGATATTCTTCTATCAGAGAGCATGCATGTATTTCAGGAAACAAAAATTAATTTCAGTGAATGATAATGGTTGTATTTAAGCATCAATAAGATCATGACAGAAAAGGCACCAGTAGAAAGCCAATTTGTGAAACTTAGAAGTAGAGTTGAACTTTGAGAGACATTGTAATTCTTTGTTAAATCTCAATTCCCAATTTGTTCTCAAGACATTAAAACTGAAGGCTAGATTCTTGGCTATGCCAACCTTTTTTTTGGTCCTTTTATTATGTCTATTTTCGTGTCAGATCATAATCCTTGAAATTTGAAGTTAGTATTACGAGCTTTTTGTCTTTTATAAAGTCAGGGTCTACTCTCCTGTGTGGAAATTTAAACATGTCAAAATTTGCAGCATTTAAGTTTAACTGATTGTGTATTGTCATCTGGGTGCAGTTTTCTCCAATGTGAATGGCTCATGTTCCTATTTTTCTTACCATGAAAGCATTTAAGAATCATCCTTTTTTCCTTTTTCTTTTGTTGTTTTATCTATTTTTGTCCACTATTTCTGATAAAATGAGACAGGAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTGGTAATTTGATGCTAAACTTGGTGCTAAGCTTTCTTCCTGTTCCACTAGAACATTGCATAATGTGCATGCTAACCTTACCACCAAAAAATTGCTTTTTATCACTGTAGAAAGATGCAGATTCAAAGTTGTACCTTGTATCTGTTGAAGCTATACATGATTAATGTTATTTCTTGCCTACGCTATAGCTTTTCTAGTTTCAGTTTATCTTGGATTGCTATAAAATAGATTCAGCGTTTAACTGTAATGACTCAACTTTAATCATGTTTTTTCTTCCCCCAATTGCTCTGTCAAAGCTTGTGATTTTTGTCACTTCCCTTGAAAAAATTTCATTTTATAGGATTTTTATGTATTACATTTGACTGCAGGTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATA</genome_strand>
        <mrna_strand>CTATGGAAATCAAACTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGAGAGAGCCAGGTCGTATGTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAA....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAAAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTTGCCTTATCAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305196" ref_strand="+" ref_description="SGN-E305196 [cLEY-18-N20]">
      <seq>ctatggaaatcaaactagcaagagagagccaggtcgtatttggggtgaagttgtaccctgctggtgccacgacaaattctcaagatggagtgactgatctttttgggaagtgtttaccagttctacaagaaatggttgagcataatatgcctttgctggttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="49893" stop="44035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49579" g_stop="49443" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="158" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365">
            <donor d_prob="0.252" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="324" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48795" g_stop="48679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="441" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44413" g_stop="44335" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="520" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E305196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49579" e_stop="49443"/>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48679"/>
          <exon e_start="44413" e_stop="44335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTGGTAATTTGATGCTAAACTTGGTGCTAAGCTTTCTTCCTGTTCCACTAGAACATTGCATAATGTGCATGCTAACCTTACCACCAAAAAATTGCTTTTTATCACTGTAGAAAGATGCAGATTCAAAGTTGTACCTTGTATCTGTTGAAGCTATACATGATTAATGTTATTTCTTGCCTACGCTATAGCTTTTCTAGTTTCAGTTTATCTTGGATTGCTATAAAATAGATTCAGCGTTTAACTGTAATGACTCAACTTTAATCATGTTTTTTCTTCCCCCAATTGCTCTGTCAAAGCTTGTGATTTTTGTCACTTCCCTTGAAAAAATTTCATTTTATAGGATTTTTATGTATTACATTTGACTGCAGGTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTCACTCGTGGCTGCAACCCTGCTTACTCAAAATCTATTCACACATGGTTACGTTTTGGGGAAATTATGAGGGGATCTCTCAGCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACG</genome_strand>
        <mrna_strand>GAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321412" ref_strand="+" ref_description="SGN-E321412 [cTOB-23-O11]">
      <seq>gtttaattcatttcttctttgttatgacagtaatccatacaacaaaatcaaaatgccatattccgaaaagattataggcttttagatttgatttaacgaaatataagcaaaggcagattagttttcacaaatagtgttttggactcacttcccacttacacaatctctttattccttattcctacatatctggccaagaaattgataagattcgtcgaatctgaaatgaaaacagggacaagaaagcttttaatcatgctaagtgggaagctgtccaaaaagataaaaatctggaggcctgggagtacggaatctgaaagcacacaatgatagcctcttaaacaaatggtcatggagattcacaaaaggtgagaatgcaaaacggagtaagtcatcgagaccaaatatggtatgcaacacctgtggataacaaagcttactagctcttgtatggtttctctgtcgggaaaagcatctggactttctttagacgaattcctaggaaacaacatctttcaagttgggaaatggcagnaaatcagctttttggaatggccgtacccctctcaagtgtgtatccactctggcagcccatcagaatgcgtaacagattattactcaaaaatggcttgaacatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="44813" stop="47392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45113" g_stop="45368" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45369" i_stop="46706" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46707" g_stop="47092" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="642" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E321412" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45113" e_stop="45368"/>
          <exon e_start="46707" e_stop="47092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATTCATTTCTTCTTTGTTATGACAGTAATCCATACAACAAAATCAAAATGCCATATTCCGAAAAGATTATAGGCTTTTAGATTTGATTTAACGAAATATAAGCAAAGGCAGATTAGTTTTCACAAATAGTGTTTTGGACTCACTTCCCACTTACACAATCTCTTTATTCCTTATTCCTACATATCTGGCCAAGAAATTGATAAGATTCGTCGAATCTGAAATGAAAACAGGGACAAGAAAGCTTTTAATCATGCTAAGTGCTGAGAGATCCCCTCATAATTTCCCCAAAACGTAACCATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCACGAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGCCGTTTTTGCTCACGGATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGTGCTAAGTGGGAAGCTGTCCAAAAAGATAAAAATCTGGAGGCCTGGGAGTACGGAATCTGAAAGCACACAATGATAGCCTCTTAAACAAATGGTCATGGAGATTCACAAAAGGTGAGAATGCAAAACGGAGTAAGTCATCGAGACCAAATATGGTATGCAACACCTGTGGATAACAAAGCTTACTAGCTCTTGTATGGTTTCTCTGTCGGGAAAAGCATCTGGACTTTCTTTAGACGAATTCCTAGGAAACAACATCTTTCAAGTTGGGAAATGGCAGAAAATCAGCTTTTTGGAATGGCCGTACCCCTCTCAAGTGTGTATCCACTCTGGCAGCCAATCAGAATGCGTAACAGATTATTACTCAAAAATGGCTTGAACATCATCT</genome_strand>
        <mrna_strand>GTTTAATTCATTTCTTCTTTGTTATGACAGTAATCCATACAACAAAATCAAAATGCCATATTCCGAAAAGATTATAGGCTTTTAGATTTGATTTAACGAAATATAAGCAAAGGCAGATTAGTTTTCACAAATAGTGTTTTGGACTCACTTCCCACTTACACAATCTCTTTATTCCTTATTCCTACATATCTGGCCAAGAAATTGATAAGATTCGTCGAATCTGAAATGAAAACAGGGACAAGAAAGCTTTTAATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAGTGGGAAGCTGTCCAAAAAGATAAAAATCTGGAGGCCTGGGAGTACGGAATCTGAAAGCACACAATGATAGCCTCTTAAACAAATGGTCATGGAGATTCACAAAAGGTGAGAATGCAAAACGGAGTAAGTCATCGAGACCAAATATGGTATGCAACACCTGTGGATAACAAAGCTTACTAGCTCTTGTATGGTTTCTCTGTCGGGAAAAGCATCTGGACTTTCTTTAGACGAATTCCTAGGAAACAACATCTTTCAAGTTGGGAAATGGCAGNAAATCAGCTTTTTGGAATGGCCGTACCCCTCTCAAGTGTGTATCCACTCTGGCAGCCCATCAGAATGCGTAACAGATTATTACTCAAAAATGGCTTGAACATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322264" ref_strand="+" ref_description="SGN-E322264 [cTOB-24-A1]">
      <seq>gcctccagttgcagctagccgcaaaatccatcgtctcttctttcaaagtgatttcacatataccagttgttagctttggacacaaaagatcgttaaaaatctacagtgcgaaaatggagctctcaatcacacaacctgatgattggcatcttcatctccgtgatggtgatgttcttaaggcagttgtctctcacagtgcacatcactttgggagggcaatagtcatgccaaatttgaagcctcctatcactaccactgctgctgctgtagcataccgggaggcgatattgaaatctttacctgctgatagtgatttcaaccctcttatgacactttatttgacagatacaaccagtcctatggaaatcaaactagcaagagagagccaggtcgtatttggggtgaagttgtaccctgctggtgccacgacaaattctcaagatggagtgactgatctttttgggaagtgtttaccagttctacaagaaatggttgagcataatatgcctttgctggttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="51617" stop="48459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51317" g_stop="51268" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51267" i_stop="50668" i_length="600">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.640" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50667" g_stop="50522" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="196" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50521" i_stop="50402" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50401" g_stop="50220" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="378" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50219" i_stop="49580" i_length="640">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49579" g_stop="49443" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="515" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365">
            <donor d_prob="0.252" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49077" g_stop="48912" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="681" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48795" g_stop="48759" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="718" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E322264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51317" e_stop="51268"/>
          <exon e_start="50667" e_stop="50522"/>
          <exon e_start="50401" e_stop="50220"/>
          <exon e_start="49579" e_stop="49443"/>
          <exon e_start="49077" e_stop="48912"/>
          <exon e_start="48795" e_stop="48759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCAGTTGCAGCTAGCCGCAAAATCCATCGTCTCTTCTTTCAAAGTGGTGCTTCTCTTTCTCTTTCTCTACTTTTTTTTCTTCAAAGCTCAAAGAAATTTTATTTACATTCAAAATGCTGGCTTCTAAAGGAACAACTTTCTCAGATTGTAGCGTAATGAGGACTTTATTCTCTCCCTGCAAAGTATGTAATAGAACACTCTTACATGTTTAGAATTCTTTATAAACTCTCTTCATTTCCTTGTTTTGACTCGAAAATGTTGTTGTGTGAGAAGGTATCATTTGCAGCGAACCCATGTAATTTGCCCTTTTTGCTTAAACTTTATATGTGGTTCTGGTTCTGGGGCATTTTTTAGAATTAATGAAAAGGTTACAAGGTGTTTGACACACTAGTGCGAGAGTATCTTATGGGGAAAAAAAATAATCCAAGGGTGAAAGAATTCTGCATTTTATCTCGGGACCTTATATCTCACGCCAAACGACTCCGAAATGTGCTACCTTTCATTTTCTGGTCCAGAGTAGTGCATAAGAAGTTTATGAACTGATCAACTCTATAAAGGAATCAGTACCTTTGATTTTCTGGCTATTCTAAATTTGACTTGAAAAATCAGACCTCTTTAATCATATCATATTGTTTTGGTTATCCAGATTTCACATATACCAGTTGTTAGCTTTGGACACAAAAGATCGTTAAAAATCTACAGTGCGAAAATGGAGCTCTCAATCACACAACCTGATGATTGGCATCTTCATCTCCGTGATGGTGATGTTCTTAAGGCAGTTGTCTCTCACAGGTTTCTAGTTTTAAATACTTCAGCTGATTGTGATTCAGTTTATACTTTATATTCCACTTTGTTAAATTCGGTTTCTTTATCTTGATTTTGACTTGTTCATTTTTGCATTATTTGATAAAGTGCACATCACTTTGGGAGGGCAATAGTCATGCCAAATTTGAAGCCTCCTATCACTACCACTGCTGCTGCTGTAGCATACCGGGAGGCGATATTGAAATCTTTACCTGCTGATAGTGATTTCAACCCTCTTATGACACTTTATTTGACAGATACAACCAGTCCTATGGAAATCAAACTAGCAAGTAAGTCCAATGCACTTTTGATGCATTAAAAATATATTAGATGTTATTCTTCTATATTATGACTGCTTTAATGGTGCGTGTATGATATTCTTCTATCAGAGAGCATGCATGTATTTCAGGAAACAAAAATTAATTTCAGTGAATGATAATGGTTGTATTTAAGCATCAATAAGATCATGACAGAAAAGGCACCAGTAGAAAGCCAATTTGTGAAACTTAGAAGTAGAGTTGAACTTTGAGAGACATTGTAATTCTTTGTTAAATCTCAATTCCCAATTTGTTCTCAAGACATTAAAACTGAAGGCTAGATTCTTGGCTATGCCAACCTTTTTTTTGGTCCTTTTATTATGTCTATTTTCGTGTCAGATCATAATCCTTGAAATTTGAAGTTAGTATTACGAGCTTTTTGTCTTTTATAAAGTCAGGGTCTACTCTCCTGTGTGGAAATTTAAACATGTCAAAATTTGCAGCATTTAAGTTTAACTGATTGTGTATTGTCATCTGGGTGCAGTTTTCTCCAATGTGAATGGCTCATGTTCCTATTTTTCTTACCATGAAAGCATTTAAGAATCATCCTTTTTTCCTTTTTCTTTTGTTGTTTTATCTATTTTTGTCCACTATTTCTGATAAAATGAGACAGGAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTGGTAATTTGATGCTAAACTTGGTGCTAAGCTTTCTTCCTGTTCCACTAGAACATTGCATAATGTGCATGCTAACCTTACCACCAAAAAATTGCTTTTTATCACTGTAGAAAGATGCAGATTCAAAGTTGTACCTTGTATCTGTTGAAGCTATACATGATTAATGTTATTTCTTGCCTACGCTATAGCTTTTCTAGTTTCAGTTTATCTTGGATTGCTATAAAATAGATTCAGCGTTTAACTGTAATGACTCAACTTTAATCATGTTTTTTCTTCCCCCAATTGCTCTGTCAAAGCTTGTGATTTTTGTCACTTCCCTTGAAAAAATTTCATTTTATAGGATTTTTATGTATTACATTTGACTGCAGGTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGT</genome_strand>
        <mrna_strand>GCCTCCAGTTGCAGCTAGCCGCAAAATCCATCGTCTCTTCTTTCAAAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACATATACCAGTTGTTAGCTTTGGACACAAAAGATCGTTAAAAATCTACAGTGCGAAAATGGAGCTCTCAATCACACAACCTGATGATTGGCATCTTCATCTCCGTGATGGTGATGTTCTTAAGGCAGTTGTCTCTCACAG........................................................................................................................TGCACATCACTTTGGGAGGGCAATAGTCATGCCAAATTTGAAGCCTCCTATCACTACCACTGCTGCTGCTGTAGCATACCGGGAGGCGATATTGAAATCTTTACCTGCTGATAGTGATTTCAACCCTCTTATGACACTTTATTTGACAGATACAACCAGTCCTATGGAAATCAAACTAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347799" ref_strand="+" ref_description="SGN-E347799 [cTOF-26-N19]">
      <seq>aaggaagtttctaattttgcccaaaatcggtagaaaaaaaaaagtagtagtatatatatagctgtcattgggagagttgtgagcacgcaataatactccctctaaagaagcactaaattttccctttttgcatattaaacgctctccatctaacattttgttcagttgtcaataattgactgggaaattgattcccgagatcggcaactggtgttcttcaatactcaattttcgtgcaactctgttaaaatgggttgcgttggatcctcacgtaccaaaggagatgaatctgtcaggaaaataagaaaaccaaagccatggagacacacagaaccaataacaagagctcagcttctaaaaatgcgtgaagaattctgggacactgcaccacactatgggggaaaaaaagagatctgggatgcgctacgtgctgctgccgaggcagaaataggccttgcacaaacaatcgtgaacagtgctgggataattgttcaaaccactgatctaacagtctgctatgatgagagaggtgccaagtatgacttgcctctatacgttttgagcgaaccaacaaatctgactggtgaaaactgagaaggcaatataatcaagtgttcatgcttcattgagactgtaaatgctgtaaattgctctcacaagtcatttctctcaacattcatttcgttttatgcattatggtcctgtttcacgacatcaagaatcgtctgtcgcagcagcaacatgcaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="52677" stop="59178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52977" g_stop="53262" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53263" i_stop="57251" i_length="3989">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57252" g_stop="57374" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="409" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57375" i_stop="58458" i_length="1084">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58459" g_stop="58578" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="529" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58579" i_stop="58655" i_length="77">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58656" g_stop="58878" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="751" r_length="222" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E347799" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52977" e_stop="53262"/>
          <exon e_start="57252" e_stop="57374"/>
          <exon e_start="58459" e_stop="58578"/>
          <exon e_start="58656" e_stop="58878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTTTCTAATTTTGCCCAAAATCGGTAGAAAAAAAAAAGTAGTAGTATATATATAGCTGTCATTGGGAGAGTTGTGAGCACGCAATAATACTCCCTCTAAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATGGTAATTTGTTTCAACACTTTTTATTGATACCCATTTGGTTACTTCGTGTTTCGTTTGTGTTTGAAGTTGATTGCTTGTTTTCGTGATGAAATTTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTTTCTGATGTATGAAGTGAGTTTCGCAGTGTTTTTTTGAAGTTGATGCTCTCGCTTTCTTGATGAAATTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTCCTTGATGTATGAAGTGAGTTTTCGCTTTTTTGAAGTTGATTGCTCTCGCTTTCTTGATAAAATTATTGGTTTCTTCAATTTTAAGTGATACCCATTTGGTTTCCTGATGTACGAAGTGAGTTTTCGCAGTGTTTTTTTTTTGAAGTTGATTGCTCTCGCTTTTTTGATTAAATTATTGTTTTCTTCAATATTTAATGATACCCATTTGGTTTACTGATGTATGAAGTCCGTGTTTGAAGTTGATTGCTCTCTTTCTTGGTGAAATTATTCTTTTTCTTTAACTTTTAGAGATACACATTTGGTTTTCCAGACAGAAAATGTGTCTTTGTGCGACTCCACTTTCTGTGAGTTCGAAGATTGCATTTGTTCTGGAAGTTGATTGCATTCTTGTTATTATTGGTAGAGTTGTTTGTTTTAGTAATTTTTGGAGATCTCAGTTGGTTATACTGGTATATTGCTATGTATGATCTTGCATTTCTTGGACTCTTTGATTGGTCCTCAAGTAAGTGATATTTGATAATAGATAATTAGTGATGAAATAGGTATTGGGTAGGTATTAGCTCTATTTATATAGCTGTAAGTTCCATTTTGTTGGATATTGTGTCTGTTTGATACTAATGGGTAGGTTGTAGTTGTGGGGATGATGATGTGTTGGTTATTGACTTAAAATATGAGTGTGACAATGAAGAATAGGTCGATAAACTATTGGGGTGAAGTCGTCATCCAATTTATTGAACTGTTCTTTTGTTCTTTCCTTTATATTTGATAAGAGACATCACTATCCTTTTTTCTTTAATAAAGAGAAACCACTGTTTCTTATCATTGGCATTAGTCATCTTGTCTTATTCATATTTCAACTTTGATGTTGTATCCAAAGAAGATTTAACTGAAAGACGTGCTAGATGCAAAAGAATTTGAATAAATAAAGTATATTATTTGGGAGTCGAGAAATACCCCCGAAACAATTAATTAGATATTTGGCAGAATTATTGACAAAGATGCAGAAATAACTCAACATATATGCACTGGAATATAGGTTGGCCAAGTGGCAGAGTACATTCGCCTACTATTTAAATTGATGTACTCATTGAAATTGAAAGGAGAATTATATTACCTAATGAAGAATCATGTGACGTTAAGTGTAAAATGTTAGGCAACTGGAAAGTAATGTTTAGTCCAGAGTCAATTTTATTTAAATAATATAAGATTTGTAATAATAATGACAGAGACTAGAATCAAGGAACTGAAGGGAAGGACTGAAAAACAACATTGTTTGGTAGTGTTGGAAAAAAGGCCATGTTTAATGAAGAATGTGTCTTAGATCAAGTCGGTGTTGACAATTTTAAAATTTTAGCTGGTAAAATGGTGATGGTAAAGCATAGTGGAGTTTTTGTCAAAAATCTGGAGTACTTTCATCATTAGTTTTTTTAGGGTTTGATCTTCAGTTCATAGTTATCGAAGTCCATGCATGCTAGTCGACTGTTTTGATTCTTTCCTCTGAAAGAGATCAACTCAAATAATCAAATCAGATAAAAGTTTGTCTTAATACACTGAATATGGAAATGCACTAGGAAGAGCTTTTTTCTCTATTGAACTTTGTATGGTGTACCTGTTTGTCGGAAAAGATCCTTTTTTCCGATGGTATTGAAAGGTGCACTGCTGGATTTTGATAAAATTGCTCATTTTATCAAAGGTAGTATTAATGAACATATGGTAAAGATTTAGTCTTTGGTTGTACGATTTGACTTTTGTTTGCTTTGCAATTCGACATATTTTCCAATTCACAACCTGTAAAGTTTTTCGCCGGTGTTGCTTCACTTCTTTACTAATATATCACGCAGGATTTTTGGTTTTGTTTGTGGACTTGTAATTTTGCTCTGTTCGTCTTCCTTGATAAGTTGTAATTATTGCTATGCTGACTTAAGCTTTTATTACAACTTCTTGGTATTTCGCATCACCTCATGGTTTTATATTTTGGTTTATATTTTGCTATAATTGATTTCTCATTACCTCCCTAGGCTTTTATTATGACCATGTGCTCTACTATTCTTTCATATTCAATGATCTACAAGTTTTTGTTGTTCCGGACTAATTTCCCCGTTATTTAATGATCCTTCTATTCTTTTTTCTTTTCCCCTCATTAAAGACATGGTTCTTACTATTGCTGCTGGTGCCCTTCATCTCGTGCAGAATTATGTGCTTTACAGACTGTTATATTGAAGTGCTGATGATTGTTTAGTGCTACTGTTAAAATAGATCCATGTAGCTTGTATTTTATCTAATTGGATGTTGTATAATTTGTCTCTTCTCAGTGGCATTCTAGTAGAGTTATATTCCTAAAAAGATAGTCTAGATCAGCACTAGATCACTAGTGATGTTACTATCTACTTTTTAGAGGCATCTGTCCTCAGATATTTGTCTTTGTCCTTTGCATGTTGGCTAATTTAATTTAAAGCATGGGAAAATAGTGGTCTACGTCCTGAAATGTAGTAAGGAACTTTGGAAAGGAAAAGAGATGCCAAGGCGTTTTATTTATAAAGTGATGATTATGATTTTTAAAGGAGTAGCAGTGCATGCCACTATTAACAAACTAAGTCTGATTAAACAATCTAAAAATGTGGGACGAACCACCTTACACCCAAAAGCAAATTCTAGTGCCAATTTATGCTTGCCAATATAACTCATTTTTGGTGGCTGTTAGTGAGCATAATGATTTGGGTCCACCTTACACCCAATAAGGGGGTTCGATGAATTTAGAATTCTAGATACTTTGCGATATATATGCGATGGATAGTGTTTGATACTCCAGCTATTGCTACTGTGACTGCTCTGTGGTGTTGCACTCTAGAATATTTGACTTTTATCCTTTCCCCTTGTTACATTGTAGATAGAACTCTAATTATTTAGTTTCATCATCGAAGATACAAAAAACACAAAACCTTACCTTTTTGTCTTCCCCTACTTTGGACAAAAACAAGTTAAAGCAACACAGTAGGCTTTTTCTTTTTTTCCCGTTCAATGTCCTTCCTTTGAAGAATTCTCCTCCAAACAGCTAGCTTGGACACATCATCTTGCAGAAATGGTGTCTATAAATCACATTCATTATATGAACTGAGTAGTGTGGAAGTGGCTATTGTTTGTTTCCTTGCTTTTGTCAGGAAATTTACCTTGGGTCATCTAGACTACTCTATGCTGCTGTAAGTTCCTCTATTATCATCGTACACCTTCACTCAACTTCTTGACCCATAGAAGTCAGTGGGTGACTTATTCTTCCTGAGATCCATTCCCAAAAAACATGTAATTGTTTTCTTTTCTTAATTCAATCTGAACTTGTCTTTTGTGTCATTATCTGCTCTTAGAATAACACTCTACGGCTCTAGTGTCTGAGTAGGCTGATGTGGAGCAGAGAGCTTGTTATTAGGAGGATCATCCATATTTAGAGAAATAAAGAACAAAATGAATTGAAAATTTATAATAGAGGGTAGATTCTGGAGCCAAGGATTTTATTTCTGGTATTGGATCAGATAATTTGTTCTAACAGAAGTTCAAAGCTTCAAGGATGGATGTTTGATTTCCCATAACCATGTGAAAAATCTTTTTATCTTTTAAGAGTTGTTTCTCGTTCACCTAGTAGAGGTTTCAACATTAAATCATTATGCTAATACTTGAATGATGCTCATATATTAGATATATGTTTCAATTATATAAGTATTATACTTCACCAACATCATATCTTGCTCCTTCATTTGCAGAATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAGGTAAATCCCTTGATAACTTCTATTAGCTTCTGCAAGTTTCTGGAACCACTGGTTCAATAGAGCTGGATGTGTGATCAGGTTGTACTATGGGCCTCTGCATTCTTATTTGAGTAACCAGTTAGTGTGGGCCAATTGTTAACTCTAGAGTACACATGTGATGATGTCTGACAATCTATCTGGGAGCTTGGGCAGAGTGGATTGACAGTATAATGATGTGTAGGAAGTAGGAACTGCTCTAGTGTGGATCAAAAGAATCGTTCTTGATGATTAGTTGCTCTACTTTAGGAGGGTTTATGTTATGCATTCAAGTTTTCTCATAACGATCTGGCTCCAGTAGTTTGTAACTTGGATATCTCTTTCACAAAAAGAAGTGACCTTGAATTTTTGAAAATCAAGTGGAGCGTGATATCTTTTAACATCCATGCTACATCTAATTTTAAGCTGTGTGCCCTTTTTTTCGGCTGTTCTTAGATATCATGATAATTTCAGAAAGTAAATTCCCAATTTGCTCCTGAGCAATAACAACCTTAATGATCCTTGAAAATGTTTCGGTGCTATCAGTTTGGCAAAGTTGCTGCAGGAAGAAACATGTCAATCTCCAGATCTGTTTTGCCTTTCCATATTGTTGGAAAGAAAGCTGCATTAGTGTCTTTTAAATAGTTCATTAAAACAAGGCACATTAGTTGAGTGAATAAGTAATTTTAACTTCTAATTAAGTGGATAAGTAACTTTCTTTTTTAAAAAAAATGGGAAGCTAATGTCAACTTTCAAAAGAACCCTCTCTTTGCAGCAATGTCAAGGAGCTTGTGTCGGGAAAGCTCTCTTGTAAATCTCACTGTTAATTAGTTTTCAGATCTTCATAGTTGAGATACCATTCAGTGCGTAGAACCTCATATTTTCACGTCGTGAATAATAGGACATCAGACATATGATTTCTTTTTCTGGTGGTTATTGTTAAAATTCAGAGATTGAAATGTATTAACTGATGGTCAGGTAATAGTATACTTGTAGTAGGGAAGGTCCATACTCCAACAGTTTAGTATATGAAAATCTTTTTTCTTACAACATATCACTCCATTTTCAGAGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAGGTTTGTAGTACACGTCGCTTAACACCTTCAACTTCCATTCCTGAGAATCTTAGTTAATGTTGATTCTTCTAATGCAGGTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGCTTCATTGAGACTGTAAATGCTGTAAATTGCTCTCACAAGTCATTTCTCTCAAACATTCATTTCGTTTTATGCATTATGGTCCTGTTTCACGACATCAAGAATCGTCTGTCGCAGCAGCAACATGCACCATG</genome_strand>
        <mrna_strand>AAGGAAGTTTCTAATTTTGCCCAAAATCGGTAGAAAAAAAAAAGTAGTAGTATATATATAGCTGTCATTGGGAGAGTTGTGAGCACGCAATAATACTCCCTCTAAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAG.............................................................................GTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGCTTCATTGAGACTGTAAATGCTGTAAATTGCTCTCACAAGTCATTTCTCTC-AACATTCATTTCGTTTTATGCATTATGGTCCTGTTTCACGACATCAAGAATCGTCTGTCGCAGCAGCAACATGCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320676" ref_strand="+" ref_description="SGN-E320676 [cTOB-27-E10]">
      <seq>aagtttctaattttgcccaaaatcggtagaaaaaaaaaagtagtagtatatatatagctgtcattgggagagttgtgagcacgcaataatactccctctaaagaagcactaaattttccctttttgcatattaaacgctctccatctaacattttgttcagttgtcaataattgactgggaaattgattcccgagatcggcaactggtgttcttcaatactcaattttcgtgcaactctgttaaaatgggttgcgttgnatcctcacgtaccaaaggagatgaatctgtcaggaaaataagaaaaccaaagccatggagacacacagaaccaataacaagagctcagcttcttaaaatgcgtgaagaattctgggacactgcaccacactatgggggaaaaaaagagatctgggatgcgctacgtgctgctgccgaggcagaaataggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="52681" stop="58806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52981" g_stop="53262" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53263" i_stop="57251" i_length="3989">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57252" g_stop="57374" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="405" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57375" i_stop="58458" i_length="1084">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58459" g_stop="58506" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="453" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E320676" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52981" e_stop="53262"/>
          <exon e_start="57252" e_stop="57374"/>
          <exon e_start="58459" e_stop="58506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTAATTTTGCCCAAAATCGGTAGAAAAAAAAAAGTAGTAGTATATATATAGCTGTCATTGGGAGAGTTGTGAGCACGCAATAATACTCCCTCTAAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATGGTAATTTGTTTCAACACTTTTTATTGATACCCATTTGGTTACTTCGTGTTTCGTTTGTGTTTGAAGTTGATTGCTTGTTTTCGTGATGAAATTTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTTTCTGATGTATGAAGTGAGTTTCGCAGTGTTTTTTTGAAGTTGATGCTCTCGCTTTCTTGATGAAATTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTCCTTGATGTATGAAGTGAGTTTTCGCTTTTTTGAAGTTGATTGCTCTCGCTTTCTTGATAAAATTATTGGTTTCTTCAATTTTAAGTGATACCCATTTGGTTTCCTGATGTACGAAGTGAGTTTTCGCAGTGTTTTTTTTTTGAAGTTGATTGCTCTCGCTTTTTTGATTAAATTATTGTTTTCTTCAATATTTAATGATACCCATTTGGTTTACTGATGTATGAAGTCCGTGTTTGAAGTTGATTGCTCTCTTTCTTGGTGAAATTATTCTTTTTCTTTAACTTTTAGAGATACACATTTGGTTTTCCAGACAGAAAATGTGTCTTTGTGCGACTCCACTTTCTGTGAGTTCGAAGATTGCATTTGTTCTGGAAGTTGATTGCATTCTTGTTATTATTGGTAGAGTTGTTTGTTTTAGTAATTTTTGGAGATCTCAGTTGGTTATACTGGTATATTGCTATGTATGATCTTGCATTTCTTGGACTCTTTGATTGGTCCTCAAGTAAGTGATATTTGATAATAGATAATTAGTGATGAAATAGGTATTGGGTAGGTATTAGCTCTATTTATATAGCTGTAAGTTCCATTTTGTTGGATATTGTGTCTGTTTGATACTAATGGGTAGGTTGTAGTTGTGGGGATGATGATGTGTTGGTTATTGACTTAAAATATGAGTGTGACAATGAAGAATAGGTCGATAAACTATTGGGGTGAAGTCGTCATCCAATTTATTGAACTGTTCTTTTGTTCTTTCCTTTATATTTGATAAGAGACATCACTATCCTTTTTTCTTTAATAAAGAGAAACCACTGTTTCTTATCATTGGCATTAGTCATCTTGTCTTATTCATATTTCAACTTTGATGTTGTATCCAAAGAAGATTTAACTGAAAGACGTGCTAGATGCAAAAGAATTTGAATAAATAAAGTATATTATTTGGGAGTCGAGAAATACCCCCGAAACAATTAATTAGATATTTGGCAGAATTATTGACAAAGATGCAGAAATAACTCAACATATATGCACTGGAATATAGGTTGGCCAAGTGGCAGAGTACATTCGCCTACTATTTAAATTGATGTACTCATTGAAATTGAAAGGAGAATTATATTACCTAATGAAGAATCATGTGACGTTAAGTGTAAAATGTTAGGCAACTGGAAAGTAATGTTTAGTCCAGAGTCAATTTTATTTAAATAATATAAGATTTGTAATAATAATGACAGAGACTAGAATCAAGGAACTGAAGGGAAGGACTGAAAAACAACATTGTTTGGTAGTGTTGGAAAAAAGGCCATGTTTAATGAAGAATGTGTCTTAGATCAAGTCGGTGTTGACAATTTTAAAATTTTAGCTGGTAAAATGGTGATGGTAAAGCATAGTGGAGTTTTTGTCAAAAATCTGGAGTACTTTCATCATTAGTTTTTTTAGGGTTTGATCTTCAGTTCATAGTTATCGAAGTCCATGCATGCTAGTCGACTGTTTTGATTCTTTCCTCTGAAAGAGATCAACTCAAATAATCAAATCAGATAAAAGTTTGTCTTAATACACTGAATATGGAAATGCACTAGGAAGAGCTTTTTTCTCTATTGAACTTTGTATGGTGTACCTGTTTGTCGGAAAAGATCCTTTTTTCCGATGGTATTGAAAGGTGCACTGCTGGATTTTGATAAAATTGCTCATTTTATCAAAGGTAGTATTAATGAACATATGGTAAAGATTTAGTCTTTGGTTGTACGATTTGACTTTTGTTTGCTTTGCAATTCGACATATTTTCCAATTCACAACCTGTAAAGTTTTTCGCCGGTGTTGCTTCACTTCTTTACTAATATATCACGCAGGATTTTTGGTTTTGTTTGTGGACTTGTAATTTTGCTCTGTTCGTCTTCCTTGATAAGTTGTAATTATTGCTATGCTGACTTAAGCTTTTATTACAACTTCTTGGTATTTCGCATCACCTCATGGTTTTATATTTTGGTTTATATTTTGCTATAATTGATTTCTCATTACCTCCCTAGGCTTTTATTATGACCATGTGCTCTACTATTCTTTCATATTCAATGATCTACAAGTTTTTGTTGTTCCGGACTAATTTCCCCGTTATTTAATGATCCTTCTATTCTTTTTTCTTTTCCCCTCATTAAAGACATGGTTCTTACTATTGCTGCTGGTGCCCTTCATCTCGTGCAGAATTATGTGCTTTACAGACTGTTATATTGAAGTGCTGATGATTGTTTAGTGCTACTGTTAAAATAGATCCATGTAGCTTGTATTTTATCTAATTGGATGTTGTATAATTTGTCTCTTCTCAGTGGCATTCTAGTAGAGTTATATTCCTAAAAAGATAGTCTAGATCAGCACTAGATCACTAGTGATGTTACTATCTACTTTTTAGAGGCATCTGTCCTCAGATATTTGTCTTTGTCCTTTGCATGTTGGCTAATTTAATTTAAAGCATGGGAAAATAGTGGTCTACGTCCTGAAATGTAGTAAGGAACTTTGGAAAGGAAAAGAGATGCCAAGGCGTTTTATTTATAAAGTGATGATTATGATTTTTAAAGGAGTAGCAGTGCATGCCACTATTAACAAACTAAGTCTGATTAAACAATCTAAAAATGTGGGACGAACCACCTTACACCCAAAAGCAAATTCTAGTGCCAATTTATGCTTGCCAATATAACTCATTTTTGGTGGCTGTTAGTGAGCATAATGATTTGGGTCCACCTTACACCCAATAAGGGGGTTCGATGAATTTAGAATTCTAGATACTTTGCGATATATATGCGATGGATAGTGTTTGATACTCCAGCTATTGCTACTGTGACTGCTCTGTGGTGTTGCACTCTAGAATATTTGACTTTTATCCTTTCCCCTTGTTACATTGTAGATAGAACTCTAATTATTTAGTTTCATCATCGAAGATACAAAAAACACAAAACCTTACCTTTTTGTCTTCCCCTACTTTGGACAAAAACAAGTTAAAGCAACACAGTAGGCTTTTTCTTTTTTTCCCGTTCAATGTCCTTCCTTTGAAGAATTCTCCTCCAAACAGCTAGCTTGGACACATCATCTTGCAGAAATGGTGTCTATAAATCACATTCATTATATGAACTGAGTAGTGTGGAAGTGGCTATTGTTTGTTTCCTTGCTTTTGTCAGGAAATTTACCTTGGGTCATCTAGACTACTCTATGCTGCTGTAAGTTCCTCTATTATCATCGTACACCTTCACTCAACTTCTTGACCCATAGAAGTCAGTGGGTGACTTATTCTTCCTGAGATCCATTCCCAAAAAACATGTAATTGTTTTCTTTTCTTAATTCAATCTGAACTTGTCTTTTGTGTCATTATCTGCTCTTAGAATAACACTCTACGGCTCTAGTGTCTGAGTAGGCTGATGTGGAGCAGAGAGCTTGTTATTAGGAGGATCATCCATATTTAGAGAAATAAAGAACAAAATGAATTGAAAATTTATAATAGAGGGTAGATTCTGGAGCCAAGGATTTTATTTCTGGTATTGGATCAGATAATTTGTTCTAACAGAAGTTCAAAGCTTCAAGGATGGATGTTTGATTTCCCATAACCATGTGAAAAATCTTTTTATCTTTTAAGAGTTGTTTCTCGTTCACCTAGTAGAGGTTTCAACATTAAATCATTATGCTAATACTTGAATGATGCTCATATATTAGATATATGTTTCAATTATATAAGTATTATACTTCACCAACATCATATCTTGCTCCTTCATTTGCAGAATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAGGTAAATCCCTTGATAACTTCTATTAGCTTCTGCAAGTTTCTGGAACCACTGGTTCAATAGAGCTGGATGTGTGATCAGGTTGTACTATGGGCCTCTGCATTCTTATTTGAGTAACCAGTTAGTGTGGGCCAATTGTTAACTCTAGAGTACACATGTGATGATGTCTGACAATCTATCTGGGAGCTTGGGCAGAGTGGATTGACAGTATAATGATGTGTAGGAAGTAGGAACTGCTCTAGTGTGGATCAAAAGAATCGTTCTTGATGATTAGTTGCTCTACTTTAGGAGGGTTTATGTTATGCATTCAAGTTTTCTCATAACGATCTGGCTCCAGTAGTTTGTAACTTGGATATCTCTTTCACAAAAAGAAGTGACCTTGAATTTTTGAAAATCAAGTGGAGCGTGATATCTTTTAACATCCATGCTACATCTAATTTTAAGCTGTGTGCCCTTTTTTTCGGCTGTTCTTAGATATCATGATAATTTCAGAAAGTAAATTCCCAATTTGCTCCTGAGCAATAACAACCTTAATGATCCTTGAAAATGTTTCGGTGCTATCAGTTTGGCAAAGTTGCTGCAGGAAGAAACATGTCAATCTCCAGATCTGTTTTGCCTTTCCATATTGTTGGAAAGAAAGCTGCATTAGTGTCTTTTAAATAGTTCATTAAAACAAGGCACATTAGTTGAGTGAATAAGTAATTTTAACTTCTAATTAAGTGGATAAGTAACTTTCTTTTTTAAAAAAAATGGGAAGCTAATGTCAACTTTCAAAAGAACCCTCTCTTTGCAGCAATGTCAAGGAGCTTGTGTCGGGAAAGCTCTCTTGTAAATCTCACTGTTAATTAGTTTTCAGATCTTCATAGTTGAGATACCATTCAGTGCGTAGAACCTCATATTTTCACGTCGTGAATAATAGGACATCAGACATATGATTTCTTTTTCTGGTGGTTATTGTTAAAATTCAGAGATTGAAATGTATTAACTGATGGTCAGGTAATAGTATACTTGTAGTAGGGAAGGTCCATACTCCAACAGTTTAGTATATGAAAATCTTTTTTCTTACAACATATCACTCCATTTTCAGAGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTG</genome_strand>
        <mrna_strand>AAGTTTCTAATTTTGCCCAAAATCGGTAGAAAAAAAAAAGTAGTAGTATATATATAGCTGTCATTGGGAGAGTTGTGAGCACGCAATAATACTCCCTCTAAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGNATCCTCACGTACCAAAGGAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTTAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308726" ref_strand="+" ref_description="SGN-E308726 [cLEZ-11-I20]">
      <seq>agaagcactaaattttccctttttgcatattaaacgctctccatctaacattttgttcagttgtcaataattgactgggaaattgattcccgagatcggcaactggtgttcttcaatactcaattttcgtgcaactctgttaaaatgggttgcgttggatcctcacgtaccaaaggagatgaatctgtcaggaaaataagaaaaccaaagccatggagacacacagaaccaataacaagagctcagcttctaaaaatgcgtgaagaattctgggacactgcaccacactatgggggaaaaaaagagatctgggatgcgctacgtgctgctgccgaggcagaaataggccttgcacaaacaatcgtgaacagtgctgggataattgttcaaaccactgatctaacagtctgctatgatgagagaggtgccaagtatgacttgcctctatacgttttgagcgaaccaacaaatctgactggtgaaaactgagaaggcaatataatcaagtgttcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="52782" stop="59047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53082" g_stop="53262" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53263" i_stop="57251" i_length="3989">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57252" g_stop="57374" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="304" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57375" i_stop="58458" i_length="1084">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58459" g_stop="58578" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="424" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58579" i_stop="58655" i_length="77">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58656" g_stop="58747" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="516" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E308726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53082" e_stop="53262"/>
          <exon e_start="57252" e_stop="57374"/>
          <exon e_start="58459" e_stop="58578"/>
          <exon e_start="58656" e_stop="58747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATGGTAATTTGTTTCAACACTTTTTATTGATACCCATTTGGTTACTTCGTGTTTCGTTTGTGTTTGAAGTTGATTGCTTGTTTTCGTGATGAAATTTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTTTCTGATGTATGAAGTGAGTTTCGCAGTGTTTTTTTGAAGTTGATGCTCTCGCTTTCTTGATGAAATTATTGTTTTCTTCAATTTTTAGTGATACCCATTTGGTTCCTTGATGTATGAAGTGAGTTTTCGCTTTTTTGAAGTTGATTGCTCTCGCTTTCTTGATAAAATTATTGGTTTCTTCAATTTTAAGTGATACCCATTTGGTTTCCTGATGTACGAAGTGAGTTTTCGCAGTGTTTTTTTTTTGAAGTTGATTGCTCTCGCTTTTTTGATTAAATTATTGTTTTCTTCAATATTTAATGATACCCATTTGGTTTACTGATGTATGAAGTCCGTGTTTGAAGTTGATTGCTCTCTTTCTTGGTGAAATTATTCTTTTTCTTTAACTTTTAGAGATACACATTTGGTTTTCCAGACAGAAAATGTGTCTTTGTGCGACTCCACTTTCTGTGAGTTCGAAGATTGCATTTGTTCTGGAAGTTGATTGCATTCTTGTTATTATTGGTAGAGTTGTTTGTTTTAGTAATTTTTGGAGATCTCAGTTGGTTATACTGGTATATTGCTATGTATGATCTTGCATTTCTTGGACTCTTTGATTGGTCCTCAAGTAAGTGATATTTGATAATAGATAATTAGTGATGAAATAGGTATTGGGTAGGTATTAGCTCTATTTATATAGCTGTAAGTTCCATTTTGTTGGATATTGTGTCTGTTTGATACTAATGGGTAGGTTGTAGTTGTGGGGATGATGATGTGTTGGTTATTGACTTAAAATATGAGTGTGACAATGAAGAATAGGTCGATAAACTATTGGGGTGAAGTCGTCATCCAATTTATTGAACTGTTCTTTTGTTCTTTCCTTTATATTTGATAAGAGACATCACTATCCTTTTTTCTTTAATAAAGAGAAACCACTGTTTCTTATCATTGGCATTAGTCATCTTGTCTTATTCATATTTCAACTTTGATGTTGTATCCAAAGAAGATTTAACTGAAAGACGTGCTAGATGCAAAAGAATTTGAATAAATAAAGTATATTATTTGGGAGTCGAGAAATACCCCCGAAACAATTAATTAGATATTTGGCAGAATTATTGACAAAGATGCAGAAATAACTCAACATATATGCACTGGAATATAGGTTGGCCAAGTGGCAGAGTACATTCGCCTACTATTTAAATTGATGTACTCATTGAAATTGAAAGGAGAATTATATTACCTAATGAAGAATCATGTGACGTTAAGTGTAAAATGTTAGGCAACTGGAAAGTAATGTTTAGTCCAGAGTCAATTTTATTTAAATAATATAAGATTTGTAATAATAATGACAGAGACTAGAATCAAGGAACTGAAGGGAAGGACTGAAAAACAACATTGTTTGGTAGTGTTGGAAAAAAGGCCATGTTTAATGAAGAATGTGTCTTAGATCAAGTCGGTGTTGACAATTTTAAAATTTTAGCTGGTAAAATGGTGATGGTAAAGCATAGTGGAGTTTTTGTCAAAAATCTGGAGTACTTTCATCATTAGTTTTTTTAGGGTTTGATCTTCAGTTCATAGTTATCGAAGTCCATGCATGCTAGTCGACTGTTTTGATTCTTTCCTCTGAAAGAGATCAACTCAAATAATCAAATCAGATAAAAGTTTGTCTTAATACACTGAATATGGAAATGCACTAGGAAGAGCTTTTTTCTCTATTGAACTTTGTATGGTGTACCTGTTTGTCGGAAAAGATCCTTTTTTCCGATGGTATTGAAAGGTGCACTGCTGGATTTTGATAAAATTGCTCATTTTATCAAAGGTAGTATTAATGAACATATGGTAAAGATTTAGTCTTTGGTTGTACGATTTGACTTTTGTTTGCTTTGCAATTCGACATATTTTCCAATTCACAACCTGTAAAGTTTTTCGCCGGTGTTGCTTCACTTCTTTACTAATATATCACGCAGGATTTTTGGTTTTGTTTGTGGACTTGTAATTTTGCTCTGTTCGTCTTCCTTGATAAGTTGTAATTATTGCTATGCTGACTTAAGCTTTTATTACAACTTCTTGGTATTTCGCATCACCTCATGGTTTTATATTTTGGTTTATATTTTGCTATAATTGATTTCTCATTACCTCCCTAGGCTTTTATTATGACCATGTGCTCTACTATTCTTTCATATTCAATGATCTACAAGTTTTTGTTGTTCCGGACTAATTTCCCCGTTATTTAATGATCCTTCTATTCTTTTTTCTTTTCCCCTCATTAAAGACATGGTTCTTACTATTGCTGCTGGTGCCCTTCATCTCGTGCAGAATTATGTGCTTTACAGACTGTTATATTGAAGTGCTGATGATTGTTTAGTGCTACTGTTAAAATAGATCCATGTAGCTTGTATTTTATCTAATTGGATGTTGTATAATTTGTCTCTTCTCAGTGGCATTCTAGTAGAGTTATATTCCTAAAAAGATAGTCTAGATCAGCACTAGATCACTAGTGATGTTACTATCTACTTTTTAGAGGCATCTGTCCTCAGATATTTGTCTTTGTCCTTTGCATGTTGGCTAATTTAATTTAAAGCATGGGAAAATAGTGGTCTACGTCCTGAAATGTAGTAAGGAACTTTGGAAAGGAAAAGAGATGCCAAGGCGTTTTATTTATAAAGTGATGATTATGATTTTTAAAGGAGTAGCAGTGCATGCCACTATTAACAAACTAAGTCTGATTAAACAATCTAAAAATGTGGGACGAACCACCTTACACCCAAAAGCAAATTCTAGTGCCAATTTATGCTTGCCAATATAACTCATTTTTGGTGGCTGTTAGTGAGCATAATGATTTGGGTCCACCTTACACCCAATAAGGGGGTTCGATGAATTTAGAATTCTAGATACTTTGCGATATATATGCGATGGATAGTGTTTGATACTCCAGCTATTGCTACTGTGACTGCTCTGTGGTGTTGCACTCTAGAATATTTGACTTTTATCCTTTCCCCTTGTTACATTGTAGATAGAACTCTAATTATTTAGTTTCATCATCGAAGATACAAAAAACACAAAACCTTACCTTTTTGTCTTCCCCTACTTTGGACAAAAACAAGTTAAAGCAACACAGTAGGCTTTTTCTTTTTTTCCCGTTCAATGTCCTTCCTTTGAAGAATTCTCCTCCAAACAGCTAGCTTGGACACATCATCTTGCAGAAATGGTGTCTATAAATCACATTCATTATATGAACTGAGTAGTGTGGAAGTGGCTATTGTTTGTTTCCTTGCTTTTGTCAGGAAATTTACCTTGGGTCATCTAGACTACTCTATGCTGCTGTAAGTTCCTCTATTATCATCGTACACCTTCACTCAACTTCTTGACCCATAGAAGTCAGTGGGTGACTTATTCTTCCTGAGATCCATTCCCAAAAAACATGTAATTGTTTTCTTTTCTTAATTCAATCTGAACTTGTCTTTTGTGTCATTATCTGCTCTTAGAATAACACTCTACGGCTCTAGTGTCTGAGTAGGCTGATGTGGAGCAGAGAGCTTGTTATTAGGAGGATCATCCATATTTAGAGAAATAAAGAACAAAATGAATTGAAAATTTATAATAGAGGGTAGATTCTGGAGCCAAGGATTTTATTTCTGGTATTGGATCAGATAATTTGTTCTAACAGAAGTTCAAAGCTTCAAGGATGGATGTTTGATTTCCCATAACCATGTGAAAAATCTTTTTATCTTTTAAGAGTTGTTTCTCGTTCACCTAGTAGAGGTTTCAACATTAAATCATTATGCTAATACTTGAATGATGCTCATATATTAGATATATGTTTCAATTATATAAGTATTATACTTCACCAACATCATATCTTGCTCCTTCATTTGCAGAATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAGGTAAATCCCTTGATAACTTCTATTAGCTTCTGCAAGTTTCTGGAACCACTGGTTCAATAGAGCTGGATGTGTGATCAGGTTGTACTATGGGCCTCTGCATTCTTATTTGAGTAACCAGTTAGTGTGGGCCAATTGTTAACTCTAGAGTACACATGTGATGATGTCTGACAATCTATCTGGGAGCTTGGGCAGAGTGGATTGACAGTATAATGATGTGTAGGAAGTAGGAACTGCTCTAGTGTGGATCAAAAGAATCGTTCTTGATGATTAGTTGCTCTACTTTAGGAGGGTTTATGTTATGCATTCAAGTTTTCTCATAACGATCTGGCTCCAGTAGTTTGTAACTTGGATATCTCTTTCACAAAAAGAAGTGACCTTGAATTTTTGAAAATCAAGTGGAGCGTGATATCTTTTAACATCCATGCTACATCTAATTTTAAGCTGTGTGCCCTTTTTTTCGGCTGTTCTTAGATATCATGATAATTTCAGAAAGTAAATTCCCAATTTGCTCCTGAGCAATAACAACCTTAATGATCCTTGAAAATGTTTCGGTGCTATCAGTTTGGCAAAGTTGCTGCAGGAAGAAACATGTCAATCTCCAGATCTGTTTTGCCTTTCCATATTGTTGGAAAGAAAGCTGCATTAGTGTCTTTTAAATAGTTCATTAAAACAAGGCACATTAGTTGAGTGAATAAGTAATTTTAACTTCTAATTAAGTGGATAAGTAACTTTCTTTTTTAAAAAAAATGGGAAGCTAATGTCAACTTTCAAAAGAACCCTCTCTTTGCAGCAATGTCAAGGAGCTTGTGTCGGGAAAGCTCTCTTGTAAATCTCACTGTTAATTAGTTTTCAGATCTTCATAGTTGAGATACCATTCAGTGCGTAGAACCTCATATTTTCACGTCGTGAATAATAGGACATCAGACATATGATTTCTTTTTCTGGTGGTTATTGTTAAAATTCAGAGATTGAAATGTATTAACTGATGGTCAGGTAATAGTATACTTGTAGTAGGGAAGGTCCATACTCCAACAGTTTAGTATATGAAAATCTTTTTTCTTACAACATATCACTCCATTTTCAGAGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAGGTTTGTAGTACACGTCGCTTAACACCTTCAACTTCCATTCCTGAGAATCTTAGTTAATGTTGATTCTTCTAATGCAGGTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGC</genome_strand>
        <mrna_strand>AGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAG.............................................................................GTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208511" ref_strand="+" ref_description="SGN-E208511 [cLEC-39-G12]">
      <seq>ttgggtcccccgtgacaatagaaatcagatgtgaatccgggaaagatggcagggctggaccaattgtgttgtcagcacctcatggtgtatctcatataggtacaaatcctggcattcatggtaatggggtgagaatggcaggtcctgatgaaatcagcagggcacaagtgaatgatagcgaaggtttagcatttagaaagctcgactcgagaggaataggtggtagcgagatagttgaagaggaagcttctccaagagaatcaaaacacaatgatcagatcgacaacaatacacaatttgataggcggaatttagaaagggattttccgggagggataatgtcaattgccaaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="75961" stop="76918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76261" g_stop="76618" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E208511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76261" e_stop="76618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCCCCCGTGACAATAGAAATCAGATGTGAATCCGGGAAAGATGGCAGGGCTGGACCAATTGTGTTGTCAGCACCTCATGGTGTATCTCATATAGGTACAAATCCTGGCATTCATGGTAATGGGGTGAGAATGGCAGGTCCTGATGAAATCAGCAGGGCACAAGTGAATGATAGCGAAGGTTTAGCATTTAGAAAGCTCGACTCGAGAGGAATAGGTGGTAGCGAGATAGTTGAAGAGGAAGCTTCTCCAAGAGAATCAAAACACAATGATCAGATCGACAACAATACACAATTTGATAGGCGGAATTTAGAAAGGGATTTTCCGGGAGGGATAATGTCAATTGCCAAAAATTC</genome_strand>
        <mrna_strand>TTGGGTCCCCCGTGACAATAGAAATCAGATGTGAATCCGGGAAAGATGGCAGGGCTGGACCAATTGTGTTGTCAGCACCTCATGGTGTATCTCATATAGGTACAAATCCTGGCATTCATGGTAATGGGGTGAGAATGGCAGGTCCTGATGAAATCAGCAGGGCACAAGTGAATGATAGCGAAGGTTTAGCATTTAGAAAGCTCGACTCGAGAGGAATAGGTGGTAGCGAGATAGTTGAAGAGGAAGCTTCTCCAAGAGAATCAAAACACAATGATCAGATCGACAACAATACACAATTTGATAGGCGGAATTTAGAAAGGGATTTTCCGGGAGGGATAATGTCAATTGCCAAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243188" ref_strand="+" ref_description="SGN-E243188 [cLEE-2-C13]">
      <seq>ggcaaagtagctggtcaaaacgcaaggctgtttctatcgctgataagcttgaacaagagaatttgagattagaagcaaggtcaaggagcttgctttgttggaaggctagaagagtcacccgccgacagctttcgcgattgaaaacaagaagtaggaggccaaagagcttactgaggttcgtttcttgcggaaaatgtctctctggtaggtctccaaggtagcagtgaaatgtatcagattaatttccagttttagttctactatttgttcaacgtcagtcaatctttgtttagaaggtcaattttattttttccaataataaatggaaggtgcaacattattaatatatctttttctagtttagcaattttctcttttagatgtctacagtagctctcatgtactacaacactattctacattcttataaattattgggaattcatttttcctcttttactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="76432" stop="79030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76732" g_stop="76795" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76796" i_stop="77348" i_length="553">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77349" g_stop="77412" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="128" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77413" i_stop="78389" i_length="977">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78390" g_stop="78733" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="472" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E243188" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76732" e_stop="76795"/>
          <exon e_start="77349" e_stop="77412"/>
          <exon e_start="78390" e_stop="78733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGTAGCTGGTCAAAACGCAAGGCTGTTTCTATCGCTGATAAGCTTGAACAAGAGAATTTGTATGTACCTCTTTACCCATCCTTCTTGTATTACCACATCATATATCAGATTGTATATGTGTCTCAGATGTGTAATCATTTGCTTGAAGAGACAAATAATATACCATCAAAACGTATGTCTTTAAGTTATGTTTTGATTTAATATAGCAGTACAGAACTACAGATGCAGAAAAGATTAGAGAATGCCCTACTGTTATAGAGTGGATATTTTGTATTAAATGAAATGTGGAGCACAAGCAGTCCATTCATCCTTCACTTGTTGGTGGATGGAATGATACACATGCTAGAAAAATACACTCCATCCAGATTAGTGTTGTCCTGTCGTCAATTATCAGCTAAAGGACCCCATAGAAAATGTTACAACCTTTAAGTATAACATCAGGACATATGGCACCACTTTACTTTTTGTTGGAATGAGTATTCTTATATTGCATAGTTCTTATAGTAGGTATAGCTATCTTCATTTGATATTCAGTTGTTCTTGGAAACACACAAGTGATCCTCTTTTAATTGGACTATTCTCATGTAGTAATGTGATCTTTCTTCTCTGCAGGAGATTAGAAGCAAGGTCAAGGAGCTTGCTTTGTTGGAAGGCTAGAAGAGTCACCCGCCGACAGGTAAACAGATTCAAACATCTATTTTCTTTTTCAATTTATTCAAGAGTCCTTTTAATGTTTTCTACACATCTTAGACTTTTCAAGTTGTATGTCAACGTAGTTGCATTCATCCGTTAATTGGAATTTGACATACTGCACTAAGGTGCAAGTATAGGCAAGTATGAAGATGTTTCAGTTCCTAACATATCAAATCAAGATGCTTCCTTGCCGGCTGCCTTGTCTTACATTTAGCTATATGATGATGGACCATGAGCAAAAATATCTTACGCACCCAAAAAGAAAAAAATAGAGATTAGCAAAAGAGTATAGTGGGTTGTATGCACAAGTTGGGCATCGATGGAATACCTCGACTATTCCACCAGGTGCCTCTATCCACAGGTATCGAATAACTTTAAACACCAAGGCTTAGGTGGATGGAAAGAAATTGCCTGGTGTTTTTTGCACTTGAGACTTCGTGGTTCTCCTCTCATTTCATTGACCATTAAATTAAACCGCGTCCTTGGATGCAAATCCAGTTCAAAGCTGGAAATAGCGAATTAACTGACCTATTCTATGGCTTCCAGAGTATTCTAGGACAATCGCACGTGATTCGTAGTTCCCTCTGGGCTCTGGCAGTGCATGAGATGTTTAAACTATATAATGCTACTGTCAATTCAGCCAATTTTTTTTGTAAAAGCTATCACCATTCCGAATATAAAAGCTCTTTGAGGAACATCAGACTATAGCACAGTTTTGATTACTGACACTGAGGCACGATGCTGAAGGAGAGACTTATTTATCTATGGGAAAATACTCTTTAGTGGAGTAAATGGGATATAAATCCTTTCACTTGTAGCTTCTTATTTCTTTTGTTTCATGATTTAGAAGGCTTTACACCAACTTGTTACAGGATATATTACTGACTTATTATCAAATTTAGTAGCCCTACTGATTTATTTGAAACTATCAGTTATAACAGAATTGTTTATCGCGTGCAGCTTTCGCGATTGAAAACAAGAAGTAGGAGGCCAAAGAGCTTACTGAGGTTCGTTTCTTGCGGAAAATGTCTCTCTGGTAGGTCTCCAAGGTAGCAGTGAAATGTATCAGATTAATTTCCAGTTTTAGTTCTACTATTTGTTCAACGTCAGTCAATCTTTGTTTAGAAGGTCAATTTTATTTTTTCCAATAATAAATGGAAGGTGCAACATTATTAATATATCTTTTTCTAGTTTAGCAATTTTCTCTTTTAGATGTCTACAGTAGCTCTCATGTACTACAACACTATTCTACATTCTTATAAATTATTGGGAATTCATTTTTCCTCTTTTACTATGACATATGT</genome_strand>
        <mrna_strand>GGCAAAGTAGCTGGTCAAAACGCAAGGCTGTTTCTATCGCTGATAAGCTTGAACAAGAGAATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTAGAAGCAAGGTCAAGGAGCTTGCTTTGTTGGAAGGCTAGAAGAGTCACCCGCCGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGCGATTGAAAACAAGAAGTAGGAGGCCAAAGAGCTTACTGAGGTTCGTTTCTTGCGGAAAATGTCTCTCTGGTAGGTCTCCAAGGTAGCAGTGAAATGTATCAGATTAATTTCCAGTTTTAGTTCTACTATTTGTTCAACGTCAGTCAATCTTTGTTTAGAAGGTCAATTTTATTTTTTCCAATAATAAATGGAAGGTGCAACATTATTAATATATCTTTTTCTAGTTTAGCAATTTTCTCTTTTAGATGTCTACAGTAGCTCTCATGTACTACAACACTATTCTACATTCTTATAAATTATTGGGAATTCATTTTTCCTCTTTTACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572820" ref_strand="+" ref_description="SGN-E572820 [32033]">
      <seq>tttttccagaaaggtagaatcttggtgttgtttttacagttttttggtatacccatatagaaatctcactgaaatttgcacaaataagatcaagaaagcatttttcagtgggaaacaagaaaagggttggagttgattattcaagattttggtgaaattgggtgttggaaattgatggcatctgctgcaattttctcatcgttgaggatacaaaggtcgccgacactggaagcgttcttggcgccggtggatctgacagatgttgggttgttgcaaacactaacggcgttatcttctgagctgatttctgcatattcaggtaaaaagctgccgttttatcagcggaagaattgtaagtctttgttaaggaaaattcaagtgttttctgttctcttggaatgtcttcttgagaataacaagaacagaagtaggggttcttcagatttgccgtttacagcttttttgtgcttcaaggaattgtatttattgctttaccggtcgaaaatcttgcttgattattgctctcattccagtaagttgtggctgttgctacaaaaccattcgatttcaggtcatttccatgatttgaaccaagaaatctcgaaccttttggatgttttccccttacaggatttaacaagttacctgaagatgtcagggaacaggttgagtcgttgaagaaacaagcaagaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="88179" stop="89480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88478" g_stop="89180" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E572820" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88478" e_stop="89180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGAAGACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTTATTCAAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATCTCGACCCTTTTGGATGTTTTCCCCTTAAAGGATTTAAAAAATTTATCTGAAGATGTTAGGGAACAGGTTGAGTTGTTGAAGAAACAAGCAAGAAAATC</genome_strand>
        <mrna_strand>TTTTTCCAGAAAGGTAGAATCTTGGTGTTGTTTTTACAG----TTTTTTGGTATACCCATATAGAAATCTCACTGAAAT-TTGCACAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGTTGGAGTTGATTATTCAAGATTTTGGTGAAATTGGGTGTTGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGGATACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACACTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAAGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTGTTTTCTGTTCTCTTGGAATGTCTTCTTGAGAATAACAAGAACAGAAGTAGGGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAATTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTCATTCCAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATCTCGAACCTTTTGGATGTTTTCCCCTTACAGGATTT-AACAAGTTACCTGAAGATGTCAGGGAACAGGTTGAGTCGTTGAAGAAACAAGCAAGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212250" ref_strand="+" ref_description="SGN-E212250 [cLEC-75-H5]">
      <seq>ttgaaattgttttctttcttgaatgagtttgagaatggtggtgttcctgactatgctcagttgtactctttttttgtggaaaaattggggatttgtaatcctaggagttgcagagttgagattgagtttttggaggagcagattgtgaaccatgaaggagatattgagcccacatcctcagttctcaacgggtttgtggcgttgatgcgatactgcaggtttttgctatttggctttgaagaggatgatatggggttgagattgggtaagcataagaagccgaagagagggctgattagtcaagagattgcagagacattcatttctgtaccaaaggacttctggtgtccgatatcgttggatttgatgagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="88918" stop="89892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89218" g_stop="89592" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E212250" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89218" e_stop="89592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGAT</genome_strand>
        <mrna_strand>TTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGGTGTCCGATATCGTTGGATTTGATGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248309" ref_strand="+" ref_description="SGN-E248309 [cLEG-1-I11]">
      <seq>gggtttgtggcgttgatgcgatactgcaggtttttgctatttggctttgaagaggatgatatggggttgagattgggtaagcataagaagccgaagagagggctgattagtcaagagattgcagagacattcatttctgtaccaaaggacttctgttgtccgatatcgttggatttgatgagggatccagttattgtggcaacagggcagacatatgatcgagcttctatatcgaggtggatggaggagggtcactgtacttgcccaaagacagggcagttgcttgatcatacccggcttgtgccaaacagggctcttaggaatttgattatgcattggtgtgctgctcgcaaaattccctatgaccctctggagagtggggatccatgtgttgaatgttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89107" stop="90311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89407" g_stop="90011" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E248309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89407" e_stop="90011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATC</genome_strand>
        <mrna_strand>GGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262531" ref_strand="+" ref_description="SGN-E262531 [cLEG-63-K11]">
      <seq>gttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89504" stop="90617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89804" g_stop="90317" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E262531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89804" e_stop="90317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATC</genome_strand>
        <mrna_strand>GTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258784" ref_strand="+" ref_description="SGN-E258784 [cLEG-50-B17]">
      <seq>ttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89505" stop="90488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89805" g_stop="90188" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E258784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89805" e_stop="90188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCT</genome_strand>
        <mrna_strand>TTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211255" ref_strand="+" ref_description="SGN-E211255 [cLEC-70-N16]">
      <seq>tgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatccacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgctgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaatggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaggagaatgctgttgctgcattacttgaattatgcccgcgtggtggagcagctgctactgagaaggtcttgaangcgccgtcattagcaagtttacttcagacgttgctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89613" stop="90939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89913" g_stop="90639" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E211255" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89913" e_stop="90639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTT</genome_strand>
        <mrna_strand>TGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCCGCGTGGTGGAGCAGCTGCTACTGAGAAGGTCTTGAANGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209534" ref_strand="+" ref_description="SGN-E209534 [cLEC-54-L21]">
      <seq>agaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatccacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89651" stop="90692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89951" g_stop="90392" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E209534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89951" e_stop="90392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGA</genome_strand>
        <mrna_strand>AGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459753" ref_strand="+" ref_description="SGN-E459753 [cPRO-28-H14]">
      <seq>ttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggtcgaattattgatgaagtagggtgtctggcgttgatagttggagtgttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattgttcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcaggtctgttgcgagaaggttctccccgagggaagaaggatgcagtaactgctctatttaatttgtctacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgccgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaacggcagtagcagggctcatttcaatgatgcgatgtgggacaccaagagggaaagagaatgcagttgctgcattgcttgaattatgccgtggtggtggagcagctgctactgagagggtcttgaaggcgccgtcattagcaagtttacttcagacattgctctttacaggaaacaagcgcgccaggaggaaagcagcatcgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89706" stop="90981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90006" g_stop="90681" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E459753" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90006" e_stop="90681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCT</genome_strand>
        <mrna_strand>TTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGTCGAATTATTGATGAAGTAGGGTGTCTGGCGTTGATAGTTGGAGTGTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTGTTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCAGGTCTGTTGCGAGAAGGTTCTCCCCGAGGGAAGAAGGATGCAGTAACTGCTCTATTTAATTTGTCTACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCCGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAACGGCAGTAGCAGGGCTCATTTCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCTGCATTGCTTGAATTATGCCGTGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACATTGCTCTTTACAGGAAACAAGCGCGCCAGGAGGAAAGCAGCATCGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406316" ref_strand="+" ref_description="SGN-E406316 [PPI-3-M6]">
      <seq>gaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggtcgaattattgatgaagtagggtgcctggcattgatagttggagtgttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattgttcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcaggtctgttgcgagaaggttcttctcgagggaagaaggatgcagtaactgctctatttaatttgtctacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgccgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaacggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaagagaatgcagttgctgcattgcttgaattatgccgtggtggtggagcagctgctactgagagggtcttgaaagcgccgtcattagcaagtttacttcagacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89731" stop="90934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90031" g_stop="90634" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E406316" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90031" e_stop="90634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGC</genome_strand>
        <mrna_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGTCGAATTATTGATGAAGTAGGGTGCCTGGCATTGATAGTTGGAGTGTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTGTTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCAGGTCTGTTGCGAGAAGGTTCTTCTCGAGGGAAGAAGGATGCAGTAACTGCTCTATTTAATTTGTCTACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCCGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAACGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCTGCATTGCTTGAATTATGCCGTGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAAGCGCCGTCATTAGCAAGTTTACTTCAGACATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420477" ref_strand="+" ref_description="SGN-E420477 [STM-31-E8]">
      <seq>gaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggtcgaattattgatgaagtagggtgcctggcattgatagttggagtgttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattgttcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcaggtctgttgcgagaaggttcttctcgagggaagaaggatgcagtaactgctctatttaatttgtctacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgccgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaacggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaagagaatgcagttgctgcattgcttgaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="89731" stop="90861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90031" g_stop="90561" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E420477" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90031" e_stop="90561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGC</genome_strand>
        <mrna_strand>GAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGTCGAATTATTGATGAAGTAGGGTGCCTGGCATTGATAGTTGGAGTGTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTGTTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCAGGTCTGTTGCGAGAAGGTTCTTCTCGAGGGAAGAAGGATGCAGTAACTGCTCTATTTAATTTGTCTACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCCGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAACGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCTGCATTGCTTGAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574246" ref_strand="+" ref_description="SGN-E574246 [33684]">
      <seq>tatgttctctctttctttgtcgcgtttatatttcaatgaaagaatttttgaatattacaggcaaaactaagaacaaaagatgaatggtgataagtaccccctcctataatactggaactgaaatggacatggacactgagacatcaccaggaaaagttgaatccctagctgcagctgagtttccagaaaatgcatatcctacaccaaacccgctataatgaactgatgcatgctcacaccgttggaatactctagcaagcgatgctgctttcctccttggcgcgctttgttcctgtaaagagcaatgtctgaagtaaacttgctaatgacggcgccttcaagaccctctcagtagcagctgctccaccaccacggcataattcaagcaatgcagcaactgcattctctttccctcttggtgtcccacatcgcatcattgcaatgagccctgctactgccgtttcctcattgccaacagctgtagcaccaacttgctgcctaacaatcagcgccaatgcaccagcagcttcttcggcaacaccttcacttcccaaagctccaactagagcagtaacagctccagactctatcatcctcggcacaattatctgtgtgggtagacaaattaaatagagcagttactgcatccttcttccctcgagaagaaccttctcggaacagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="-" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="91228" stop="89955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90932" g_stop="90253" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="-" ref_id="SGN-E574246" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90932" e_stop="90253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATTTCTCTCTTTCTTTGTCGCGTTTATATTTCAATGAAAGAATTTTTGAATATTACAAGTAAAACTAAGAACAAAAGATGAATGGTGGTAAGTA---CC-CCTATAATACTGGAACTGAAATGGACATGGACACTGAGACATCACCAGGAAAAGTTGAATCCCTAGCAGCAGCTGAGTTTCCAGCAAATGCATATCCTACACCAAACCCACTATAATGAACTGCTGCATGCTCACACCGTTGGAATACTCTAGCAAGCGATGCTGCTTTCCTCCTT-GCGCGCTTTGTTCCTGTAAAGAGCAACGTCTGAAGTAAACTTGCTAATGACGGCGCCTTCAAGACCCTCTCAGTAGCAGCTGCTCCACCACCGCGGCATAATTCAAGTAATGCAGCAACAGCATTCTCCTTCCCTCTTGGTGTCCCACATCGCATCATTGCAATGAGCCCTGCTACTGCCATTTCCTCATTGCCAACAGCTGTAGCACCAACTTGCTGCCTAACAATCAGCGCCAATGCACCAGCAGCTTCTTCAGCAACACCTTCACTTCCCAAAGCTCCAACTAGAGCAGTAACAGCTCCAGACTCTATCATCCTC-GCACAATTATCTGTGTGGGTGGATAAATTAAATAGAGCAGTTACTGCATCTTTCTTCCCTCTGGGAGAACCTTCTCGCAACAGACC</genome_strand>
        <mrna_strand>TATG--TTCTCTCTTTCTTTGTCGCGTTTATATTTCAATGAAAGAATTTTTGAATATTACAGGCAAAACTAAGAACAAAAGATGAATGGTGATAAGTACCCCCTCCTATAATACTGGAACTGAAATGGACATGGACACTGAGACATCACCAGGAAAAGTTGAATCCCTAGCTGCAGCTGAGTTTCCAGAAAATGCATATCCTACACCAAACCCGCTATAATGAACTGATGCATGCTCACACCGTTGGAATACTCTAGCAAGCGATGCTGCTTTCCTCCTTGGCGCGCTTTGTTCCTGTAAAGAGCAATGTCTGAAGTAAACTTGCTAATGACGGCGCCTTCAAGACCCTCTCAGTAGCAGCTGCTCCACCACCACGGCATAATTCAAGCAATGCAGCAACTGCATTCTCTTTCCCTCTTGGTGTCCCACATCGCATCATTGCAATGAGCCCTGCTACTGCCGTTTCCTCATTGCCAACAGCTGTAGCACCAACTTGCTGCCTAACAATCAGCGCCAATGCACCAGCAGCTTCTTCGGCAACACCTTCACTTCCCAAAGCTCCAACTAGAGCAGTAACAGCTCCAGACTCTATCATCCTCGGCACAATTATCTGTGTGGGTAGACAAATTAAATAGAGCAGTTACTGCATCCTTCTTCCCTCGAGAAGAACCTTCTCGGAACAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595449" ref_strand="-" ref_description="SGN-E595449 [38723]">
      <seq>acagctgttggcaatgaggaaacgccattagcagggctcatgttcaatgatgcgatgtgggacaccaagagggaaagagaatccagttcctgcattgcttgaattatgcccgtggtggtggagcagctgctactgagagggtcttgaaggcgccgtcattagcaagtttacttcagacattgctctttacaggaacaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaacggtgtgagcatgcatcagttcattatagcgggtttggtgtaggatatgcattttctgggaactcagctgcagctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggagggggtacttatcaccattcatcttttgttcttagttttgcctgtaatattcaaaaattctttcattgatatataaacgcgacaaagaaagagagaaaaaaaaaagaaaaaactccgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="90154" stop="91232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90454" g_stop="90926" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="494"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E595449" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595449" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90454" e_stop="90926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCAT-TGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATG-CCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTAT---A-GGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAA</genome_strand>
        <mrna_strand>ACAGCTGTTGGCAATGAGGAAACGCCATTAGCAGGGCTCATGTTCAATGATGCGATGTGGGACACCAAGAGGGAAAGAGAATCCAGTTCCTGCATTGCTTGAATTATGCCCGTGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACATTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCATCAGTTCATTATAGCGGGTTTGGTGTAGGATATGCATTTTCTGGGAACTCAGCTGCAGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGAGGGGGTACTTATCACCATTCATCTTTTGTTCTTAGTTTTGCCTGTAATATTCAAAAATTCTTTCATTGATATATAAACGCGACAAAGAAAGAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219184" ref_strand="+" ref_description="SGN-E219184 [cLEL-11-B13](-)">
      <seq>agcagctgctactgaaagggtcttgaaggcgccgtcattagcaagtttacttcagacgttgctctttacaggaacaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaacggtgtgagcatgcagcagttcattatagtgggtttggtgtaggatatgcatttgctggaaactcagctgctgctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggggtacttaccaccattcatcttttgttcttagttttacttgtaatattcaaaaattctttcattgaaatataaacgcgacaaagaaagagagaaatcataggaataccacaaaattcatgtgttcttagcattttgcagaatacagtgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="90273" stop="91287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90573" g_stop="90987" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="429"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E219184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90573" e_stop="90987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAAA</genome_strand>
        <mrna_strand>AGCAGCTGCTACTGAAAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219613" ref_strand="+" ref_description="SGN-E219613 [cLEL-11-B14](-)">
      <seq>accaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaccggtgtgagcatgcagcagttcattatagtgggtttggtgtaggatatgcatttgctggaaaactcagctgctgctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggggtacttaccaccattcatcttttgttcttagttttacttgtaatattcaaaaattctttcattgaaatataaacgcgacaaagaaagagagaaatcataggaataccacaaaattcatgtgttcttagcattttgcagaaaacagtgcctcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0011K05-p7ZAm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0011K05.1" temp_strand="+" temp_description="C02SLe0011K05.1  AC215445.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0011K05 sequenced_by:kribb upload_account_name:korea">
        <position start="90347" stop="91284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90645" g_stop="90979" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="358"/>
      <MATCH_line gen_id="C02SLe0011K05.1" gen_strand="+" ref_id="SGN-E219613" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0011K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90645" e_stop="90979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGG-AAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGT</genome_strand>
        <mrna_strand>ACCAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCACCGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAAAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>142</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5184" PGL_stop="6090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5184" e_stop="5333"/>
            <exon e_start="5626" e_stop="6090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.957" e_score="0.947"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="5184" e_stop="5333" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.957">
            <gDNA_intron_boundary i_start="5334" i_stop="5625" i_length="292"/>
          </intron>
          <exon e_serial="2" e_score="0.908">
            <gDNA_exon_boundary e_start="5626" e_stop="6090" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5184" stop="5333"/>
              <exon start="5626" stop="6024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5266" stop="5333"/>
              <exon start="5626" stop="6090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATACATATAACATATATAGAGAGAGAAACAAAGAGTAAGAGAGACTAAACCCTAGATTTCATTCTGACTGAAAGCAGAGTATTTTGTATTTTGACCAACAAAGAGCTGTGTTTACATCTAATTTTTTTTCCGTCATTATTCATAAAG : ATCTTTTTGAAATGTACTCAGTTTGATAAACAAGAAGAGGCTATTGGGTTTTGGTTGGTGGGTGTGATTCAGTCTGAGGAAGTTGTTTTGTGATGTATGTGGATTGAGTTTTTTGAAGAGAAAAAAAGTTTCTGTTTGGTCTGTTTTCTAATTTGAGGATCTGCTGAAGGAGTTTTTGCAAATAAAGGGCTTGTAAAGATGATGTCCAAATCTTATACCAACTTGCTAGATCTAGCATCTGGGAATTTCCCGGTGATGGGGCGGGAAAAGAAGCGGCTGCCACGGGTAATGACAGTTGCTGGAGTTATTTCTGAGCTTGATGATGATCAAGCTAATAGTGTTACATCAGATGTTCCATCATCAATTATTGTAGATCGAATAATTATAGTGGCTAATCAGCTCCCTGTAAAAGCTAAGCGTAGGTCGGATAATAAAGGATGGAATTTTAGTTGGGATGAGGATTCG</gDNA_template>
            <first_frame> Y  I  H  I  T  Y  I  E  R  E  T  K  S  K  R  D  *  T  L  D  F  I  L  T  E  S  R  V  F  C  I  L  T  N  K  E  L  C  L  H  L  I  F  F  P  S  L  F  I  K  :  I  F  L  K  C  T  Q  F  D  K  Q  E  E  A  I  G  F  W  L  V  G  V  I  Q  S  E  E  V  V  L  *  C  M  W  I  E  F  F  E  E  K  K  S  F  C  L  V  C  F  L  I  *  G  S  A  E  G  V  F  A  N  K  G  L  V  K  M  M  S  K  S  Y  T  N  L  L  D  L  A  S  G  N  F  P  V  M  G  R  E  K  K  R  L  P  R  V  M  T  V  A  G  V  I  S  E  L  D  D  D  Q  A  N  S  V  T  S  D  V  P  S  S  I  I  V  D  R  I  I  I  V  A  N  Q  L  P  V  K  A  K  R  R  S  D  N  K  G  W  N  F  S  W  D  E  D  S </first_frame>
            <second_frame>  I  Y  I  *  H  I  *  R  E  K  Q  R  V  R  E  T  K  P  *  I  S  F  *  L  K  A  E  Y  F  V  F  *  P  T  K  S  C  V  Y  I  *  F  F  F  R  H  Y  S  *  R :   S  F  *  N  V  L  S  L  I  N  K  K  R  L  L  G  F  G  W  W  V  *  F  S  L  R  K  L  F  C  D  V  C  G  L  S  F  L  K  R  K  K  V  S  V  W  S  V  F  *  F  E  D  L  L  K  E  F  L  Q  I  K  G  L  *  R  *  C  P  N  L  I  P  T  C  *  I  *  H  L  G  I  S  R  *  W  G  G  K  R  S  G  C  H  G  *  *  Q  L  L  E  L  F  L  S  L  M  M  I  K  L  I  V  L  H  Q  M  F  H  H  Q  L  L  *  I  E  *  L  *  W  L  I  S  S  L  *  K  L  S  V  G  R  I  I  K  D  G  I  L  V  G  M  R  I   </second_frame>
            <third_frame>   Y  T  Y  N  I  Y  R  E  R  N  K  E  *  E  R  L  N  P  R  F  H  S  D  *  K  Q  S  I  L  Y  F  D  Q  Q  R  A  V  F  T  S  N  F  F  S  V  I  I  H  K   : D  L  F  E  M  Y  S  V  *  *  T  R  R  G  Y  W  V  L  V  G  G  C  D  S  V  *  G  S  C  F  V  M  Y  V  D  *  V  F  *  R  E  K  K  F  L  F  G  L  F  S  N  L  R  I  C  *  R  S  F  C  K  *  R  A  C  K  D  D  V  Q  I  L  Y  Q  L  A  R  S  S  I  W  E  F  P  G  D  G  A  G  K  E  A  A  A  T  G  N  D  S  C  W  S  Y  F  *  A  *  *  *  S  S  *  *  C  Y  I  R  C  S  I  I  N  Y  C  R  S  N  N  Y  S  G  *  S  A  P  C  K  S  *  A  *  V  G  *  *  R  M  E  F  *  L  G  *  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5782" stop="6090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSAEGVFANKGLVKMMSKSYTNLLDLASGNFPVMGREKKRLPRVMTVAGVISELDDDQANSVTSDVPSSIIVDRIIIVANQLPVKAKRRSDNKGWNFSWDEDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6098" PGL_stop="10398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6098" e_stop="7805"/>
            <exon e_start="7893" e_stop="8166"/>
            <exon e_start="9141" e_stop="10398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6098" e_stop="7805" e_length="1708"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7893" e_stop="8166" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="9141" e_stop="10398" e_length="1258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6098" stop="6595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6223" stop="6791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6291" stop="6878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6291" stop="6706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6555" stop="7339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7266" stop="7800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7459" stop="7800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7520" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7637" stop="7805"/>
              <exon start="7893" stop="8011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7638" stop="7805"/>
              <exon start="7893" stop="8142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8123" stop="8166"/>
              <exon start="9141" stop="9659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9161" stop="9765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9322" stop="9800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9355" stop="9941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9423" stop="10116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9725" stop="10173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10093" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCACATAAAAGATGGGTTGCCAGATGATATGGAAGTTCTCTATGTTGGTTCTTTAAAGGTTGAGGTCGATTCAAGTGAACAGGATGATGTTTCACAGTTGCTGCTGGATAGATTTAAATGTGTTCCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAAACTTCTGGCATTGGAGGAAATGTTAAAACAACATCCTAAGTGGCAAGGAAGAGCAGTGCTGGTCCAGATTGCTAATCCAGCTCGAGCAAAAGGAAAAGATATTGAGGAAATACAAGAAGAAATTCAAACAAGCGTCAAGAGAATCAATGACAAGTTTAGACAGCCTGGTTATGAACCCATCGTGTTCATTGATCGCCCAGTTTCTCTTAGTGAACGGACTGCCTATTACTCTGTTGCTGAGTGTGTAGTTGTAACTGCAGTAAGAGATGGCATGAACCTTACACCATATGAATACGTTGTGTGTAGGCAGGGCATCCCCGGTTCAGAGTGCACTGCAGAGTCCAATGGTCTGAAAAGCAGCATGCTGGTAGTGTCTGAGTTCATTGGCTGTTCTCCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG : GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG : GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCATTGTTAGATCAACTGTGAACAGGTGTTTTTTCTTCTCTTTTGCTTCATTTATTTAAGGATTCCTTCTTTTGCATCTAGGAGTGAGGTTATTATTGTTGTTGGGATACACCAATTTGTTGGATTCTCATAATTGTAAATGCTATAGAATTTTACCTTCTCTTTTCTTCCTTGTGATAGAGTTCCTAAACTAAATTTCGTAAGCTAGAACATGACAAAAAAAAACCAGGTGATTGTTAATAGTGACATCAATTATTCTTGGTCTTTCAAGTGGTAGTTTGCAGAACAAACATTTGATTCCTAATATTTGTAATATAAAGGTGGAAGTTTATATCTAGCTTTGTGAGCATCAAGCTGCTTTTTAATTCTTTCTTAAACCAGTCCT</gDNA_template>
            <first_frame> C  T  *  K  M  G  C  Q  M  I  W  K  F  S  M  L  V  L  *  R  L  R  S  I  Q  V  N  R  M  M  F  H  S  C  C  W  I  D  L  N  V  F  L  L  F  Y  L  Q  T  F  Y  L  N  I  I  T  V  F  A  N  S  I  Y  G  L  F  S  I  I  C  F  P  T  L  L  V  M  A  V  D  L  I  G  R  G  G  R  H  M  L  Q  Q  T  R  Y  F  P  R  R  L  L  R  *  *  I  P  R  M  T  M  S  G  S  M  I  I  I  *  W  F  Y  L  H  S  C  V  G  V  S  I  G  C  E  W  G  S  F  C  I  A  L  S  L  H  Q  R  Y  I  G  R  F  Q  *  E  R  R  F  S  R  P  Y  *  I  L  T  *  L  V  S  I  R  S  I  M  H  G  I  S  Y  P  V  V  V  A  C  W  D  *  S  I  S  Q  R  G  V  T  L  D  L  N  T  S  D  G  Q  W  G  S  R  L  C  Q  L  G  F  T  *  G  R  L  K  M  C  F  N  *  Q  I  K  S  R  E  L  Q  N  L  S  N  N  L  K  V  K  L  F  Y  L  V  L  M  I  W  T  F  S  K  V  S  I  *  N  F  W  H  W  R  K  C  *  N  N  I  L  S  G  K  E  E  Q  C  W  S  R  L  L  I  Q  L  E  Q  K  E  K  I  L  R  K  Y  K  K  K  F  K  Q  A  S  R  E  S  M  T  S  L  D  S  L  V  M  N  P  S  C  S  L  I  A  Q  F  L  L  V  N  G  L  P  I  T  L  L  L  S  V  *  L  *  L  Q  *  E  M  A  *  T  L  H  H  M  N  T  L  C  V  G  R  A  S  P  V  Q  S  A  L  Q  S  P  M  V  *  K  A  A  C  W  *  C  L  S  S  L  A  V  L  L  L  *  V  V  L  Y  V  *  T  H  G  M  W  K  Q  L  Q  K  H  *  M  R  Q  F  Q  W  L  M  V  R  R  C  C  A  M  R  S  I  T  S  M  *  A  H  M  T  *  L  I  G  Q  E  A  S  S  R  I  W  R  E  V  A  E  T  I  S  G  D  V  A  G  V  *  A  *  A  S  V  L  G  L  *  H  L  I  L  I  L  K  S  Y  P  L  T  L  L  F  L  L  T  Q  E  P  K  I  G  Q  Y  C  W  I  M  M  A  L  S  C  L  K  Q  P  S  I  R  S  L  V  P  K  L  F  Q  L  L  T  H  F  V  G  M  K  E  I  P  C  F  L  *  V  D  E  E  G  I  V  *  A  S  G  F  L  R  V  R  N  L  V  L  L  R  N  T  D  T  S  *   : G  G  L  Q  I  K  N  G  K  S  *  G  R  T  M  I  S  S  G  C  R  *  L  N  L  L  *  N  S  I  Q  K  L  Q  M  G  L  P  L  K  Q  K  R  V  L  L  F  G  I  I  E  M  Q  I  L  V  L  G  L  A  K  L  K  R  C  *  T  I  L  R  V  F  L  Q  M  S  L  L  L  *  R  V  G  S  S  L  L  K  L  S  L  R :   E  L  V  K  V  *  L  Q  R  K  F  L  Q  Q  W  L  R  V  A  G  R  L  T  L  C  C  A  *  V  M  I  G  L  T  R  T  C  L  R  L  L  E  M  Q  *  I  V  V  Y  F  L  Q  A  R  K  C  M  L  A  Q  W  D  K  S  Q  V  K  P  H  I  I  L  M  T  P  Q  K  L  E  P  C  F  M  L  L  P  R  N  P  F  L  L  L  H  Q  K  L  *  H  E  A  L  F  G  V  Y  P  F  L  Y  F  S  E  C  T  P  Q  *  L  N  P  L  K  L  C  K  E  N  I  I  R  A  W  T  N  A  *  C  I  F  H  Y  Y  S  Q  K  M  E  G  E  I  L  Y  R  I  L  C  Q  M  V  S  P  S  I  I  K  L  K  L  A  F  S  S  S  K  E  P  *  L  L  G  L  R  F  N  *  S  Q  M  F  *  Y  R  E  A  L  L  G  Q  L  V  I  C  V  K  L  T  L  K  G  R  A  V  P  N  G  N  L  R  S  L  Q  K  I  Y  T  Q  E  T  H  R  M  A  E  A  N  R  A  F  A  H  F  R  *  S  M  N  R  I  Y  T  S  V  L  P  L  L  N  T  Y  S  Y  S  S  Y  F  Y  E  G  H  T  S  V  S  C  L  A  Y  D  K  M  E  Q  Q  L  S  K  T  R  N  L  H  C  *  I  N  C  E  Q  V  F  F  L  L  F  C  F  I  Y  L  R  I  P  S  F  A  S  R  S  E  V  I  I  V  V  G  I  H  Q  F  V  G  F  S  *  L  *  M  L  *  N  F  T  F  S  F  L  P  C  D  R  V  P  K  L  N  F  V  S  *  N  M  T  K  K  N  Q  V  I  V  N  S  D  I  N  Y  S  W  S  F  K  W  *  F  A  E  Q  T  F  D  S  *  Y  L  *  Y  K  G  G  S  L  Y  L  A  L  *  A  S  S  C  F  L  I  L  S  *  T  S  P </first_frame>
            <second_frame>  A  H  K  R  W  V  A  R  *  Y  G  S  S  L  C  W  F  F  K  G  *  G  R  F  K  *  T  G  *  C  F  T  V  A  A  G  *  I  *  M  C  S  C  F  S  T  S  R  H  F  I  *  I  L  S  R  F  L  Q  T  A  F  M  A  S  F  P  L  Y  A  S  L  L  C  *  S  W  Q  S  I  *  S  V  V  V  G  G  I  C  C  S  K  Q  D  I  F  P  E  G  Y  *  G  D  K  S  R  G  *  L  C  L  D  P  *  L  S  F  N  G  F  T  Y  I  L  A  *  A  F  Q  S  A  A  N  G  V  L  S  A  *  P  F  P  F  I  R  D  I  *  D  A  S  S  E  R  G  D  S  Q  G  P  T  E  F  *  P  D  W  F  P  Y  V  R  L  C  T  A  F  P  I  L  L  *  S  H  V  G  I  R  V  S  V  K  E  G  L  H  W  T  *  I  L  R  T  D  S  G  D  Q  D  Y  A  S  W  D  S  H  E  A  D  *  K  C  A  S  T  S  R  *  R  V  E  S  C  R  T  *  A  T  I  *  R  *  N  C  F  T  W  C  *  *  Y  G  H  F  Q  R  C  R  F  E  T  S  G  I  G  G  N  V  K  T  T  S  *  V  A  R  K  S  S  A  G  P  D  C  *  S  S  S  S  K  R  K  R  Y  *  G  N  T  R  R  N  S  N  K  R  Q  E  N  Q  *  Q  V  *  T  A  W  L  *  T  H  R  V  H  *  S  P  S  F  S  *  *  T  D  C  L  L  L  C  C  *  V  C  S  C  N  C  S  K  R  W  H  E  P  Y  T  I  *  I  R  C  V  *  A  G  H  P  R  F  R  V  H  C  R  V  Q  W  S  E  K  Q  H  A  G  S  V  *  V  H  W  L  F  S  F  S  K  W  C  Y  T  C  E  P  M  E  C  G  S  N  C  R  S  T  E  *  G  N  F  N  G  *  W  *  E  G  V  A  P  *  E  A  L  Q  V  C  K  H  T  *  R  S  L  L  V  K  K  L  L  P  G  S  G  E  K  L  Q  R  P  F  Q  A  T  L  L  G  Y  R  L  E  L  R  F  *  G  C  S  T  *  S  *  F  *  K  A  I  H  *  H  Y  C  F  C  L  L  K  S  Q  K  S  G  N  I  V  G  L  *  W  H  S  H  A  S  N  S  H  Q  *  G  P  *  S  R  S  Y  F  N  Y  *  L  T  L  W  G  *  K  K  Y  R  V  S  C  E  W  T  R  K  G  *  F  R  P  V  V  F  S  V  *  E  T  W  Y  C  C  G  T  R  I  L  L  K  :  V  V  C  R  *  R  M  G  S  R  R  A  E  Q  *  F  P  V  D  A  D  S  *  T  C  Y  E  T  V  Y  R  S  Y  R  W  V  F  H  *  N  K  R  E  C  C  C  L  A  L  S  R  C  R  S  W  F  W  V  L  P  S  *  R  D  V  R  P  S  *  E  C  S  C  K  *  A  C  C  C  E  E  W  A  V  H  C  *  S  *  A  S   : G  S  *  *  R  S  S  C  R  E  N  F  C  N  N  G  *  E  W  P  A  G  *  L  C  A  V  R  R  *  *  *  V  *  R  G  H  V  *  D  Y  W  K  C  N  K  *  W  Y  T  F  F  K  H  G  S  V  C  L  H  S  G  T  K  A  K  *  S  H  I  L  S  *  *  H  R  R  S  *  N  H  A  S  C  S  C  R  G  I  H  S  S  S  S  I  R  N  C  N  M  K  L  C  L  E  Y  I  L  F  C  T  S  L  S  A  H  H  N  D  S  T  L  *  S  C  A  K  K  I  S  L  E  L  G  L  T  H  D  A  Y  F  I  I  T  L  K  K  W  K  E  R  Y  C  T  E  F  F  V  R  W  S  V  R  A  S  S  S  *  N  *  P  S  L  L  R  K  N  L  N  S  W  G  *  D  L  T  D  P  K  C  F  N  T  E  K  H  C  S  A  S  W  L  Y  V  *  S  *  H  *  R  G  E  Q  C  Q  M  V  I  F  V  A  F  R  K  Y  I  R  K  R  L  I  E  W  Q  R  Q  I  E  L  L  H  I  F  V  N  P  *  T  G  S  I  H  L  C  C  P  C  *  I  H  T  L  I  Q  V  T  F  T  K  A  T  R  Q  F  L  V  L  H  M  T  R  W  S  N  N  C  Q  R  L  V  T  C  I  V  R  S  T  V  N  R  C  F  F  F  S  F  A  S  F  I  *  G  F  L  L  L  H  L  G  V  R  L  L  L  L  L  G  Y  T  N  L  L  D  S  H  N  C  K  C  Y  R  I  L  P  S  L  F  F  L  V  I  E  F  L  N  *  I  S  *  A  R  T  *  Q  K  K  T  R  *  L  L  I  V  T  S  I  I  L  G  L  S  S  G  S  L  Q  N  K  H  L  I  P  N  I  C  N  I  K  V  E  V  Y  I  *  L  C  E  H  Q  A  A  F  *  F  F  L  K  P  V   </second_frame>
            <third_frame>   H  I  K  D  G  L  P  D  D  M  E  V  L  Y  V  G  S  L  K  V  E  V  D  S  S  E  Q  D  D  V  S  Q  L  L  L  D  R  F  K  C  V  P  A  F  L  P  P  D  I  L  S  K  Y  Y  H  G  F  C  K  Q  H  L  W  P  L  F  H  Y  M  L  P  Y  S  A  S  H  G  S  R  F  D  R  S  W  W  E  A  Y  V  A  A  N  K  I  F  S  Q  K  V  I  E  V  I  N  P  E  D  D  Y  V  W  I  H  D  Y  H  L  M  V  L  P  T  F  L  R  R  R  F  N  R  L  R  M  G  F  F  L  H  S  P  F  P  S  S  E  I  Y  R  T  L  P  V  R  E  E  I  L  K  A  L  L  N  S  D  L  I  G  F  H  T  F  D  Y  A  R  H  F  L  S  C  C  S  R  M  L  G  L  E  Y  Q  S  K  R  G  Y  I  G  L  E  Y  F  G  R  T  V  G  I  K  I  M  P  V  G  I  H  M  R  Q  I  E  N  V  L  Q  L  A  D  K  E  S  R  V  A  E  L  K  Q  Q  F  E  G  K  T  V  L  L  G  V  D  D  M  D  I  F  K  G  V  D  L  K  L  L  A  L  E  E  M  L  K  Q  H  P  K  W  Q  G  R  A  V  L  V  Q  I  A  N  P  A  R  A  K  G  K  D  I  E  E  I  Q  E  E  I  Q  T  S  V  K  R  I  N  D  K  F  R  Q  P  G  Y  E  P  I  V  F  I  D  R  P  V  S  L  S  E  R  T  A  Y  Y  S  V  A  E  C  V  V  V  T  A  V  R  D  G  M  N  L  T  P  Y  E  Y  V  V  C  R  Q  G  I  P  G  S  E  C  T  A  E  S  N  G  L  K  S  S  M  L  V  V  S  E  F  I  G  C  S  P  S  L  S  G  A  I  R  V  N  P  W  N  V  E  A  T  A  E  A  L  N  E  A  I  S  M  A  D  G  E  K  V  L  R  H  E  K  H  Y  K  Y  V  S  T  H  D  V  A  Y  W  S  R  S  F  F  Q  D  L  E  R  S  C  R  D  H  F  R  R  R  C  W  G  I  G  L  S  F  G  F  R  V  V  A  L  D  P  N  F  K  K  L  S  I  D  T  I  V  S  A  Y  S  R  A  K  N  R  A  I  L  L  D  Y  D  G  T  L  M  P  Q  T  A  I  N  K  V  P  S  P  E  V  I  S  I  I  N  S  L  C  G  D  E  R  N  T  V  F  L  V  S  G  R  G  R  D  S  L  G  Q  W  F  S  P  C  E  K  L  G  I  A  A  E  H  G  Y  F  L  R :   W  S  A  D  K  E  W  E  V  V  G  Q  N  N  D  F  Q  W  M  Q  I  A  E  P  V  M  K  Q  Y  T  E  A  T  D  G  S  S  I  E  T  K  E  S  A  V  V  W  H  Y  R  D  A  D  L  G  F  G  S  C  Q  A  K  E  M  L  D  H  L  E  S  V  L  A  N  E  P  V  A  V  K  S  G  Q  F  I  V  E  V  K  P  Q  :  G  V  S  K  G  L  V  A  E  K  I  F  A  T  M  A  E  S  G  R  Q  A  D  F  V  L  C  V  G  D  D  R  S  D  E  D  M  F  E  I  I  G  N  A  I  N  S  G  I  L  S  S  S  T  E  V  Y  A  C  T  V  G  Q  K  P  S  K  A  T  Y  Y  L  D  D  T  A  E  V  R  T  M  L  H  A  L  A  E  E  S  I  P  P  P  P  S  E  I  V  T  *  S  S  V  W  S  I  S  F  S  V  L  L  *  V  H  T  T  M  T  Q  P  F  E  V  V  Q  R  K  Y  H  *  S  L  D  *  R  M  M  H  I  S  L  L  L  S  K  N  G  R  R  D  I  V  Q  N  S  L  S  D  G  Q  S  E  H  H  Q  A  K  I  S  L  L  F  F  E  R  T  L  T  P  G  V  E  I  *  L  I  P  N  V  L  I  P  R  S  I  A  R  P  A  G  Y  M  C  E  V  D  T  E  G  E  S  S  A  K  W  *  S  S  *  P  S  E  N  I  Y  A  R  D  S  *  N  G  R  G  K  *  S  F  C  T  F  S  L  I  H  E  Q  D  L  Y  I  C  A  A  L  V  E  Y  I  L  L  F  K  L  L  L  R  R  P  H  V  S  F  L  S  C  I  *  Q  D  G  A  T  I  V  K  D  S  *  P  A  L  L  D  Q  L  *  T  G  V  F  S  S  L  L  L  H  L  F  K  D  S  F  F  C  I  *  E  *  G  Y  Y  C  C  W  D  T  P  I  C  W  I  L  I  I  V  N  A  I  E  F  Y  L  L  F  S  S  L  *  *  S  S  *  T  K  F  R  K  L  E  H  D  K  K  K  P  G  D  C  *  *  *  H  Q  L  F  L  V  F  Q  V  V  V  C  R  T  N  I  *  F  L  I  F  V  I  *  R  W  K  F  I  S  S  F  V  S  I  K  L  L  F  N  S  F  L  N  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6100" stop="7805"/>
                    <exon start="7893" stop="8166"/>
                    <exon start="9141" stop="9440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2277</number_coding_nucleotides>
                  <number_encoded_amino_acids>759</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIKDGLPDDMEVLYVGSLKVEVDSSEQDDVSQLLLDRFKCVPAFLPPDILSKYYHGFCKQHLWPLFHYMLPYSASHGSRFDRSWWEAYVAANKIFSQKVIEVINPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMRQIENVLQLADKESRVAELKQQFEGKTVLLGVDDMDIFKGVDLKLLALEEMLKQHPKWQGRAVLVQIANPARAKGKDIEEIQEEIQTSVKRINDKFRQPGYEPIVFIDRPVSLSERTAYYSVAECVVVTAVRDGMNLTPYEYVVCRQGIPGSECTAESNGLKSSMLVVSEFIGCSPSLSGAIRVNPWNVEATAEALNEAISMADGEKVLRHEKHYKYVSTHDVAYWSRSFFQDLERSCRDHFRRRCWGIGLSFGFRVVALDPNFKKLSIDTIVSAYSRAKNRAILLDYDGTLMPQTAINKVPSPEVISIINSLCGDERNTVFLVSGRGRDSLGQWFSPCEKLGIAAEHGYFLRWSADKEWEVVGQNNDFQWMQIAEPVMKQYTEATDGSSIETKESAVVWHYRDADLGFGSCQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFATMAESGRQADFVLCVGDDRSDEDMFEIIGNAINSGILSSSTEVYACTVGQKPSKATYYLDDTAEVRTMLHALAEESIPPPPSEIVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6098" e_stop="7805"/>
            <exon e_start="7893" e_stop="8166"/>
            <exon e_start="9141" e_stop="9818"/>
            <exon e_start="9898" e_stop="10016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.910"/>
          <exon-only e_score="0.866"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6098" e_stop="7805" e_length="1708"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7806" i_stop="7892" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7893" e_stop="8166" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8167" i_stop="9140" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="0.910">
            <gDNA_exon_boundary e_start="9141" e_stop="9818" e_length="678"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9819" i_stop="9897" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.866">
            <gDNA_exon_boundary e_start="9898" e_stop="10016" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6098" stop="6595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6223" stop="6791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6291" stop="6878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6291" stop="6706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6555" stop="7339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7266" stop="7800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7459" stop="7800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7520" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7637" stop="7805"/>
              <exon start="7893" stop="8011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7638" stop="7805"/>
              <exon start="7893" stop="8142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8166"/>
              <exon start="9141" stop="9187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7805"/>
              <exon start="7893" stop="8145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8123" stop="8166"/>
              <exon start="9141" stop="9818"/>
              <exon start="9898" stop="10016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8123" stop="8166"/>
              <exon start="9141" stop="9659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9161" stop="9765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9322" stop="9800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367149" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCACATAAAAGATGGGTTGCCAGATGATATGGAAGTTCTCTATGTTGGTTCTTTAAAGGTTGAGGTCGATTCAAGTGAACAGGATGATGTTTCACAGTTGCTGCTGGATAGATTTAAATGTGTTCCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAAACTTCTGGCATTGGAGGAAATGTTAAAACAACATCCTAAGTGGCAAGGAAGAGCAGTGCTGGTCCAGATTGCTAATCCAGCTCGAGCAAAAGGAAAAGATATTGAGGAAATACAAGAAGAAATTCAAACAAGCGTCAAGAGAATCAATGACAAGTTTAGACAGCCTGGTTATGAACCCATCGTGTTCATTGATCGCCCAGTTTCTCTTAGTGAACGGACTGCCTATTACTCTGTTGCTGAGTGTGTAGTTGTAACTGCAGTAAGAGATGGCATGAACCTTACACCATATGAATACGTTGTGTGTAGGCAGGGCATCCCCGGTTCAGAGTGCACTGCAGAGTCCAATGGTCTGAAAAGCAGCATGCTGGTAGTGTCTGAGTTCATTGGCTGTTCTCCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAG : GTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAGTATACAGAAGCTACAGATGGGTCTTCCATTGAAACAAAAGAGAGTGCTGTTGTTTGGCATTATCGAGATGCAGATCTTGGTTTTGGGTCTTGCCAAGCTAAAGAGATGTTAGACCATCTTGAGAGTGTTCTTGCAAATGAGCCTGTTGCTGTGAAGAGTGGGCAGTTCATTGTTGAAGTTAAGCCTCAG : GGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATAC : GTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCA</gDNA_template>
            <first_frame> C  T  *  K  M  G  C  Q  M  I  W  K  F  S  M  L  V  L  *  R  L  R  S  I  Q  V  N  R  M  M  F  H  S  C  C  W  I  D  L  N  V  F  L  L  F  Y  L  Q  T  F  Y  L  N  I  I  T  V  F  A  N  S  I  Y  G  L  F  S  I  I  C  F  P  T  L  L  V  M  A  V  D  L  I  G  R  G  G  R  H  M  L  Q  Q  T  R  Y  F  P  R  R  L  L  R  *  *  I  P  R  M  T  M  S  G  S  M  I  I  I  *  W  F  Y  L  H  S  C  V  G  V  S  I  G  C  E  W  G  S  F  C  I  A  L  S  L  H  Q  R  Y  I  G  R  F  Q  *  E  R  R  F  S  R  P  Y  *  I  L  T  *  L  V  S  I  R  S  I  M  H  G  I  S  Y  P  V  V  V  A  C  W  D  *  S  I  S  Q  R  G  V  T  L  D  L  N  T  S  D  G  Q  W  G  S  R  L  C  Q  L  G  F  T  *  G  R  L  K  M  C  F  N  *  Q  I  K  S  R  E  L  Q  N  L  S  N  N  L  K  V  K  L  F  Y  L  V  L  M  I  W  T  F  S  K  V  S  I  *  N  F  W  H  W  R  K  C  *  N  N  I  L  S  G  K  E  E  Q  C  W  S  R  L  L  I  Q  L  E  Q  K  E  K  I  L  R  K  Y  K  K  K  F  K  Q  A  S  R  E  S  M  T  S  L  D  S  L  V  M  N  P  S  C  S  L  I  A  Q  F  L  L  V  N  G  L  P  I  T  L  L  L  S  V  *  L  *  L  Q  *  E  M  A  *  T  L  H  H  M  N  T  L  C  V  G  R  A  S  P  V  Q  S  A  L  Q  S  P  M  V  *  K  A  A  C  W  *  C  L  S  S  L  A  V  L  L  L  *  V  V  L  Y  V  *  T  H  G  M  W  K  Q  L  Q  K  H  *  M  R  Q  F  Q  W  L  M  V  R  R  C  C  A  M  R  S  I  T  S  M  *  A  H  M  T  *  L  I  G  Q  E  A  S  S  R  I  W  R  E  V  A  E  T  I  S  G  D  V  A  G  V  *  A  *  A  S  V  L  G  L  *  H  L  I  L  I  L  K  S  Y  P  L  T  L  L  F  L  L  T  Q  E  P  K  I  G  Q  Y  C  W  I  M  M  A  L  S  C  L  K  Q  P  S  I  R  S  L  V  P  K  L  F  Q  L  L  T  H  F  V  G  M  K  E  I  P  C  F  L  *  V  D  E  E  G  I  V  *  A  S  G  F  L  R  V  R  N  L  V  L  L  R  N  T  D  T  S  *   : G  G  L  Q  I  K  N  G  K  S  *  G  R  T  M  I  S  S  G  C  R  *  L  N  L  L  *  N  S  I  Q  K  L  Q  M  G  L  P  L  K  Q  K  R  V  L  L  F  G  I  I  E  M  Q  I  L  V  L  G  L  A  K  L  K  R  C  *  T  I  L  R  V  F  L  Q  M  S  L  L  L  *  R  V  G  S  S  L  L  K  L  S  L  R :   E  L  V  K  V  *  L  Q  R  K  F  L  Q  Q  W  L  R  V  A  G  R  L  T  L  C  C  A  *  V  M  I  G  L  T  R  T  C  L  R  L  L  E  M  Q  *  I  V  V  Y  F  L  Q  A  R  K  C  M  L  A  Q  W  D  K  S  Q  V  K  P  H  I  I  L  M  T  P  Q  K  L  E  P  C  F  M  L  L  P  R  N  P  F  L  L  L  H  Q  K  L  *  H  E  A  L  F  G  V  Y  P  F  L  Y  F  S  E  C  T  P  Q  *  L  N  P  L  K  L  C  K  E  N  I  I  R  A  W  T  N  A  *  C  I  F  H  Y  Y  S  Q  K  M  E  G  E  I  L  Y  R  I  L  C  Q  M  V  S  P  S  I  I  K  L  K  L  A  F  S  S  S  K  E  P  *  L  L  G  L  R  F  N  *  S  Q  M  F  *  Y  R  E  A  L  L  G  Q  L  V  I  C  V  K  L  T  L  K  G  R  A  V  P  N  G  N  L  R  S  L  Q  K  I  Y  T :   C  C  P  C  *  I  H  T  L  I  Q  V  T  F  T  K  A  T  R  Q  F  L  V  L  H  M  T  R  W  S  N  N  C  Q  R  L  V  T  C  </first_frame>
            <second_frame>  A  H  K  R  W  V  A  R  *  Y  G  S  S  L  C  W  F  F  K  G  *  G  R  F  K  *  T  G  *  C  F  T  V  A  A  G  *  I  *  M  C  S  C  F  S  T  S  R  H  F  I  *  I  L  S  R  F  L  Q  T  A  F  M  A  S  F  P  L  Y  A  S  L  L  C  *  S  W  Q  S  I  *  S  V  V  V  G  G  I  C  C  S  K  Q  D  I  F  P  E  G  Y  *  G  D  K  S  R  G  *  L  C  L  D  P  *  L  S  F  N  G  F  T  Y  I  L  A  *  A  F  Q  S  A  A  N  G  V  L  S  A  *  P  F  P  F  I  R  D  I  *  D  A  S  S  E  R  G  D  S  Q  G  P  T  E  F  *  P  D  W  F  P  Y  V  R  L  C  T  A  F  P  I  L  L  *  S  H  V  G  I  R  V  S  V  K  E  G  L  H  W  T  *  I  L  R  T  D  S  G  D  Q  D  Y  A  S  W  D  S  H  E  A  D  *  K  C  A  S  T  S  R  *  R  V  E  S  C  R  T  *  A  T  I  *  R  *  N  C  F  T  W  C  *  *  Y  G  H  F  Q  R  C  R  F  E  T  S  G  I  G  G  N  V  K  T  T  S  *  V  A  R  K  S  S  A  G  P  D  C  *  S  S  S  S  K  R  K  R  Y  *  G  N  T  R  R  N  S  N  K  R  Q  E  N  Q  *  Q  V  *  T  A  W  L  *  T  H  R  V  H  *  S  P  S  F  S  *  *  T  D  C  L  L  L  C  C  *  V  C  S  C  N  C  S  K  R  W  H  E  P  Y  T  I  *  I  R  C  V  *  A  G  H  P  R  F  R  V  H  C  R  V  Q  W  S  E  K  Q  H  A  G  S  V  *  V  H  W  L  F  S  F  S  K  W  C  Y  T  C  E  P  M  E  C  G  S  N  C  R  S  T  E  *  G  N  F  N  G  *  W  *  E  G  V  A  P  *  E  A  L  Q  V  C  K  H  T  *  R  S  L  L  V  K  K  L  L  P  G  S  G  E  K  L  Q  R  P  F  Q  A  T  L  L  G  Y  R  L  E  L  R  F  *  G  C  S  T  *  S  *  F  *  K  A  I  H  *  H  Y  C  F  C  L  L  K  S  Q  K  S  G  N  I  V  G  L  *  W  H  S  H  A  S  N  S  H  Q  *  G  P  *  S  R  S  Y  F  N  Y  *  L  T  L  W  G  *  K  K  Y  R  V  S  C  E  W  T  R  K  G  *  F  R  P  V  V  F  S  V  *  E  T  W  Y  C  C  G  T  R  I  L  L  K  :  V  V  C  R  *  R  M  G  S  R  R  A  E  Q  *  F  P  V  D  A  D  S  *  T  C  Y  E  T  V  Y  R  S  Y  R  W  V  F  H  *  N  K  R  E  C  C  C  L  A  L  S  R  C  R  S  W  F  W  V  L  P  S  *  R  D  V  R  P  S  *  E  C  S  C  K  *  A  C  C  C  E  E  W  A  V  H  C  *  S  *  A  S   : G  S  *  *  R  S  S  C  R  E  N  F  C  N  N  G  *  E  W  P  A  G  *  L  C  A  V  R  R  *  *  *  V  *  R  G  H  V  *  D  Y  W  K  C  N  K  *  W  Y  T  F  F  K  H  G  S  V  C  L  H  S  G  T  K  A  K  *  S  H  I  L  S  *  *  H  R  R  S  *  N  H  A  S  C  S  C  R  G  I  H  S  S  S  S  I  R  N  C  N  M  K  L  C  L  E  Y  I  L  F  C  T  S  L  S  A  H  H  N  D  S  T  L  *  S  C  A  K  K  I  S  L  E  L  G  L  T  H  D  A  Y  F  I  I  T  L  K  K  W  K  E  R  Y  C  T  E  F  F  V  R  W  S  V  R  A  S  S  S  *  N  *  P  S  L  L  R  K  N  L  N  S  W  G  *  D  L  T  D  P  K  C  F  N  T  E  K  H  C  S  A  S  W  L  Y  V  *  S  *  H  *  R  G  E  Q  C  Q  M  V  I  F  V  A  F  R  K  Y  I   : R  A  A  L  V  E  Y  I  L  L  F  K  L  L  L  R  R  P  H  V  S  F  L  S  C  I  *  Q  D  G  A  T  I  V  K  D  S  *  P  A </second_frame>
            <third_frame>   H  I  K  D  G  L  P  D  D  M  E  V  L  Y  V  G  S  L  K  V  E  V  D  S  S  E  Q  D  D  V  S  Q  L  L  L  D  R  F  K  C  V  P  A  F  L  P  P  D  I  L  S  K  Y  Y  H  G  F  C  K  Q  H  L  W  P  L  F  H  Y  M  L  P  Y  S  A  S  H  G  S  R  F  D  R  S  W  W  E  A  Y  V  A  A  N  K  I  F  S  Q  K  V  I  E  V  I  N  P  E  D  D  Y  V  W  I  H  D  Y  H  L  M  V  L  P  T  F  L  R  R  R  F  N  R  L  R  M  G  F  F  L  H  S  P  F  P  S  S  E  I  Y  R  T  L  P  V  R  E  E  I  L  K  A  L  L  N  S  D  L  I  G  F  H  T  F  D  Y  A  R  H  F  L  S  C  C  S  R  M  L  G  L  E  Y  Q  S  K  R  G  Y  I  G  L  E  Y  F  G  R  T  V  G  I  K  I  M  P  V  G  I  H  M  R  Q  I  E  N  V  L  Q  L  A  D  K  E  S  R  V  A  E  L  K  Q  Q  F  E  G  K  T  V  L  L  G  V  D  D  M  D  I  F  K  G  V  D  L  K  L  L  A  L  E  E  M  L  K  Q  H  P  K  W  Q  G  R  A  V  L  V  Q  I  A  N  P  A  R  A  K  G  K  D  I  E  E  I  Q  E  E  I  Q  T  S  V  K  R  I  N  D  K  F  R  Q  P  G  Y  E  P  I  V  F  I  D  R  P  V  S  L  S  E  R  T  A  Y  Y  S  V  A  E  C  V  V  V  T  A  V  R  D  G  M  N  L  T  P  Y  E  Y  V  V  C  R  Q  G  I  P  G  S  E  C  T  A  E  S  N  G  L  K  S  S  M  L  V  V  S  E  F  I  G  C  S  P  S  L  S  G  A  I  R  V  N  P  W  N  V  E  A  T  A  E  A  L  N  E  A  I  S  M  A  D  G  E  K  V  L  R  H  E  K  H  Y  K  Y  V  S  T  H  D  V  A  Y  W  S  R  S  F  F  Q  D  L  E  R  S  C  R  D  H  F  R  R  R  C  W  G  I  G  L  S  F  G  F  R  V  V  A  L  D  P  N  F  K  K  L  S  I  D  T  I  V  S  A  Y  S  R  A  K  N  R  A  I  L  L  D  Y  D  G  T  L  M  P  Q  T  A  I  N  K  V  P  S  P  E  V  I  S  I  I  N  S  L  C  G  D  E  R  N  T  V  F  L  V  S  G  R  G  R  D  S  L  G  Q  W  F  S  P  C  E  K  L  G  I  A  A  E  H  G  Y  F  L  R :   W  S  A  D  K  E  W  E  V  V  G  Q  N  N  D  F  Q  W  M  Q  I  A  E  P  V  M  K  Q  Y  T  E  A  T  D  G  S  S  I  E  T  K  E  S  A  V  V  W  H  Y  R  D  A  D  L  G  F  G  S  C  Q  A  K  E  M  L  D  H  L  E  S  V  L  A  N  E  P  V  A  V  K  S  G  Q  F  I  V  E  V  K  P  Q  :  G  V  S  K  G  L  V  A  E  K  I  F  A  T  M  A  E  S  G  R  Q  A  D  F  V  L  C  V  G  D  D  R  S  D  E  D  M  F  E  I  I  G  N  A  I  N  S  G  I  L  S  S  S  T  E  V  Y  A  C  T  V  G  Q  K  P  S  K  A  T  Y  Y  L  D  D  T  A  E  V  R  T  M  L  H  A  L  A  E  E  S  I  P  P  P  P  S  E  I  V  T  *  S  S  V  W  S  I  S  F  S  V  L  L  *  V  H  T  T  M  T  Q  P  F  E  V  V  Q  R  K  Y  H  *  S  L  D  *  R  M  M  H  I  S  L  L  L  S  K  N  G  R  R  D  I  V  Q  N  S  L  S  D  G  Q  S  E  H  H  Q  A  K  I  S  L  L  F  F  E  R  T  L  T  P  G  V  E  I  *  L  I  P  N  V  L  I  P  R  S  I  A  R  P  A  G  Y  M  C  E  V  D  T  E  G  E  S  S  A  K  W  *  S  S  *  P  S  E  N  I  Y  :  V  L  P  L  L  N  T  Y  S  Y  S  S  Y  F  Y  E  G  H  T  S  V  S  C  L  A  Y  D  K  M  E  Q  Q  L  S  K  T  R  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6100" stop="7805"/>
                    <exon start="7893" stop="8166"/>
                    <exon start="9141" stop="9440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2277</number_coding_nucleotides>
                  <number_encoded_amino_acids>759</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIKDGLPDDMEVLYVGSLKVEVDSSEQDDVSQLLLDRFKCVPAFLPPDILSKYYHGFCKQHLWPLFHYMLPYSASHGSRFDRSWWEAYVAANKIFSQKVIEVINPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMRQIENVLQLADKESRVAELKQQFEGKTVLLGVDDMDIFKGVDLKLLALEEMLKQHPKWQGRAVLVQIANPARAKGKDIEEIQEEIQTSVKRINDKFRQPGYEPIVFIDRPVSLSERTAYYSVAECVVVTAVRDGMNLTPYEYVVCRQGIPGSECTAESNGLKSSMLVVSEFIGCSPSLSGAIRVNPWNVEATAEALNEAISMADGEKVLRHEKHYKYVSTHDVAYWSRSFFQDLERSCRDHFRRRCWGIGLSFGFRVVALDPNFKKLSIDTIVSAYSRAKNRAILLDYDGTLMPQTAINKVPSPEVISIINSLCGDERNTVFLVSGRGRDSLGQWFSPCEKLGIAAEHGYFLRWSADKEWEVVGQNNDFQWMQIAEPVMKQYTEATDGSSIETKESAVVWHYRDADLGFGSCQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFATMAESGRQADFVLCVGDDRSDEDMFEIIGNAINSGILSSSTEVYACTVGQKPSKATYYLDDTAEVRTMLHALAEESIPPPPSEIVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8427" e_stop="10398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="8427" e_stop="10398" e_length="1972"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8427" stop="8892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8428" stop="9163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8428" stop="8770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9161" stop="9765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9322" stop="9800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9355" stop="9941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9423" stop="10116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9725" stop="10173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10093" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATTAAAAGCTGCTTCAATCAAATATATGCAATTTTTTCAAATCTGTCATATTTCATGGAAGTAATTAAAGGTGATGGTTGAAATATTTTTGGAGTTTGGTGTTTAATCTATGAAGATTTTTGGTACTGTAAGCCAAGATAGTGCAACTGTCAGTTTGGACGAAGTCAAACAGATGATAATCACTCAGATGGTGCATGTTAAAATATCTTAATCAATTGCAAGGAGTTTTAGAACAGAAAAAAGTAGACACCTTCTTGTCCTTTTTGGTTCTGTTTGTCATATTGAAGCCATGCATGAGATTTTGCCAAGTTACTGTTGGTTTGATTCATGAATTCTGATAAATTATTACAAACAACTGCAGCAAATAACTTTTTATTCGTTAGATTTATGCCTTGATTAAATAACTAAGTACTTCCAGCATAATGCCAAACAGGTAGGGAATATATTACTCATTTCTTAATAACAAGAACAGAAACAACTACTTTCCTGATACATGTACTTTTCAGTTCTCAACAGAATGTGAGCGCCAGAAAATTTTAGTTAATTATATTGTTGAATAGGATGGCTCGTATGCTTTCCTAAATAGTCTTCTTGTTATAGCTGTATTCTCTTTTCTACCTGTTTTATCTCATACACATCCATGTGGCCTTTTTTGTTTTCTTTTGCCGCCTCGAGTTTATTTTTAACTTTATTTTTTGCATCAATTCCAGGGAGTTAGTAAAGGTCTAGTTGCAGAGAAAATTTTTGCAACAATGGCTGAGAGTGGCCGGCAGGCTGACTTTGTGCTGTGCGTAGGTGATGATAGGTCTGACGAGGACATGTTTGAGATTATTGGAAATGCAATAAATAGTGGTATACTTTCTTCAAGCACGGAAGTGTATGCTTGCACAGTGGGACAAAAGCCAAGTAAAGCCACATATTATCTTGATGACACCGCAGAAGTTAGAACCATGCTTCATGCTCTTGCCGAGGAATCCATTCCTCCTCCTCCATCAGAAATTGTAACATGAAGCTCTGTTTGGAGTATATCCTTTTCTGTACTTCTCTGAGTGCACACCACAATGACTCAACCCTTTGAAGTTGTGCAAAGAAAATATCATTAGAGCTTGGACTAACGCATGATGCATATTTCATTATTACTCTCAAAAAATGGAAGGAGAGATATTGTACAGAATTCTTTGTCAGATGGTCAGTCCGAGCATCATCAAGCTAAAATTAGCCTTCTCTTCTTCGAAAGAACCTTAACTCCTGGGGTTGAGATTTAACTGATCCCAAATGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGCAGTGCCAAATGGTAATCTTCGTAGCCTTCAGAAAATATATACGCAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATACATCTGTGCTGCCCTTGTTGAATACATACTCTTATTCAAGTTACTTTTACGAAGGCCACACGTCAGTTTCTTGTCTTGCATATGACAAGATGGAGCAACAATTGTCAAAGACTCGTAACCTGCATTGTTAGATCAACTGTGAACAGGTGTTTTTTCTTCTCTTTTGCTTCATTTATTTAAGGATTCCTTCTTTTGCATCTAGGAGTGAGGTTATTATTGTTGTTGGGATACACCAATTTGTTGGATTCTCATAATTGTAAATGCTATAGAATTTTACCTTCTCTTTTCTTCCTTGTGATAGAGTTCCTAAACTAAATTTCGTAAGCTAGAACATGACAAAAAAAAACCAGGTGATTGTTAATAGTGACATCAATTATTCTTGGTCTTTCAAGTGGTAGTTTGCAGAACAAACATTTGATTCCTAATATTTGTAATATAAAGGTGGAAGTTTATATCTAGCTTTGTGAGCATCAAGCTGCTTTTTAATTCTTTCTTAAACCAGTCCT</gDNA_template>
            <first_frame> R  H  *  K  L  L  Q  S  N  I  C  N  F  F  K  S  V  I  F  H  G  S  N  *  R  *  W  L  K  Y  F  W  S  L  V  F  N  L  *  R  F  L  V  L  *  A  K  I  V  Q  L  S  V  W  T  K  S  N  R  *  *  S  L  R  W  C  M  L  K  Y  L  N  Q  L  Q  G  V  L  E  Q  K  K  V  D  T  F  L  S  F  L  V  L  F  V  I  L  K  P  C  M  R  F  C  Q  V  T  V  G  L  I  H  E  F  *  *  I  I  T  N  N  C  S  K  *  L  F  I  R  *  I  Y  A  L  I  K  *  L  S  T  S  S  I  M  P  N  R  *  G  I  Y  Y  S  F  L  N  N  K  N  R  N  N  Y  F  P  D  T  C  T  F  Q  F  S  T  E  C  E  R  Q  K  I  L  V  N  Y  I  V  E  *  D  G  S  Y  A  F  L  N  S  L  L  V  I  A  V  F  S  F  L  P  V  L  S  H  T  H  P  C  G  L  F  C  F  L  L  P  P  R  V  Y  F  *  L  Y  F  L  H  Q  F  Q  G  V  S  K  G  L  V  A  E  K  I  F  A  T  M  A  E  S  G  R  Q  A  D  F  V  L  C  V  G  D  D  R  S  D  E  D  M  F  E  I  I  G  N  A  I  N  S  G  I  L  S  S  S  T  E  V  Y  A  C  T  V  G  Q  K  P  S  K  A  T  Y  Y  L  D  D  T  A  E  V  R  T  M  L  H  A  L  A  E  E  S  I  P  P  P  P  S  E  I  V  T  *  S  S  V  W  S  I  S  F  S  V  L  L  *  V  H  T  T  M  T  Q  P  F  E  V  V  Q  R  K  Y  H  *  S  L  D  *  R  M  M  H  I  S  L  L  L  S  K  N  G  R  R  D  I  V  Q  N  S  L  S  D  G  Q  S  E  H  H  Q  A  K  I  S  L  L  F  F  E  R  T  L  T  P  G  V  E  I  *  L  I  P  N  V  L  I  P  R  S  I  A  R  P  A  G  Y  M  C  E  V  D  T  E  G  E  S  S  A  K  W  *  S  S  *  P  S  E  N  I  Y  A  R  D  S  *  N  G  R  G  K  *  S  F  C  T  F  S  L  I  H  E  Q  D  L  Y  I  C  A  A  L  V  E  Y  I  L  L  F  K  L  L  L  R  R  P  H  V  S  F  L  S  C  I  *  Q  D  G  A  T  I  V  K  D  S  *  P  A  L  L  D  Q  L  *  T  G  V  F  S  S  L  L  L  H  L  F  K  D  S  F  F  C  I  *  E  *  G  Y  Y  C  C  W  D  T  P  I  C  W  I  L  I  I  V  N  A  I  E  F  Y  L  L  F  S  S  L  *  *  S  S  *  T  K  F  R  K  L  E  H  D  K  K  K  P  G  D  C  *  *  *  H  Q  L  F  L  V  F  Q  V  V  V  C  R  T  N  I  *  F  L  I  F  V  I  *  R  W  K  F  I  S  S  F  V  S  I  K  L  L  F  N  S  F  L  N  Q  S  </first_frame>
            <second_frame>  D  I  K  S  C  F  N  Q  I  Y  A  I  F  S  N  L  S  Y  F  M  E  V  I  K  G  D  G  *  N  I  F  G  V  W  C  L  I  Y  E  D  F  W  Y  C  K  P  R  *  C  N  C  Q  F  G  R  S  Q  T  D  D  N  H  S  D  G  A  C  *  N  I  L  I  N  C  K  E  F  *  N  R  K  K  *  T  P  S  C  P  F  W  F  C  L  S  Y  *  S  H  A  *  D  F  A  K  L  L  L  V  *  F  M  N  S  D  K  L  L  Q  T  T  A  A  N  N  F  L  F  V  R  F  M  P  *  L  N  N  *  V  L  P  A  *  C  Q  T  G  R  E  Y  I  T  H  F  L  I  T  R  T  E  T  T  T  F  L  I  H  V  L  F  S  S  Q  Q  N  V  S  A  R  K  F  *  L  I  I  L  L  N  R  M  A  R  M  L  S  *  I  V  F  L  L  *  L  Y  S  L  F  Y  L  F  Y  L  I  H  I  H  V  A  F  F  V  F  F  C  R  L  E  F  I  F  N  F  I  F  C  I  N  S  R  E  L  V  K  V  *  L  Q  R  K  F  L  Q  Q  W  L  R  V  A  G  R  L  T  L  C  C  A  *  V  M  I  G  L  T  R  T  C  L  R  L  L  E  M  Q  *  I  V  V  Y  F  L  Q  A  R  K  C  M  L  A  Q  W  D  K  S  Q  V  K  P  H  I  I  L  M  T  P  Q  K  L  E  P  C  F  M  L  L  P  R  N  P  F  L  L  L  H  Q  K  L  *  H  E  A  L  F  G  V  Y  P  F  L  Y  F  S  E  C  T  P  Q  *  L  N  P  L  K  L  C  K  E  N  I  I  R  A  W  T  N  A  *  C  I  F  H  Y  Y  S  Q  K  M  E  G  E  I  L  Y  R  I  L  C  Q  M  V  S  P  S  I  I  K  L  K  L  A  F  S  S  S  K  E  P  *  L  L  G  L  R  F  N  *  S  Q  M  F  *  Y  R  E  A  L  L  G  Q  L  V  I  C  V  K  L  T  L  K  G  R  A  V  P  N  G  N  L  R  S  L  Q  K  I  Y  T  Q  E  T  H  R  M  A  E  A  N  R  A  F  A  H  F  R  *  S  M  N  R  I  Y  T  S  V  L  P  L  L  N  T  Y  S  Y  S  S  Y  F  Y  E  G  H  T  S  V  S  C  L  A  Y  D  K  M  E  Q  Q  L  S  K  T  R  N  L  H  C  *  I  N  C  E  Q  V  F  F  L  L  F  C  F  I  Y  L  R  I  P  S  F  A  S  R  S  E  V  I  I  V  V  G  I  H  Q  F  V  G  F  S  *  L  *  M  L  *  N  F  T  F  S  F  L  P  C  D  R  V  P  K  L  N  F  V  S  *  N  M  T  K  K  N  Q  V  I  V  N  S  D  I  N  Y  S  W  S  F  K  W  *  F  A  E  Q  T  F  D  S  *  Y  L  *  Y  K  G  G  S  L  Y  L  A  L  *  A  S  S  C  F  L  I  L  S  *  T  S  P </second_frame>
            <third_frame>   T  L  K  A  A  S  I  K  Y  M  Q  F  F  Q  I  C  H  I  S  W  K  *  L  K  V  M  V  E  I  F  L  E  F  G  V  *  S  M  K  I  F  G  T  V  S  Q  D  S  A  T  V  S  L  D  E  V  K  Q  M  I  I  T  Q  M  V  H  V  K  I  S  *  S  I  A  R  S  F  R  T  E  K  S  R  H  L  L  V  L  F  G  S  V  C  H  I  E  A  M  H  E  I  L  P  S  Y  C  W  F  D  S  *  I  L  I  N  Y  Y  K  Q  L  Q  Q  I  T  F  Y  S  L  D  L  C  L  D  *  I  T  K  Y  F  Q  H  N  A  K  Q  V  G  N  I  L  L  I  S  *  *  Q  E  Q  K  Q  L  L  S  *  Y  M  Y  F  S  V  L  N  R  M  *  A  P  E  N  F  S  *  L  Y  C  *  I  G  W  L  V  C  F  P  K  *  S  S  C  Y  S  C  I  L  F  S  T  C  F  I  S  Y  T  S  M  W  P  F  L  F  S  F  A  A  S  S  L  F  L  T  L  F  F  A  S  I  P  G  S  *  *  R  S  S  C  R  E  N  F  C  N  N  G  *  E  W  P  A  G  *  L  C  A  V  R  R  *  *  *  V  *  R  G  H  V  *  D  Y  W  K  C  N  K  *  W  Y  T  F  F  K  H  G  S  V  C  L  H  S  G  T  K  A  K  *  S  H  I  L  S  *  *  H  R  R  S  *  N  H  A  S  C  S  C  R  G  I  H  S  S  S  S  I  R  N  C  N  M  K  L  C  L  E  Y  I  L  F  C  T  S  L  S  A  H  H  N  D  S  T  L  *  S  C  A  K  K  I  S  L  E  L  G  L  T  H  D  A  Y  F  I  I  T  L  K  K  W  K  E  R  Y  C  T  E  F  F  V  R  W  S  V  R  A  S  S  S  *  N  *  P  S  L  L  R  K  N  L  N  S  W  G  *  D  L  T  D  P  K  C  F  N  T  E  K  H  C  S  A  S  W  L  Y  V  *  S  *  H  *  R  G  E  Q  C  Q  M  V  I  F  V  A  F  R  K  Y  I  R  K  R  L  I  E  W  Q  R  Q  I  E  L  L  H  I  F  V  N  P  *  T  G  S  I  H  L  C  C  P  C  *  I  H  T  L  I  Q  V  T  F  T  K  A  T  R  Q  F  L  V  L  H  M  T  R  W  S  N  N  C  Q  R  L  V  T  C  I  V  R  S  T  V  N  R  C  F  F  F  S  F  A  S  F  I  *  G  F  L  L  L  H  L  G  V  R  L  L  L  L  L  G  Y  T  N  L  L  D  S  H  N  C  K  C  Y  R  I  L  P  S  L  F  F  L  V  I  E  F  L  N  *  I  S  *  A  R  T  *  Q  K  K  T  R  *  L  L  I  V  T  S  I  I  L  G  L  S  S  G  S  L  Q  N  K  H  L  I  P  N  I  C  N  I  K  V  E  V  Y  I  *  L  C  E  H  Q  A  A  F  *  F  F  L  K  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9117" stop="9440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYFLHQFQGVSKGLVAEKIFATMAESGRQADFVLCVGDDRSDEDMFEIIGNAINSGILSSSTEVYACTVGQKPSKATYYLDDTAEVRTMLHALAEESIPPPPSEIVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="6098" e_stop="7977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6098" e_stop="7977" e_length="1880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6098" stop="6595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6223" stop="6791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6291" stop="6878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6291" stop="6706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6555" stop="7339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7266" stop="7800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7326" stop="7977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7459" stop="7800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCACATAAAAGATGGGTTGCCAGATGATATGGAAGTTCTCTATGTTGGTTCTTTAAAGGTTGAGGTCGATTCAAGTGAACAGGATGATGTTTCACAGTTGCTGCTGGATAGATTTAAATGTGTTCCTGCTTTTCTACCTCCAGACATTTTATCTAAATATTATCACGGTTTTTGCAAACAGCATTTATGGCCTCTTTTCCATTATATGCTTCCCTACTCTGCTAGTCATGGCAGTCGATTTGATCGGTCGTGGTGGGAGGCATATGTTGCAGCAAACAAGATATTTTCCCAGAAGGTTATTGAGGTGATAAATCCCGAGGATGACTATGTCTGGATCCATGATTATCATTTAATGGTTTTACCTACATTCTTGCGTAGGCGTTTCAATCGGCTGCGAATGGGGTTCTTTCTGCATAGCCCTTTCCCTTCATCAGAGATATATAGGACGCTTCCAGTGAGAGAGGAGATTCTCAAGGCCCTACTGAATTCTGACCTGATTGGTTTCCATACGTTCGATTATGCACGGCATTTCCTATCCTGTTGTAGTCGCATGTTGGGATTAGAGTATCAGTCAAAGAGGGGTTACATTGGACTTGAATACTTCGGACGGACAGTGGGGATCAAGATTATGCCAGTTGGGATTCACATGAGGCAGATTGAAAATGTGCTTCAACTAGCAGATAAAGAGTCGAGAGTTGCAGAACTTAAGCAACAATTTGAAGGTAAAACTGTTTTACTTGGTGTTGATGATATGGACATTTTCAAAGGTGTCGATTTGAAACTTCTGGCATTGGAGGAAATGTTAAAACAACATCCTAAGTGGCAAGGAAGAGCAGTGCTGGTCCAGATTGCTAATCCAGCTCGAGCAAAAGGAAAAGATATTGAGGAAATACAAGAAGAAATTCAAACAAGCGTCAAGAGAATCAATGACAAGTTTAGACAGCCTGGTTATGAACCCATCGTGTTCATTGATCGCCCAGTTTCTCTTAGTGAACGGACTGCCTATTACTCTGTTGCTGAGTGTGTAGTTGTAACTGCAGTAAGAGATGGCATGAACCTTACACCATATGAATACGTTGTGTGTAGGCAGGGCATCCCCGGTTCAGAGTGCACTGCAGAGTCCAATGGTCTGAAAAGCAGCATGCTGGTAGTGTCTGAGTTCATTGGCTGTTCTCCTTCTCTAAGTGGTGCTATACGTGTGAACCCATGGAATGTGGAAGCAACTGCAGAAGCACTGAATGAGGCAATTTCAATGGCTGATGGTGAGAAGGTGTTGCGCCATGAGAAGCATTACAAGTATGTAAGCACACATGACGTAGCTTATTGGTCAAGAAGCTTCTTCCAGGATCTGGAGAGAAGTTGCAGAGACCATTTCAGGCGACGTTGCTGGGGTATAGGCTTGAGCTTCGGTTTTAGGGTTGTAGCACTTGATCCTAATTTTAAAAAGCTATCCATTGACACTATTGTTTCTGCTTACTCAAGAGCCAAAAATCGGGCAATATTGTTGGATTATGATGGCACTCTCATGCCTCAAACAGCCATCAATAAGGTCCCTAGTCCCGAAGTTATTTCAATTATTAACTCACTTTGTGGGGATGAAAGAAATACCGTGTTTCTTGTGAGTGGACGAGGAAGGGATAGTTTAGGCCAGTGGTTTTCTCCGTGTGAGAAACTTGGTATTGCTGCGGAACACGGATACTTCTTAAGGTATTCTTGGAACAAGCTTGTTCTCATTTCGTGCCTATTTGTCATCTCCCGTATATCAGTATGAACTTAATTGTCTTTAATTACCAGGTGGTCTGCAGATAAAGAATGGGAAGTCGTAGGGCAGAACAATGATTTCCAGTGGATGCAGATAGCTGAACCTGTTATGAAACAG</gDNA_template>
            <first_frame> C  T  *  K  M  G  C  Q  M  I  W  K  F  S  M  L  V  L  *  R  L  R  S  I  Q  V  N  R  M  M  F  H  S  C  C  W  I  D  L  N  V  F  L  L  F  Y  L  Q  T  F  Y  L  N  I  I  T  V  F  A  N  S  I  Y  G  L  F  S  I  I  C  F  P  T  L  L  V  M  A  V  D  L  I  G  R  G  G  R  H  M  L  Q  Q  T  R  Y  F  P  R  R  L  L  R  *  *  I  P  R  M  T  M  S  G  S  M  I  I  I  *  W  F  Y  L  H  S  C  V  G  V  S  I  G  C  E  W  G  S  F  C  I  A  L  S  L  H  Q  R  Y  I  G  R  F  Q  *  E  R  R  F  S  R  P  Y  *  I  L  T  *  L  V  S  I  R  S  I  M  H  G  I  S  Y  P  V  V  V  A  C  W  D  *  S  I  S  Q  R  G  V  T  L  D  L  N  T  S  D  G  Q  W  G  S  R  L  C  Q  L  G  F  T  *  G  R  L  K  M  C  F  N  *  Q  I  K  S  R  E  L  Q  N  L  S  N  N  L  K  V  K  L  F  Y  L  V  L  M  I  W  T  F  S  K  V  S  I  *  N  F  W  H  W  R  K  C  *  N  N  I  L  S  G  K  E  E  Q  C  W  S  R  L  L  I  Q  L  E  Q  K  E  K  I  L  R  K  Y  K  K  K  F  K  Q  A  S  R  E  S  M  T  S  L  D  S  L  V  M  N  P  S  C  S  L  I  A  Q  F  L  L  V  N  G  L  P  I  T  L  L  L  S  V  *  L  *  L  Q  *  E  M  A  *  T  L  H  H  M  N  T  L  C  V  G  R  A  S  P  V  Q  S  A  L  Q  S  P  M  V  *  K  A  A  C  W  *  C  L  S  S  L  A  V  L  L  L  *  V  V  L  Y  V  *  T  H  G  M  W  K  Q  L  Q  K  H  *  M  R  Q  F  Q  W  L  M  V  R  R  C  C  A  M  R  S  I  T  S  M  *  A  H  M  T  *  L  I  G  Q  E  A  S  S  R  I  W  R  E  V  A  E  T  I  S  G  D  V  A  G  V  *  A  *  A  S  V  L  G  L  *  H  L  I  L  I  L  K  S  Y  P  L  T  L  L  F  L  L  T  Q  E  P  K  I  G  Q  Y  C  W  I  M  M  A  L  S  C  L  K  Q  P  S  I  R  S  L  V  P  K  L  F  Q  L  L  T  H  F  V  G  M  K  E  I  P  C  F  L  *  V  D  E  E  G  I  V  *  A  S  G  F  L  R  V  R  N  L  V  L  L  R  N  T  D  T  S  *  G  I  L  G  T  S  L  F  S  F  R  A  Y  L  S  S  P  V  Y  Q  Y  E  L  N  C  L  *  L  P  G  G  L  Q  I  K  N  G  K  S  *  G  R  T  M  I  S  S  G  C  R  *  L  N  L  L  *  N   </first_frame>
            <second_frame>  A  H  K  R  W  V  A  R  *  Y  G  S  S  L  C  W  F  F  K  G  *  G  R  F  K  *  T  G  *  C  F  T  V  A  A  G  *  I  *  M  C  S  C  F  S  T  S  R  H  F  I  *  I  L  S  R  F  L  Q  T  A  F  M  A  S  F  P  L  Y  A  S  L  L  C  *  S  W  Q  S  I  *  S  V  V  V  G  G  I  C  C  S  K  Q  D  I  F  P  E  G  Y  *  G  D  K  S  R  G  *  L  C  L  D  P  *  L  S  F  N  G  F  T  Y  I  L  A  *  A  F  Q  S  A  A  N  G  V  L  S  A  *  P  F  P  F  I  R  D  I  *  D  A  S  S  E  R  G  D  S  Q  G  P  T  E  F  *  P  D  W  F  P  Y  V  R  L  C  T  A  F  P  I  L  L  *  S  H  V  G  I  R  V  S  V  K  E  G  L  H  W  T  *  I  L  R  T  D  S  G  D  Q  D  Y  A  S  W  D  S  H  E  A  D  *  K  C  A  S  T  S  R  *  R  V  E  S  C  R  T  *  A  T  I  *  R  *  N  C  F  T  W  C  *  *  Y  G  H  F  Q  R  C  R  F  E  T  S  G  I  G  G  N  V  K  T  T  S  *  V  A  R  K  S  S  A  G  P  D  C  *  S  S  S  S  K  R  K  R  Y  *  G  N  T  R  R  N  S  N  K  R  Q  E  N  Q  *  Q  V  *  T  A  W  L  *  T  H  R  V  H  *  S  P  S  F  S  *  *  T  D  C  L  L  L  C  C  *  V  C  S  C  N  C  S  K  R  W  H  E  P  Y  T  I  *  I  R  C  V  *  A  G  H  P  R  F  R  V  H  C  R  V  Q  W  S  E  K  Q  H  A  G  S  V  *  V  H  W  L  F  S  F  S  K  W  C  Y  T  C  E  P  M  E  C  G  S  N  C  R  S  T  E  *  G  N  F  N  G  *  W  *  E  G  V  A  P  *  E  A  L  Q  V  C  K  H  T  *  R  S  L  L  V  K  K  L  L  P  G  S  G  E  K  L  Q  R  P  F  Q  A  T  L  L  G  Y  R  L  E  L  R  F  *  G  C  S  T  *  S  *  F  *  K  A  I  H  *  H  Y  C  F  C  L  L  K  S  Q  K  S  G  N  I  V  G  L  *  W  H  S  H  A  S  N  S  H  Q  *  G  P  *  S  R  S  Y  F  N  Y  *  L  T  L  W  G  *  K  K  Y  R  V  S  C  E  W  T  R  K  G  *  F  R  P  V  V  F  S  V  *  E  T  W  Y  C  C  G  T  R  I  L  L  K  V  F  L  E  Q  A  C  S  H  F  V  P  I  C  H  L  P  Y  I  S  M  N  L  I  V  F  N  Y  Q  V  V  C  R  *  R  M  G  S  R  R  A  E  Q  *  F  P  V  D  A  D  S  *  T  C  Y  E  T  </second_frame>
            <third_frame>   H  I  K  D  G  L  P  D  D  M  E  V  L  Y  V  G  S  L  K  V  E  V  D  S  S  E  Q  D  D  V  S  Q  L  L  L  D  R  F  K  C  V  P  A  F  L  P  P  D  I  L  S  K  Y  Y  H  G  F  C  K  Q  H  L  W  P  L  F  H  Y  M  L  P  Y  S  A  S  H  G  S  R  F  D  R  S  W  W  E  A  Y  V  A  A  N  K  I  F  S  Q  K  V  I  E  V  I  N  P  E  D  D  Y  V  W  I  H  D  Y  H  L  M  V  L  P  T  F  L  R  R  R  F  N  R  L  R  M  G  F  F  L  H  S  P  F  P  S  S  E  I  Y  R  T  L  P  V  R  E  E  I  L  K  A  L  L  N  S  D  L  I  G  F  H  T  F  D  Y  A  R  H  F  L  S  C  C  S  R  M  L  G  L  E  Y  Q  S  K  R  G  Y  I  G  L  E  Y  F  G  R  T  V  G  I  K  I  M  P  V  G  I  H  M  R  Q  I  E  N  V  L  Q  L  A  D  K  E  S  R  V  A  E  L  K  Q  Q  F  E  G  K  T  V  L  L  G  V  D  D  M  D  I  F  K  G  V  D  L  K  L  L  A  L  E  E  M  L  K  Q  H  P  K  W  Q  G  R  A  V  L  V  Q  I  A  N  P  A  R  A  K  G  K  D  I  E  E  I  Q  E  E  I  Q  T  S  V  K  R  I  N  D  K  F  R  Q  P  G  Y  E  P  I  V  F  I  D  R  P  V  S  L  S  E  R  T  A  Y  Y  S  V  A  E  C  V  V  V  T  A  V  R  D  G  M  N  L  T  P  Y  E  Y  V  V  C  R  Q  G  I  P  G  S  E  C  T  A  E  S  N  G  L  K  S  S  M  L  V  V  S  E  F  I  G  C  S  P  S  L  S  G  A  I  R  V  N  P  W  N  V  E  A  T  A  E  A  L  N  E  A  I  S  M  A  D  G  E  K  V  L  R  H  E  K  H  Y  K  Y  V  S  T  H  D  V  A  Y  W  S  R  S  F  F  Q  D  L  E  R  S  C  R  D  H  F  R  R  R  C  W  G  I  G  L  S  F  G  F  R  V  V  A  L  D  P  N  F  K  K  L  S  I  D  T  I  V  S  A  Y  S  R  A  K  N  R  A  I  L  L  D  Y  D  G  T  L  M  P  Q  T  A  I  N  K  V  P  S  P  E  V  I  S  I  I  N  S  L  C  G  D  E  R  N  T  V  F  L  V  S  G  R  G  R  D  S  L  G  Q  W  F  S  P  C  E  K  L  G  I  A  A  E  H  G  Y  F  L  R  Y  S  W  N  K  L  V  L  I  S  C  L  F  V  I  S  R  I  S  V  *  T  *  L  S  L  I  T  R  W  S  A  D  K  E  W  E  V  V  G  Q  N  N  D  F  Q  W  M  Q  I  A  E  P  V  M  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6100" stop="7869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1767</number_coding_nucleotides>
                  <number_encoded_amino_acids>589</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIKDGLPDDMEVLYVGSLKVEVDSSEQDDVSQLLLDRFKCVPAFLPPDILSKYYHGFCKQHLWPLFHYMLPYSASHGSRFDRSWWEAYVAANKIFSQKVIEVINPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMRQIENVLQLADKESRVAELKQQFEGKTVLLGVDDMDIFKGVDLKLLALEEMLKQHPKWQGRAVLVQIANPARAKGKDIEEIQEEIQTSVKRINDKFRQPGYEPIVFIDRPVSLSERTAYYSVAECVVVTAVRDGMNLTPYEYVVCRQGIPGSECTAESNGLKSSMLVVSEFIGCSPSLSGAIRVNPWNVEATAEALNEAISMADGEKVLRHEKHYKYVSTHDVAYWSRSFFQDLERSCRDHFRRRCWGIGLSFGFRVVALDPNFKKLSIDTIVSAYSRAKNRAILLDYDGTLMPQTAINKVPSPEVISIINSLCGDERNTVFLVSGRGRDSLGQWFSPCEKLGIAAEHGYFLRYSWNKLVLISCLFVISRISV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10335" PGL_stop="9875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10335" e_stop="9875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10335" e_stop="9875" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="9875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTTTATATTACAAATATTAGGAATCAAATGTTTGTTCTGCAAACTACCACTTGAAAGACCAAGAATAATTGATGTCACTATTAACAATCACCTGGTTTTTTTTTGTCATGTTCTAGCTTACGAAATTTAGTTTAGGAACTCTATCACAAGGAAGAAAAGAGAAGGTAAAATTCTATAGCATTTACAATTATGAGAATCCAACAAATTGGTGTATCCCAACAACAATAATAACCTCACTCCTAGATGCAAAAGAAGGAATCCTTAAATAAATGAAGCAAAAGAGAAGAAAAAACACCTGTTCACAGTTGATCTAACAATGCAGGTTACGAGTCTTTGACAATTGTTGCTCCATCTTGTCATATGCAAGACAAGAAACTGACGTGTGGCCTTCGTAAAAGTAACTTGAATAAGAGTATGTATTCAACAAGGGCAGCACAGATGTATAGATCCTGTTCATGG</gDNA_template>
            <first_frame> T  F  I  L  Q  I  L  G  I  K  C  L  F  C  K  L  P  L  E  R  P  R  I  I  D  V  T  I  N  N  H  L  V  F  F  C  H  V  L  A  Y  E  I  *  F  R  N  S  I  T  R  K  K  R  E  G  K  I  L  *  H  L  Q  L  *  E  S  N  K  L  V  Y  P  N  N  N  N  N  L  T  P  R  C  K  R  R  N  P  *  I  N  E  A  K  E  K  K  K  H  L  F  T  V  D  L  T  M  Q  V  T  S  L  *  Q  L  L  L  H  L  V  I  C  K  T  R  N  *  R  V  A  F  V  K  V  T  *  I  R  V  C  I  Q  Q  G  Q  H  R  C  I  D  P  V  H   </first_frame>
            <second_frame>  P  L  Y  Y  K  Y  *  E  S  N  V  C  S  A  N  Y  H  L  K  D  Q  E  *  L  M  S  L  L  T  I  T  W  F  F  F  V  M  F  *  L  T  K  F  S  L  G  T  L  S  Q  G  R  K  E  K  V  K  F  Y  S  I  Y  N  Y  E  N  P  T  N  W  C  I  P  T  T  I  I  T  S  L  L  D  A  K  E  G  I  L  K  *  M  K  Q  K  R  R  K  N  T  C  S  Q  L  I  *  Q  C  R  L  R  V  F  D  N  C  C  S  I  L  S  Y  A  R  Q  E  T  D  V  W  P  S  *  K  *  L  E  *  E  Y  V  F  N  K  G  S  T  D  V  *  I  L  F  M  </second_frame>
            <third_frame>   L  Y  I  T  N  I  R  N  Q  M  F  V  L  Q  T  T  T  *  K  T  K  N  N  *  C  H  Y  *  Q  S  P  G  F  F  L  S  C  S  S  L  R  N  L  V  *  E  L  Y  H  K  E  E  K  R  R  *  N  S  I  A  F  T  I  M  R  I  Q  Q  I  G  V  S  Q  Q  Q  *  *  P  H  S  *  M  Q  K  K  E  S  L  N  K  *  S  K  R  E  E  K  T  P  V  H  S  *  S  N  N  A  G  Y  E  S  L  T  I  V  A  P  S  C  H  M  Q  D  K  K  L  T  C  G  L  R  K  S  N  L  N  K  S  M  Y  S  T  R  A  A  Q  M  Y  R  S  C  S  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0011K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13551" PGL_stop="12522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13551" e_stop="12522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13551" e_stop="12522" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="12854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13243" stop="12522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13238" stop="12522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13077" stop="12550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13077" stop="12550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCTGTTTGGGAAATTCTTGAAAGCCAAATACCTTCATTTAGTTCATCCCAAAATGGAGTTTTCCTTTTCCGGGAACTTAAACCAGAGGAAACTTGTGAACTCCGGCGAGTTCCCGGAAACAGAGTTCTTCAAAGTTTTCAGCGAGATGGGTCGGCGCGTGTGGCTTTTACATTGCTTAGCATTCTCTTTCGATCAACAAGTTAGCATTTTTCAAGTTCGGAAAAACTCCAGATTCTCAGAGGTCTACATGGAAAGCATCACAGACGAGATTTTCTCCTTCGCCGGCGGCGAATTCAAGGTGGCGTTCACGGTGGTTCCCGGTTTTAAAATCGGTCAAACAGTAGTCCAAAGTCAGGTATATTTATCTCCGGTCACTCCTCCGTCCAAGCACTAATGGGAAATCAAGTAAAAAATCACATCCCCACTCGCTTAAAATCACCACGCGCCGCCTCAATCACAGTGGTAGATCTCCTCTCTCCGGCCGCAGCATGTACATGGTTATCAAACTTCCTTCAATAAAATGGGCTCATCTAAAAACAGAACAGATCACGGTGGCGCGTGAGGTGTACGCGGTACGGATTATATGTGTTGAGAATGTGATGGGCCTTGGTCCAAAAGTATTAAGTGGGCTTTTGGGCCCACATAGTGAAAGTGGTTCAGGGCTGTGAAGTGGATGATTTGGAGTATAGTGAAGAAAAGATTGGGCGGTGAAGACAAAAGGCAAAGTAGGCTCAGTCAGGTAGTGGGCCCAATAAGGCATACGTCTTTGTTTTCTTTGGTATATCACAAAAGTAGAAAGAGGGACCCTTTATCTCTGAATTAAAAAAAAAGAAGAAGAAACTAAAAATGTTGTTTATTCCTCAAATTGTACGTTAAAGAATGACAGACAATATGCCTGCAACTTGCATATCAGATTATATAATGTGTATAAACAATTAGCTAAACTATTACTTAGTATATACATAGTATATATAATGAATATTAGCATTGTGCATGGTATCTTTGCTTTGAATTTTGGATCTAG</gDNA_template>
            <first_frame> F  F  S  V  W  E  I  L  E  S  Q  I  P  S  F  S  S  S  Q  N  G  V  F  L  F  R  E  L  K  P  E  E  T  C  E  L  R  R  V  P  G  N  R  V  L  Q  S  F  Q  R  D  G  S  A  R  V  A  F  T  L  L  S  I  L  F  R  S  T  S  *  H  F  S  S  S  E  K  L  Q  I  L  R  G  L  H  G  K  H  H  R  R  D  F  L  L  R  R  R  R  I  Q  G  G  V  H  G  G  S  R  F  *  N  R  S  N  S  S  P  K  S  G  I  F  I  S  G  H  S  S  V  Q  A  L  M  G  N  Q  V  K  N  H  I  P  T  R  L  K  S  P  R  A  A  S  I  T  V  V  D  L  L  S  P  A  A  A  C  T  W  L  S  N  F  L  Q  *  N  G  L  I  *  K  Q  N  R  S  R  W  R  V  R  C  T  R  Y  G  L  Y  V  L  R  M  *  W  A  L  V  Q  K  Y  *  V  G  F  W  A  H  I  V  K  V  V  Q  G  C  E  V  D  D  L  E  Y  S  E  E  K  I  G  R  *  R  Q  K  A  K  *  A  Q  S  G  S  G  P  N  K  A  Y  V  F  V  F  F  G  I  S  Q  K  *  K  E  G  P  F  I  S  E  L  K  K  K  K  K  K  L  K  M  L  F  I  P  Q  I  V  R  *  R  M  T  D  N  M  P  A  T  C  I  S  D  Y  I  M  C  I  N  N  *  L  N  Y  Y  L  V  Y  T  *  Y  I  *  *  I  L  A  L  C  M  V  S  L  L  *  I  L  D  L  </first_frame>
            <second_frame>  S  S  L  F  G  K  F  L  K  A  K  Y  L  H  L  V  H  P  K  M  E  F  S  F  S  G  N  L  N  Q  R  K  L  V  N  S  G  E  F  P  E  T  E  F  F  K  V  F  S  E  M  G  R  R  V  W  L  L  H  C  L  A  F  S  F  D  Q  Q  V  S  I  F  Q  V  R  K  N  S  R  F  S  E  V  Y  M  E  S  I  T  D  E  I  F  S  F  A  G  G  E  F  K  V  A  F  T  V  V  P  G  F  K  I  G  Q  T  V  V  Q  S  Q  V  Y  L  S  P  V  T  P  P  S  K  H  *  W  E  I  K  *  K  I  T  S  P  L  A  *  N  H  H  A  P  P  Q  S  Q  W  *  I  S  S  L  R  P  Q  H  V  H  G  Y  Q  T  S  F  N  K  M  G  S  S  K  N  R  T  D  H  G  G  A  *  G  V  R  G  T  D  Y  M  C  *  E  C  D  G  P  W  S  K  S  I  K  W  A  F  G  P  T  *  *  K  W  F  R  A  V  K  W  M  I  W  S  I  V  K  K  R  L  G  G  E  D  K  R  Q  S  R  L  S  Q  V  V  G  P  I  R  H  T  S  L  F  S  L  V  Y  H  K  S  R  K  R  D  P  L  S  L  N  *  K  K  R  R  R  N  *  K  C  C  L  F  L  K  L  Y  V  K  E  *  Q  T  I  C  L  Q  L  A  Y  Q  I  I  *  C  V  *  T  I  S  *  T  I  T  *  Y  I  H  S  I  Y  N  E  Y  *  H  C  A  W  Y  L  C  F  E  F  W  I  * </second_frame>
            <third_frame>   L  L  C  L  G  N  S  *  K  P  N  T  F  I  *  F  I  P  K  W  S  F  P  F  P  G  T  *  T  R  G  N  L  *  T  P  A  S  S  R  K  Q  S  S  S  K  F  S  A  R  W  V  G  A  C  G  F  Y  I  A  *  H  S  L  S  I  N  K  L  A  F  F  K  F  G  K  T  P  D  S  Q  R  S  T  W  K  A  S  Q  T  R  F  S  P  S  P  A  A  N  S  R  W  R  S  R  W  F  P  V  L  K  S  V  K  Q  *  S  K  V  R  Y  I  Y  L  R  S  L  L  R  P  S  T  N  G  K  S  S  K  K  S  H  P  H  S  L  K  I  T  T  R  R  L  N  H  S  G  R  S  P  L  S  G  R  S  M  Y  M  V  I  K  L  P  S  I  K  W  A  H  L  K  T  E  Q  I  T  V  A  R  E  V  Y  A  V  R  I  I  C  V  E  N  V  M  G  L  G  P  K  V  L  S  G  L  L  G  P  H  S  E  S  G  S  G  L  *  S  G  *  F  G  V  *  *  R  K  D  W  A  V  K  T  K  G  K  V  G  S  V  R  *  W  A  Q  *  G  I  R  L  C  F  L  W  Y  I  T  K  V  E  R  G  T  L  Y  L  *  I  K  K  K  E  E  E  T  K  N  V  V  Y  S  S  N  C  T  L  K  N  D  R  Q  Y  A  C  N  L  H  I  R  L  Y  N  V  Y  K  Q  L  A  K  L  L  L  S  I  Y  I  V  Y  I  M  N  I  S  I  V  H  G  I  F  A  L  N  F  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13550" stop="13152"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLFGKFLKAKYLHLVHPKMEFSFSGNLNQRKLVNSGEFPETEFFKVFSEMGRRVWLLHCLAFSFDQQVSIFQVRKNSRFSEVYMESITDEIFSFAGGEFKVAFTVVPGFKIGQTVVQSQVYLSPVTPPSKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13201" stop="12878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKVRYIYLRSLLRPSTNGKSSKKSHPHSLKITTRRLNHSGRSPLSGRSMYMVIKLPSIKWAHLKTEQITVAREVYAVRIICVENVMGLGPKVLSGLLGPHSESGSGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12727" stop="12524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKKEEETKNVVYSSNCTLKNDRQYACNLHIRLYNVYKQLAKLLLSIYIVYIMNISIVHGIFALNFGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="14769" PGL_stop="13672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14769" e_stop="13672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="14769" e_stop="13672" e_length="1098"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14769" stop="14054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14679" stop="13966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14679" stop="13999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14679" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14227" stop="13672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCTTTTACTACCCAACTTCCATTTTTTTCCTTTTATCTTCAACCTTGAATCAAACAAGAGGGACTCTGCTTTTCCCTCCTTTTCTTCTCTGTCCATTTTTTTCTCTCTTTTTTTCCACTTTCTCAGCACACCCTTTTGCTTTCTACCTTCAGTTCACACTTGTCAAGACTCCATATTTTTCATGTCCTAAAAATCACTGATTTTGCTTGCCTACTCTGTTTTACTCTGTTTCAGCAATATCAAAATGGAATCTGTGAGACCAGCTCCGGCTCCTAGTAAAAGCAGGTTAGCTAAGACATTTCAGAGAGTAATCCATCGGAAAAACTCTTCAAAACCATTTTCCAATAATGGGTTTTGCCTACTCATACCTCAAGAAAAGCTTAGGTGCTGTGAGTCGCAGCACTTTGATAAAGAAGAAATTGAAGAGTGTAAAGAACATACCAAAAACAGAGCGGTTATGGAGGCTTTTGTTGCTAAGCTTTTTGCTACAATTTCTTCTGTTAAAGCTGCGTATGCTGAGCTTCAGCTGGCTCAGTTCCCTTATGATAGTGAAGCTATTCAAGTTGCAGATCAAGCTGTGGTGGATGAACTCAAAGCTTTGTCTGAGCTTAAACATAGTTATATCAAAAAACAAATTGATTCTTCACCACCCCATGTAACTTTAATGCTTGCTGAGATTCAAGAACAGCAATCTGTCATGAAAACTTATGAAATCACCATGAAGAAAATGCAGGGAGAAATTGAATCTAAAGGGTACAACATATCTTCTCTACAAAAGGAGCTACAAGAAACCATTCACAACAATAGATCACTCGAAAGAAAGCTCAACGCCAGTGGATCATTCTCCATTCTTGACAATGTCAAATTTTCAGATGTAAATCCTAAAGATTTCATCATGGTTTTACACTACGCCATGAGATCTATCCGAAATTTTGTCAAGTTCTTGATTCGGGAAATGGAGTCTGCAAATTGGGATATTGATGCTGCTACGAAATCTATTCAAAATGGTGTCACTTTCCACAAGAGTAATCATAGGGCTTTTGCGTTTGAGTCTTTTGTTTGCAGAGAGATTTTCAGTGGGTTTAATGAGCCAAC</gDNA_template>
            <first_frame> L  A  F  T  T  Q  L  P  F  F  S  F  Y  L  Q  P  *  I  K  Q  E  G  L  C  F  S  L  L  F  F  S  V  H  F  F  L  S  F  F  P  L  S  Q  H  T  L  L  L  S  T  F  S  S  H  L  S  R  L  H  I  F  H  V  L  K  I  T  D  F  A  C  L  L  C  F  T  L  F  Q  Q  Y  Q  N  G  I  C  E  T  S  S  G  S  *  *  K  Q  V  S  *  D  I  S  E  S  N  P  S  E  K  L  F  K  T  I  F  Q  *  W  V  L  P  T  H  T  S  R  K  A  *  V  L  *  V  A  A  L  *  *  R  R  N  *  R  V  *  R  T  Y  Q  K  Q  S  G  Y  G  G  F  C  C  *  A  F  C  Y  N  F  F  C  *  S  C  V  C  *  A  S  A  G  S  V  P  L  *  *  *  S  Y  S  S  C  R  S  S  C  G  G  *  T  Q  S  F  V  *  A  *  T  *  L  Y  Q  K  T  N  *  F  F  T  T  P  C  N  F  N  A  C  *  D  S  R  T  A  I  C  H  E  N  L  *  N  H  H  E  E  N  A  G  R  N  *  I  *  R  V  Q  H  I  F  S  T  K  G  A  T  R  N  H  S  Q  Q  *  I  T  R  K  K  A  Q  R  Q  W  I  I  L  H  S  *  Q  C  Q  I  F  R  C  K  S  *  R  F  H  H  G  F  T  L  R  H  E  I  Y  P  K  F  C  Q  V  L  D  S  G  N  G  V  C  K  L  G  Y  *  C  C  Y  E  I  Y  S  K  W  C  H  F  P  Q  E  *  S  *  G  F  C  V  *  V  F  C  L  Q  R  D  F  Q  W  V  *  *  A  N </first_frame>
            <second_frame>  W  L  L  L  P  N  F  H  F  F  P  F  I  F  N  L  E  S  N  K  R  D  S  A  F  P  S  F  S  S  L  S  I  F  F  S  L  F  F  H  F  L  S  T  P  F  C  F  L  P  S  V  H  T  C  Q  D  S  I  F  F  M  S  *  K  S  L  I  L  L  A  Y  S  V  L  L  C  F  S  N  I  K  M  E  S  V  R  P  A  P  A  P  S  K  S  R  L  A  K  T  F  Q  R  V  I  H  R  K  N  S  S  K  P  F  S  N  N  G  F  C  L  L  I  P  Q  E  K  L  R  C  C  E  S  Q  H  F  D  K  E  E  I  E  E  C  K  E  H  T  K  N  R  A  V  M  E  A  F  V  A  K  L  F  A  T  I  S  S  V  K  A  A  Y  A  E  L  Q  L  A  Q  F  P  Y  D  S  E  A  I  Q  V  A  D  Q  A  V  V  D  E  L  K  A  L  S  E  L  K  H  S  Y  I  K  K  Q  I  D  S  S  P  P  H  V  T  L  M  L  A  E  I  Q  E  Q  Q  S  V  M  K  T  Y  E  I  T  M  K  K  M  Q  G  E  I  E  S  K  G  Y  N  I  S  S  L  Q  K  E  L  Q  E  T  I  H  N  N  R  S  L  E  R  K  L  N  A  S  G  S  F  S  I  L  D  N  V  K  F  S  D  V  N  P  K  D  F  I  M  V  L  H  Y  A  M  R  S  I  R  N  F  V  K  F  L  I  R  E  M  E  S  A  N  W  D  I  D  A  A  T  K  S  I  Q  N  G  V  T  F  H  K  S  N  H  R  A  F  A  F  E  S  F  V  C  R  E  I  F  S  G  F  N  E  P   </second_frame>
            <third_frame>   G  F  Y  Y  P  T  S  I  F  F  L  L  S  S  T  L  N  Q  T  R  G  T  L  L  F  P  P  F  L  L  C  P  F  F  S  L  F  F  S  T  F  S  A  H  P  F  A  F  Y  L  Q  F  T  L  V  K  T  P  Y  F  S  C  P  K  N  H  *  F  C  L  P  T  L  F  Y  S  V  S  A  I  S  K  W  N  L  *  D  Q  L  R  L  L  V  K  A  G  *  L  R  H  F  R  E  *  S  I  G  K  T  L  Q  N  H  F  P  I  M  G  F  A  Y  S  Y  L  K  K  S  L  G  A  V  S  R  S  T  L  I  K  K  K  L  K  S  V  K  N  I  P  K  T  E  R  L  W  R  L  L  L  L  S  F  L  L  Q  F  L  L  L  K  L  R  M  L  S  F  S  W  L  S  S  L  M  I  V  K  L  F  K  L  Q  I  K  L  W  W  M  N  S  K  L  C  L  S  L  N  I  V  I  S  K  N  K  L  I  L  H  H  P  M  *  L  *  C  L  L  R  F  K  N  S  N  L  S  *  K  L  M  K  S  P  *  R  K  C  R  E  K  L  N  L  K  G  T  T  Y  L  L  Y  K  R  S  Y  K  K  P  F  T  T  I  D  H  S  K  E  S  S  T  P  V  D  H  S  P  F  L  T  M  S  N  F  Q  M  *  I  L  K  I  S  S  W  F  Y  T  T  P  *  D  L  S  E  I  L  S  S  S  *  F  G  K  W  S  L  Q  I  G  I  L  M  L  L  R  N  L  F  K  M  V  S  L  S  T  R  V  I  I  G  L  L  R  L  S  L  L  F  A  E  R  F  S  V  G  L  M  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14576" stop="13674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSLILLAYSVLLCFSNIKMESVRPAPAPSKSRLAKTFQRVIHRKNSSKPFSNNGFCLLIPQEKLRCCESQHFDKEEIEECKEHTKNRAVMEAFVAKLFATISSVKAAYAELQLAQFPYDSEAIQVADQAVVDELKALSELKHSYIKKQIDSSPPHVTLMLAEIQEQQSVMKTYEITMKKMQGEIESKGYNISSLQKELQETIHNNRSLERKLNASGSFSILDNVKFSDVNPKDFIMVLHYAMRSIRNFVKFLIREMESANWDIDAATKSIQNGVTFHKSNHRAFAFESFVCREIFSGFNEP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14767" stop="14567"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFYYPTSIFFLLSSTLNQTRGTLLFPPFLLCPFFSLFFSTFSAHPFAFYLQFTLVKTPYFSCPKNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33647" PGL_stop="28916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33647" e_stop="33472"/>
            <exon e_start="32225" e_stop="31858"/>
            <exon e_start="31347" e_stop="31120"/>
            <exon e_start="31030" e_stop="30676"/>
            <exon e_start="30565" e_stop="30441"/>
            <exon e_start="30306" e_stop="30171"/>
            <exon e_start="29396" e_stop="28916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.565" e_score="1.000"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29254" stop="28948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29187" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCACGCGTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT : AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT : TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG : TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG : TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG : CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG : GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAACAAGCTT</gDNA_template>
            <first_frame> R  H  A  F  S  I  S  V  N  W  *  R  L  H  I  N  P  S  D  P  P  L  L  S  L  S  S  L  S  W  S  K  P  Y  K  *  K  H  S  S  T  E  K  S  S  E  *  Q  S  T  D  I  S  R  S  S  L  P  L :   D  S  S  V  N  S  E  Q  W  E  E  D  S  E  C  C  T  L  *  N  H  F  F  L  F  Y  L  K  F  R  V  L  T  G  R  F  N  S  K  R  R  S  S  I  L  *  L  R  L  L  F  F  W  F  A  V  S  S  L  F  M  A  Y  T  L  Q  L  A  R  I  L  F  T  G  C  V  S  F  L  P  Q  T  V  V  Q  S  W  N  L  E  L  L  Q  L  *  L  L  E  W  *  C  N  C  *  L  D  Q  K  S  F  K  W  T  T  M  F  G  R  T  E  H  S   : L  M  V  L  K  S  Y  W  V  S  *  L  L  S  V  R  Q  L  L  M  S  C  R  G  C  M  A  V  L  A  N  W  V  L  E  M  L  S  S  L  S  S  N  S  A  L  L  L  S  L  S  C  A  *  M  N  F  F  R  K  D  M  V  L  A  L  E  F  P  C  S  *  L  P  I  S   : V  K  A  L  S  G  K  H  L  V  P  Q  P  S  I  P  G  V  V  L  N  L  K  E  L  *  L  L  C  S  I  L  L  L  L  D  L  I  G  L  V  P  C  V  R  L  S  T  G  K  V  S  P  M  *  Q  I  C  L  Q  L  C  *  S  S  S  S  L  S  T  S  K  D  S  V  *  F  Y  L  L  D  L  R  M  L  V  D  S  K  V  L  T  Q  L  N  S  S  T  P  Q  T  C  L  L  F  C  S  P  H  L  S  Q  T  C  I  S  S  L  S :   C  S  T  G  D  M  E  E  I  S  S  W  I  *  *  E  L  G  K  N  L  N  I  L  D  N  L  F  L  L  L  V  L  L  T  L  S  L  R  H  Q   : A  W  Q  K  W  C  R  I  R  S  M  L  F  S  I  *  C  S  C  Y  Q  P  V  P  C  S  Q  R  P  G  L  K  F  L  D  R  L  P  E  M  L  P  N  S  S  R :   S  N  K  W  *  C  L  V  I  V  I  P  T  C  R  R  N  *  I  V  T  Y  L  L  Q  L  P  L  E  E  F  A  L  V  H  *  Q  F  W  Q  T  *  W  E  R  L  D  Q  E  L  E  S  F  L  Q  S  Q  S  F  T  S  I  L  R  H  S  R  R  R  R  P  L  N  *  A  C  L  V  C  R  L  *  R  L  C  *  N  V  P  P  S  Q  E  S  N  V  V  N  L  L  A  Y  N  G  *  I  L  E  A  T  S  F  S  C  *  I  L  *  V  F  F  F  V  F  N  C  A  D  E  R  P  N  V  L  H  E  K  T  R  L  I  Y  R  N  S  Q  R  I  F  Y  M  I  Q  A  S  S  T  N  K  L </first_frame>
            <second_frame>  V  T  R  S  P  S  L  L  T  G  D  A  Y  T  *  I  R  Q  I  R  P  F  S  P  S  P  L  S  H  G  Q  N  P  T  N  R  S  I  A  R  R  R  N  R  A  N  N  S  P  R  T  S  P  D  R  R  Y  L   : *  I  V  L  L  I  V  N  N  G  R  R  I  Q  S  A  A  P  C  E  T  I  S  F  F  S  T  *  S  S  E  C  *  Q  E  G  S  I  Q  R  E  G  H  L  Y  C  N  C  A  C  Y  F  S  G  L  Q  S  A  P  S  L  W  H  T  L  Y  N  W  R  G  S  F  L  L  D  A  C  H  S  C  L  K  P  W  Y  S  H  G  T  W  N  Y  S  N  C  D  F  W  N  G  D  A  I  V  S  W  I  K  N  H  S  S  G  Q  Q  C  S  G  G  P  S  T  P  :  *  W  C  S  K  A  I  G  Y  P  D  C  C  R  *  G  S  C  L  C  P  V  G  D  V  W  Q  C  *  P  I  G  C  W  K  C  Y  P  H  Y  P  P  T  L  L  C  C  Y  H  C  H  V  L  R  *  T  S  S  E  R  I  W  S  W  L  W  N  F  L  V  H  S  Y  Q  Y  L  :  *  K  H  Y  L  E  S  I  *  S  H  N  H  Q  Y  R  A  W  C  *  I  *  R  S  Y  N  C  S  V  P  S  Y  Y  Y  *  I  *  *  D  *  C  L  A  *  G  F  L  P  A  K  S  P  Q  C  D  K  S  A  C  N  C  V  D  L  P  H  R  Y  L  L  P  R  I  P  C  S  F  T  C  *  I  *  E  C  S  W  T  A  R  F  L  P  N  *  T  L  L  H  L  K  H  A  Y  Y  F  A  V  R  T  C  L  K  P  V  F  H  L  S   : V  A  L  Q  E  I  W  R  K  F  H  R  G  Y  D  R  N  L  E  R  I  *  I  F  W  T  I  C  S  C  C  W  S  C  L  P  C  H  C  A  I  K  :  L  G  R  N  G  V  A  S  V  P  C  S  F  L  Y  S  V  H  V  I  S  L  C  P  V  L  K  D  L  D  *  S  F  W  I  V  C  Q  R  C  C  Q  T  A  Q   : G  A  T  N  G  D  A  W  S  S  *  F  Q  P  A  E  G  T  K  S  L  H  T  Y  C  S  C  L  W  R  S  L  H  W  C  I  D  S  F  G  R  L  D  G  S  D  W  I  R  N  W  N  P  S  C  S  H  N  H  L  P  V  F  *  D  I  R  E  G  E  G  H  *  T  R  H  V  W  F  V  G  C  S  V  Y  A  R  M  S  L  Q  A  K  R  A  M  *  *  T  C  W  L  I  M  D  R  Y  *  R  P  Q  V  F  P  V  K  F  C  K  F  F  F  L  F  L  T  V  L  M  S  A  R  M  F  Y  M  K  R  L  G  *  F  T  E  I  L  K  G  Y  F  T  *  Y  K  H  R  A  Q  T  S   </second_frame>
            <third_frame>   S  R  V  L  H  L  C  *  L  V  T  L  T  H  K  S  V  R  S  A  P  S  L  P  L  L  S  L  M  V  K  T  L  Q  I  E  A  *  L  D  G  E  I  E  R  I  T  V  H  G  H  L  Q  I  V  A  T  S  :  R  *  F  C  *  *  *  T  M  G  G  G  F  R  V  L  H  L  V  K  P  F  L  S  F  L  P  E  V  Q  S  A  D  R  K  V  Q  F  K  E  K  V  I  Y  T  V  I  A  L  A  I  F  L  V  C  S  Q  L  P  L  Y  G  I  H  S  T  T  G  A  D  P  F  Y  W  M  R  V  I  L  A  S  N  R  G  T  V  M  E  L  G  I  T  P  I  V  T  S  G  M  V  M  Q  L  L  A  G  S  K  I  I  Q  V  D  N  N  V  R  E  D  R  A  L  L :   N  G  A  Q  K  L  L  G  I  L  I  A  V  G  E  A  V  A  Y  V  L  S  G  M  Y  G  S  V  S  Q  L  G  V  G  N  A  I  L  I  I  L  Q  L  C  F  A  A  I  I  V  M  C  L  D  E  L  L  Q  K  G  Y  G  L  G  S  G  I  S  L  F  I  A  T  N  I  C :   E  S  I  I  W  K  A  F  S  P  T  T  I  N  T  G  R  G  A  E  F  E  G  A  I  I  A  L  F  H  L  T  I  T  R  S  N  R  I  S  A  L  R  E  A  F  Y  R  Q  S  L  P  N  V  T  N  L  L  A  T  V  L  I  F  L  I  V  I  Y  F  Q  G  F  R  V  V  L  P  V  R  S  K  N  A  R  G  Q  Q  G  S  Y  P  I  K  L  F  Y  T  S  N  M  P  I  I  L  Q  S  A  L  V  S  N  L  Y  F  I  S  Q  :  L  L  Y  R  R  Y  G  G  N  F  I  V  D  M  I  G  T  W  K  E  S  E  Y  S  G  Q  S  V  P  V  A  G  L  A  Y  L  V  T  A  P  S  S :   L  A  E  M  V  S  H  P  F  H  A  L  F  Y  I  V  F  M  L  S  A  C  A  L  F  S  K  T  W  I  E  V  S  G  S  S  A  R  D  V  A  K  Q  L  K  :  E  Q  Q  M  V  M  P  G  H  R  D  S  N  L  Q  K  E  L  N  R  Y  I  P  T  A  A  A  F  G  G  V  C  I  G  A  L  T  V  L  A  D  L  M  G  A  I  G  S  G  T  G  I  L  L  A  V  T  I  I  Y  Q  Y  F  E  T  F  E  K  E  K  A  T  E  L  G  M  F  G  L  *  A  V  A  F  M  L  E  C  P  S  K  P  R  E  Q  C  S  E  L  V  G  L  *  W  I  D  I  R  G  H  K  F  F  L  L  N  F  V  S  F  F  F  C  F  *  L  C  *  *  A  P  E  C  F  T  *  K  D  *  V  N  L  Q  K  F  S  K  D  I  L  H  D  T  S  I  E  H  K  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32204" stop="31858"/>
                    <exon start="31347" stop="31120"/>
                    <exon start="31030" stop="30676"/>
                    <exon start="30565" stop="30441"/>
                    <exon start="30306" stop="30171"/>
                    <exon start="29396" stop="29157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGGGFRVLHLVKPFLSFLPEVQSADRKVQFKEKVIYTVIALAIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLAGSKIIQVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIILQLCFAAIIVMCLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINTGRGAEFEGAIIALFHLTITRSNRISALREAFYRQSLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRRYGGNFIVDMIGTWKESEYSGQSVPVAGLAYLVTAPSSLAEMVSHPFHALFYIVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADLMGAIGSGTGILLAVTIIYQYFETFEKEKATELGMFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33645" e_stop="33472"/>
            <exon e_start="32225" e_stop="31858"/>
            <exon e_start="31347" e_stop="31149"/>
            <exon e_start="31013" e_stop="30676"/>
            <exon e_start="30565" e_stop="30441"/>
            <exon e_start="30306" e_stop="30171"/>
            <exon e_start="29396" e_stop="28916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33645" e_stop="33472" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32225" e_stop="31858" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31347" e_stop="31149" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31148" i_stop="31014" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31013" e_stop="30676" e_length="338"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.895">
            <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30565" e_stop="30441" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.565">
            <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30306" e_stop="30171" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.897">
            <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="29396" e_stop="28916" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33645" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33638" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33635" stop="33472"/>
              <exon start="32225" stop="32192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33618" stop="33472"/>
              <exon start="32225" stop="31858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33582" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33556" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33499" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32163" stop="31858"/>
              <exon start="31347" stop="31268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32086" stop="31858"/>
              <exon start="31347" stop="31149"/>
              <exon start="31013" stop="30820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32049" stop="31858"/>
              <exon start="31347" stop="31319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30988" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30976" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30922" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30904" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30900" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30847" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30832" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30832" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30816" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30795" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30793" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30713" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30705" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30699" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30513" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30511" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30499" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30447" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29379" stop="28916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29373" stop="28922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29318" stop="28956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29316" stop="28957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29303" stop="28953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593524" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29269" stop="28922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29260" stop="29102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29254" stop="28948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29187" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGCGTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT : AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT : TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGA : AAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG : TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG : CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG : GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAACAAGCTT</gDNA_template>
            <first_frame> S  R  V  L  H  L  C  *  L  V  T  L  T  H  K  S  V  R  S  A  P  S  L  P  L  L  S  L  M  V  K  T  L  Q  I  E  A  *  L  D  G  E  I  E  R  I  T  V  H  G  H  L  Q  I  V  A  T  S  :  R  *  F  C  *  *  *  T  M  G  G  G  F  R  V  L  H  L  V  K  P  F  L  S  F  L  P  E  V  Q  S  A  D  R  K  V  Q  F  K  E  K  V  I  Y  T  V  I  A  L  A  I  F  L  V  C  S  Q  L  P  L  Y  G  I  H  S  T  T  G  A  D  P  F  Y  W  M  R  V  I  L  A  S  N  R  G  T  V  M  E  L  G  I  T  P  I  V  T  S  G  M  V  M  Q  L  L  A  G  S  K  I  I  Q  V  D  N  N  V  R  E  D  R  A  L  L :   N  G  A  Q  K  L  L  G  I  L  I  A  V  G  E  A  V  A  Y  V  L  S  G  M  Y  G  S  V  S  Q  L  G  V  G  N  A  I  L  I  I  L  Q  L  C  F  A  A  I  I  V  M  C  L  D  E  L  L  Q  K  G  Y  G  L  G  S  G  :  K  H  L  V  P  Q  P  S  I  P  G  V  V  L  N  L  K  E  L  *  L  L  C  S  I  L  L  L  L  D  L  I  G  L  V  P  C  V  R  L  S  T  G  K  V  S  P  M  *  Q  I  C  L  Q  L  C  *  S  S  S  S  L  S  T  S  K  D  S  V  *  F  Y  L  L  D  L  R  M  L  V  D  S  K  V  L  T  Q  L  N  S  S  T  P  Q  T  C  L  L  F  C  S  P  H  L  S  Q  T  C  I  S  S  L  S :   C  S  T  G  D  M  E  E  I  S  S  W  I  *  *  E  L  G  K  N  L  N  I  L  D  N  L  F  L  L  L  V  L  L  T  L  S  L  R  H  Q   : A  W  Q  K  W  C  R  I  R  S  M  L  F  S  I  *  C  S  C  Y  Q  P  V  P  C  S  Q  R  P  G  L  K  F  L  D  R  L  P  E  M  L  P  N  S  S  R :   S  N  K  W  *  C  L  V  I  V  I  P  T  C  R  R  N  *  I  V  T  Y  L  L  Q  L  P  L  E  E  F  A  L  V  H  *  Q  F  W  Q  T  *  W  E  R  L  D  Q  E  L  E  S  F  L  Q  S  Q  S  F  T  S  I  L  R  H  S  R  R  R  R  P  L  N  *  A  C  L  V  C  R  L  *  R  L  C  *  N  V  P  P  S  Q  E  S  N  V  V  N  L  L  A  Y  N  G  *  I  L  E  A  T  S  F  S  C  *  I  L  *  V  F  F  F  V  F  N  C  A  D  E  R  P  N  V  L  H  E  K  T  R  L  I  Y  R  N  S  Q  R  I  F  Y  M  I  Q  A  S  S  T  N  K  L </first_frame>
            <second_frame>  H  A  F  S  I  S  V  N  W  *  R  L  H  I  N  P  S  D  P  P  L  L  S  L  S  S  L  S  W  S  K  P  Y  K  *  K  H  S  S  T  E  K  S  S  E  *  Q  S  T  D  I  S  R  S  S  L  P  L :   D  S  S  V  N  S  E  Q  W  E  E  D  S  E  C  C  T  L  *  N  H  F  F  L  F  Y  L  K  F  R  V  L  T  G  R  F  N  S  K  R  R  S  S  I  L  *  L  R  L  L  F  F  W  F  A  V  S  S  L  F  M  A  Y  T  L  Q  L  A  R  I  L  F  T  G  C  V  S  F  L  P  Q  T  V  V  Q  S  W  N  L  E  L  L  Q  L  *  L  L  E  W  *  C  N  C  *  L  D  Q  K  S  F  K  W  T  T  M  F  G  R  T  E  H  S   : L  M  V  L  K  S  Y  W  V  S  *  L  L  S  V  R  Q  L  L  M  S  C  R  G  C  M  A  V  L  A  N  W  V  L  E  M  L  S  S  L  S  S  N  S  A  L  L  L  S  L  S  C  A  *  M  N  F  F  R  K  D  M  V  L  A  L  E :   S  I  *  S  H  N  H  Q  Y  R  A  W  C  *  I  *  R  S  Y  N  C  S  V  P  S  Y  Y  Y  *  I  *  *  D  *  C  L  A  *  G  F  L  P  A  K  S  P  Q  C  D  K  S  A  C  N  C  V  D  L  P  H  R  Y  L  L  P  R  I  P  C  S  F  T  C  *  I  *  E  C  S  W  T  A  R  F  L  P  N  *  T  L  L  H  L  K  H  A  Y  Y  F  A  V  R  T  C  L  K  P  V  F  H  L  S   : V  A  L  Q  E  I  W  R  K  F  H  R  G  Y  D  R  N  L  E  R  I  *  I  F  W  T  I  C  S  C  C  W  S  C  L  P  C  H  C  A  I  K  :  L  G  R  N  G  V  A  S  V  P  C  S  F  L  Y  S  V  H  V  I  S  L  C  P  V  L  K  D  L  D  *  S  F  W  I  V  C  Q  R  C  C  Q  T  A  Q   : G  A  T  N  G  D  A  W  S  S  *  F  Q  P  A  E  G  T  K  S  L  H  T  Y  C  S  C  L  W  R  S  L  H  W  C  I  D  S  F  G  R  L  D  G  S  D  W  I  R  N  W  N  P  S  C  S  H  N  H  L  P  V  F  *  D  I  R  E  G  E  G  H  *  T  R  H  V  W  F  V  G  C  S  V  Y  A  R  M  S  L  Q  A  K  R  A  M  *  *  T  C  W  L  I  M  D  R  Y  *  R  P  Q  V  F  P  V  K  F  C  K  F  F  F  L  F  L  T  V  L  M  S  A  R  M  F  Y  M  K  R  L  G  *  F  T  E  I  L  K  G  Y  F  T  *  Y  K  H  R  A  Q  T  S   </second_frame>
            <third_frame>   T  R  S  P  S  L  L  T  G  D  A  Y  T  *  I  R  Q  I  R  P  F  S  P  S  P  L  S  H  G  Q  N  P  T  N  R  S  I  A  R  R  R  N  R  A  N  N  S  P  R  T  S  P  D  R  R  Y  L   : *  I  V  L  L  I  V  N  N  G  R  R  I  Q  S  A  A  P  C  E  T  I  S  F  F  S  T  *  S  S  E  C  *  Q  E  G  S  I  Q  R  E  G  H  L  Y  C  N  C  A  C  Y  F  S  G  L  Q  S  A  P  S  L  W  H  T  L  Y  N  W  R  G  S  F  L  L  D  A  C  H  S  C  L  K  P  W  Y  S  H  G  T  W  N  Y  S  N  C  D  F  W  N  G  D  A  I  V  S  W  I  K  N  H  S  S  G  Q  Q  C  S  G  G  P  S  T  P  :  *  W  C  S  K  A  I  G  Y  P  D  C  C  R  *  G  S  C  L  C  P  V  G  D  V  W  Q  C  *  P  I  G  C  W  K  C  Y  P  H  Y  P  P  T  L  L  C  C  Y  H  C  H  V  L  R  *  T  S  S  E  R  I  W  S  W  L  W   : K  A  F  S  P  T  T  I  N  T  G  R  G  A  E  F  E  G  A  I  I  A  L  F  H  L  T  I  T  R  S  N  R  I  S  A  L  R  E  A  F  Y  R  Q  S  L  P  N  V  T  N  L  L  A  T  V  L  I  F  L  I  V  I  Y  F  Q  G  F  R  V  V  L  P  V  R  S  K  N  A  R  G  Q  Q  G  S  Y  P  I  K  L  F  Y  T  S  N  M  P  I  I  L  Q  S  A  L  V  S  N  L  Y  F  I  S  Q  :  L  L  Y  R  R  Y  G  G  N  F  I  V  D  M  I  G  T  W  K  E  S  E  Y  S  G  Q  S  V  P  V  A  G  L  A  Y  L  V  T  A  P  S  S :   L  A  E  M  V  S  H  P  F  H  A  L  F  Y  I  V  F  M  L  S  A  C  A  L  F  S  K  T  W  I  E  V  S  G  S  S  A  R  D  V  A  K  Q  L  K  :  E  Q  Q  M  V  M  P  G  H  R  D  S  N  L  Q  K  E  L  N  R  Y  I  P  T  A  A  A  F  G  G  V  C  I  G  A  L  T  V  L  A  D  L  M  G  A  I  G  S  G  T  G  I  L  L  A  V  T  I  I  Y  Q  Y  F  E  T  F  E  K  E  K  A  T  E  L  G  M  F  G  L  *  A  V  A  F  M  L  E  C  P  S  K  P  R  E  Q  C  S  E  L  V  G  L  *  W  I  D  I  R  G  H  K  F  F  L  L  N  F  V  S  F  F  F  C  F  *  L  C  *  *  A  P  E  C  F  T  *  K  D  *  V  N  L  Q  K  F  S  K  D  I  L  H  D  T  S  I  E  H  K  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31182" stop="31149"/>
                    <exon start="31013" stop="30676"/>
                    <exon start="30565" stop="30441"/>
                    <exon start="30306" stop="30171"/>
                    <exon start="29396" stop="29157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSERIWSWLWKAFSPTTINTGRGAEFEGAIIALFHLTITRSNRISALREAFYRQSLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRRYGGNFIVDMIGTWKESEYSGQSVPVAGLAYLVTAPSSLAEMVSHPFHALFYIVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADLMGAIGSGTGILLAVTIIYQYFETFEKEKATELGMFGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32127" stop="31858"/>
                    <exon start="31347" stop="31345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEGSIQREGHLYCNCACYFSGLQSAPSLWHTLYNWRGSFLLDACHSCLKPWYSHGTWNYSNCDFWNGDAIVSWIKNHSSGQQCSGGPSTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33638" e_stop="33472"/>
            <exon e_start="32225" e_stop="31858"/>
            <exon e_start="31347" e_stop="31296"/>
            <exon e_start="31211" e_stop="31120"/>
            <exon e_start="31030" e_stop="30676"/>
            <exon e_start="30565" e_stop="30441"/>
            <exon e_start="30306" e_stop="30171"/>
            <exon e_start="29396" e_stop="28916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="33638" e_stop="33472" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32225" e_stop="31858" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31347" e_stop="31296" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31295" i_stop="31212" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31211" e_stop="31120" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31030" e_stop="30676" e_length="355"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.895">
            <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30565" e_stop="30441" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.565">
            <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30306" e_stop="30171" e_length="136"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.897">
            <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="29396" e_stop="28916" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33638" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33635" stop="33472"/>
              <exon start="32225" stop="32192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33618" stop="33472"/>
              <exon start="32225" stop="31858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33567" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31296"/>
              <exon start="31211" stop="31120"/>
              <exon start="31030" stop="30816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32049" stop="31858"/>
              <exon start="31347" stop="31319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31192" stop="31120"/>
              <exon start="31030" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31180" stop="31120"/>
              <exon start="31030" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31180" stop="31120"/>
              <exon start="31030" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31180" stop="31120"/>
              <exon start="31030" stop="30676"/>
              <exon start="30565" stop="30452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31150" stop="31120"/>
              <exon start="31030" stop="30715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30988" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30976" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30922" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30904" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30900" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30847" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30832" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30832" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30816" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30795" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30793" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30713" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30705" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30699" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30513" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30511" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30499" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30447" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29379" stop="28916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29373" stop="28922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29318" stop="28956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29316" stop="28957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29303" stop="28953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593524" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29269" stop="28922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29260" stop="29102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29254" stop="28948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29187" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT : AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT : TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTT : GCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG : TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTACTATTACTAGATCTAATAGGATTAGTGCCTTGCGTGAGGCTTTCTACCGGCAAAGTCTCCCCAATGTGACAAATCTGCTTGCAACTGTGTTGATCTTCCTCATCGTTATCTACTTCCAAGGATTCCGTGTAGTTTTACCTGTTAGATCTAAGAATGCTCGTGGACAGCAAGGTTCTTACCCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG : TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG : CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG : GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAACAAGCTT</gDNA_template>
            <first_frame> F  S  I  S  V  N  W  *  R  L  H  I  N  P  S  D  P  P  L  L  S  L  S  S  L  S  W  S  K  P  Y  K  *  K  H  S  S  T  E  K  S  S  E  *  Q  S  T  D  I  S  R  S  S  L  P  L :   D  S  S  V  N  S  E  Q  W  E  E  D  S  E  C  C  T  L  *  N  H  F  F  L  F  Y  L  K  F  R  V  L  T  G  R  F  N  S  K  R  R  S  S  I  L  *  L  R  L  L  F  F  W  F  A  V  S  S  L  F  M  A  Y  T  L  Q  L  A  R  I  L  F  T  G  C  V  S  F  L  P  Q  T  V  V  Q  S  W  N  L  E  L  L  Q  L  *  L  L  E  W  *  C  N  C  *  L  D  Q  K  S  F  K  W  T  T  M  F  G  R  T  E  H  S   : L  M  V  L  K  S  Y  W  V  S  *  L  L  S  V  R  Q  L :   L  L  S  L  S  C  A  *  M  N  F  F  R  K  D  M  V  L  A  L  E  F  P  C  S  *  L  P  I  S   : V  K  A  L  S  G  K  H  L  V  P  Q  P  S  I  P  G  V  V  L  N  L  K  E  L  *  L  L  C  S  I  L  L  L  L  D  L  I  G  L  V  P  C  V  R  L  S  T  G  K  V  S  P  M  *  Q  I  C  L  Q  L  C  *  S  S  S  S  L  S  T  S  K  D  S  V  *  F  Y  L  L  D  L  R  M  L  V  D  S  K  V  L  T  Q  L  N  S  S  T  P  Q  T  C  L  L  F  C  S  P  H  L  S  Q  T  C  I  S  S  L  S :   C  S  T  G  D  M  E  E  I  S  S  W  I  *  *  E  L  G  K  N  L  N  I  L  D  N  L  F  L  L  L  V  L  L  T  L  S  L  R  H  Q   : A  W  Q  K  W  C  R  I  R  S  M  L  F  S  I  *  C  S  C  Y  Q  P  V  P  C  S  Q  R  P  G  L  K  F  L  D  R  L  P  E  M  L  P  N  S  S  R :   S  N  K  W  *  C  L  V  I  V  I  P  T  C  R  R  N  *  I  V  T  Y  L  L  Q  L  P  L  E  E  F  A  L  V  H  *  Q  F  W  Q  T  *  W  E  R  L  D  Q  E  L  E  S  F  L  Q  S  Q  S  F  T  S  I  L  R  H  S  R  R  R  R  P  L  N  *  A  C  L  V  C  R  L  *  R  L  C  *  N  V  P  P  S  Q  E  S  N  V  V  N  L  L  A  Y  N  G  *  I  L  E  A  T  S  F  S  C  *  I  L  *  V  F  F  F  V  F  N  C  A  D  E  R  P  N  V  L  H  E  K  T  R  L  I  Y  R  N  S  Q  R  I  F  Y  M  I  Q  A  S  S  T  N  K  L </first_frame>
            <second_frame>  S  P  S  L  L  T  G  D  A  Y  T  *  I  R  Q  I  R  P  F  S  P  S  P  L  S  H  G  Q  N  P  T  N  R  S  I  A  R  R  R  N  R  A  N  N  S  P  R  T  S  P  D  R  R  Y  L   : *  I  V  L  L  I  V  N  N  G  R  R  I  Q  S  A  A  P  C  E  T  I  S  F  F  S  T  *  S  S  E  C  *  Q  E  G  S  I  Q  R  E  G  H  L  Y  C  N  C  A  C  Y  F  S  G  L  Q  S  A  P  S  L  W  H  T  L  Y  N  W  R  G  S  F  L  L  D  A  C  H  S  C  L  K  P  W  Y  S  H  G  T  W  N  Y  S  N  C  D  F  W  N  G  D  A  I  V  S  W  I  K  N  H  S  S  G  Q  Q  C  S  G  G  P  S  T  P  :  *  W  C  S  K  A  I  G  Y  P  D  C  C  R  *  G  S   : C  C  Y  H  C  H  V  L  R  *  T  S  S  E  R  I  W  S  W  L  W  N  F  L  V  H  S  Y  Q  Y  L  :  *  K  H  Y  L  E  S  I  *  S  H  N  H  Q  Y  R  A  W  C  *  I  *  R  S  Y  N  C  S  V  P  S  Y  Y  Y  *  I  *  *  D  *  C  L  A  *  G  F  L  P  A  K  S  P  Q  C  D  K  S  A  C  N  C  V  D  L  P  H  R  Y  L  L  P  R  I  P  C  S  F  T  C  *  I  *  E  C  S  W  T  A  R  F  L  P  N  *  T  L  L  H  L  K  H  A  Y  Y  F  A  V  R  T  C  L  K  P  V  F  H  L  S   : V  A  L  Q  E  I  W  R  K  F  H  R  G  Y  D  R  N  L  E  R  I  *  I  F  W  T  I  C  S  C  C  W  S  C  L  P  C  H  C  A  I  K  :  L  G  R  N  G  V  A  S  V  P  C  S  F  L  Y  S  V  H  V  I  S  L  C  P  V  L  K  D  L  D  *  S  F  W  I  V  C  Q  R  C  C  Q  T  A  Q   : G  A  T  N  G  D  A  W  S  S  *  F  Q  P  A  E  G  T  K  S  L  H  T  Y  C  S  C  L  W  R  S  L  H  W  C  I  D  S  F  G  R  L  D  G  S  D  W  I  R  N  W  N  P  S  C  S  H  N  H  L  P  V  F  *  D  I  R  E  G  E  G  H  *  T  R  H  V  W  F  V  G  C  S  V  Y  A  R  M  S  L  Q  A  K  R  A  M  *  *  T  C  W  L  I  M  D  R  Y  *  R  P  Q  V  F  P  V  K  F  C  K  F  F  F  L  F  L  T  V  L  M  S  A  R  M  F  Y  M  K  R  L  G  *  F  T  E  I  L  K  G  Y  F  T  *  Y  K  H  R  A  Q  T  S   </second_frame>
            <third_frame>   L  H  L  C  *  L  V  T  L  T  H  K  S  V  R  S  A  P  S  L  P  L  L  S  L  M  V  K  T  L  Q  I  E  A  *  L  D  G  E  I  E  R  I  T  V  H  G  H  L  Q  I  V  A  T  S  :  R  *  F  C  *  *  *  T  M  G  G  G  F  R  V  L  H  L  V  K  P  F  L  S  F  L  P  E  V  Q  S  A  D  R  K  V  Q  F  K  E  K  V  I  Y  T  V  I  A  L  A  I  F  L  V  C  S  Q  L  P  L  Y  G  I  H  S  T  T  G  A  D  P  F  Y  W  M  R  V  I  L  A  S  N  R  G  T  V  M  E  L  G  I  T  P  I  V  T  S  G  M  V  M  Q  L  L  A  G  S  K  I  I  Q  V  D  N  N  V  R  E  D  R  A  L  L :   N  G  A  Q  K  L  L  G  I  L  I  A  V  G  E  A  V  :  A  A  I  I  V  M  C  L  D  E  L  L  Q  K  G  Y  G  L  G  S  G  I  S  L  F  I  A  T  N  I  C :   E  S  I  I  W  K  A  F  S  P  T  T  I  N  T  G  R  G  A  E  F  E  G  A  I  I  A  L  F  H  L  T  I  T  R  S  N  R  I  S  A  L  R  E  A  F  Y  R  Q  S  L  P  N  V  T  N  L  L  A  T  V  L  I  F  L  I  V  I  Y  F  Q  G  F  R  V  V  L  P  V  R  S  K  N  A  R  G  Q  Q  G  S  Y  P  I  K  L  F  Y  T  S  N  M  P  I  I  L  Q  S  A  L  V  S  N  L  Y  F  I  S  Q  :  L  L  Y  R  R  Y  G  G  N  F  I  V  D  M  I  G  T  W  K  E  S  E  Y  S  G  Q  S  V  P  V  A  G  L  A  Y  L  V  T  A  P  S  S :   L  A  E  M  V  S  H  P  F  H  A  L  F  Y  I  V  F  M  L  S  A  C  A  L  F  S  K  T  W  I  E  V  S  G  S  S  A  R  D  V  A  K  Q  L  K  :  E  Q  Q  M  V  M  P  G  H  R  D  S  N  L  Q  K  E  L  N  R  Y  I  P  T  A  A  A  F  G  G  V  C  I  G  A  L  T  V  L  A  D  L  M  G  A  I  G  S  G  T  G  I  L  L  A  V  T  I  I  Y  Q  Y  F  E  T  F  E  K  E  K  A  T  E  L  G  M  F  G  L  *  A  V  A  F  M  L  E  C  P  S  K  P  R  E  Q  C  S  E  L  V  G  L  *  W  I  D  I  R  G  H  K  F  F  L  L  N  F  V  S  F  F  F  C  F  *  L  C  *  *  A  P  E  C  F  T  *  K  D  *  V  N  L  Q  K  F  S  K  D  I  L  H  D  T  S  I  E  H  K  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32204" stop="31858"/>
                    <exon start="31347" stop="31296"/>
                    <exon start="31211" stop="31120"/>
                    <exon start="31030" stop="30676"/>
                    <exon start="30565" stop="30441"/>
                    <exon start="30306" stop="30171"/>
                    <exon start="29396" stop="29157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGGGFRVLHLVKPFLSFLPEVQSADRKVQFKEKVIYTVIALAIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLAGSKIIQVDNNVREDRALLNGAQKLLGILIAVGEAVAAIIVMCLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINTGRGAEFEGAIIALFHLTITRSNRISALREAFYRQSLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRRYGGNFIVDMIGTWKESEYSGQSVPVAGLAYLVTAPSSLAEMVSHPFHALFYIVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADLMGAIGSGTGILLAVTIIYQYFETFEKEKATELGMFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="33647" e_stop="33472"/>
            <exon e_start="32225" e_stop="31858"/>
            <exon e_start="31347" e_stop="31120"/>
            <exon e_start="31030" e_stop="30935"/>
            <exon e_start="30756" e_stop="30676"/>
            <exon e_start="30565" e_stop="30441"/>
            <exon e_start="30306" e_stop="30171"/>
            <exon e_start="29396" e_stop="28916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33647" e_stop="33472" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32225" e_stop="31858" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31857" i_stop="31348" i_length="510"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31347" e_stop="31120" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31119" i_stop="31031" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31030" e_stop="30935" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30934" i_stop="30757" i_length="178"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30756" e_stop="30676" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.895">
            <gDNA_intron_boundary i_start="30675" i_stop="30566" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30565" e_stop="30441" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.565">
            <gDNA_intron_boundary i_start="30440" i_stop="30307" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30306" e_stop="30171" e_length="136"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.897">
            <gDNA_intron_boundary i_start="30170" i_stop="29397" i_length="774"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="29396" e_stop="28916" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33647" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33645" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33639" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31120"/>
              <exon start="31030" stop="30963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33639" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31120"/>
              <exon start="31030" stop="30983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33638" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33635" stop="33472"/>
              <exon start="32225" stop="32192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33618" stop="33472"/>
              <exon start="32225" stop="31858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33582" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31120"/>
              <exon start="31030" stop="31017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33582" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33573" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31120"/>
              <exon start="31030" stop="30937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33556" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33554" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31120"/>
              <exon start="31030" stop="30985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33550" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33499" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31120"/>
              <exon start="31030" stop="30988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33499" stop="33472"/>
              <exon start="32225" stop="31858"/>
              <exon start="31347" stop="31149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32163" stop="31858"/>
              <exon start="31347" stop="31268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32049" stop="31858"/>
              <exon start="31347" stop="31319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30949" stop="30935"/>
              <exon start="30756" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30713" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30705" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30699" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30676"/>
              <exon start="30565" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30513" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="29214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30511" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30499" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30447" stop="30441"/>
              <exon start="30306" stop="30171"/>
              <exon start="29396" stop="28920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29379" stop="28916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29373" stop="28922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29318" stop="28956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29316" stop="28957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29303" stop="28953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593524" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29269" stop="28922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29260" stop="29102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29254" stop="28948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29187" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCACGCGTTCTCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT : AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCT : TAATGGTGCTCAAAAGCTATTGGGTATCCTGATTGCTGTCGGTGAGGCAGTTGCTTATGTCCTGTCGGGGATGTATGGCAGTGTTAGCCAATTGGGTGTTGGAAATGCTATCCTCATTATCCTCCAACTCTGCTTTGCTGCTATCATTGTCATGTGCTTAGATGAACTTCTTCAGAAAGGATATGGTCTTGGCTCTGGAATTTCCTTGTTCATAGCTACCAATATCTG : TGAAAGCATTATCTGGAAAGCATTTAGTCCCACAACCATCAATACCGGGCGTGGTGCTGAATTTGAAGGAGCTATAATTGCTCTGTTCCATCTTAC : CCAATTAAACTCTTCTACACCTCAAACATGCCTATTATTTTGCAGTCCGCACTTGTCTCAAACCTGTATTTCATCTCTCAG : TTGCTCTACAGGAGATATGGAGGAAATTTCATCGTGGATATGATAGGAACTTGGAAAGAATCTGAATATTCTGGACAATCTGTTCCTGTTGCTGGTCTTGCTTACCTTGTCACTGCGCCATCAAG : CTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAG : GAGCAACAAATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTGCCTTTGGAGGAGTTTGCATTGGTGCATTGACAGTTTTGGCAGACTTGATGGGAGCGATTGGATCAGGAACTGGAATCCTTCTTGCAGTCACAATCATTTACCAGTATTTTGAGACATTCGAGAAGGAGAAGGCCACTGAACTAGGCATGTTTGGTTTGTAGGCTGTAGCGTTTATGCTAGAATGTCCCTCCAAGCCAAGAGAGCAATGTAGTGAACTTGTTGGCTTATAATGGATAGATATTAGAGGCCACAAGTTTTTCCTGTTAAATTTTGTAAGTTTTTTTTTTTGTTTTTAACTGTGCTGATGAGCGCCCGAATGTTTTACATGAAAAGACTAGGTTAATTTACAGAAATTCTCAAAGGATATTTTACATGATACAAGCATCGAGCACAAACAAGCTT</gDNA_template>
            <first_frame> R  H  A  F  S  I  S  V  N  W  *  R  L  H  I  N  P  S  D  P  P  L  L  S  L  S  S  L  S  W  S  K  P  Y  K  *  K  H  S  S  T  E  K  S  S  E  *  Q  S  T  D  I  S  R  S  S  L  P  L :   D  S  S  V  N  S  E  Q  W  E  E  D  S  E  C  C  T  L  *  N  H  F  F  L  F  Y  L  K  F  R  V  L  T  G  R  F  N  S  K  R  R  S  S  I  L  *  L  R  L  L  F  F  W  F  A  V  S  S  L  F  M  A  Y  T  L  Q  L  A  R  I  L  F  T  G  C  V  S  F  L  P  Q  T  V  V  Q  S  W  N  L  E  L  L  Q  L  *  L  L  E  W  *  C  N  C  *  L  D  Q  K  S  F  K  W  T  T  M  F  G  R  T  E  H  S   : L  M  V  L  K  S  Y  W  V  S  *  L  L  S  V  R  Q  L  L  M  S  C  R  G  C  M  A  V  L  A  N  W  V  L  E  M  L  S  S  L  S  S  N  S  A  L  L  L  S  L  S  C  A  *  M  N  F  F  R  K  D  M  V  L  A  L  E  F  P  C  S  *  L  P  I  S   : V  K  A  L  S  G  K  H  L  V  P  Q  P  S  I  P  G  V  V  L  N  L  K  E  L  *  L  L  C  S  I  L   : P  N  *  T  L  L  H  L  K  H  A  Y  Y  F  A  V  R  T  C  L  K  P  V  F  H  L  S   : V  A  L  Q  E  I  W  R  K  F  H  R  G  Y  D  R  N  L  E  R  I  *  I  F  W  T  I  C  S  C  C  W  S  C  L  P  C  H  C  A  I  K  :  L  G  R  N  G  V  A  S  V  P  C  S  F  L  Y  S  V  H  V  I  S  L  C  P  V  L  K  D  L  D  *  S  F  W  I  V  C  Q  R  C  C  Q  T  A  Q   : G  A  T  N  G  D  A  W  S  S  *  F  Q  P  A  E  G  T  K  S  L  H  T  Y  C  S  C  L  W  R  S  L  H  W  C  I  D  S  F  G  R  L  D  G  S  D  W  I  R  N  W  N  P  S  C  S  H  N  H  L  P  V  F  *  D  I  R  E  G  E  G  H  *  T  R  H  V  W  F  V  G  C  S  V  Y  A  R  M  S  L  Q  A  K  R  A  M  *  *  T  C  W  L  I  M  D  R  Y  *  R  P  Q  V  F  P  V  K  F  C  K  F  F  F  L  F  L  T  V  L  M  S  A  R  M  F  Y  M  K  R  L  G  *  F  T  E  I  L  K  G  Y  F  T  *  Y  K  H  R  A  Q  T  S   </first_frame>
            <second_frame>  V  T  R  S  P  S  L  L  T  G  D  A  Y  T  *  I  R  Q  I  R  P  F  S  P  S  P  L  S  H  G  Q  N  P  T  N  R  S  I  A  R  R  R  N  R  A  N  N  S  P  R  T  S  P  D  R  R  Y  L   : *  I  V  L  L  I  V  N  N  G  R  R  I  Q  S  A  A  P  C  E  T  I  S  F  F  S  T  *  S  S  E  C  *  Q  E  G  S  I  Q  R  E  G  H  L  Y  C  N  C  A  C  Y  F  S  G  L  Q  S  A  P  S  L  W  H  T  L  Y  N  W  R  G  S  F  L  L  D  A  C  H  S  C  L  K  P  W  Y  S  H  G  T  W  N  Y  S  N  C  D  F  W  N  G  D  A  I  V  S  W  I  K  N  H  S  S  G  Q  Q  C  S  G  G  P  S  T  P  :  *  W  C  S  K  A  I  G  Y  P  D  C  C  R  *  G  S  C  L  C  P  V  G  D  V  W  Q  C  *  P  I  G  C  W  K  C  Y  P  H  Y  P  P  T  L  L  C  C  Y  H  C  H  V  L  R  *  T  S  S  E  R  I  W  S  W  L  W  N  F  L  V  H  S  Y  Q  Y  L  :  *  K  H  Y  L  E  S  I  *  S  H  N  H  Q  Y  R  A  W  C  *  I  *  R  S  Y  N  C  S  V  P  S  Y  :  P  I  K  L  F  Y  T  S  N  M  P  I  I  L  Q  S  A  L  V  S  N  L  Y  F  I  S  Q  :  L  L  Y  R  R  Y  G  G  N  F  I  V  D  M  I  G  T  W  K  E  S  E  Y  S  G  Q  S  V  P  V  A  G  L  A  Y  L  V  T  A  P  S  S :   L  A  E  M  V  S  H  P  F  H  A  L  F  Y  I  V  F  M  L  S  A  C  A  L  F  S  K  T  W  I  E  V  S  G  S  S  A  R  D  V  A  K  Q  L  K  :  E  Q  Q  M  V  M  P  G  H  R  D  S  N  L  Q  K  E  L  N  R  Y  I  P  T  A  A  A  F  G  G  V  C  I  G  A  L  T  V  L  A  D  L  M  G  A  I  G  S  G  T  G  I  L  L  A  V  T  I  I  Y  Q  Y  F  E  T  F  E  K  E  K  A  T  E  L  G  M  F  G  L  *  A  V  A  F  M  L  E  C  P  S  K  P  R  E  Q  C  S  E  L  V  G  L  *  W  I  D  I  R  G  H  K  F  F  L  L  N  F  V  S  F  F  F  C  F  *  L  C  *  *  A  P  E  C  F  T  *  K  D  *  V  N  L  Q  K  F  S  K  D  I  L  H  D  T  S  I  E  H  K  Q  A  </second_frame>
            <third_frame>   S  R  V  L  H  L  C  *  L  V  T  L  T  H  K  S  V  R  S  A  P  S  L  P  L  L  S  L  M  V  K  T  L  Q  I  E  A  *  L  D  G  E  I  E  R  I  T  V  H  G  H  L  Q  I  V  A  T  S  :  R  *  F  C  *  *  *  T  M  G  G  G  F  R  V  L  H  L  V  K  P  F  L  S  F  L  P  E  V  Q  S  A  D  R  K  V  Q  F  K  E  K  V  I  Y  T  V  I  A  L  A  I  F  L  V  C  S  Q  L  P  L  Y  G  I  H  S  T  T  G  A  D  P  F  Y  W  M  R  V  I  L  A  S  N  R  G  T  V  M  E  L  G  I  T  P  I  V  T  S  G  M  V  M  Q  L  L  A  G  S  K  I  I  Q  V  D  N  N  V  R  E  D  R  A  L  L :   N  G  A  Q  K  L  L  G  I  L  I  A  V  G  E  A  V  A  Y  V  L  S  G  M  Y  G  S  V  S  Q  L  G  V  G  N  A  I  L  I  I  L  Q  L  C  F  A  A  I  I  V  M  C  L  D  E  L  L  Q  K  G  Y  G  L  G  S  G  I  S  L  F  I  A  T  N  I  C :   E  S  I  I  W  K  A  F  S  P  T  T  I  N  T  G  R  G  A  E  F  E  G  A  I  I  A  L  F  H  L  T :   Q  L  N  S  S  T  P  Q  T  C  L  L  F  C  S  P  H  L  S  Q  T  C  I  S  S  L  S :   C  S  T  G  D  M  E  E  I  S  S  W  I  *  *  E  L  G  K  N  L  N  I  L  D  N  L  F  L  L  L  V  L  L  T  L  S  L  R  H  Q   : A  W  Q  K  W  C  R  I  R  S  M  L  F  S  I  *  C  S  C  Y  Q  P  V  P  C  S  Q  R  P  G  L  K  F  L  D  R  L  P  E  M  L  P  N  S  S  R :   S  N  K  W  *  C  L  V  I  V  I  P  T  C  R  R  N  *  I  V  T  Y  L  L  Q  L  P  L  E  E  F  A  L  V  H  *  Q  F  W  Q  T  *  W  E  R  L  D  Q  E  L  E  S  F  L  Q  S  Q  S  F  T  S  I  L  R  H  S  R  R  R  R  P  L  N  *  A  C  L  V  C  R  L  *  R  L  C  *  N  V  P  P  S  Q  E  S  N  V  V  N  L  L  A  Y  N  G  *  I  L  E  A  T  S  F  S  C  *  I  L  *  V  F  F  F  V  F  N  C  A  D  E  R  P  N  V  L  H  E  K  T  R  L  I  Y  R  N  S  Q  R  I  F  Y  M  I  Q  A  S  S  T  N  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32204" stop="31858"/>
                    <exon start="31347" stop="31120"/>
                    <exon start="31030" stop="30935"/>
                    <exon start="30756" stop="30676"/>
                    <exon start="30565" stop="30523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGGGFRVLHLVKPFLSFLPEVQSADRKVQFKEKVIYTVIALAIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLAGSKIIQVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIILQLCFAAIIVMCLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINTGRGAEFEGAIIALFHLTQLNSSTPQTCLLFCSPHLSQTCISSLSCSTGDMEEISSWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="33635" e_stop="33472"/>
            <exon e_start="32225" e_stop="31641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.980"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="33635" e_stop="33472" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33471" i_stop="32226" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="0.896">
            <gDNA_exon_boundary e_start="32225" e_stop="31641" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33635" stop="33472"/>
              <exon start="32225" stop="32192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33618" stop="33472"/>
              <exon start="32225" stop="31641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33618" stop="33472"/>
              <exon start="32225" stop="31858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATCTCTGTTAACTGGTGACGCTTACACATAAATCCGTCAGATCCGCCCCTTCTCTCCCTCTCCTCTCTCTCATGGTCAAAACCCTACAAATAGAAGCATAGCTCGACGGAGAAATCGAGCGAATAACAGTCCACGGACATCTCCAGATCGTCGCTACCTCT : AGATAGTTCTGTTAATAGTGAACAATGGGAGGAGGATTCAGAGTGCTGCACCTTGTGAAACCATTTCTTTCTTTTCTACCTGAAGTTCAGAGTGCTGACAGGAAGGTTCAATTCAAAGAGAAGGTCATCTATACTGTAATTGCGCTTGCTATTTTTCTGGTTTGCAGTCAGCTCCCTCTTTATGGCATACACTCTACAACTGGCGCGGATCCTTTTTACTGGATGCGTGTCATTCTTGCCTCAAACCGTGGTACAGTCATGGAACTTGGAATTACTCCAATTGTGACTTCTGGAATGGTGATGCAATTGTTAGCTGGATCAAAAATCATTCAAGTGGACAACAATGTTCGGGAGGACCGAGCACTCCTGTAAGTTTGTTTTTAAGATTTTTATTTCTTTAGTTGTTTAACAACATATGTATATTGCATCAGTTCTATTTTGTTAGTTGTCTATTGTTTAAATTCCATATGCAGTGGTAATAGTATGGTTTGGAACCTTCAGAAAAGGATATTGTTTGGAACTTATGGGGATGATATGATCTATAACTTTAATGCTGAAATCATTTTGCAGAACCTAGATTAGTTG</gDNA_template>
            <first_frame> S  I  S  V  N  W  *  R  L  H  I  N  P  S  D  P  P  L  L  S  L  S  S  L  S  W  S  K  P  Y  K  *  K  H  S  S  T  E  K  S  S  E  *  Q  S  T  D  I  S  R  S  S  L  P  L :   D  S  S  V  N  S  E  Q  W  E  E  D  S  E  C  C  T  L  *  N  H  F  F  L  F  Y  L  K  F  R  V  L  T  G  R  F  N  S  K  R  R  S  S  I  L  *  L  R  L  L  F  F  W  F  A  V  S  S  L  F  M  A  Y  T  L  Q  L  A  R  I  L  F  T  G  C  V  S  F  L  P  Q  T  V  V  Q  S  W  N  L  E  L  L  Q  L  *  L  L  E  W  *  C  N  C  *  L  D  Q  K  S  F  K  W  T  T  M  F  G  R  T  E  H  S  C  K  F  V  F  K  I  F  I  S  L  V  V  *  Q  H  M  Y  I  A  S  V  L  F  C  *  L  S  I  V  *  I  P  Y  A  V  V  I  V  W  F  G  T  F  R  K  G  Y  C  L  E  L  M  G  M  I  *  S  I  T  L  M  L  K  S  F  C  R  T  *  I  S   </first_frame>
            <second_frame>  P  S  L  L  T  G  D  A  Y  T  *  I  R  Q  I  R  P  F  S  P  S  P  L  S  H  G  Q  N  P  T  N  R  S  I  A  R  R  R  N  R  A  N  N  S  P  R  T  S  P  D  R  R  Y  L   : *  I  V  L  L  I  V  N  N  G  R  R  I  Q  S  A  A  P  C  E  T  I  S  F  F  S  T  *  S  S  E  C  *  Q  E  G  S  I  Q  R  E  G  H  L  Y  C  N  C  A  C  Y  F  S  G  L  Q  S  A  P  S  L  W  H  T  L  Y  N  W  R  G  S  F  L  L  D  A  C  H  S  C  L  K  P  W  Y  S  H  G  T  W  N  Y  S  N  C  D  F  W  N  G  D  A  I  V  S  W  I  K  N  H  S  S  G  Q  Q  C  S  G  G  P  S  T  P  V  S  L  F  L  R  F  L  F  L  *  L  F  N  N  I  C  I  L  H  Q  F  Y  F  V  S  C  L  L  F  K  F  H  M  Q  W  *  *  Y  G  L  E  P  S  E  K  D  I  V  W  N  L  W  G  *  Y  D  L  *  L  *  C  *  N  H  F  A  E  P  R  L  V  </second_frame>
            <third_frame>   H  L  C  *  L  V  T  L  T  H  K  S  V  R  S  A  P  S  L  P  L  L  S  L  M  V  K  T  L  Q  I  E  A  *  L  D  G  E  I  E  R  I  T  V  H  G  H  L  Q  I  V  A  T  S  :  R  *  F  C  *  *  *  T  M  G  G  G  F  R  V  L  H  L  V  K  P  F  L  S  F  L  P  E  V  Q  S  A  D  R  K  V  Q  F  K  E  K  V  I  Y  T  V  I  A  L  A  I  F  L  V  C  S  Q  L  P  L  Y  G  I  H  S  T  T  G  A  D  P  F  Y  W  M  R  V  I  L  A  S  N  R  G  T  V  M  E  L  G  I  T  P  I  V  T  S  G  M  V  M  Q  L  L  A  G  S  K  I  I  Q  V  D  N  N  V  R  E  D  R  A  L  L  *  V  C  F  *  D  F  Y  F  F  S  C  L  T  T  Y  V  Y  C  I  S  S  I  L  L  V  V  Y  C  L  N  S  I  C  S  G  N  S  M  V  W  N  L  Q  K  R  I  L  F  G  T  Y  G  D  D  M  I  Y  N  F  N  A  E  I  I  L  Q  N  L  D  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32204" stop="31854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGGGFRVLHLVKPFLSFLPEVQSADRKVQFKEKVIYTVIALAIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLAGSKIIQVDNNVREDRALL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32127" stop="31825"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEGSIQREGHLYCNCACYFSGLQSAPSLWHTLYNWRGSFLLDACHSCLKPWYSHGTWNYSNCDFWNGDAIVSWIKNHSSGQQCSGGPSTPVSLFLRFLFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31841" stop="31644"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFYFFSCLTTYVYCISSILLVVYCLNSICSGNSMVWNLQKRILFGTYGDDMIYNFNAEIILQNLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="30405" e_stop="29792"/>
            <exon e_start="29594" e_stop="29563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="30405" e_stop="29792" e_length="614"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29791" i_stop="29595" i_length="197"/>
          </intron>
          <exon e_serial="2" e_score="0.812">
            <gDNA_exon_boundary e_start="29594" e_stop="29563" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30405" stop="29792"/>
              <exon start="29594" stop="29563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTGTGTAGAAGTTCTTCACAAGTCTGTTCAGCCTCATATCTTGTGCTTCTTACTTCTGTAAATGCCATTGACGGTCAACTCTTTAATGTATTTCAGCTTGGCAGAAATGGTGTCGCATCCGTTCCATGCTCTTTTCTATATAGTGTTCATGTTATCAGCCTGTGCCCTGTTCTCAAAGACCTGGATTGAAGTTTCTGGATCGTCTGCCAGAGATGTTGCCAAACAGCTCAAGGTAAATGATCTTGTTGCCTTTGTTTTGTGAACTTTTCCCCGTTCTATTTGTTTGTCCCAAAGTGATTTGTCAGTAAAATTAACTGAAACTTAACTTCGTTACTTTTAGTGGTTGTGCTGCTGTGTTATGGATGGCAATCAGAATGAGAACTTCTTCAGTGGGGTTCTAACTATCCCCCATGCTGTAGATTATGAGAAGAAATAATTGCTATAGATTATTATTGAATGACTTATCAAGATCTCGTTATTTCTAGTCAAAACAGGTTAAAAGAGACAACATCATTCTTCTTCCCATTACCCATAATATACTATTGCCGTTTTGTAACATCTGACAGTAGTATCCCACATCTCTGAATTTTGAATCACAGTAAAACATTGGT : TTCTTGGAGCTTGTTTGCCTCACACAACCCAT</gDNA_template>
            <first_frame> I  L  C  R  S  S  S  Q  V  C  S  A  S  Y  L  V  L  L  T  S  V  N  A  I  D  G  Q  L  F  N  V  F  Q  L  G  R  N  G  V  A  S  V  P  C  S  F  L  Y  S  V  H  V  I  S  L  C  P  V  L  K  D  L  D  *  S  F  W  I  V  C  Q  R  C  C  Q  T  A  Q  G  K  *  S  C  C  L  C  F  V  N  F  S  P  F  Y  L  F  V  P  K  *  F  V  S  K  I  N  *  N  L  T  S  L  L  L  V  V  V  L  L  C  Y  G  W  Q  S  E  *  E  L  L  Q  W  G  S  N  Y  P  P  C  C  R  L  *  E  E  I  I  A  I  D  Y  Y  *  M  T  Y  Q  D  L  V  I  S  S  Q  N  R  L  K  E  T  T  S  F  F  F  P  L  P  I  I  Y  Y  C  R  F  V  T  S  D  S  S  I  P  H  L  *  I  L  N  H  S  K  T  L  V :   S  W  S  L  F  A  S  H  N  P  </first_frame>
            <second_frame>  F  C  V  E  V  L  H  K  S  V  Q  P  H  I  L  C  F  L  L  L  *  M  P  L  T  V  N  S  L  M  Y  F  S  L  A  E  M  V  S  H  P  F  H  A  L  F  Y  I  V  F  M  L  S  A  C  A  L  F  S  K  T  W  I  E  V  S  G  S  S  A  R  D  V  A  K  Q  L  K  V  N  D  L  V  A  F  V  L  *  T  F  P  R  S  I  C  L  S  Q  S  D  L  S  V  K  L  T  E  T  *  L  R  Y  F  *  W  L  C  C  C  V  M  D  G  N  Q  N  E  N  F  F  S  G  V  L  T  I  P  H  A  V  D  Y  E  K  K  *  L  L  *  I  I  I  E  *  L  I  K  I  S  L  F  L  V  K  T  G  *  K  R  Q  H  H  S  S  S  H  Y  P  *  Y  T  I  A  V  L  *  H  L  T  V  V  S  H  I  S  E  F  *  I  T  V  K  H  W   : F  L  G  A  C  L  P  H  T  T  H </second_frame>
            <third_frame>   F  V  *  K  F  F  T  S  L  F  S  L  I  S  C  A  S  Y  F  C  K  C  H  *  R  S  T  L  *  C  I  S  A  W  Q  K  W  C  R  I  R  S  M  L  F  S  I  *  C  S  C  Y  Q  P  V  P  C  S  Q  R  P  G  L  K  F  L  D  R  L  P  E  M  L  P  N  S  S  R  *  M  I  L  L  P  L  F  C  E  L  F  P  V  L  F  V  C  P  K  V  I  C  Q  *  N  *  L  K  L  N  F  V  T  F  S  G  C  A  A  V  L  W  M  A  I  R  M  R  T  S  S  V  G  F  *  L  S  P  M  L  *  I  M  R  R  N  N  C  Y  R  L  L  L  N  D  L  S  R  S  R  Y  F  *  S  K  Q  V  K  R  D  N  I  I  L  L  P  I  T  H  N  I  L  L  P  F  C  N  I  *  Q  *  Y  P  T  S  L  N  F  E  S  Q  *  N  I  G  :  F  L  E  L  V  C  L  T  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30341" stop="30141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPLTVNSLMYFSLAEMVSHPFHALFYIVFMLSACALFSKTWIEVSGSSARDVAKQLKVNDLVAFVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="28963" PGL_stop="29398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28963" e_stop="29398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="28963" e_stop="29398" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="29398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCTGTAAATTAACCTAGTCTTTTCATGTAAAACATTCGGGCGCTCATCAGCACAGTTAAAAACAAAAAAAAAAACTTACAAAATTTAACAGGAAAAACTTGTGGCCTCTAATATCTATCCATTATAAGCCAACAAGTTCACTACATTGCTCTCTTGGCTTGGAGGGACATTCTAGCATAAACGCTACAGCCTACAAACCAAACATGCCTAGTTCAGTGGCCTTCTCCTTCTCGAATGTCTCAAAATACTGGTAAATGATTGTGACTGCAAGAAGGATTCCAGTTCCTGATCCAATCGCTCCCATCAAGTCTGCCAAAACTGTCAATGCACCAATGCAAACTCCTCCAAAGGCAGCTGCAGTAGGTATGTAACGATTTAGTTCCTTCTGCAGGTTGGAATCACGATGACCAGGCATCACCATTTGTTGCTCCT</gDNA_template>
            <first_frame> N  F  C  K  L  T  *  S  F  H  V  K  H  S  G  A  H  Q  H  S  *  K  Q  K  K  K  L  T  K  F  N  R  K  N  L  W  P  L  I  S  I  H  Y  K  P  T  S  S  L  H  C  S  L  G  L  E  G  H  S  S  I  N  A  T  A  Y  K  P  N  M  P  S  S  V  A  F  S  F  S  N  V  S  K  Y  W  *  M  I  V  T  A  R  R  I  P  V  P  D  P  I  A  P  I  K  S  A  K  T  V  N  A  P  M  Q  T  P  P  K  A  A  A  V  G  M  *  R  F  S  S  F  C  R  L  E  S  R  *  P  G  I  T  I  C  C  S  </first_frame>
            <second_frame>  I  S  V  N  *  P  S  L  F  M  *  N  I  R  A  L  I  S  T  V  K  N  K  K  K  N  L  Q  N  L  T  G  K  T  C  G  L  *  Y  L  S  I  I  S  Q  Q  V  H  Y  I  A  L  L  A  W  R  D  I  L  A  *  T  L  Q  P  T  N  Q  T  C  L  V  Q  W  P  S  P  S  R  M  S  Q  N  T  G  K  *  L  *  L  Q  E  G  F  Q  F  L  I  Q  S  L  P  S  S  L  P  K  L  S  M  H  Q  C  K  L  L  Q  R  Q  L  Q  *  V  C  N  D  L  V  P  S  A  G  W  N  H  D  D  Q  A  S  P  F  V  A  P </second_frame>
            <third_frame>   F  L  *  I  N  L  V  F  S  C  K  T  F  G  R  S  S  A  Q  L  K  T  K  K  K  T  Y  K  I  *  Q  E  K  L  V  A  S  N  I  Y  P  L  *  A  N  K  F  T  T  L  L  S  W  L  G  G  T  F  *  H  K  R  Y  S  L  Q  T  K  H  A  *  F  S  G  L  L  L  L  E  C  L  K  I  L  V  N  D  C  D  C  K  K  D  S  S  S  *  S  N  R  S  H  Q  V  C  Q  N  C  Q  C  T  N  A  N  S  S  K  G  S  C  S  R  Y  V  T  I  *  F  L  L  Q  V  G  I  T  M  T  R  H  H  H  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29026" stop="29220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKKKLTKFNRKNLWPLISIHYKPTSSLHCSLGLEGHSSINATAYKPNMPSSVAFSFSNVSKYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="36087" PGL_stop="42824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36087" e_stop="36294"/>
            <exon e_start="37311" e_stop="37576"/>
            <exon e_start="39243" e_stop="39358"/>
            <exon e_start="42781" e_stop="42824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.982" e_score="0.957"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36087" e_stop="36294" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.805">
            <gDNA_intron_boundary i_start="36295" i_stop="37310" i_length="1016"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37311" e_stop="37576" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37577" i_stop="39242" i_length="1666"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="39243" e_stop="39358" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.982">
            <gDNA_intron_boundary i_start="39359" i_stop="42780" i_length="3422"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42781" e_stop="42824" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36087" stop="36294"/>
              <exon start="37311" stop="37576"/>
              <exon start="39243" stop="39358"/>
              <exon start="42781" stop="42824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTACCCGCAATCCCCAACCCGGCAAACCCCTAATCTTCATCATTTTCTTCAGGATTTGACTCTAATCGTGAACAATCTAGGGCTGGAATAGAGCGGTTTTCGCAGTAGTAATCATGAATATCTTCAGACTGGCCGGAGACATGACACATTTGATTAGTGTCTTAGTTCTCCTCCTGAAAATCTATGCTACCAAATCATGCTCAG : GAATATCATTGAAGACGCAAGAGTTATATGCTATTGTGTTTGTGGCTCGGTATCTGGATTTGTTCACAGACTTCATCTCTCTTTACAACACTGTGATGAAACTGGTTTTTATTGGGAGCTCCTTGGCCATTGTCTGGTGTATGAGGTACCATCGAGTTGTTAGGCGCTCATATGACCGTGAGCTAGACACTTTTCGCTATTGGATTCTTCTGGGGGCGTGTTTTGTTTTGGCACTTGTTCTTCATGAGAAGTTTACCCTTCAAGAG : GTGTTCTGGGCTTTCTCAATATACCTAGAGGCAGTTGCCATTCTTCCCCAATTGGTGCTCTTGCAAAGAAGTGGAAATGTTGATAATCTGACTGGACAATATGTGTTCTTTCTTGG : GGCCTACCGTGCATTTTACATCTTAAACTGGATTTACCGCTATC</gDNA_template>
            <first_frame> V  S  T  R  N  P  Q  P  G  K  P  L  I  F  I  I  F  F  R  I  *  L  *  S  *  T  I  *  G  W  N  R  A  V  F  A  V  V  I  M  N  I  F  R  L  A  G  D  M  T  H  L  I  S  V  L  V  L  L  L  K  I  Y  A  T  K  S  C  S   : G  I  S  L  K  T  Q  E  L  Y  A  I  V  F  V  A  R  Y  L  D  L  F  T  D  F  I  S  L  Y  N  T  V  M  K  L  V  F  I  G  S  S  L  A  I  V  W  C  M  R  Y  H  R  V  V  R  R  S  Y  D  R  E  L  D  T  F  R  Y  W  I  L  L  G  A  C  F  V  L  A  L  V  L  H  E  K  F  T  L  Q  E  :  V  F  W  A  F  S  I  Y  L  E  A  V  A  I  L  P  Q  L  V  L  L  Q  R  S  G  N  V  D  N  L  T  G  Q  Y  V  F  F  L  G :   A  Y  R  A  F  Y  I  L  N  W  I  Y  R  Y  </first_frame>
            <second_frame>  F  L  P  A  I  P  N  P  A  N  P  *  S  S  S  F  S  S  G  F  D  S  N  R  E  Q  S  R  A  G  I  E  R  F  S  Q  *  *  S  *  I  S  S  D  W  P  E  T  *  H  I  *  L  V  S  *  F  S  S  *  K  S  M  L  P  N  H  A  Q  :  E  Y  H  *  R  R  K  S  Y  M  L  L  C  L  W  L  G  I  W  I  C  S  Q  T  S  S  L  F  T  T  L  *  *  N  W  F  L  L  G  A  P  W  P  L  S  G  V  *  G  T  I  E  L  L  G  A  H  M  T  V  S  *  T  L  F  A  I  G  F  F  W  G  R  V  L  F  W  H  L  F  F  M  R  S  L  P  F  K  R :   C  S  G  L  S  Q  Y  T  *  R  Q  L  P  F  F  P  N  W  C  S  C  K  E  V  E  M  L  I  I  *  L  D  N  M  C  S  F  L   : G  P  T  V  H  F  T  S  *  T  G  F  T  A  I </second_frame>
            <third_frame>   F  Y  P  Q  S  P  T  R  Q  T  P  N  L  H  H  F  L  Q  D  L  T  L  I  V  N  N  L  G  L  E  *  S  G  F  R  S  S  N  H  E  Y  L  Q  T  G  R  R  H  D  T  F  D  *  C  L  S  S  P  P  E  N  L  C  Y  Q  I  M  L  R :   N  I  I  E  D  A  R  V  I  C  Y  C  V  C  G  S  V  S  G  F  V  H  R  L  H  L  S  L  Q  H  C  D  E  T  G  F  Y  W  E  L  L  G  H  C  L  V  Y  E  V  P  S  S  C  *  A  L  I  *  P  *  A  R  H  F  S  L  L  D  S  S  G  G  V  F  C  F  G  T  C  S  S  *  E  V  Y  P  S  R   : G  V  L  G  F  L  N  I  P  R  G  S  C  H  S  S  P  I  G  A  L  A  K  K  W  K  C  *  *  S  D  W  T  I  C  V  L  S  W  :  G  L  P  C  I  L  H  L  K  L  D  L  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36171" stop="36294"/>
                    <exon start="37311" stop="37576"/>
                    <exon start="39243" stop="39358"/>
                    <exon start="42781" stop="42823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWNRAVFAVVIMNIFRLAGDMTHLISVLVLLLKIYATKSCSGISLKTQELYAIVFVARYLDLFTDFISLYNTVMKLVFIGSSLAIVWCMRYHRVVRRSYDRELDTFRYWILLGACFVLALVLHEKFTLQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYRY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="51317" PGL_stop="42583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51317" e_stop="51268"/>
            <exon e_start="50667" e_stop="50522"/>
            <exon e_start="50401" e_stop="50220"/>
            <exon e_start="49579" e_stop="49443"/>
            <exon e_start="49077" e_stop="48912"/>
            <exon e_start="48795" e_stop="48679"/>
            <exon e_start="44413" e_stop="44253"/>
            <exon e_start="44111" e_stop="43688"/>
            <exon e_start="42595" e_stop="42583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.640" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.252" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.329" acc_prob="0.695" e_score="0.993"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51317" e_stop="51268" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.640">
            <gDNA_intron_boundary i_start="51267" i_stop="50668" i_length="600"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50667" e_stop="50522" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="50521" i_stop="50402" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50401" e_stop="50220" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="50219" i_stop="49580" i_length="640"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49579" e_stop="49443" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.252" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49077" e_stop="48912" e_length="166"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.860">
            <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48795" e_stop="48679" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.959">
            <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44253" e_length="161"/>
          </exon>
          <intron i_serial="7" don_prob="0.827" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="44111" e_stop="43688" e_length="424"/>
          </exon>
          <intron i_serial="8" don_prob="0.329" acc_prob="0.695">
            <gDNA_intron_boundary i_start="43687" i_stop="42596" i_length="1092"/>
          </intron>
          <exon e_serial="9" e_score="0.692">
            <gDNA_exon_boundary e_start="42595" e_stop="42583" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51317" stop="51268"/>
              <exon start="50667" stop="50522"/>
              <exon start="50401" stop="50220"/>
              <exon start="49579" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49579" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49533" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49076" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="44070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49051" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43688"/>
              <exon start="42595" stop="42583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48741" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTCCAGTTGCAGCTAGCCGCAAAATCCATCGTCTCTTCTTTCAAAGTG : ATTTCACATATACCAGTTGTTAGCTTTGGACACAAAAGATCGTTAAAAATCTACAGTGCGAAAATGGAGCTCTCAATCACACAACCTGATGATTGGCATCTTCATCTCCGTGATGGTGATGTTCTTAAGGCAGTTGTCTCTCACAG : TGCACATCACTTTGGGAGGGCAATAGTCATGCCAAATTTGAAGCCTCCTATCACTACCACTGCTGCTGCTGTAGCATACCGGGAGGCGATATTGAAATCTTTACCTGCTGATAGTGATTTCAACCCTCTTATGACACTTTATTTGACAGATACAACCAGTCCTATGGAAATCAAACTAGCAA : GAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTG : GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG : GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA : GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG : GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAG : AGAAACAAAACTA</gDNA_template>
            <first_frame> A  S  S  C  S  *  P  Q  N  P  S  S  L  L  S  K  * :   F  H  I  Y  Q  L  L  A  L  D  T  K  D  R  *  K  S  T  V  R  K  W  S  S  Q  S  H  N  L  M  I  G  I  F  I  S  V  M  V  M  F  L  R  Q  L  S  L  T   : V  H  I  T  L  G  G  Q  *  S  C  Q  I  *  S  L  L  S  L  P  L  L  L  L  *  H  T  G  R  R  Y  *  N  L  Y  L  L  I  V  I  S  T  L  L  *  H  F  I  *  Q  I  Q  P  V  L  W  K  S  N  *  Q  :  E  R  A  R  S  Y  L  G  *  S  C  T  L  L  V  P  R  Q  I  L  K  M  E  *  L  I  F  L  G  S  V  Y  Q  F  Y  K  K  W  L  S  I  I  C  L  C  W :   F  M  E  R  L  L  I  L  R  L  T  C  L  I  E  K  R  Y  S  L  K  R  F  *  D  L  W  C  R  N  F  H  D  *  R  S  *  W  S  M  S  P  P  W  M  L  L  S  L  L  N  L  A  V  K  :  D  L  L  Q  R  L  S  P  H  N  I  L  F  *  T  G  I  L  S  S  K  G  A  Y  N  R  I  I  T  A  F  Q  S  S  K  E  R  S  T  :  G  R  H  L  C  Q  L  *  Q  V  E  V  K  D  F  F  L  G  L  I  V  L  L  M  I  D  E  E  K  N  V  L  V  D  V  L  V  F  T  M  L  L  *  P  Y  Q  Y  M  Q  R  C  L  K  R :   K  M  H  L  T  S  S  K  H  L  P  A  S  M  D  Q  T  F  M  G  F  R  G  T  T  Q  R  L  S  *  V  R  H  H  G  R  Y  P  N  P  F  H  M  H  Q  E  I  *  F  P  C  L  L  V  K  C  S  T  G  C  R  L  L  S  E  K  G  K  K  K  E  I  P  I  L  I  C  C  S  C  T  V  I  L  *  F  N  *  R  Y  R  V  Q  V  C  H  L  S  F  H  V  L  D  I  I  A  M  I  I  I  E  T  V  S  F  L  Y  V  T  E  L  K  L  *  F  D  P  L  *  L  I  L  N  K  D  E  V  *  Y  N  K  :  R  N  K  T  </first_frame>
            <second_frame>  P  P  V  A  A  S  R  K  I  H  R  L  F  F  Q  S   : D  F  T  Y  T  S  C  *  L  W  T  Q  K  I  V  K  N  L  Q  C  E  N  G  A  L  N  H  T  T  *  *  L  A  S  S  S  P  *  W  *  C  S  *  G  S  C  L  S  Q  :  C  T  S  L  W  E  G  N  S  H  A  K  F  E  A  S  Y  H  Y  H  C  C  C  C  S  I  P  G  G  D  I  E  I  F  T  C  *  *  *  F  Q  P  S  Y  D  T  L  F  D  R  Y  N  Q  S  Y  G  N  Q  T  S  K :   R  E  P  G  R  I  W  G  E  V  V  P  C  W  C  H  D  K  F  S  R  W  S  D  *  S  F  W  E  V  F  T  S  S  T  R  N  G  *  A  *  Y  A  F  A   : G  S  W  R  G  Y  *  S  *  G  *  H  V  *  *  R  K  G  I  H  *  N  G  S  K  T  F  G  A  E  I  S  T  I  E  G  R  D  G  A  C  H  H  H  G  C  C  *  V  C  *  I  L  Q  *  R :   I  C  C  S  D  C  H  P  T  T  S  C  F  K  Q  E  F  S  L  P  R  G  L  T  T  A  *  L  L  P  S  S  P  Q  K  R  D  P  Q :   G  G  T  C  V  S  C  N  K  W  K  *  K  I  F  S  W  D  *  *  C  S  S  *  *  T  K  K  R  M  F  L  W  M  C  W  Y  L  Q  C  S  C  S  L  I  S  I  C  K  G  V  *  K   : G  K  C  T  *  Q  A  R  S  I  Y  Q  L  Q  W  T  R  L  L  W  A  S  E  E  Q  L  K  D  *  V  E  *  D  T  M  E  G  T  R  I  L  F  I  C  I  R  R  Y  N  S  H  V  C  W  *  N  A  R  L  V  A  G  S  S  L  R  K  E  K  K  K  R  F  P  F  S  F  V  V  L  V  L  *  Y  C  D  L  T  K  D  I  E  C  R  C  V  I  F  P  F  M  F  *  I  L  S  R  *  *  L  L  K  Q  *  V  F  Y  M  *  L  N  *  S  F  S  S  T  H  Y  D  *  F  *  I  K  M  R  F  S  T  T  R :   E  T  K  L </second_frame>
            <third_frame>   L  Q  L  Q  L  A  A  K  S  I  V  S  S  F  K  V  :  I  S  H  I  P  V  V  S  F  G  H  K  R  S  L  K  I  Y  S  A  K  M  E  L  S  I  T  Q  P  D  D  W  H  L  H  L  R  D  G  D  V  L  K  A  V  V  S  H  S :   A  H  H  F  G  R  A  I  V  M  P  N  L  K  P  P  I  T  T  T  A  A  A  V  A  Y  R  E  A  I  L  K  S  L  P  A  D  S  D  F  N  P  L  M  T  L  Y  L  T  D  T  T  S  P  M  E  I  K  L  A   : R  E  S  Q  V  V  F  G  V  K  L  Y  P  A  G  A  T  T  N  S  Q  D  G  V  T  D  L  F  G  K  C  L  P  V  L  Q  E  M  V  E  H  N  M  P  L  L  :  V  H  G  E  V  T  N  P  E  V  D  M  F  D  R  E  K  V  F  I  E  T  V  L  R  P  L  V  Q  K  F  P  R  L  K  V  V  M  E  H  V  T  T  M  D  A  V  K  F  V  E  S  C  S  E   : G  F  V  A  A  T  V  T  P  Q  H  L  V  L  N  R  N  S  L  F  Q  G  G  L  Q  P  H  N  Y  C  L  P  V  L  K  R  E  I  H   : R  E  A  L  V  S  A  V  T  S  G  S  K  R  F  F  L  G  T  D  S  A  P  H  D  R  R  R  K  E  C  S  C  G  C  A  G  I  Y  N  A  P  V  A  L  S  V  Y  A  K  V  F  E  K  :  E  N  A  L  D  K  L  E  A  F  T  S  F  N  G  P  D  F  Y  G  L  P  R  N  N  S  K  I  K  L  S  K  T  P  W  K  V  P  E  S  F  S  Y  A  S  G  D  I  I  P  M  F  A  G  E  M  L  D  W  L  P  A  P  L  *  E  R  K  K  K  R  D  S  H  S  H  L  L  F  L  Y  C  N  T  V  I  *  L  K  I  *  S  A  G  V  S  S  F  L  S  C  F  R  Y  Y  R  D  D  N  Y  *  N  S  K  F  S  I  C  D  *  T  K  A  L  V  R  P  I  M  I  D  F  K  *  R  *  G  L  V  Q  Q   : E  K  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51315" stop="51268"/>
                    <exon start="50667" stop="50522"/>
                    <exon start="50401" stop="50220"/>
                    <exon start="49579" stop="49443"/>
                    <exon start="49077" stop="48912"/>
                    <exon start="48795" stop="48679"/>
                    <exon start="44413" stop="44253"/>
                    <exon start="44111" stop="43917"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQLQLAAKSIVSSFKVISHIPVVSFGHKRSLKIYSAKMELSITQPDDWHLHLRDGDVLKAVVSHSAHHFGRAIVMPNLKPPITTTAAAVAYREAILKSLPADSDFNPLMTLYLTDTTSPMEIKLARESQVVFGVKLYPAGATTNSQDGVTDLFGKCLPVLQEMVEHNMPLLVHGEVTNPEVDMFDREKVFIETVLRPLVQKFPRLKVVMEHVTTMDAVKFVESCSEGFVAATVTPQHLVLNRNSLFQGGLQPHNYCLPVLKREIHREALVSAVTSGSKRFFLGTDSAPHDRRRKECSCGCAGIYNAPVALSVYAKVFEKENALDKLEAFTSFNGPDFYGLPRNNSKIKLSKTPWKVPESFSYASGDIIPMFAGEMLDWLPAPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50240" e_stop="50224"/>
            <exon e_start="49583" e_stop="49443"/>
            <exon e_start="49077" e_stop="48912"/>
            <exon e_start="48795" e_stop="48679"/>
            <exon e_start="44413" e_stop="44253"/>
            <exon e_start="44111" e_stop="43688"/>
            <exon e_start="42595" e_stop="42583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.436" e_score="1.000"/>
          <exon-intron don_prob="0.252" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.329" acc_prob="0.695" e_score="0.993"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50240" e_stop="50224" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.436">
            <gDNA_intron_boundary i_start="50223" i_stop="49584" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49583" e_stop="49443" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.252" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49442" i_stop="49078" i_length="365"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49077" e_stop="48912" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.860">
            <gDNA_intron_boundary i_start="48911" i_stop="48796" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48795" e_stop="48679" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.959">
            <gDNA_intron_boundary i_start="48678" i_stop="44414" i_length="4265"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44253" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="0.827" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44252" i_stop="44112" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="44111" e_stop="43688" e_length="424"/>
          </exon>
          <intron i_serial="6" don_prob="0.329" acc_prob="0.695">
            <gDNA_intron_boundary i_start="43687" i_stop="42596" i_length="1092"/>
          </intron>
          <exon e_serial="7" e_score="0.692">
            <gDNA_exon_boundary e_start="42595" e_stop="42583" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50240" stop="50224"/>
              <exon start="49583" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49579" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49533" stop="49443"/>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49077" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49076" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="44070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49051" stop="48912"/>
              <exon start="48795" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43688"/>
              <exon start="42595" stop="42583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48741" stop="48679"/>
              <exon start="44413" stop="44253"/>
              <exon start="44111" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGGAAATCAAACTA : ACAGGAGAGAGCCAGGTCGTATTTGGGGTGAAGTTGTACCCTGCTGGTGCCACGACAAATTCTCAAGATGGAGTGACTGATCTTTTTGGGAAGTGTTTACCAGTTCTACAAGAAATGGTTGAGCATAATATGCCTTTGCTG : GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG : GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA : GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG : GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAG : AGAAACAAAACTA</gDNA_template>
            <first_frame> L  W  K  S  N  * :   Q  E  R  A  R  S  Y  L  G  *  S  C  T  L  L  V  P  R  Q  I  L  K  M  E  *  L  I  F  L  G  S  V  Y  Q  F  Y  K  K  W  L  S  I  I  C  L  C  W :   F  M  E  R  L  L  I  L  R  L  T  C  L  I  E  K  R  Y  S  L  K  R  F  *  D  L  W  C  R  N  F  H  D  *  R  S  *  W  S  M  S  P  P  W  M  L  L  S  L  L  N  L  A  V  K  :  D  L  L  Q  R  L  S  P  H  N  I  L  F  *  T  G  I  L  S  S  K  G  A  Y  N  R  I  I  T  A  F  Q  S  S  K  E  R  S  T  :  G  R  H  L  C  Q  L  *  Q  V  E  V  K  D  F  F  L  G  L  I  V  L  L  M  I  D  E  E  K  N  V  L  V  D  V  L  V  F  T  M  L  L  *  P  Y  Q  Y  M  Q  R  C  L  K  R :   K  M  H  L  T  S  S  K  H  L  P  A  S  M  D  Q  T  F  M  G  F  R  G  T  T  Q  R  L  S  *  V  R  H  H  G  R  Y  P  N  P  F  H  M  H  Q  E  I  *  F  P  C  L  L  V  K  C  S  T  G  C  R  L  L  S  E  K  G  K  K  K  E  I  P  I  L  I  C  C  S  C  T  V  I  L  *  F  N  *  R  Y  R  V  Q  V  C  H  L  S  F  H  V  L  D  I  I  A  M  I  I  I  E  T  V  S  F  L  Y  V  T  E  L  K  L  *  F  D  P  L  *  L  I  L  N  K  D  E  V  *  Y  N  K  :  R  N  K  T  </first_frame>
            <second_frame>  Y  G  N  Q  T   : N  R  R  E  P  G  R  I  W  G  E  V  V  P  C  W  C  H  D  K  F  S  R  W  S  D  *  S  F  W  E  V  F  T  S  S  T  R  N  G  *  A  *  Y  A  F  A   : G  S  W  R  G  Y  *  S  *  G  *  H  V  *  *  R  K  G  I  H  *  N  G  S  K  T  F  G  A  E  I  S  T  I  E  G  R  D  G  A  C  H  H  H  G  C  C  *  V  C  *  I  L  Q  *  R :   I  C  C  S  D  C  H  P  T  T  S  C  F  K  Q  E  F  S  L  P  R  G  L  T  T  A  *  L  L  P  S  S  P  Q  K  R  D  P  Q :   G  G  T  C  V  S  C  N  K  W  K  *  K  I  F  S  W  D  *  *  C  S  S  *  *  T  K  K  R  M  F  L  W  M  C  W  Y  L  Q  C  S  C  S  L  I  S  I  C  K  G  V  *  K   : G  K  C  T  *  Q  A  R  S  I  Y  Q  L  Q  W  T  R  L  L  W  A  S  E  E  Q  L  K  D  *  V  E  *  D  T  M  E  G  T  R  I  L  F  I  C  I  R  R  Y  N  S  H  V  C  W  *  N  A  R  L  V  A  G  S  S  L  R  K  E  K  K  K  R  F  P  F  S  F  V  V  L  V  L  *  Y  C  D  L  T  K  D  I  E  C  R  C  V  I  F  P  F  M  F  *  I  L  S  R  *  *  L  L  K  Q  *  V  F  Y  M  *  L  N  *  S  F  S  S  T  H  Y  D  *  F  *  I  K  M  R  F  S  T  T  R :   E  T  K  L </second_frame>
            <third_frame>   M  E  I  K  L  :  T  G  E  S  Q  V  V  F  G  V  K  L  Y  P  A  G  A  T  T  N  S  Q  D  G  V  T  D  L  F  G  K  C  L  P  V  L  Q  E  M  V  E  H  N  M  P  L  L  :  V  H  G  E  V  T  N  P  E  V  D  M  F  D  R  E  K  V  F  I  E  T  V  L  R  P  L  V  Q  K  F  P  R  L  K  V  V  M  E  H  V  T  T  M  D  A  V  K  F  V  E  S  C  S  E   : G  F  V  A  A  T  V  T  P  Q  H  L  V  L  N  R  N  S  L  F  Q  G  G  L  Q  P  H  N  Y  C  L  P  V  L  K  R  E  I  H   : R  E  A  L  V  S  A  V  T  S  G  S  K  R  F  F  L  G  T  D  S  A  P  H  D  R  R  R  K  E  C  S  C  G  C  A  G  I  Y  N  A  P  V  A  L  S  V  Y  A  K  V  F  E  K  :  E  N  A  L  D  K  L  E  A  F  T  S  F  N  G  P  D  F  Y  G  L  P  R  N  N  S  K  I  K  L  S  K  T  P  W  K  V  P  E  S  F  S  Y  A  S  G  D  I  I  P  M  F  A  G  E  M  L  D  W  L  P  A  P  L  *  E  R  K  K  K  R  D  S  H  S  H  L  L  F  L  Y  C  N  T  V  I  *  L  K  I  *  S  A  G  V  S  S  F  L  S  C  F  R  Y  Y  R  D  D  N  Y  *  N  S  K  F  S  I  C  D  *  T  K  A  L  V  R  P  I  M  I  D  F  K  *  R  *  G  L  V  Q  Q   : E  K  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50238" stop="50224"/>
                    <exon start="49583" stop="49443"/>
                    <exon start="49077" stop="48912"/>
                    <exon start="48795" stop="48679"/>
                    <exon start="44413" stop="44253"/>
                    <exon start="44111" stop="43917"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEIKLTGESQVVFGVKLYPAGATTNSQDGVTDLFGKCLPVLQEMVEHNMPLLVHGEVTNPEVDMFDREKVFIETVLRPLVQKFPRLKVVMEHVTTMDAVKFVESCSEGFVAATVTPQHLVLNRNSLFQGGLQPHNYCLPVLKREIHREALVSAVTSGSKRFFLGTDSAPHDRRRKECSCGCAGIYNAPVALSVYAKVFEKENALDKLEAFTSFNGPDFYGLPRNNSKIKLSKTPWKVPESFSYASGDIIPMFAGEMLDWLPAPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45113" PGL_stop="47092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45113" e_stop="45368"/>
            <exon e_start="46707" e_stop="47092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.731" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45113" e_stop="45368" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.731">
            <gDNA_intron_boundary i_start="45369" i_stop="46706" i_length="1338"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="46707" e_stop="47092" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45113" stop="45368"/>
              <exon start="46707" stop="47092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAATTCATTTCTTCTTTGTTATGACAGTAATCCATACAACAAAATCAAAATGCCATATTCCGAAAAGATTATAGGCTTTTAGATTTGATTTAACGAAATATAAGCAAAGGCAGATTAGTTTTCACAAATAGTGTTTTGGACTCACTTCCCACTTACACAATCTCTTTATTCCTTATTCCTACATATCTGGCCAAGAAATTGATAAGATTCGTCGAATCTGAAATGAAAACAGGGACAAGAAAGCTTTTAATCA : TGCTAAGTGGGAAGCTGTCCAAAAAGATAAAAATCTGGAGGCCTGGGAGTACGGAATCTGAAAGCACACAATGATAGCCTCTTAAACAAATGGTCATGGAGATTCACAAAAGGTGAGAATGCAAAACGGAGTAAGTCATCGAGACCAAATATGGTATGCAACACCTGTGGATAACAAAGCTTACTAGCTCTTGTATGGTTTCTCTGTCGGGAAAAGCATCTGGACTTTCTTTAGACGAATTCCTAGGAAACAACATCTTTCAAGTTGGGAAATGGCAGAAAATCAGCTTTTTGGAATGGCCGTACCCCTCTCAAGTGTGTATCCACTCTGGCAGCCAATCAGAATGCGTAACAGATTATTACTCAAAAATGGCTTGAACATCATCT</gDNA_template>
            <first_frame> V  *  F  I  S  S  L  L  *  Q  *  S  I  Q  Q  N  Q  N  A  I  F  R  K  D  Y  R  L  L  D  L  I  *  R  N  I  S  K  G  R  L  V  F  T  N  S  V  L  D  S  L  P  T  Y  T  I  S  L  F  L  I  P  T  Y  L  A  K  K  L  I  R  F  V  E  S  E  M  K  T  G  T  R  K  L  L  I   : M  L  S  G  K  L  S  K  K  I  K  I  W  R  P  G  S  T  E  S  E  S  T  Q  *  *  P  L  K  Q  M  V  M  E  I  H  K  R  *  E  C  K  T  E  *  V  I  E  T  K  Y  G  M  Q  H  L  W  I  T  K  L  T  S  S  C  M  V  S  L  S  G  K  A  S  G  L  S  L  D  E  F  L  G  N  N  I  F  Q  V  G  K  W  Q  K  I  S  F  L  E  W  P  Y  P  S  Q  V  C  I  H  S  G  S  Q  S  E  C  V  T  D  Y  Y  S  K  M  A  *  T  S  S </first_frame>
            <second_frame>  F  N  S  F  L  L  C  Y  D  S  N  P  Y  N  K  I  K  M  P  Y  S  E  K  I  I  G  F  *  I  *  F  N  E  I  *  A  K  A  D  *  F  S  Q  I  V  F  W  T  H  F  P  L  T  Q  S  L  Y  S  L  F  L  H  I  W  P  R  N  *  *  D  S  S  N  L  K  *  K  Q  G  Q  E  S  F  *  S  :  C  *  V  G  S  C  P  K  R  *  K  S  G  G  L  G  V  R  N  L  K  A  H  N  D  S  L  L  N  K  W  S  W  R  F  T  K  G  E  N  A  K  R  S  K  S  S  R  P  N  M  V  C  N  T  C  G  *  Q  S  L  L  A  L  V  W  F  L  C  R  E  K  H  L  D  F  L  *  T  N  S  *  E  T  T  S  F  K  L  G  N  G  R  K  S  A  F  W  N  G  R  T  P  L  K  C  V  S  T  L  A  A  N  Q  N  A  *  Q  I  I  T  Q  K  W  L  E  H  H   </second_frame>
            <third_frame>   L  I  H  F  F  F  V  M  T  V  I  H  T  T  K  S  K  C  H  I  P  K  R  L  *  A  F  R  F  D  L  T  K  Y  K  Q  R  Q  I  S  F  H  K  *  C  F  G  L  T  S  H  L  H  N  L  F  I  P  Y  S  Y  I  S  G  Q  E  I  D  K  I  R  R  I  *  N  E  N  R  D  K  K  A  F  N  H :   A  K  W  E  A  V  Q  K  D  K  N  L  E  A  W  E  Y  G  I  *  K  H  T  M  I  A  S  *  T  N  G  H  G  D  S  Q  K  V  R  M  Q  N  G  V  S  H  R  D  Q  I  W  Y  A  T  P  V  D  N  K  A  Y  *  L  L  Y  G  F  S  V  G  K  S  I  W  T  F  F  R  R  I  P  R  K  Q  H  L  S  S  W  E  M  A  E  N  Q  L  F  G  M  A  V  P  L  S  S  V  Y  P  L  W  Q  P  I  R  M  R  N  R  L  L  L  K  N  G  L  N  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46841" stop="47083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIETKYGMQHLWITKLTSSCMVSLSGKASGLSLDEFLGNNIFQVGKWQKISFLEWPYPSQVCIHSGSQSECVTDYYSKMA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45209" stop="45368"/>
                    <exon start="46707" stop="46780"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNISKGRLVFTNSVLDSLPTYTISLFLIPTYLAKKLIRFVESEMKTGTRKLLIMLSGKLSKKIKIWRPGSTESESTQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46894" stop="47091"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYGFSVGKSIWTFFRRIPRKQHLSSWEMAENQLFGMAVPLSSVYPLWQPIRMRNRLLLKNGLNII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52977" PGL_stop="58878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52977" e_stop="53262"/>
            <exon e_start="57252" e_stop="57374"/>
            <exon e_start="58459" e_stop="58578"/>
            <exon e_start="58656" e_stop="58878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52977" e_stop="53262" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53263" i_stop="57251" i_length="3989"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57252" e_stop="57374" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="57375" i_stop="58458" i_length="1084"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58459" e_stop="58578" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.989">
            <gDNA_intron_boundary i_start="58579" i_stop="58655" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="58656" e_stop="58878" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52977" stop="53262"/>
              <exon start="57252" stop="57374"/>
              <exon start="58459" stop="58578"/>
              <exon start="58656" stop="58878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52981" stop="53262"/>
              <exon start="57252" stop="57374"/>
              <exon start="58459" stop="58506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53082" stop="53262"/>
              <exon start="57252" stop="57374"/>
              <exon start="58459" stop="58578"/>
              <exon start="58656" stop="58747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAGTTTCTAATTTTGCCCAAAATCGGTAGAAAAAAAAAAGTAGTAGTATATATATAGCTGTCATTGGGAGAGTTGTGAGCACGCAATAATACTCCCTCTAAAGAAGCACTAAATTTTCCCTTTTTGCATATTAAACGCTCTCCATCTAACATTTTGTTCAGTTGTCAATAATTGACTGGGAAATTGATTCCCGAGATCGGCAACTGGTGTTCTTCAATACTCAATTTTCGTGCAACTCTGTTAAAATGGGTTGCGTTGGATCCTCACGTACCAAAGGAGATG : AATCTGTCAGGAAAATAAGAAAACCAAAGCCATGGAGACACACAGAACCAATAACAAGAGCTCAGCTTCTAAAAATGCGTGAAGAATTCTGGGACACTGCACCACACTATGGGGGAAAAAAAG : AGATCTGGGATGCGCTACGTGCTGCTGCCGAGGCAGAAATAGGCCTTGCACAAACAATCGTGAACAGTGCTGGGATAATTGTTCAAACCACTGATCTAACAGTCTGCTATGATGAGAGAG : GTGCCAAGTATGACTTGCCTCTATACGTTTTGAGCGAACCAACAAATCTGACTGGTGAAAACTGAGAAGGCAATATAATCAAGTGTTCATGCTTCATTGAGACTGTAAATGCTGTAAATTGCTCTCACAAGTCATTTCTCTCAAACATTCATTTCGTTTTATGCATTATGGTCCTGTTTCACGACATCAAGAATCGTCTGTCGCAGCAGCAACATGCACCATG</gDNA_template>
            <first_frame> K  E  V  S  N  F  A  Q  N  R  *  K  K  K  S  S  S  I  Y  I  A  V  I  G  R  V  V  S  T  Q  *  Y  S  L  *  R  S  T  K  F  S  L  F  A  Y  *  T  L  S  I  *  H  F  V  Q  L  S  I  I  D  W  E  I  D  S  R  D  R  Q  L  V  F  F  N  T  Q  F  S  C  N  S  V  K  M  G  C  V  G  S  S  R  T  K  G  D   : E  S  V  R  K  I  R  K  P  K  P  W  R  H  T  E  P  I  T  R  A  Q  L  L  K  M  R  E  E  F  W  D  T  A  P  H  Y  G  G  K  K   : E  I  W  D  A  L  R  A  A  A  E  A  E  I  G  L  A  Q  T  I  V  N  S  A  G  I  I  V  Q  T  T  D  L  T  V  C  Y  D  E  R   : G  A  K  Y  D  L  P  L  Y  V  L  S  E  P  T  N  L  T  G  E  N  *  E  G  N  I  I  K  C  S  C  F  I  E  T  V  N  A  V  N  C  S  H  K  S  F  L  S  N  I  H  F  V  L  C  I  M  V  L  F  H  D  I  K  N  R  L  S  Q  Q  Q  H  A  P   </first_frame>
            <second_frame>  R  K  F  L  I  L  P  K  I  G  R  K  K  K  V  V  V  Y  I  *  L  S  L  G  E  L  *  A  R  N  N  T  P  S  K  E  A  L  N  F  P  F  L  H  I  K  R  S  P  S  N  I  L  F  S  C  Q  *  L  T  G  K  L  I  P  E  I  G  N  W  C  S  S  I  L  N  F  R  A  T  L  L  K  W  V  A  L  D  P  H  V  P  K  E  M  :  N  L  S  G  K  *  E  N  Q  S  H  G  D  T  Q  N  Q  *  Q  E  L  S  F  *  K  C  V  K  N  S  G  T  L  H  H  T  M  G  E  K  K  :  R  S  G  M  R  Y  V  L  L  P  R  Q  K  *  A  L  H  K  Q  S  *  T  V  L  G  *  L  F  K  P  L  I  *  Q  S  A  M  M  R  E  :  V  P  S  M  T  C  L  Y  T  F  *  A  N  Q  Q  I  *  L  V  K  T  E  K  A  I  *  S  S  V  H  A  S  L  R  L  *  M  L  *  I  A  L  T  S  H  F  S  Q  T  F  I  S  F  Y  A  L  W  S  C  F  T  T  S  R  I  V  C  R  S  S  N  M  H  H  </second_frame>
            <third_frame>   G  S  F  *  F  C  P  K  S  V  E  K  K  K  *  *  Y  I  Y  S  C  H  W  E  S  C  E  H  A  I  I  L  P  L  K  K  H  *  I  F  P  F  C  I  L  N  A  L  H  L  T  F  C  S  V  V  N  N  *  L  G  N  *  F  P  R  S  A  T  G  V  L  Q  Y  S  I  F  V  Q  L  C  *  N  G  L  R  W  I  L  T  Y  Q  R  R  * :   I  C  Q  E  N  K  K  T  K  A  M  E  T  H  R  T  N  N  K  S  S  A  S  K  N  A  *  R  I  L  G  H  C  T  T  L  W  G  K  K  R :   D  L  G  C  A  T  C  C  C  R  G  R  N  R  P  C  T  N  N  R  E  Q  C  W  D  N  C  S  N  H  *  S  N  S  L  L  *  *  E  R :   C  Q  V  *  L  A  S  I  R  F  E  R  T  N  K  S  D  W  *  K  L  R  R  Q  Y  N  Q  V  F  M  L  H  *  D  C  K  C  C  K  L  L  S  Q  V  I  S  L  K  H  S  F  R  F  M  H  Y  G  P  V  S  R  H  Q  E  S  S  V  A  A  A  T  C  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53130" stop="53262"/>
                    <exon start="57252" stop="57374"/>
                    <exon start="58459" stop="58578"/>
                    <exon start="58656" stop="58720"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFVQLSIIDWEIDSRDRQLVFFNTQFSCNSVKMGCVGSSRTKGDESVRKIRKPKPWRHTEPITRAQLLKMREEFWDTAPHYGGKKEIWDALRAAAEAEIGLAQTIVNSAGIIVQTTDLTVCYDERGAKYDLPLYVLSEPTNLTGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76261" PGL_stop="76618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76261" e_stop="76618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76261" e_stop="76618" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76261" stop="76618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTCCCCCGTGACAATAGAAATCAGATGTGAATCCGGGAAAGATGGCAGGGCTGGACCAATTGTGTTGTCAGCACCTCATGGTGTATCTCATATAGGTACAAATCCTGGCATTCATGGTAATGGGGTGAGAATGGCAGGTCCTGATGAAATCAGCAGGGCACAAGTGAATGATAGCGAAGGTTTAGCATTTAGAAAGCTCGACTCGAGAGGAATAGGTGGTAGCGAGATAGTTGAAGAGGAAGCTTCTCCAAGAGAATCAAAACACAATGATCAGATCGACAACAATACACAATTTGATAGGCGGAATTTAGAAAGGGATTTTCCGGGAGGGATAATGTCAATTGCCAAAAATTC</gDNA_template>
            <first_frame> L  G  P  P  *  Q  *  K  S  D  V  N  P  G  K  M  A  G  L  D  Q  L  C  C  Q  H  L  M  V  Y  L  I  *  V  Q  I  L  A  F  M  V  M  G  *  E  W  Q  V  L  M  K  S  A  G  H  K  *  M  I  A  K  V  *  H  L  E  S  S  T  R  E  E  *  V  V  A  R  *  L  K  R  K  L  L  Q  E  N  Q  N  T  M  I  R  S  T  T  I  H  N  L  I  G  G  I  *  K  G  I  F  R  E  G  *  C  Q  L  P  K  I  </first_frame>
            <second_frame>  W  V  P  R  D  N  R  N  Q  M  *  I  R  E  R  W  Q  G  W  T  N  C  V  V  S  T  S  W  C  I  S  Y  R  Y  K  S  W  H  S  W  *  W  G  E  N  G  R  S  *  *  N  Q  Q  G  T  S  E  *  *  R  R  F  S  I  *  K  A  R  L  E  R  N  R  W  *  R  D  S  *  R  G  S  F  S  K  R  I  K  T  Q  *  S  D  R  Q  Q  Y  T  I  *  *  A  E  F  R  K  G  F  S  G  R  D  N  V  N  C  Q  K  F </second_frame>
            <third_frame>   G  S  P  V  T  I  E  I  R  C  E  S  G  K  D  G  R  A  G  P  I  V  L  S  A  P  H  G  V  S  H  I  G  T  N  P  G  I  H  G  N  G  V  R  M  A  G  P  D  E  I  S  R  A  Q  V  N  D  S  E  G  L  A  F  R  K  L  D  S  R  G  I  G  G  S  E  I  V  E  E  E  A  S  P  R  E  S  K  H  N  D  Q  I  D  N  N  T  Q  F  D  R  R  N  L  E  R  D  F  P  G  G  I  M  S  I  A  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76263" stop="76616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSPVTIEIRCESGKDGRAGPIVLSAPHGVSHIGTNPGIHGNGVRMAGPDEISRAQVNDSEGLAFRKLDSRGIGGSEIVEEEASPRESKHNDQIDNNTQFDRRNLERDFPGGIMSIAKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="76732" PGL_stop="78733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76732" e_stop="76795"/>
            <exon e_start="77349" e_stop="77412"/>
            <exon e_start="78390" e_stop="78733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76732" e_stop="76795" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76796" i_stop="77348" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77349" e_stop="77412" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77413" i_stop="78389" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="78390" e_stop="78733" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76732" stop="76795"/>
              <exon start="77349" stop="77412"/>
              <exon start="78390" stop="78733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243188" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAAAGTAGCTGGTCAAAACGCAAGGCTGTTTCTATCGCTGATAAGCTTGAACAAGAGAATTT : GAGATTAGAAGCAAGGTCAAGGAGCTTGCTTTGTTGGAAGGCTAGAAGAGTCACCCGCCGACAG : CTTTCGCGATTGAAAACAAGAAGTAGGAGGCCAAAGAGCTTACTGAGGTTCGTTTCTTGCGGAAAATGTCTCTCTGGTAGGTCTCCAAGGTAGCAGTGAAATGTATCAGATTAATTTCCAGTTTTAGTTCTACTATTTGTTCAACGTCAGTCAATCTTTGTTTAGAAGGTCAATTTTATTTTTTCCAATAATAAATGGAAGGTGCAACATTATTAATATATCTTTTTCTAGTTTAGCAATTTTCTCTTTTAGATGTCTACAGTAGCTCTCATGTACTACAACACTATTCTACATTCTTATAAATTATTGGGAATTCATTTTTCCTCTTTTACTATGACATATGT</gDNA_template>
            <first_frame> G  K  V  A  G  Q  N  A  R  L  F  L  S  L  I  S  L  N  K  R  I   : *  D  *  K  Q  G  Q  G  A  C  F  V  G  R  L  E  E  S  P  A  D  S :   F  R  D  *  K  Q  E  V  G  G  Q  R  A  Y  *  G  S  F  L  A  E  N  V  S  L  V  G  L  Q  G  S  S  E  M  Y  Q  I  N  F  Q  F  *  F  Y  Y  L  F  N  V  S  Q  S  L  F  R  R  S  I  L  F  F  P  I  I  N  G  R  C  N  I  I  N  I  S  F  S  S  L  A  I  F  S  F  R  C  L  Q  *  L  S  C  T  T  T  L  F  Y  I  L  I  N  Y  W  E  F  I  F  P  L  L  L  *  H  M  </first_frame>
            <second_frame>  A  K  *  L  V  K  T  Q  G  C  F  Y  R  *  *  A  *  T  R  E  F  :  E  I  R  S  K  V  K  E  L  A  L  L  E  G  *  K  S  H  P  P  T   : A  F  A  I  E  N  K  K  *  E  A  K  E  L  T  E  V  R  F  L  R  K  M  S  L  W  *  V  S  K  V  A  V  K  C  I  R  L  I  S  S  F  S  S  T  I  C  S  T  S  V  N  L  C  L  E  G  Q  F  Y  F  F  Q  *  *  M  E  G  A  T  L  L  I  Y  L  F  L  V  *  Q  F  S  L  L  D  V  Y  S  S  S  H  V  L  Q  H  Y  S  T  F  L  *  I  I  G  N  S  F  F  L  F  Y  Y  D  I  C </second_frame>
            <third_frame>   Q  S  S  W  S  K  R  K  A  V  S  I  A  D  K  L  E  Q  E  N  L :   R  L  E  A  R  S  R  S  L  L  C  W  K  A  R  R  V  T  R  R  Q  :  L  S  R  L  K  T  R  S  R  R  P  K  S  L  L  R  F  V  S  C  G  K  C  L  S  G  R  S  P  R  *  Q  *  N  V  S  D  *  F  P  V  L  V  L  L  F  V  Q  R  Q  S  I  F  V  *  K  V  N  F  I  F  S  N  N  K  W  K  V  Q  H  Y  *  Y  I  F  F  *  F  S  N  F  L  F  *  M  S  T  V  A  L  M  Y  Y  N  T  I  L  H  S  Y  K  L  L  G  I  H  F  S  S  F  T  M  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76734" stop="76795"/>
                    <exon start="77349" stop="77412"/>
                    <exon start="78390" stop="78482"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSWSKRKAVSIADKLEQENLRLEARSRSLLCWKARRVTRRQLSRLKTRSRRPKSLLRFVSCGKCLSGRSPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="88478" PGL_stop="89180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88478" e_stop="89180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="88478" e_stop="89180" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88478" stop="89180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGAAGACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTTATTCAAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATCTCGACCCTTTTGGATGTTTTCCCCTTAAAGGATTTAAAAAATTTATCTGAAGATGTTAGGGAACAGGTTGAGTTGTTGAAGAAACAAGCAAGAAAATC</gDNA_template>
            <first_frame> F  Y  Q  K  G  R  I  L  E  L  F  L  Q  F  F  F  W  Y  T  H  I  D  I  S  L  K  Y  C  K  N  K  I  K  K  A  F  F  S  G  K  Q  E  K  G  W  S  *  F  F  K  I  L  V  K  L  G  V  G  N  *  W  H  L  L  Q  F  S  H  R  *  E  D  K  G  R  R  H  W  K  R  S  W  R  R  W  I  *  Q  M  L  G  C  C  K  L  *  R  R  Y  L  L  S  *  F  L  H  I  Q  V  K  G  C  R  F  I  S  G  R  I  V  S  L  C  *  G  K  F  K  Y  F  L  F  S  W  S  V  F  L  R  I  K  R  T  E  V  V  V  L  Q  I  C  R  L  Q  L  F  C  A  S  R  S  C  I  Y  C  F  T  G  R  K  S  C  L  I  I  A  L  I  Q  V  S  C  G  C  C  Y  K  T  I  R  F  Q  V  I  S  M  I  *  T  K  K  S  R  P  F  W  M  F  S  P  *  R  I  *  K  I  Y  L  K  M  L  G  N  R  L  S  C  *  R  N  K  Q  E  N  </first_frame>
            <second_frame>  F  I  R  K  V  E  S  W  S  C  F  Y  S  F  F  F  G  I  P  I  *  I  S  H  *  N  I  A  K  I  R  S  R  K  H  F  S  V  G  N  K  K  R  A  G  V  D  F  S  R  F  W  *  N  W  V  W  E  I  D  G  I  C  C  N  F  L  I  V  E  K  T  K  V  A  D  T  G  S  V  L  G  A  G  G  S  D  R  C  W  V  V  A  N  F  N  G  V  I  F  *  A  D  F  C  I  F  R  *  K  A  A  V  L  S  A  E  E  L  *  V  F  V  K  E  N  S  S  I  F  C  S  L  G  V  S  S  *  E  *  K  E  Q  K  *  W  F  F  R  F  A  V  Y  S  F  F  V  L  Q  G  V  V  F  I  A  L  P  V  E  N  L  A  *  L  L  L  L  F  K  *  V  V  A  V  A  T  K  P  F  D  F  R  S  F  P  *  F  E  P  R  N  L  D  P  F  G  C  F  P  L  K  G  F  K  K  F  I  *  R  C  *  G  T  G  *  V  V  E  E  T  S  K  K  I </second_frame>
            <third_frame>   L  S  E  R  *  N  L  G  V  V  F  T  V  F  F  L  V  Y  P  Y  R  Y  L  T  E  I  L  Q  K  *  D  Q  E  S  I  F  Q  W  E  T  R  K  G  L  E  L  I  F  Q  D  F  G  E  I  G  C  G  K  L  M  A  S  A  A  I  F  S  S  L  R  R  Q  R  S  P  T  L  E  A  F  L  A  P  V  D  L  T  D  V  G  L  L  Q  T  L  T  A  L  S  S  E  L  I  S  A  Y  S  G  K  R  L  P  F  Y  Q  R  K  N  C  K  S  L  L  R  K  I  Q  V  F  S  V  L  L  E  C  L  L  E  N  K  K  N  R  S  S  G  S  S  D  L  P  F  T  A  F  L  C  F  K  E  L  Y  L  L  L  Y  R  S  K  I  L  L  D  Y  C  S  Y  S  S  K  L  W  L  L  L  Q  N  H  S  I  S  G  H  F  H  D  L  N  Q  E  I  S  T  L  L  D  V  F  P  L  K  D  L  K  N  L  S  E  D  V  R  E  Q  V  E  L  L  K  K  Q  A  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88570" stop="89178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQESIFQWETRKGLELIFQDFGEIGCGKLMASAAIFSSLRRQRSPTLEAFLAPVDLTDVGLLQTLTALSSELISAYSGKRLPFYQRKNCKSLLRKIQVFSVLLECLLENKKNRSSGSSDLPFTAFLCFKELYLLLYRSKILLDYCSYSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPLKDLKNLSEDVREQVELLKKQARK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="89218" PGL_stop="90987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89218" e_stop="90987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="89218" e_stop="90987" e_length="1770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89218" stop="89592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89407" stop="90011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89804" stop="90317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89805" stop="90188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89913" stop="90639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89951" stop="90392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90006" stop="90681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90031" stop="90634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90031" stop="90561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90454" stop="90926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595449" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90573" stop="90987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90645" stop="90979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAAA</gDNA_template>
            <first_frame> L  K  L  F  S  F  L  N  E  F  E  N  G  G  V  P  D  Y  A  Q  L  Y  S  F  F  V  E  K  L  G  I  C  N  P  R  S  C  R  V  E  I  E  F  L  E  E  Q  I  V  N  H  E  G  D  I  E  P  T  S  S  V  L  N  G  F  V  A  L  M  R  Y  C  R  F  L  L  F  G  F  E  E  D  D  M  G  L  R  L  G  K  H  K  K  P  K  R  G  L  I  S  Q  E  I  A  E  T  F  I  S  V  P  K  D  F  C  C  P  I  S  L  D  L  M  R  D  P  V  I  V  A  T  G  Q  T  Y  D  R  A  S  I  S  R  W  M  E  E  G  H  C  T  C  P  K  T  G  Q  L  L  D  H  T  R  L  V  P  N  R  A  L  R  N  L  I  M  H  W  C  A  A  R  K  I  P  Y  D  P  L  E  S  G  D  P  C  V  E  C  F  P  S  A  S  P  S  R  A  A  L  E  A  N  K  A  T  A  A  L  L  I  K  Q  L  E  S  G  T  Q  I  A  K  T  I  A  A  Q  E  I  R  L  L  A  K  T  G  K  E  N  R  A  Y  I  A  E  A  G  A  I  P  H  L  K  N  L  L  S  S  P  D  A  V  A  Q  E  N  S  V  T  A  M  L  N  L  S  I  F  D  K  N  K  G  R  I  I  D  E  V  G  C  L  A  L  I  V  G  V  L  R  F  G  H  T  T  E  A  R  E  N  A  A  A  T  L  F  S  L  S  A  V  H  D  Y  K  R  Q  I  A  K  E  D  G  A  V  E  A  L  A  G  L  L  R  E  G  S  P  R  G  K  K  D  A  V  T  A  L  F  N  L  S  T  H  T  D  N  C  A  R  M  I  E  S  G  A  V  T  A  L  V  G  A  L  G  S  E  G  V  A  E  E  A  A  G  A  L  A  L  I  V  R  Q  Q  V  G  A  T  A  V  G  N  E  E  M  A  V  A  G  L  I  A  M  M  R  C  G  T  P  R  G  K  E  N  A  V  A  A  L  L  E  L  C  R  G  G  G  A  A  A  T  E  R  V  L  K  A  P  S  L  A  S  L  L  Q  T  L  L  F  T  G  T  K  R  A  R  R  K  A  A  S  L  A  R  V  F  Q  R  C  E  H  A  A  V  H  Y  S  G  F  G  V  G  Y  A  F  A  G  N  S  A  A  A  R  D  S  T  F  P  G  D  V  S  V  S  M  S  I  S  V  P  V  L  *  G  Y  L  P  P  F  I  F  C  S  *  F  Y  L  *  Y  S  K  I  L  S  L  K  Y  K  R  D  K  E  R  E  K  S  *  E  Y  H  K  I  H  V  F  L  A  F  C  R  I  Q  C  F  K </first_frame>
            <second_frame>  *  N  C  F  L  S  *  M  S  L  R  M  V  V  F  L  T  M  L  S  C  T  L  F  L  W  K  N  W  G  F  V  I  L  G  V  A  E  L  R  L  S  F  W  R  S  R  L  *  T  M  K  E  I  L  S  P  H  P  Q  F  S  T  G  L  W  R  *  C  D  T  A  G  F  C  Y  L  A  L  K  R  M  I  W  G  *  D  W  V  S  I  R  S  R  R  E  G  *  L  V  K  R  L  Q  R  H  S  F  L  Y  Q  R  T  S  V  V  R  Y  R  W  I  *  *  G  I  Q  L  L  W  Q  Q  G  R  H  M  I  E  L  L  Y  R  G  G  W  R  R  V  T  V  L  A  Q  R  Q  G  S  C  L  I  I  P  G  L  C  Q  T  G  L  L  G  I  *  L  C  I  G  V  L  L  A  K  F  P  M  T  L  W  R  V  G  I  H  V  L  N  V  F  H  Q  L  H  L  A  G  L  H  *  K  L  I  K  P  Q  Q  L  F  *  L  S  S  *  R  V  G  R  R  L  Q  K  L  L  L  L  R  R  *  D  F  *  L  K  L  V  R  R  I  V  H  T  *  L  R  L  V  Q  S  H  I  *  R  I  C  F  H  L  Q  M  L  W  H  K  K  I  P  S  L  Q  C  L  T  Y  R  F  L  I  R  I  K  A  E  L  L  M  K  *  G  V  W  L  *  *  L  E  F  *  D  L  G  T  P  Q  R  H  G  K  M  L  Q  Q  H  Y  S  V  C  Q  L  F  M  T  I  R  G  K  *  Q  K  K  M  G  Q  S  R  P  *  R  V  C  C  E  K  V  L  P  E  G  R  K  M  Q  *  L  L  Y  L  I  Y  P  P  T  Q  I  I  V  R  G  *  *  S  L  E  L  L  L  L  *  L  E  L  W  E  V  K  V  L  L  K  K  L  L  V  H  W  R  *  L  L  G  S  K  L  V  L  Q  L  L  A  M  R  K  W  Q  *  Q  G  S  L  Q  *  C  D  V  G  H  Q  E  G  R  R  M  L  L  L  H  Y  L  N  Y  A  A  V  V  E  Q  L  L  L  R  G  S  *  R  R  R  H  *  Q  V  Y  F  R  R  C  S  L  Q  E  Q  S  A  Q  G  G  K  Q  H  R  L  L  E  Y  S  N  G  V  S  M  Q  Q  F  I  I  V  G  L  V  *  D  M  H  L  L  E  T  Q  L  L  L  G  I  Q  L  F  L  V  M  S  Q  C  P  C  P  F  Q  F  Q  Y  Y  R  G  T  Y  H  H  S  S  F  V  L  S  F  T  C  N  I  Q  K  F  F  H  *  N  I  N  A  T  K  K  E  R  N  H  R  N  T  T  K  F  M  C  S  *  H  F  A  E  Y  S  V  S   </second_frame>
            <third_frame>   E  I  V  F  F  L  E  *  V  *  E  W  W  C  S  *  L  C  S  V  V  L  F  F  C  G  K  I  G  D  L  *  S  *  E  L  Q  S  *  D  *  V  F  G  G  A  D  C  E  P  *  R  R  Y  *  A  H  I  L  S  S  Q  R  V  C  G  V  D  A  I  L  Q  V  F  A  I  W  L  *  R  G  *  Y  G  V  E  I  G  *  A  *  E  A  E  E  R  A  D  *  S  R  D  C  R  D  I  H  F  C  T  K  G  L  L  L  S  D  I  V  G  F  D  E  G  S  S  Y  C  G  N  R  A  D  I  *  S  S  F  Y  I  E  V  D  G  G  G  S  L  Y  L  P  K  D  R  A  V  A  *  S  Y  P  A  C  A  K  Q  G  S  *  E  F  D  Y  A  L  V  C  C  S  Q  N  S  L  *  P  S  G  E  W  G  S  M  C  *  M  F  S  I  S  F  T  *  Q  G  C  T  R  S  *  *  S  H  S  S  S  S  D  *  A  A  R  E  W  D  A  D  C  K  N  Y  C  C  S  G  D  K  T  F  S  *  N  W  *  G  E  S  C  I  H  S  *  G  W  C  N  P  T  F  E  E  F  A  F  I  S  R  C  C  G  T  R  K  F  R  H  C  N  A  *  L  I  D  F  *  *  E  *  R  P  N  Y  *  *  S  R  V  S  G  F  D  S  W  S  F  E  I  W  A  H  H  R  G  T  G  K  C  C  S  N  I  I  Q  S  V  S  C  S  *  L  *  E  A  N  S  K  R  R  W  G  S  R  G  L  S  G  S  V  A  R  R  F  S  Q  R  E  E  R  C  S  N  C  S  I  *  F  I  H  P  H  R  *  L  C  E  D  D  R  V  W  S  C  Y  C  S  S  W  S  F  G  K  *  R  C  C  *  R  S  C  W  C  I  G  A  D  C  *  A  A  S  W  C  Y  S  C  W  Q  *  G  N  G  S  S  R  A  H  C  N  D  A  M  W  D  T  K  R  E  G  E  C  C  C  C  I  T  *  I  M  P  R  W  W  S  S  C  Y  *  E  G  L  E  G  A  V  I  S  K  F  T  S  D  V  A  L  Y  R  N  K  A  R  K  E  E  S  S  I  A  C  *  S  I  P  T  V  *  A  C  S  S  S  L  *  W  V  W  C  R  I  C  I  C  W  K  L  S  C  C  *  G  F  N  F  S  W  *  C  L  S  V  H  V  H  F  S  S  S  I  I  G  V  L  T  T  I  H  L  L  F  L  V  L  L  V  I  F  K  N  S  F  I  E  I  *  T  R  Q  R  K  R  E  I  I  G  I  P  Q  N  S  C  V  L  S  I  L  Q  N  T  V  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89218" stop="90831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLFSFLNEFENGGVPDYAQLYSFFVEKLGICNPRSCRVEIEFLEEQIVNHEGDIEPTSSVLNGFVALMRYCRFLLFGFEEDDMGLRLGKHKKPKRGLISQEIAETFISVPKDFCCPISLDLMRDPVIVATGQTYDRASISRWMEEGHCTCPKTGQLLDHTRLVPNRALRNLIMHWCAARKIPYDPLESGDPCVECFPSASPSRAALEANKATAALLIKQLESGTQIAKTIAAQEIRLLAKTGKENRAYIAEAGAIPHLKNLLSSPDAVAQENSVTAMLNLSIFDKNKGRIIDEVGCLALIVGVLRFGHTTEARENAAATLFSLSAVHDYKRQIAKEDGAVEALAGLLREGSPRGKKDAVTALFNLSTHTDNCARMIESGAVTALVGALGSEGVAEEAAGALALIVRQQVGATAVGNEEMAVAGLIAMMRCGTPRGKENAVAALLELCRGGGAAATERVLKAPSLASLLQTLLFTGTKRARRKAASLARVFQRCEHAAVHYSGFGVGYAFAGNSAAARDSTFPGDVSVSMSISVPVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90932" PGL_stop="90253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90932" e_stop="90253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="90932" e_stop="90253" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90932" stop="90253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGATTTCTCTCTTTCTTTGTCGCGTTTATATTTCAATGAAAGAATTTTTGAATATTACAAGTAAAACTAAGAACAAAAGATGAATGGTGGTAAGTACCCCTATAATACTGGAACTGAAATGGACATGGACACTGAGACATCACCAGGAAAAGTTGAATCCCTAGCAGCAGCTGAGTTTCCAGCAAATGCATATCCTACACCAAACCCACTATAATGAACTGCTGCATGCTCACACCGTTGGAATACTCTAGCAAGCGATGCTGCTTTCCTCCTTGCGCGCTTTGTTCCTGTAAAGAGCAACGTCTGAAGTAAACTTGCTAATGACGGCGCCTTCAAGACCCTCTCAGTAGCAGCTGCTCCACCACCGCGGCATAATTCAAGTAATGCAGCAACAGCATTCTCCTTCCCTCTTGGTGTCCCACATCGCATCATTGCAATGAGCCCTGCTACTGCCATTTCCTCATTGCCAACAGCTGTAGCACCAACTTGCTGCCTAACAATCAGCGCCAATGCACCAGCAGCTTCTTCAGCAACACCTTCACTTCCCAAAGCTCCAACTAGAGCAGTAACAGCTCCAGACTCTATCATCCTCGCACAATTATCTGTGTGGGTGGATAAATTAAATAGAGCAGTTACTGCATCTTTCTTCCCTCTGGGAGAACCTTCTCGCAACAGACC</gDNA_template>
            <first_frame> Y  D  F  S  L  S  L  S  R  L  Y  F  N  E  R  I  F  E  Y  Y  K  *  N  *  E  Q  K  M  N  G  G  K  Y  P  Y  N  T  G  T  E  M  D  M  D  T  E  T  S  P  G  K  V  E  S  L  A  A  A  E  F  P  A  N  A  Y  P  T  P  N  P  L  *  *  T  A  A  C  S  H  R  W  N  T  L  A  S  D  A  A  F  L  L  A  R  F  V  P  V  K  S  N  V  *  S  K  L  A  N  D  G  A  F  K  T  L  S  V  A  A  A  P  P  P  R  H  N  S  S  N  A  A  T  A  F  S  F  P  L  G  V  P  H  R  I  I  A  M  S  P  A  T  A  I  S  S  L  P  T  A  V  A  P  T  C  C  L  T  I  S  A  N  A  P  A  A  S  S  A  T  P  S  L  P  K  A  P  T  R  A  V  T  A  P  D  S  I  I  L  A  Q  L  S  V  W  V  D  K  L  N  R  A  V  T  A  S  F  F  P  L  G  E  P  S  R  N  R   </first_frame>
            <second_frame>  M  I  S  L  F  L  C  R  V  Y  I  S  M  K  E  F  L  N  I  T  S  K  T  K  N  K  R  *  M  V  V  S  T  P  I  I  L  E  L  K  W  T  W  T  L  R  H  H  Q  E  K  L  N  P  *  Q  Q  L  S  F  Q  Q  M  H  I  L  H  Q  T  H  Y  N  E  L  L  H  A  H  T  V  G  I  L  *  Q  A  M  L  L  S  S  L  R  A  L  F  L  *  R  A  T  S  E  V  N  L  L  M  T  A  P  S  R  P  S  Q  *  Q  L  L  H  H  R  G  I  I  Q  V  M  Q  Q  Q  H  S  P  S  L  L  V  S  H  I  A  S  L  Q  *  A  L  L  L  P  F  P  H  C  Q  Q  L  *  H  Q  L  A  A  *  Q  S  A  P  M  H  Q  Q  L  L  Q  Q  H  L  H  F  P  K  L  Q  L  E  Q  *  Q  L  Q  T  L  S  S  S  H  N  Y  L  C  G  W  I  N  *  I  E  Q  L  L  H  L  S  S  L  W  E  N  L  L  A  T  D  </second_frame>
            <third_frame>   *  F  L  S  F  F  V  A  F  I  F  Q  *  K  N  F  *  I  L  Q  V  K  L  R  T  K  D  E  W  W  *  V  P  L  *  Y  W  N  *  N  G  H  G  H  *  D  I  T  R  K  S  *  I  P  S  S  S  *  V  S  S  K  C  I  S  Y  T  K  P  T  I  M  N  C  C  M  L  T  P  L  E  Y  S  S  K  R  C  C  F  P  P  C  A  L  C  S  C  K  E  Q  R  L  K  *  T  C  *  *  R  R  L  Q  D  P  L  S  S  S  C  S  T  T  A  A  *  F  K  *  C  S  N  S  I  L  L  P  S  W  C  P  T  S  H  H  C  N  E  P  C  Y  C  H  F  L  I  A  N  S  C  S  T  N  L  L  P  N  N  Q  R  Q  C  T  S  S  F  F  S  N  T  F  T  S  Q  S  S  N  *  S  S  N  S  S  R  L  Y  H  P  R  T  I  I  C  V  G  G  *  I  K  *  S  S  Y  C  I  F  L  P  S  G  R  T  F  S  Q  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0011K05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90623" stop="90255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLANDGAFKTLSVAAAPPPRHNSSNAATAFSFPLGVPHRIIAMSPATAISSLPTAVAPTCCLTISANAPAASSATPSLPKAPTRAVTAPDSIILAQLSVWVDKLNRAVTASFFPLGEPSRNR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 187 chains have been computed
$ 
$ memory statistics:
$ 307472 bytes spliced alignments in total
$ 142 spliced alignments have been stored
$ 2165 bytes was the average size of a spliced alignment
$ 28088 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1755 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 202 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:37:36
-->
