<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:36:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="19239" stop="20045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19539" g_stop="19745" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19539" e_stop="19745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAATGTGAGGTATTCCATAGACTATACCAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCTTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAATTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726360" ref_strand="+" ref_description="SGN-E726360 [LA11CD06]">
      <seq>ggaaactcaaacgtctacttgatttccttttttggtccggctaacatctcgacagttctcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaatttcggaaggtgtttcgacaaccaggtccgctgaaggaagtcatggagacacttcagaaggaagtattagaaggtgatttgcttaaggactgccttgaattgggttctactgatttgaagggcctgctcacagttttgaaggatatttcttcaaaatatacctctactttctcaacgcgagcagatctgtgactgagtgaagttgaaaccaaggtattatggttaactctgtaacaagttttgttgctctacagtacagtactaacagaggtgtaaaagctcaatgtagaagaagctgaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25421" stop="28518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25721" g_stop="26299" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26300" i_stop="27937" i_length="1638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27938" g_stop="28218" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="860" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E726360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25721" e_stop="26299"/>
          <exon e_start="27938" e_stop="28218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACTCAAACGTCTACTTGATTTCCTTTTTTGGTCCGGCTAACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCAGTAAGTTTCTACTTTTATATTTTTAGGTTAATTAGTTGAACAGTATTGGCATATTTACATTCTACAGAGACATCCTTTCGACCACACTAATGGATAGAACTTAAATGTTTCTTGTGAATTGAGCACTATTAAGAAGAAGTTCTAGTTGGAAAGATTACAACTTTTTGTCTTGAATTCTTAAAGCGAAACTTATTTTCGGACAATTTGCTTTTGCTAAAGCGAAACTTATTTTGGACTGAGGGAGTAATGAGTATAGTAGAAGCAGCTCTGTATCTAGGTTCCAATGCCACCACTTTGATGTGCTAAATGTTAGGTGAAAGCTCTGCTGGTGTCTGATCAATCTTGGGTACAACTTATATGTGTAGCTACGCATTGTGCAAATTTGATGCCTCTGCTATAAGCCTGTAACTTCAGTTTAGAGATTGAATTCCATGCAATTGATTGAACTATAAATTTACAAACAAAATCCTTGAAAACAGTTAAAAATTAAAATGATAATGTTCTTTTACACACTGAGGAAATAATGGGAGGGTGACCATCATGGACACCAAACTAAGGAAGTTCTAACTTCATTGTATCGAAGTTATGTCTTATCGCACGGGCTTAGTGGTAGCATTTACAAAGTCTTTGATTACTTTATAAATAAAAGTTGCAAATTTGAAAGAGATATTATAGTTAATATTCTGAGACCAATCAAACAAACGACCAATGATTATTGTCAACAAAGCAAGAAGCATAGACTATAGACTCTCAGGATCAAGTGAGAACTTTGATAGGTATCTTGTCCTAGATATTGAATTGCTCATATAATTGATTGGCGTGAAGACTTACAAACCAAAACCAAAATAAAAATAAAAATGTAAAATGACAAAGTTATGCATATTTGGGAAACAAGAAATGGTAACCATAACCAAGGAAGTTCTCTAGGGTGTCGTAATCGGACAGGTAAAGTAATAAATTTGAAAGAGGAGAACATGGCTAACATGTTGGGACTTGGGAATGTGAAACTTAAATTTGACTGTTTTTGAAGATCAAAAGATCGTATTAGACAAGAAAGGAGTTTAGAGTTAAATTTTGCCCCTTCTTCATTCAGTTGTTCATCAAAAAGTTTTGAGGTTATTGATTGTTAGTTTACTGAAGATTGGTGCAATTTATCTCTCTATTTTGATCGAGATTTTTAATACACGGCCTGCCAATTCTTGGGCCTCCAAATTGGATGTTTCAAATTACTATAAGTAGGTCAAACCTGCAATAATAGTTGGTCAAATTTTCCATTCACCTCCAACTTGAATAATTAATACACTCTGGGAACATTCATCTTTAGCTATGTTGTATGCTTGAATTGATGCTCATATTGAGCACACAGTAAAATGGAACTAGTATGGGACATTATTAGTCTTGTCTTGAGCACACAGGAAACTCGACTAGTACGGGATACTGATGAAATTATCATATAAATGATTTTATGCTTATTTTTCCCCCTAAATCACCAAAACAGAGAATCATGAATATCTTAATTGGAGGTAAAAAAAAGGAAGTAGCATGGACCAGAACGCGAGGATGAAAACTGAATGTATGTCGACTCTGTTGTTGTGCACTTGGTCTATGTTTGTTTTTATTTTTTTTATTTTGAAGCAGGGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCAAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAGAAGCTGAATTTTT</genome_strand>
        <mrna_strand>GGAAACTCAAACGTCTACTTGATTTCCTTTTTTGGTCCGGCTAACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCAAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAGAAGCTGAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729319" ref_strand="+" ref_description="SGN-E729319 [LA20CG11]">
      <seq>ctcaaacgtctacttgatttccttttttggtccggctaacatctcgacagttctcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaatttcggaaggtgttcgacaaccaggtccgctgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25426" stop="26606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25726" g_stop="26299" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E729319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25726" e_stop="26299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACGTCTACTTGATTTCCTTTTTTGGTCCGGCTAACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA</genome_strand>
        <mrna_strand>CTCAAACGTCTACTTGATTTCCTTTTTTGGTCCGGCTAACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTG-TTCGACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348049" ref_strand="+" ref_description="SGN-E348049 [cTOF-31-I18]">
      <seq>acatctcgacagttctcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaatttcggaaggtgtttcgacaaccaggtccgctgaaggaagtcatggagacacttcagaaggaagtattagaaggtgatttgcttaaggactgccttgaattgggttctactgatttgaagggcctgctcacagttttgaaggatatttcttcaaaaatacctctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25464" stop="28382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25764" g_stop="26299" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26300" i_stop="27937" i_length="1638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27938" g_stop="28082" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="680" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E348049" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25764" e_stop="26299"/>
          <exon e_start="27938" e_stop="28082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCAGTAAGTTTCTACTTTTATATTTTTAGGTTAATTAGTTGAACAGTATTGGCATATTTACATTCTACAGAGACATCCTTTCGACCACACTAATGGATAGAACTTAAATGTTTCTTGTGAATTGAGCACTATTAAGAAGAAGTTCTAGTTGGAAAGATTACAACTTTTTGTCTTGAATTCTTAAAGCGAAACTTATTTTCGGACAATTTGCTTTTGCTAAAGCGAAACTTATTTTGGACTGAGGGAGTAATGAGTATAGTAGAAGCAGCTCTGTATCTAGGTTCCAATGCCACCACTTTGATGTGCTAAATGTTAGGTGAAAGCTCTGCTGGTGTCTGATCAATCTTGGGTACAACTTATATGTGTAGCTACGCATTGTGCAAATTTGATGCCTCTGCTATAAGCCTGTAACTTCAGTTTAGAGATTGAATTCCATGCAATTGATTGAACTATAAATTTACAAACAAAATCCTTGAAAACAGTTAAAAATTAAAATGATAATGTTCTTTTACACACTGAGGAAATAATGGGAGGGTGACCATCATGGACACCAAACTAAGGAAGTTCTAACTTCATTGTATCGAAGTTATGTCTTATCGCACGGGCTTAGTGGTAGCATTTACAAAGTCTTTGATTACTTTATAAATAAAAGTTGCAAATTTGAAAGAGATATTATAGTTAATATTCTGAGACCAATCAAACAAACGACCAATGATTATTGTCAACAAAGCAAGAAGCATAGACTATAGACTCTCAGGATCAAGTGAGAACTTTGATAGGTATCTTGTCCTAGATATTGAATTGCTCATATAATTGATTGGCGTGAAGACTTACAAACCAAAACCAAAATAAAAATAAAAATGTAAAATGACAAAGTTATGCATATTTGGGAAACAAGAAATGGTAACCATAACCAAGGAAGTTCTCTAGGGTGTCGTAATCGGACAGGTAAAGTAATAAATTTGAAAGAGGAGAACATGGCTAACATGTTGGGACTTGGGAATGTGAAACTTAAATTTGACTGTTTTTGAAGATCAAAAGATCGTATTAGACAAGAAAGGAGTTTAGAGTTAAATTTTGCCCCTTCTTCATTCAGTTGTTCATCAAAAAGTTTTGAGGTTATTGATTGTTAGTTTACTGAAGATTGGTGCAATTTATCTCTCTATTTTGATCGAGATTTTTAATACACGGCCTGCCAATTCTTGGGCCTCCAAATTGGATGTTTCAAATTACTATAAGTAGGTCAAACCTGCAATAATAGTTGGTCAAATTTTCCATTCACCTCCAACTTGAATAATTAATACACTCTGGGAACATTCATCTTTAGCTATGTTGTATGCTTGAATTGATGCTCATATTGAGCACACAGTAAAATGGAACTAGTATGGGACATTATTAGTCTTGTCTTGAGCACACAGGAAACTCGACTAGTACGGGATACTGATGAAATTATCATATAAATGATTTTATGCTTATTTTTCCCCCTAAATCACCAAAACAGAGAATCATGAATATCTTAATTGGAGGTAAAAAAAAGGAAGTAGCATGGACCAGAACGCGAGGATGAAAACTGAATGTATGTCGACTCTGTTGTTGTGCACTTGGTCTATGTTTGTTTTTATTTTTTTTATTTTGAAGCAGGGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTT</genome_strand>
        <mrna_strand>ACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAA-ATACCTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464063" ref_strand="+" ref_description="SGN-E464063 [cPRO-16-H24]">
      <seq>gttctcaaccgtccggctagtcggccaccgtcgctaccggcaatgcggaggaccggcgtgactccctcagtctttcttctcttcctcttcttccttcttctctctaagccaccaccttgttcctccttttctttcccattttccaactaccacgccgtcctctctctctcgcattcgctgttctcccgcgttgctaatctccgggaaactcgcggagactacgatggcgcttcccgagctcgatctattgctagaaaactggagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggactatgctcgaaattatgcttggagagatgctacgtcgtttgaaatgttcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaagtggatgaatcggaattatgaaaatcttttcagagtttcaaaatctctttttggtaaatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25475" stop="26580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25775" g_stop="26280" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E464063" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25775" e_stop="26280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCG</genome_strand>
        <mrna_strand>GTTCTCAACCGTCCGGCTAGTCGGCCACCGTCGCTACCGGCAATGCGGAGGACCGGCGTGACTCCCTCAGTCTTTCTTCTCTTCCTCTTCTTCCTTCTTCTCTCTAAGCCACCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCACGCCGTCCTCTCTCTCTCGCATTCGCTGTTCTCCCGCGTTGCTAATCTCCGGGAAACTCGCGGAGACTACGATGGCGCTTCCCGAGCTCGATCTATTGCTAGAAAACTGGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGACTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCGTTTGAAATGTTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAAGTGGATGAATCGGAATTATGAAAATCTTTTCAGAGTTTCAAAATCTCTTTTTGGTAAATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375954" ref_strand="+" ref_description="SGN-E375954 [TUS-40-E16]">
      <seq>tcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaatttcggaaggtgtttcgacaaccaggtccgctgaaggaagtcatggagacacttcagaaggaagtattagaaggtgatttgcttaaggactgccttgaattgggttctactgatttgaagggcctgctcacagttttgaaggatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25479" stop="28360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25779" g_stop="26299" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26300" i_stop="27937" i_length="1638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27938" g_stop="28060" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="644" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E375954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25779" e_stop="26299"/>
          <exon e_start="27938" e_stop="28060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCAGTAAGTTTCTACTTTTATATTTTTAGGTTAATTAGTTGAACAGTATTGGCATATTTACATTCTACAGAGACATCCTTTCGACCACACTAATGGATAGAACTTAAATGTTTCTTGTGAATTGAGCACTATTAAGAAGAAGTTCTAGTTGGAAAGATTACAACTTTTTGTCTTGAATTCTTAAAGCGAAACTTATTTTCGGACAATTTGCTTTTGCTAAAGCGAAACTTATTTTGGACTGAGGGAGTAATGAGTATAGTAGAAGCAGCTCTGTATCTAGGTTCCAATGCCACCACTTTGATGTGCTAAATGTTAGGTGAAAGCTCTGCTGGTGTCTGATCAATCTTGGGTACAACTTATATGTGTAGCTACGCATTGTGCAAATTTGATGCCTCTGCTATAAGCCTGTAACTTCAGTTTAGAGATTGAATTCCATGCAATTGATTGAACTATAAATTTACAAACAAAATCCTTGAAAACAGTTAAAAATTAAAATGATAATGTTCTTTTACACACTGAGGAAATAATGGGAGGGTGACCATCATGGACACCAAACTAAGGAAGTTCTAACTTCATTGTATCGAAGTTATGTCTTATCGCACGGGCTTAGTGGTAGCATTTACAAAGTCTTTGATTACTTTATAAATAAAAGTTGCAAATTTGAAAGAGATATTATAGTTAATATTCTGAGACCAATCAAACAAACGACCAATGATTATTGTCAACAAAGCAAGAAGCATAGACTATAGACTCTCAGGATCAAGTGAGAACTTTGATAGGTATCTTGTCCTAGATATTGAATTGCTCATATAATTGATTGGCGTGAAGACTTACAAACCAAAACCAAAATAAAAATAAAAATGTAAAATGACAAAGTTATGCATATTTGGGAAACAAGAAATGGTAACCATAACCAAGGAAGTTCTCTAGGGTGTCGTAATCGGACAGGTAAAGTAATAAATTTGAAAGAGGAGAACATGGCTAACATGTTGGGACTTGGGAATGTGAAACTTAAATTTGACTGTTTTTGAAGATCAAAAGATCGTATTAGACAAGAAAGGAGTTTAGAGTTAAATTTTGCCCCTTCTTCATTCAGTTGTTCATCAAAAAGTTTTGAGGTTATTGATTGTTAGTTTACTGAAGATTGGTGCAATTTATCTCTCTATTTTGATCGAGATTTTTAATACACGGCCTGCCAATTCTTGGGCCTCCAAATTGGATGTTTCAAATTACTATAAGTAGGTCAAACCTGCAATAATAGTTGGTCAAATTTTCCATTCACCTCCAACTTGAATAATTAATACACTCTGGGAACATTCATCTTTAGCTATGTTGTATGCTTGAATTGATGCTCATATTGAGCACACAGTAAAATGGAACTAGTATGGGACATTATTAGTCTTGTCTTGAGCACACAGGAAACTCGACTAGTACGGGATACTGATGAAATTATCATATAAATGATTTTATGCTTATTTTTCCCCCTAAATCACCAAAACAGAGAATCATGAATATCTTAATTGGAGGTAAAAAAAAGGAAGTAGCATGGACCAGAACGCGAGGATGAAAACTGAATGTATGTCGACTCTGTTGTTGTGCACTTGGTCTATGTTTGTTTTTATTTTTTTTATTTTGAAGCAGGGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATT</genome_strand>
        <mrna_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319536" ref_strand="+" ref_description="SGN-E319536 [cTOB-15-I14]">
      <seq>tcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25479" stop="26578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25779" g_stop="26278" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E319536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25779" e_stop="26278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTT</genome_strand>
        <mrna_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319443" ref_strand="+" ref_description="SGN-E319443 [cTOB-15-F14]">
      <seq>tcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25479" stop="26565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25779" g_stop="26265" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E319443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25779" e_stop="26265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCT</genome_strand>
        <mrna_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319345" ref_strand="+" ref_description="SGN-E319345 [cTOB-15-I13]">
      <seq>tcaaccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25479" stop="26499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25779" g_stop="26199" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E319345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25779" e_stop="26199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTC</genome_strand>
        <mrna_strand>TCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709033" ref_strand="+" ref_description="SGN-E709033 [FA42CA04]">
      <seq>cgccggccggctagtcggcgaccgtcgttaccggcgatgcggagaaccgacgtgactccctcaatctttcttctcttactcttcttccttcttctctctaagccatcaccttgttcctccttttctttcccattttccaactaccaagccgtcttctctctttctcactcgctattctcccgcgtcgctaatctccggcaagctcgcggagactatgatggcgctgcccgagctcgatccattgctaaaaaactagagaatggtatgggtattggtttctggaaagtcatgtggaacgtgggttgggattatgctcgaaattatgcttggagagatgctacgtcatttgaaatattcggtgctttctctgatctgaatgaaattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaatttcggaaggtgtttcgacaaccaggtccgctgaaggaagtcatggagacacttcagaaggaagtattagaaggtgatttgcttaaggactgccttgaattgggttctactgatttgaagggcctgctcacagttttgaaggatatttcttcaaaatatacctctactttctcaacgcgagcagatctgtgactgagtgaagttgaaacccaggtattatggttaactctgtaacaagttttgttgctctacagtacagtactaacagaggtgtaaaagctcaatgtagaaaaagctgaattttttgtttcaggcttgtgtactttagtgacttgttgatccaacgtctaaaaatggacaagcctattaataagtttgactttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25483" stop="28601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25781" g_stop="26299" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26300" i_stop="27937" i_length="1638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27938" g_stop="28301" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="881" r_length="362" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E709033" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25781" e_stop="26299"/>
          <exon e_start="27938" e_stop="28301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCAGTAAGTTTCTACTTTTATATTTTTAGGTTAATTAGTTGAACAGTATTGGCATATTTACATTCTACAGAGACATCCTTTCGACCACACTAATGGATAGAACTTAAATGTTTCTTGTGAATTGAGCACTATTAAGAAGAAGTTCTAGTTGGAAAGATTACAACTTTTTGTCTTGAATTCTTAAAGCGAAACTTATTTTCGGACAATTTGCTTTTGCTAAAGCGAAACTTATTTTGGACTGAGGGAGTAATGAGTATAGTAGAAGCAGCTCTGTATCTAGGTTCCAATGCCACCACTTTGATGTGCTAAATGTTAGGTGAAAGCTCTGCTGGTGTCTGATCAATCTTGGGTACAACTTATATGTGTAGCTACGCATTGTGCAAATTTGATGCCTCTGCTATAAGCCTGTAACTTCAGTTTAGAGATTGAATTCCATGCAATTGATTGAACTATAAATTTACAAACAAAATCCTTGAAAACAGTTAAAAATTAAAATGATAATGTTCTTTTACACACTGAGGAAATAATGGGAGGGTGACCATCATGGACACCAAACTAAGGAAGTTCTAACTTCATTGTATCGAAGTTATGTCTTATCGCACGGGCTTAGTGGTAGCATTTACAAAGTCTTTGATTACTTTATAAATAAAAGTTGCAAATTTGAAAGAGATATTATAGTTAATATTCTGAGACCAATCAAACAAACGACCAATGATTATTGTCAACAAAGCAAGAAGCATAGACTATAGACTCTCAGGATCAAGTGAGAACTTTGATAGGTATCTTGTCCTAGATATTGAATTGCTCATATAATTGATTGGCGTGAAGACTTACAAACCAAAACCAAAATAAAAATAAAAATGTAAAATGACAAAGTTATGCATATTTGGGAAACAAGAAATGGTAACCATAACCAAGGAAGTTCTCTAGGGTGTCGTAATCGGACAGGTAAAGTAATAAATTTGAAAGAGGAGAACATGGCTAACATGTTGGGACTTGGGAATGTGAAACTTAAATTTGACTGTTTTTGAAGATCAAAAGATCGTATTAGACAAGAAAGGAGTTTAGAGTTAAATTTTGCCCCTTCTTCATTCAGTTGTTCATCAAAAAGTTTTGAGGTTATTGATTGTTAGTTTACTGAAGATTGGTGCAATTTATCTCTCTATTTTGATCGAGATTTTTAATACACGGCCTGCCAATTCTTGGGCCTCCAAATTGGATGTTTCAAATTACTATAAGTAGGTCAAACCTGCAATAATAGTTGGTCAAATTTTCCATTCACCTCCAACTTGAATAATTAATACACTCTGGGAACATTCATCTTTAGCTATGTTGTATGCTTGAATTGATGCTCATATTGAGCACACAGTAAAATGGAACTAGTATGGGACATTATTAGTCTTGTCTTGAGCACACAGGAAACTCGACTAGTACGGGATACTGATGAAATTATCATATAAATGATTTTATGCTTATTTTTCCCCCTAAATCACCAAAACAGAGAATCATGAATATCTTAATTGGAGGTAAAAAAAAGGAAGTAGCATGGACCAGAACGCGAGGATGAAAACTGAATGTATGTCGACTCTGTTGTTGTGCACTTGGTCTATGTTTGTTTTTATTTTTTTTATTTTGAAGCAGGGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCAAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAGAAGCTGAATTTTTTGTTTCCAGGCTTGTGTACTTTAAGTGACTTGTTGATCAACGGTCTAAAAATGGACAAGCCTATTAATTAGTTTGACTTTGGA</genome_strand>
        <mrna_strand>CGCCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCCAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAAAAGCTGAATTTTTTGTTT-CAGGCTTGTGTACTTT-AGTGACTTGTTGATCCAACGTCTAAAAATGGACAAGCCTATTAATAAGTTTGACTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375953" ref_strand="+" ref_description="SGN-E375953 [TUS-40-E16](-)">
      <seq>aattctgcgtggtcttagcgacttttcaagtgtcagttcagatagggaaagggttaactggatgaatcgaaattatgaaaatcttttcagagtttcgaaatctctcttcggtaaatttcggaaggtgtttcgacaaccaggtccgctgaaggaagtcatggagacacttcagaaggaagtattagaaggtgatttgcttaaggactgccttgaattgggttctactgatttgaagggcctgctcacagttttgaaggatatttcttcaaaatatacctctactttctcaacgcgagcagatctgtgactgagtgaagttgaaaccaaggtattatggttaactctgtaacaagttttgttgctctacagtacagtactaacagaggtgtaaaagctcaatgtagaagaagctgaattttttgtttccaggcttgtgtactttaagtgacttgttgatcaacggtctaaaaatggacaagcctattaattagtttgactttggaaggttataaacatgtatacctagcatgtgctttatcataatgagagttttttttttttaatgttggatcttgggtgtactcttattttgacatttttcatggttgaaaaattatttattataaagacaatgcatttattaagttattaacgccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="25861" stop="28760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26161" g_stop="26299" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26300" i_stop="27937" i_length="1638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27938" g_stop="28463" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="665" r_length="526" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E375953" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26161" e_stop="26299"/>
          <exon e_start="27938" e_stop="28463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCAGTAAGTTTCTACTTTTATATTTTTAGGTTAATTAGTTGAACAGTATTGGCATATTTACATTCTACAGAGACATCCTTTCGACCACACTAATGGATAGAACTTAAATGTTTCTTGTGAATTGAGCACTATTAAGAAGAAGTTCTAGTTGGAAAGATTACAACTTTTTGTCTTGAATTCTTAAAGCGAAACTTATTTTCGGACAATTTGCTTTTGCTAAAGCGAAACTTATTTTGGACTGAGGGAGTAATGAGTATAGTAGAAGCAGCTCTGTATCTAGGTTCCAATGCCACCACTTTGATGTGCTAAATGTTAGGTGAAAGCTCTGCTGGTGTCTGATCAATCTTGGGTACAACTTATATGTGTAGCTACGCATTGTGCAAATTTGATGCCTCTGCTATAAGCCTGTAACTTCAGTTTAGAGATTGAATTCCATGCAATTGATTGAACTATAAATTTACAAACAAAATCCTTGAAAACAGTTAAAAATTAAAATGATAATGTTCTTTTACACACTGAGGAAATAATGGGAGGGTGACCATCATGGACACCAAACTAAGGAAGTTCTAACTTCATTGTATCGAAGTTATGTCTTATCGCACGGGCTTAGTGGTAGCATTTACAAAGTCTTTGATTACTTTATAAATAAAAGTTGCAAATTTGAAAGAGATATTATAGTTAATATTCTGAGACCAATCAAACAAACGACCAATGATTATTGTCAACAAAGCAAGAAGCATAGACTATAGACTCTCAGGATCAAGTGAGAACTTTGATAGGTATCTTGTCCTAGATATTGAATTGCTCATATAATTGATTGGCGTGAAGACTTACAAACCAAAACCAAAATAAAAATAAAAATGTAAAATGACAAAGTTATGCATATTTGGGAAACAAGAAATGGTAACCATAACCAAGGAAGTTCTCTAGGGTGTCGTAATCGGACAGGTAAAGTAATAAATTTGAAAGAGGAGAACATGGCTAACATGTTGGGACTTGGGAATGTGAAACTTAAATTTGACTGTTTTTGAAGATCAAAAGATCGTATTAGACAAGAAAGGAGTTTAGAGTTAAATTTTGCCCCTTCTTCATTCAGTTGTTCATCAAAAAGTTTTGAGGTTATTGATTGTTAGTTTACTGAAGATTGGTGCAATTTATCTCTCTATTTTGATCGAGATTTTTAATACACGGCCTGCCAATTCTTGGGCCTCCAAATTGGATGTTTCAAATTACTATAAGTAGGTCAAACCTGCAATAATAGTTGGTCAAATTTTCCATTCACCTCCAACTTGAATAATTAATACACTCTGGGAACATTCATCTTTAGCTATGTTGTATGCTTGAATTGATGCTCATATTGAGCACACAGTAAAATGGAACTAGTATGGGACATTATTAGTCTTGTCTTGAGCACACAGGAAACTCGACTAGTACGGGATACTGATGAAATTATCATATAAATGATTTTATGCTTATTTTTCCCCCTAAATCACCAAAACAGAGAATCATGAATATCTTAATTGGAGGTAAAAAAAAGGAAGTAGCATGGACCAGAACGCGAGGATGAAAACTGAATGTATGTCGACTCTGTTGTTGTGCACTTGGTCTATGTTTGTTTTTATTTTTTTTATTTTGAAGCAGGGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCAAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAGAAGCTGAATTTTTTGTTTCCAGGCTTGTGTACTTTAAGTGACTTGTTGATCAACGGTCTAAAAATGGACAAGCCTATTAATTAGTTTGACTTTGGAAGGTTATAAACATGTATACCTAGCATGTGCTTTATCATAATGAGAGTTTTTTTTTTTTAATGTTGGATCTTGGGTGTACTCTTATTTTGACATTTTTCATGGTTGAAAAATTATTTATTATAAAGACAATGCATTTATTAAGTTATTAACGCCATGAAAGGA</genome_strand>
        <mrna_strand>AATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCAAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAGAAGCTGAATTTTTTGTTTCCAGGCTTGTGTACTTTAAGTGACTTGTTGATCAACGGTCTAAAAATGGACAAGCCTATTAATTAGTTTGACTTTGGAAGGTTATAAACATGTATACCTAGCATGTGCTTTATCATAATGAGAGTTTTTTTTTTTTAATGTTGGATCTTGGGTGTACTCTTATTTTGACATTTTTCATGGTTGAAAAATTATTTATTATAAAGACAATGCATTTATTAAGTTATTAACGCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313458" ref_strand="+" ref_description="SGN-E313458 [cTOA-13-F3]">
      <seq>taacttctcatcaatgaattgaagtcttcgtcacactctctaaaatgactagctcattaacctcaaaacacataatatagtatactatataattagacaattgtttgaaacttttcttcaagctactcaattttccactagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30242" stop="31163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30542" g_stop="30863" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E313458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30542" e_stop="30863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTCTCATCAATGAATTGAAGTCTTCGTCACACTCTCTAAAATGACTAGCTCATTAACCTCAAAACACATAATATAGTATACTATATAATTAGACAATTGTTTGAAACTTTTCTTCAAGCTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGA</genome_strand>
        <mrna_strand>TAACTTCTCATCAATGAATTGAAGTCTTCGTCACACTCTCTAAAATGACTAGCTCATTAACCTCAAAACACATAATATAGTATACTATATAATTAGACAATTGTTTGAAACTTTTCTTCAAGCTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745205" ref_strand="+" ref_description="SGN-E745205 [GI|47105841]">
      <seq>gaagctactcaattttccactagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgttctaattcaacaatactctcaacaactaaagactttgtatgactatggagcaaggaagtttgtcttaattggagtgggccaaattggttgtagcccaaatgctctagcccaaaacagtcctgatggaagaacctgtgcagaaaatataaataatgcaaacaagttgttcaacaataggctaaagggtattgtggatgaattcaatggcaatacaccagatgcaaaattcatctacatcaatgcttatgatatcttccaagatttaattgacaatccctcagcatttggatttagagtaacgaatgctggatgttgtggagtaggaaggaataacgggcaaataacatgtcttccactacaaaatccttgccaaaatagagatgaatatgtattttgggatgcatttcatccaggtgaagctgcaaatatagttgttgggagaagatcatatagagctgaaagatcatcagatgcttatccttttgatattcagcgtttagctcaactatgaagataagagatgaagctaaaaatatatatatttttgtggaatttgtattattgtgttctatgatgtattatgagttgataataattaattttattatttgagaaatgttatggttataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30361" stop="33285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30660" g_stop="30985" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="451" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32168" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="697" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32288" g_stop="32543" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="953" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32638" g_stop="32977" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1293" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1295" polyA_stop="1314"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E745205" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1293</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30660" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32168"/>
          <exon e_start="32288" e_stop="32543"/>
          <exon e_start="32638" e_stop="32977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTGGTAAATATTTCTTTCTCATGCGAGTCATTTTTTTTTAATAAACAGACTTAAAAAAAAATAGTATTGACAAACTTGACTTTTTGACAATGTTCAGGATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTA</genome_strand>
        <mrna_strand>GAAGCTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG.......................................................................................................................ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG..............................................................................................GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723532" ref_strand="+" ref_description="SGN-E723532 [FC20DB11]">
      <seq>ggcgaattggcggccaatcggccgaattgaagctactcaattttccactagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgttctaattcaacaatactctcaacaactaaagactttgtatgactatggagcaaggaagtttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30358" stop="32621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30664" g_stop="30985" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="354" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="479" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32168" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="725" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32288" g_stop="32321" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="759" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E723532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30664" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32168"/>
          <exon e_start="32288" e_stop="32321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCT</genome_strand>
        <mrna_strand>CTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG.......................................................................................................................ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347345" ref_strand="+" ref_description="SGN-E347345 [cTOF-33-J3]">
      <seq>tcaattttccactagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30368" stop="32369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30668" g_stop="30985" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="443" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32069" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="590" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E347345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30668" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTC</genome_strand>
        <mrna_strand>TCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467535" ref_strand="+" ref_description="SGN-E467535 [cSTB-49-C16]">
      <seq>cactagtatagtacacactttttttcttcccccttagcttctttttgtttgatgataatgggtgcttggggagtaaagagatggatagtggtgtatgtagcggtacttttaggattgaatttggggataaatgtaaatgcacaacaagtgcctcgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtctttggctagggctaattacttgccttatggcattgattatcctgatggtgcaactgggaggctttccaatggcaaaactactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgataattatgcatctgctgcagctggaatcagagaagaaactggccaacaattgggagcaaggattacctttggtggtcaggtgaataattacaggagcacagcgcaacaagtggtgcaaatacttggagatgaaaattcagctgctaattatctgagcaagtgtatatactcaattggactgggcagcagcgattatctcaataattatttgatgccccaatattactccactagcagacaatgcaatcctgatcaatatgctgatgttctaattcaacaatacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30377" stop="32457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30677" g_stop="30985" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="432" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32157" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="667" r_length="235" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E467535" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30677" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGA-AATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTC</genome_strand>
        <mrna_strand>CACTAGTATAGTACACACTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGATAATGGGTGCTTGGGGAGT-AA-A-GAGATGGATAGTGGTGTATGTAGCGGTACTTTTAGGATTGAATTTGGGGATAAATGTAAATGCACAACAAGTGCCTCGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCTTTGGCTAGGGCTAATTACTTGCCTTATGGCATTGATTATCCTGATGGTGCAACTGGGAGGCTTTCCAATGGCAAAACTACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGATAATTATGCATCTGCTGCAGCTGGAATCAGAGAAGAAACTGGCCAACAATTG..............................................................................................................................GGAGCAAGGATTACCTTTGGTGGTCAGGTGAATAATTACAGGAGCACAGCGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCAGCTGCTAATTATCTGAGCAAGTGTATATACTCAATTGGACTGGGCAGCAGCGATTATCTCAATAATTATTTGATGCCCCAATATTACTCCACTAGCAGACAATGCAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347573" ref_strand="+" ref_description="SGN-E347573 [cTOF-26-I6]">
      <seq>actagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattangcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30378" stop="32437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30678" g_stop="30985" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="433" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32137" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="648" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E347573" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30678" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGT</genome_strand>
        <mrna_strand>ACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTANGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343693" ref_strand="+" ref_description="SGN-E343693 [cTOF-20-M16]">
      <seq>gagagagagaactagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgnctgatgttctaattcaacaatactctcaacaactaaagactttgtatgactatggagcaaggaagtttgtcttaattggagtgggccaaattggttgtagcccaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30378" stop="32658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30680" g_stop="30985" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="318" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="443" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32168" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="690" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32288" g_stop="32358" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="761" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E343693" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30680" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32168"/>
          <exon e_start="32288" e_stop="32358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATG-CTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGC</genome_strand>
        <mrna_strand>TAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGNCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG.......................................................................................................................ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321845" ref_strand="+" ref_description="SGN-E321845 [cTOB-25-P16]">
      <seq>tagtatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaagattacgtttggtggtcaggtaaataattacaggaacacagtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30380" stop="32276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30680" g_stop="30985" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="431" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="31976" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="485" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E321845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30680" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="31976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAA</genome_strand>
        <mrna_strand>TAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAAGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358775" ref_strand="+" ref_description="SGN-E358775 [cLHT-24-G10]">
      <seq>tagtatactatacatttttttcttccccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagagatggatagtggtgtatgtagtggtagttttaggattgaattttggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtgttgattatgctgatggtccaactggaaggttttccaatggcaaaactactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattatgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30380" stop="32099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30680" g_stop="30985" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="428" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="31936" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="442" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E358775" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30680" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="31936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTAC</genome_strand>
        <mrna_strand>TAGTATACTATACATTTTTTTCTTCCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAG---ATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTTGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTGTTGATTATGCTGATGGTCCAACTGGAAGGTTTTCCAATGGCAAAACTACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTATGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324184" ref_strand="+" ref_description="SGN-E324184 [cTOC-4-B20]">
      <seq>tatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30383" stop="32396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30683" g_stop="30985" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="428" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32096" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="602" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E324184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30683" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTAC</genome_strand>
        <mrna_strand>TATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319862" ref_strand="+" ref_description="SGN-E319862 [cTOB-12-E1]">
      <seq>tatactatacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgatcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcatcaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30383" stop="32338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30683" g_stop="30985" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="428" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32038" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="544" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E319862" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30683" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTA</genome_strand>
        <mrna_strand>TATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCATCAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289904" ref_strand="+" ref_description="SGN-E289904 [cLET-9-I20]">
      <seq>tatactatacattttttttcttcccccttaacttctttttggttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30383" stop="31235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30683" g_stop="30935" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E289904" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30683" e_stop="30935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGA</genome_strand>
        <mrna_strand>TATACTATACATTTTTTTTCTTCCCCCTTAACTTCTTTTTGGTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567918" ref_strand="+" ref_description="SGN-E567918 [12119]">
      <seq>gtacacactttttttttcccccttagcttctttttgtgcgatgataatgggtgctttgggagtaaagagatggatagtggtgtatgtagtggtacttttaggattgaatttggggataaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtctttggctagggctaattacttgccttatggtattgattatcctgatggtccaactgggaggttttccaatggcaaaactactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattatgcatctgctgctgctggaattagagaagaaactggccaacaattgggagcaaggattacctttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggaggatgaaaattctgctgctaattatctgagcaagtgtatatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30388" stop="32341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30687" g_stop="30985" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="421" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32041" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="541" r_length="120" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E567918" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30687" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGA-AATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGA-GATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTC</genome_strand>
        <mrna_strand>GTACACACTTTTTTT-TTCCCCCTTAGCTTCTTTTTGTGCGATGATAATGGGTGCTTTGGGAGT-AA-A-GAGATGGATAGTGGTGTATGTAGTGGTACTTTTAGGATTGAATTTGGGGATAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCTTTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGGAGGTTTTCCAATGGCAAAACTACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTATGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGCCAACAATTG..............................................................................................................................GGAGCAAGGATTACCTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGGATGAAAATTCTGCTGCTAATTATCTGAGCAAGTGTATATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339221" ref_strand="+" ref_description="SGN-E339221 [cTOF-4-O19]">
      <seq>tacattttttttcttcccccttagcttctttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgttctaattcaacaatactctcaacaactaaagactttgtatgactatggagcaaggaagtttgtcttaattggagtgggccaaattggttgtagcccaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30390" stop="32661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30690" g_stop="30985" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="421" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32168" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="667" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32288" g_stop="32361" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="741" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E339221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30690" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32168"/>
          <exon e_start="32288" e_stop="32361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCT</genome_strand>
        <mrna_strand>TACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG.......................................................................................................................ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265551" ref_strand="+" ref_description="SGN-E265551 [cLEI-14-L23]">
      <seq>ttttgtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30419" stop="32350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30719" g_stop="30985" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="392" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32050" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="520" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E265551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30719" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATT</genome_strand>
        <mrna_strand>TTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327240" ref_strand="+" ref_description="SGN-E327240 [cTOC-19-O1]">
      <seq>gtttgatgaaatgggtgctggggaagtaaagaggagatggatagtggtgtatgtagtggtagttttaggattgaatttgggggtaaatgtaaatgcacaacaagtgccttgttattttatatttggtgattcattagtggataatgggaataacaacaatattcagtcattggctagggctaattacttgccttatggtattgattatcctgatggtccaactggaaggttttccaatggaaaaacaactgttgatgtcattgctgagcttttggggttcgatgattatattccaccctatgcatctgcaaggggtgaagacattctcaaaggtgttaattttgcatctgctgctgctggaattagagaagaaactggtcaacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattgggattaggcagcaatgattatctcaataattatttcatgccctcatattactccactagcagacaattttatcctgatncatatgctgatgttctaattcacaatactctnncacactaagactttgtatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="30423" stop="32601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30723" g_stop="30985" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="388" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31923" g_stop="32168" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="633" r_length="245" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32288" g_stop="32301" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="647" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E327240" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30723" e_stop="30985"/>
          <exon e_start="31672" e_stop="31796"/>
          <exon e_start="31923" e_stop="32168"/>
          <exon e_start="32288" e_stop="32301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTGGTTAGTATCTCATCTCACTTAAAAGTATTCTAATGTGTGTTATACTTTCTCTGTTTCAACTTATGTGACATGCACTATTTGATTTGATATAAAATTTAAAAAAGAAAAAAGGTTTTCTGAATTTTGTGATCTAGAACCTTAGACATTTGTGTAACATATATACTCTCTGTCCTTATTTATTTGTCCACTTTAAAAATGATACACCTATTAAAACAACAATGATTAGCACAGTTAAGTTATCATTTTACCCTTATTAAGTATGATTTCAAAAATAATGAATTAAAACTTTAAAAAATTCAAGAAGTTTAAATGAGGGTATAATATATATTTTTTTGTCATTTCTTGATTTGTCAAAATAGACAAGTAAATAGAAACAGCTAAAAGAGAAAATATGAACAAATAAATGAATGTAGCTTCTAATTATAATAAAATGACATGTTTAAGGGAGGACTAAAAAAGAAAGACGTGACACATAAATTGACGGCAAAGGTGTGTATAACATCTTATTACTTGAGTAGAGTTGATGACAACTTAAAGGACTATATATGCATTTTCCTAGAAAAGAAAGGTATAATTCGACATATCTTTTCATTTTTTTAAAAATTAGTAACATAAGTGATCAAAATGGTAATTAATAGTGATCAAAACTTAATATAAATATTGAATATGTTTAAACTAATTTACAGCTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATT-GGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTA</genome_strand>
        <mrna_strand>GTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCCTCATATTACTCCACTAGCAGACAATTTTATCCTGATNCATATGCTGATGTTCTAATTC-ACAATACTCTNNCACACT-AAG.......................................................................................................................ACTTTGTATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332124" ref_strand="+" ref_description="SGN-E332124 [cTOD-16-O6]">
      <seq>aacaattgggagcaaggattacgtttggtggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgttctaattcaacaatactctcaacaactaaagactttgtatgactatggagcaaggaagtttgtcttaattggagtgggccaaattggttgtagcccaaatgctctagcccaaaacagtcctgatggaagaacctgtgcagaaaatataaataatgcaaacaagttgttcaacaataggctaaagggtattgtggatgaattcaatggcaatacaccagatgcaaaattcatctacatcaatgcttatgatatcttccaagatttaattgacaatccctcagcatttggatttagagtaacgaatgctggatgttgtggagtaggaaggaataacgggcaaataacatgtcttccactacaaaatccttgccaaaatagagatgaatatgtattttgggatgcatttcatccaggtgaagctgcaaatatagttgttgggagaagatcatatagagctgaaagatcatcagatgcttatccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="31619" stop="33135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31789" g_stop="31796" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31923" g_stop="32168" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="254" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32288" g_stop="32543" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="510" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32638" g_stop="32835" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="708" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E332124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31789" e_stop="31796"/>
          <exon e_start="31923" e_stop="32168"/>
          <exon e_start="32288" e_stop="32543"/>
          <exon e_start="32638" e_stop="32835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGGTACTTACCGTGTTCTTCGTTTTAATTCATTTGTCATACTTTCCCTTTTAGTCTGTCTTTTAACTTCTAATAACACGTTATATTCACATACTGTTGCTACTTTTTTCGTTCACAAAATATTTATAGGGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTGGTAAATATTTCTTTCTCATGCGAGTCATTTTTTTTTAATAAACAGACTTAAAAAAAAATAGTATTGACAAACTTGACTTTTTGACAATGTTCAGGATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTG</genome_strand>
        <mrna_strand>AACAATTG..............................................................................................................................GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG.......................................................................................................................ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG..............................................................................................GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345643" ref_strand="+" ref_description="SGN-E345643 [cTOF-18-I22]">
      <seq>ggtcaggtaaataattacaggaacacagtgcaacaagtggtgcaaatacttggagatgaaaattctgctgctaattatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgttctaattcaacaatactctcaacaactaaaggtgagtttgaatcacctgattaaaagtaatcgataaacatataacatgtttaaagtaaagtacttgcgttttaatattagagataatatcataaaagatctaattggcttttacatcagactttgtatgactatggagcaaggaagtttgtcttaattggagtgggccaaattggttgtagcccaaatgctctagcccaaaacagtcctgatggaagaacctgtgcagaaaatataaataatgcaaacaagttgttcaacaataggctaaagggtattgtggatgaattcaatggcaatacaccagatgcaaaattcatctacatcaatgcttatgatatcttccaagatttaattgacaatccctcagcatttggatttagagtaacgaatgctggatgttgtggagtaggaaggaataacgggcaaataacatgtcttccactacaaaatccttgccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="31644" stop="33024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31944" g_stop="32543" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32638" g_stop="32724" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="687" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E345643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31944" e_stop="32543"/>
          <exon e_start="32638" e_stop="32724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTGGTAAATATTTCTTTCTCATGCGAGTCATTTTTTTTTAATAAACAGACTTAAAAAAAAATAGTATTGACAAACTTGACTTTTTGACAATGTTCAGGATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAA</genome_strand>
        <mrna_strand>GGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG..............................................................................................GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214301" ref_strand="-" ref_description="SGN-E214301 [cLEC-77-H20]">
      <seq>gctgctaatatttgagcaaatgcatttactcaattggattaggcagcaatgattatctcaataattatttcatgcctcaatattactccactagcagacaatttaatcctgatcaatatgctgatgttctaattcaacaatactctcaacaactaaagactttgtatgactatggagcaaggaagtttgtcttaattggagtgggccaaattggttgtagcccaaatgctctagcccaaaacagtcctgatggaagaacctgtgcagaaaatataaataatgcaaacaagttgttcaacaataggctaaagggtattgtggatgaattcaatggcaatacaccagatgcaaaattcatctacatcaatgcttatgatatcttccaagatttaattgacaatccctcagcatttggatttagagtaacgaatgctggatgttgtggagtaggaaggaataacgggcaaataacatgtcttccactacaaaatccttgccaaaatagagatgaatatgtattttgggatgcatttcatccaggtgaagctgcaaatatagttgttgggagaagatcatatagagctgaaagatcatcagatgcttatccttttgatattcagcgtttagctcaactatgaagataagagatgaagctaaaaatatatatatttttgtggaatttgtattattgtgttctatgatgtattatgagttgataataattaattttattatttgagaaatgttatggttactatgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="31710" stop="33285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32010" g_stop="32168" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32543" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="414" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32638" g_stop="32989" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="766" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E214301" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32010" e_stop="32168"/>
          <exon e_start="32288" e_stop="32543"/>
          <exon e_start="32638" e_stop="32989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTGGTAAATATTTCTTTCTCATGCGAGTCATTTTTTTTTAATAAACAGACTTAAAAAAAAATAGTATTGACAAACTTGACTTTTTGACAATGTTCAGGATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTACTATGACATGTG</genome_strand>
        <mrna_strand>GCTGCTAA-TATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG.......................................................................................................................ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG..............................................................................................GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTACTATGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218545" ref_strand="+" ref_description="SGN-E218545 [cLEL-18-E6](-)">
      <seq>tgaattcaatggcaatacaccagatgcaaaattcatctacatcaatgcttatgatatcttccaagatttaattgacaatccctcagcatttggatttagagtaacgaatgctggatgttgtggagtaggaaggaataacgggcaaataacatgtcttccactacaaaatccttgccaaaatagagatgaatatgtattttgggatgcatttcatccaggtgaagctgcaaatatagttgttgggagaagatcatatagagctgaaagatcatcagatgcttacccttttgatattcagcgtttagctcaactatgaagataagagatgaagctaaaaatatatatatttttgtggaatttgtattattgtgttctatgatgtattatgagttgataataattaattttactatttgagaaatgttatggttcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="32152" stop="33285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32452" g_stop="32543" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32638" g_stop="32979" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="434" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="454"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E218545" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32452" e_stop="32543"/>
          <exon e_start="32638" e_stop="32979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTGGTAAATATTTCTTTCTCATGCGAGTCATTTTTTTTTAATAAACAGACTTAAAAAAAAATAGTATTGACAAACTTGACTTTTTGACAATGTTCAGGATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTACT</genome_strand>
        <mrna_strand>TGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG..............................................................................................GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTACCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTACTATTTGAGAAATGTTATGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218953" ref_strand="+" ref_description="SGN-E218953 [cLEL-18-E6](-)">
      <seq>aatgcttatgaaatcttccaagatttaattgccaatccctcagcatttggatttagagtaacgaatgctggatgttgtggagtagaaaggaataacgggcaaataacatgtcttccactacaaaatccttgccaaaatagagatgaatatgtattttgggatgcatttcatccaggtgaagctgcaaatatagttgttgggagaagatcatatagagctgaaagatcatcagatgcttacccttttgatattcagcgtttagctcaactatgaagataagagatgaagctaaaaatatatatatttttgtggaatttgtattattgtgttctatgatgtattatgagttgataataattaattttattatttgagaaatgttatggttcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="32195" stop="33285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32495" g_stop="32543" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32638" g_stop="32979" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="391" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="411"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E218953" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32495" e_stop="32543"/>
          <exon e_start="32638" e_stop="32979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTGGTAAATATTTCTTTCTCATGCGAGTCATTTTTTTTTAATAAACAGACTTAAAAAAAAATAGTATTGACAAACTTGACTTTTTGACAATGTTCAGGATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTACT</genome_strand>
        <mrna_strand>AATGCTTATGAAATCTTCCAAGATTTAATTGCCAATCCCTCAGCATTTG..............................................................................................GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGAAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTACCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745380" ref_strand="+" ref_description="SGN-E745380 [GI|47105698]">
      <seq>gatcccactactcattactttaactaactacttagcctagctacttctaaagctaagggtctcaaaaatgggtagtgagatgaggagatgtatattggtggtgcttttagggtttatgagtttgggagattattatgaaacaaatgcacaacaagtgccttgttatttcatatttggtgattctttggttggtaatgggaataacaacaatattcagtcattggctaaggctaactacttgccttatggtattgatttctctggaggtccaactgggagattctctaatggaaaaactactgttgatgtcattgcggaacaattggggttcaatggtaatattccaccctatgcaactgctaggggcagagatgttctcagaggtgtcaattatgcttctgcagctgctggaattagagatgaaactggcagacaattgggaggaagaattagtttttctggacaagtgaataattacaggaacacagtgcaacaagtggtgcaaatattaggaaatgaaaatgcagctgctgattatcttaaaaaatgcatttactcagttggattaggcagcaatgattatctcaataattattttatgcctctttattatcccaccagcagacagttcactcctgatcaatatgctactgttcttattcaacaatatactcaacaactaaagattttatatagtaatggagcaaggaagtttgctttgattggagtgggccagatagggtgcagcccaaatgcattggcccaaaacagcccagatgggagaacttgtgtacaaagaatcaatgtagcaaatcaattattcaacaataaactcaaggcacttgttgataatttgaatggaaatacacctgatgcaaaattcatctacattgatgcttatggaatcttccaagacttaattgaaaatcctgctgcctttggatttagagtgacaaatgccggatgttgtggggtagggaggaacaacggacaaattacgtgtcttcctttccaaaggccatgcagaaataggaatgaatatctattttgggatgcatttcatccaactgaagctgcaaatatagttgtcgggaggagatcatatagagctcaaaaatcatctgatgcgtatccttatgatattagtcgtctagctcaagcttgattaaatatcaaatactctatatattaattattgtggaattgacatctttaattactataagatgtaatcacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="36121" stop="38799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36420" g_stop="36733" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36734" i_stop="37285" i_length="552">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37286" g_stop="37410" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="439" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37411" i_stop="37502" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37503" g_stop="37748" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="685" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37749" i_stop="37858" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37859" g_stop="38114" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="941" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38115" i_stop="38202" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38203" g_stop="38499" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1238" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1239" polyA_stop="1251"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E745380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1238</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36420" e_stop="36733"/>
          <exon e_start="37286" e_stop="37410"/>
          <exon e_start="37503" e_stop="37748"/>
          <exon e_start="37859" e_stop="38114"/>
          <exon e_start="38203" e_stop="38499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCACTACTCATTACTTTAACTAACTACTTAGCCTAGCTACTTCTAAAGCTAAGGGTCTCAAAAATGGGTAGTGAGATGAGGAGATGTATATTGGTGGTGCTTTTAGGGTTTATGAGTTTGGGAGATTATTATGAAACAAATGCACAACAAGTGCCTTGTTATTTCATATTTGGTGATTCTTTGGTTGATAATGGGAATAACAACAATATTCAGTCATTGGCTAAGGCTAACTACTTGCCTTATGGTATTGATTTCTCTGGAGGTCCAACTGGGAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTGGTAACACATGATTTCTTTTCTTTGTTTGTAAGGAGTGGATTCAGAATTTTAAGATAGTGAATAAACTTTTTTTTAAAATTATTGGAACTTTTACTATAGTATGATTTTGCACGTGCACCTGTTAATACCTATATGGTGAATTTGTTACTTTACGATATGAAATATTTAGTTTTGATTTGATATGAAGTTATTGAAAATATACAGTAGGGCTAATTCAAATAAGCAAAATTTGTTACAAATTTGTGTTTGGGATCCAATGTGTATGAAATTATGTTAATTAGTATTACATCATAAAATCAAATTCAAATCATATCTATTTTCTTTAAACTTGTACACTAATATCTCTTGCTCCTTTTATGATATATAACAAATTCATCTTTTGGTAATAAGAAATTTCATATATATGTTAGAATTCACCAAGCACCTTTGTCCCTAATATCAAAGGTGATCGTATTGATAAAAGTTAGAGTTGGAGGTGGAGGATGCTTATTATCCGAGACTCATGTTATCTGCTAGAATAAAATTTGAGATTAATTATGTTACATTTTACAGCGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTGGTACTACATTCATTTTTATTCTACTTATTTTTTAAAACAATTTTTTTTTGGTTTAATTAAAATTTGTTAAACTTTTAATGAAATTTTTATAGGGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTAGGAAATGAAAATGCAGCTGCTGATTATCTTAAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTATCTCAATAATTATTTTATGCCTCTTTATTATCCCACCAGCAGACAGTTCACTCCTGATCAATATGCTACTGTTCTTATTCAACAATATACTCAACAACTAAAGGTAAGTTGTATCCCTCCTCTTCTATTCACTTTTATTTGTCTACTCGCTCTTCAAAAAAAAAAAAAACAATCACTTCTTATTAATAATTATATGTTTTCTGGTGATCCTAGATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTGGTAATATTTTTCAATATTTCTAATTCTCCCCTTACATTTTCATATGTTTTTTTTTTTTTAATTATTCGACTCTACTAATTAATTTCAGGATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAA</genome_strand>
        <mrna_strand>GATCCCACTACTCATTACTTTAACTAACTACTTAGCCTAGCTACTTCTAAAGCTAAGGGTCTCAAAAATGGGTAGTGAGATGAGGAGATGTATATTGGTGGTGCTTTTAGGGTTTATGAGTTTGGGAGATTATTATGAAACAAATGCACAACAAGTGCCTTGTTATTTCATATTTGGTGATTCTTTGGTTGGTAATGGGAATAACAACAATATTCAGTCATTGGCTAAGGCTAACTACTTGCCTTATGGTATTGATTTCTCTGGAGGTCCAACTGGGAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTG............................................................................................GGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTAGGAAATGAAAATGCAGCTGCTGATTATCTTAAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTATCTCAATAATTATTTTATGCCTCTTTATTATCCCACCAGCAGACAGTTCACTCCTGATCAATATGCTACTGTTCTTATTCAACAATATACTCAACAACTAAAG..............................................................................................................ATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTG........................................................................................GATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCGTATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365885" ref_strand="+" ref_description="SGN-E365885 [cLPT-11-G12]">
      <seq>tacttagcctagctacttctaaagctaagggtctcaaaaatgggtagtgagatgaggagatgtatattggtggtgcttttagggtttatgagtttgggagattattatgaaacaaatgcacaacaagtgccttgttatttcatatttggtgattctttggttgataatgggaataacaacaatattcagtcattggctaaggctaactacttgccttatggtattgatttctctggaggtccaactgggagattctctaatggaaaaactactgttgatgtcattgcggaacaattggggttcaatggtaatattccaccctatgcaactgctaggggcagagatgttctcagaggtgtcaattatgcttctgcagctgctggaattagagatgaaactggcagacaattgagaggaagaattagtttttctggacaagtgaataattacaagaacacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="36148" stop="37852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36448" g_stop="36733" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36734" i_stop="37285" i_length="552">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37286" g_stop="37410" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="411" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37411" i_stop="37502" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37503" g_stop="37552" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="461" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E365885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36448" e_stop="36733"/>
          <exon e_start="37286" e_stop="37410"/>
          <exon e_start="37503" e_stop="37552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTAGCCTAGCTACTTCTAAAGCTAAGGGTCTCAAAAATGGGTAGTGAGATGAGGAGATGTATATTGGTGGTGCTTTTAGGGTTTATGAGTTTGGGAGATTATTATGAAACAAATGCACAACAAGTGCCTTGTTATTTCATATTTGGTGATTCTTTGGTTGATAATGGGAATAACAACAATATTCAGTCATTGGCTAAGGCTAACTACTTGCCTTATGGTATTGATTTCTCTGGAGGTCCAACTGGGAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTGGTAACACATGATTTCTTTTCTTTGTTTGTAAGGAGTGGATTCAGAATTTTAAGATAGTGAATAAACTTTTTTTTAAAATTATTGGAACTTTTACTATAGTATGATTTTGCACGTGCACCTGTTAATACCTATATGGTGAATTTGTTACTTTACGATATGAAATATTTAGTTTTGATTTGATATGAAGTTATTGAAAATATACAGTAGGGCTAATTCAAATAAGCAAAATTTGTTACAAATTTGTGTTTGGGATCCAATGTGTATGAAATTATGTTAATTAGTATTACATCATAAAATCAAATTCAAATCATATCTATTTTCTTTAAACTTGTACACTAATATCTCTTGCTCCTTTTATGATATATAACAAATTCATCTTTTGGTAATAAGAAATTTCATATATATGTTAGAATTCACCAAGCACCTTTGTCCCTAATATCAAAGGTGATCGTATTGATAAAAGTTAGAGTTGGAGGTGGAGGATGCTTATTATCCGAGACTCATGTTATCTGCTAGAATAAAATTTGAGATTAATTATGTTACATTTTACAGCGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTGGTACTACATTCATTTTTATTCTACTTATTTTTTAAAACAATTTTTTTTTGGTTTAATTAAAATTTGTTAAACTTTTAATGAAATTTTTATAGGGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGT</genome_strand>
        <mrna_strand>TACTTAGCCTAGCTACTTCTAAAGCTAAGGGTCTCAAAAATGGGTAGTGAGATGAGGAGATGTATATTGGTGGTGCTTTTAGGGTTTATGAGTTTGGGAGATTATTATGAAACAAATGCACAACAAGTGCCTTGTTATTTCATATTTGGTGATTCTTTGGTTGATAATGGGAATAACAACAATATTCAGTCATTGGCTAAGGCTAACTACTTGCCTTATGGTATTGATTTCTCTGGAGGTCCAACTGGGAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTG............................................................................................AGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAAGAACACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236486" ref_strand="+" ref_description="SGN-E236486 [cLED-13-J12]">
      <seq>gagattctctaatggaaaaactactgttgatgtcattgcggaacaattggggttcaatggtaatattccaccctatgcaactgctaggggcagagatgttctcagaggtgtcaattatgcttctgcagctgctggaattagagatgaaactggcagacaattgggaggaagaattagtttttctggacaagtgaataattacaggaacacagtgcaacaagtggtgcaaatattaggaaatgaaaatgcagctgctgattatcttaaaaaatgcatttactcagttggattaggcagcaatgattatctcaataattattttatgcctctttattatcccaccagcagacagttcactcctgatcaatatgctactgttcttattcaacaatatactcaacaactaaagattttatatagtaatggagcaaggaagtttgctttgattggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="36396" stop="38202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36696" g_stop="36733" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36734" i_stop="37285" i_length="552">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37286" g_stop="37410" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="163" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37411" i_stop="37502" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37503" g_stop="37748" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="409" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37749" i_stop="37858" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37859" g_stop="37902" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="453" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E236486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36696" e_stop="36733"/>
          <exon e_start="37286" e_stop="37410"/>
          <exon e_start="37503" e_stop="37748"/>
          <exon e_start="37859" e_stop="37902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTGGTAACACATGATTTCTTTTCTTTGTTTGTAAGGAGTGGATTCAGAATTTTAAGATAGTGAATAAACTTTTTTTTAAAATTATTGGAACTTTTACTATAGTATGATTTTGCACGTGCACCTGTTAATACCTATATGGTGAATTTGTTACTTTACGATATGAAATATTTAGTTTTGATTTGATATGAAGTTATTGAAAATATACAGTAGGGCTAATTCAAATAAGCAAAATTTGTTACAAATTTGTGTTTGGGATCCAATGTGTATGAAATTATGTTAATTAGTATTACATCATAAAATCAAATTCAAATCATATCTATTTTCTTTAAACTTGTACACTAATATCTCTTGCTCCTTTTATGATATATAACAAATTCATCTTTTGGTAATAAGAAATTTCATATATATGTTAGAATTCACCAAGCACCTTTGTCCCTAATATCAAAGGTGATCGTATTGATAAAAGTTAGAGTTGGAGGTGGAGGATGCTTATTATCCGAGACTCATGTTATCTGCTAGAATAAAATTTGAGATTAATTATGTTACATTTTACAGCGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTGGTACTACATTCATTTTTATTCTACTTATTTTTTAAAACAATTTTTTTTTGGTTTAATTAAAATTTGTTAAACTTTTAATGAAATTTTTATAGGGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTAGGAAATGAAAATGCAGCTGCTGATTATCTTAAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTATCTCAATAATTATTTTATGCCTCTTTATTATCCCACCAGCAGACAGTTCACTCCTGATCAATATGCTACTGTTCTTATTCAACAATATACTCAACAACTAAAGGTAAGTTGTATCCCTCCTCTTCTATTCACTTTTATTTGTCTACTCGCTCTTCAAAAAAAAAAAAAACAATCACTTCTTATTAATAATTATATGTTTTCTGGTGATCCTAGATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGT</genome_strand>
        <mrna_strand>GAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTG............................................................................................GGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTAGGAAATGAAAATGCAGCTGCTGATTATCTTAAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTATCTCAATAATTATTTTATGCCTCTTTATTATCCCACCAGCAGACAGTTCACTCCTGATCAATATGCTACTGTTCTTATTCAACAATATACTCAACAACTAAAG..............................................................................................................ATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240535" ref_strand="+" ref_description="SGN-E240535 [cLED-21-I15]">
      <seq>atggaaaaactactgttgatgtcattgcggaacaattggggttcaatggtaatattccaccctatgcaactgctaggggcagagatgttctcagaggtgtcaattatgcttctgcagctgctggaattagagatgaaactggcagacaattgggaggaagaattattttttctggacaagtgaataattacaggaacacagtgcaacaagtggtgcaaatattatgaaatgaaaatgcagctgctgattatcttaaaaaaatgcatttactcagttggattaggcagcaatgattattctcaataattatttaatgcctctttattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="36959" stop="37977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37286" g_stop="37410" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="152" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37411" i_stop="37502" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37503" g_stop="37677" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="329" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E240535" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37286" e_stop="37410"/>
          <exon e_start="37503" e_stop="37677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTGGTACTACATTCATTTTTATTCTACTTATTTTTTAAAACAATTTTTTTTTGGTTTAATTAAAATTTGTTAAACTTTTAATGAAATTTTTATAGGGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTAGGAAATGAAAATGCAGCTGCTGATTATCTT-AAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTA-TCTCAATAATTATTTTATGCCTCTTTATTATC</genome_strand>
        <mrna_strand>CGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTG............................................................................................GGAGGAAGAATTATTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTATGAAATGAAAATGCAGCTGCTGATTATCTTAAAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTATTCTCAATAATTATTTAATGCCTCTTTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236306" ref_strand="+" ref_description="SGN-E236306 [cLED-20-F19]">
      <seq>atatactcaacaactaaagattttatatagtaatggagcaaggaagtttgctttgattggagtgggccagatagggtgcagcccaaatgcattggcccaaaacagcccagatgggagaacttgtgtacaaagaatcaatgtagcaaatcaattattcaacaataaactcaaggcacttgttgataatttgaatggaaatacacctgatgcaaaattcatctacattgatgcttatggaatcttccaagacttaattgaaaatcctgctgcctttggatttagagtgacaaatgccggatgttgtggggtagggaggaacaacggacaaattacgtgtcttcctttccaaaggccatgcagaaataggaatgaatatctattttgggatgcatttcatccaactgaagctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="37430" stop="38641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37730" g_stop="37748" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37749" i_stop="37858" i_length="110">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37859" g_stop="38114" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="275" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38115" i_stop="38202" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38203" g_stop="38341" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="414" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E236306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37730" e_stop="37748"/>
          <exon e_start="37859" e_stop="38114"/>
          <exon e_start="38203" e_stop="38341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTCAACAACTAAAGGTAAGTTGTATCCCTCCTCTTCTATTCACTTTTATTTGTCTACTCGCTCTTCAAAAAAAAAAAAAACAATCACTTCTTATTAATAATTATATGTTTTCTGGTGATCCTAGATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTGGTAATATTTTTCAATATTTCTAATTCTCCCCTTACATTTTCATATGTTTTTTTTTTTTTAATTATTCGACTCTACTAATTAATTTCAGGATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAA</genome_strand>
        <mrna_strand>ATATACTCAACAACTAAAG..............................................................................................................ATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTG........................................................................................GATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240015" ref_strand="+" ref_description="SGN-E240015 [cLED-29-N10]">
      <seq>atatactcaacaactaaagattttatatagtaatggagcaaggaagtttgctttgattggagtgggccagatagggtgcagcccaaatgcattggcccaaaacagcccagatgggagaacttgtgtacaaagaatcaatgtagcaaatcaattattcaacaataaactcaaggcacttgttgataatttgaatggaaatacacctgatgcaaaattcatctacattgatgcttatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="37430" stop="38378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37730" g_stop="37748" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37749" i_stop="37858" i_length="110">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37859" g_stop="38078" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="239" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E240015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37730" e_stop="37748"/>
          <exon e_start="37859" e_stop="38078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTCAACAACTAAAGGTAAGTTGTATCCCTCCTCTTCTATTCACTTTTATTTGTCTACTCGCTCTTCAAAAAAAAAAAAAACAATCACTTCTTATTAATAATTATATGTTTTCTGGTGATCCTAGATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAA</genome_strand>
        <mrna_strand>ATATACTCAACAACTAAAG..............................................................................................................ATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250859" ref_strand="-" ref_description="SGN-E250859 [cLEG-13-H19]">
      <seq>gcccagatgggagaacttgtgtacaaagaatcaatgtagcaaatcaattattcaacaataaactcaaggcacttgttgataatttgaatggaaatacacctgatgcaaaattcatctacattgatgcttatggaatcttccaagacttaattgaaaatcctgctgcctttggatttagagtgacaaatgccggatgttgtggggtagggaggaacaacggacaaattacgtgtcttcctttccaaaggccatgcagaaataggaatgaatatctattttgggatgcatttcatccaactgaagctgcaaatatagttgtcgggaggagatcatatagagctcaaaaatcatctgatgcatatccttatgatattagtcgtctagctcaagcttgattaaatatcaaatactctatatattaattattgtggaattgacatcttaaattactataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="37644" stop="38786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37944" g_stop="38114" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38115" i_stop="38202" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38203" g_stop="38486" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="455" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E250859" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250859" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37944" e_stop="38114"/>
          <exon e_start="38203" e_stop="38486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTGGTAATATTTTTCAATATTTCTAATTCTCCCCTTACATTTTCATATGTTTTTTTTTTTTTAATTATTCGACTCTACTAATTAATTTCAGGATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAA</genome_strand>
        <mrna_strand>GCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTG........................................................................................GATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTAAATTACTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279303" ref_strand="+" ref_description="SGN-E279303 [cLEL-4-H17](-)">
      <seq>gacttaattgaaaatcctgctgcctttggatttagagtgacaaatgccggatgttgtggggtagggaggaacaacggacaaattacgtgtcttcctttccaaaggccatgcagaaataggaatgaatatctattttgggatgcatttcatccaactgaagctgcaaatatagttgtcgggaggagatcatatagagctcaaaaatcatctgatgcatatccttatgatattagtcgtctagctcaagcttgattaaatatcaaatactctatatattaattattgtggaattgacatctttaattactataagatgtaatcacaagtgtttaatatgtttttagtgctttttgctttgttttaatcataatatgttagtattttaagtccccactttttaatgaagaattctcttttatgaaaaaaaaaaaaaaaaaaaaactcgagacctcgtgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="37787" stop="38896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38087" g_stop="38114" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38115" i_stop="38202" i_length="88">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38203" g_stop="38590" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="416" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="442"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E279303" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38087" e_stop="38114"/>
          <exon e_start="38203" e_stop="38590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTAATTGAAAATCCTGCTGCCTTTGGTAATATTTTTCAATATTTCTAATTCTCCCCTTACATTTTCATATGTTTTTTTTTTTTTAATTATTCGACTCTACTAATTAATTTCAGGATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAAGTGTTTAATATGTTTTTAGTGCTTTTTGCTTTGTTTTAATCATAATATGTTAGTATTTTAAGTCCCCACTTTTTAATGAAGAATTTTTTTT</genome_strand>
        <mrna_strand>GACTTAATTGAAAATCCTGCTGCCTTTG........................................................................................GATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAAGTGTTTAATATGTTTTTAGTGCTTTTTGCTTTGTTTTAATCATAATATGTTAGTATTTTAAGTCCCCACTTTTTAATGAAGAATTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277536" ref_strand="+" ref_description="SGN-E277536 [cLER-6-C13]">
      <seq>agaaataggaatgaatatctattttgggatgcatttcatccaactgaagctgcaaatatagttgtcgggaggagatcatatagagctcaaaaatcatctgatgcatatccttatgatattagtcgtctagctcaagcttgattaaatatcaaatactctatatattaattattgtggaattgacatctttaattactataagatgtaatcacaagtgtttaataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="37986" stop="38809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38286" g_stop="38508" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="224" polyA_stop="246"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E277536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38286" e_stop="38508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAAGTGTTTAAT</genome_strand>
        <mrna_strand>AGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAAGTGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275393" ref_strand="+" ref_description="SGN-E275393 [cLEN-10-M16]">
      <seq>tgatttgctaaaatcaactcaggcaataacaaaatcattcttccatgcacaactctagaaaccactttgttaatgaagttgctaaggctgatgggtctgacattattgaaggtctagatgttatctttcttaggtatcagaaccggatttgtatgagtaacaactaacaaatctgggtggttcctgtccccccataaaagcatgcacaactatggtatcctccttaataatttcccaagccgattgacaaaaaagacccgtaaaaccatctggttcactagaactttctccacttggatcaaaaactgctgctttaacttctgcctcatcaggtgctctattctgttctcattctgttctgcattgatcaactttggaatgttttctaatagttcaaagtcctcagggaaactatcctccgtgaattgattttgaaaaaactttactgcttcattggccacctctgtctgttcttccacccatactctgtatgaattttggatcctgtacagctgcaatctctttcttcttccattcacataagcatgaaagaacttggaatttctttccccttattcaaagcactgcatgcctgctttctgtctccaaaattcctcctccaaatgcatgtatctagctaagtcagcttgggatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="69630" stop="70888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69930" g_stop="70588" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E275393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69930" e_stop="70588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGCTAAAATCAACTCAGGCAATAACAAAATCATTCTTCCATGCACAACTCTAGAAACCACTTTGTTAATGAAGTTGCTAAGGCTGATGGGTCTGACATTATTGAAGGTCTAGATGTTATCTTTCTTAGGTATCAGAACCGGATTTGTATGAGTAACAACTAACAAATCTGGGTGGTTCCTGTCCCCCCATAAAAGCATGCACAACTATGGTATCCTCCTTAATAATTTCCCAAGCCGATTGACAAAAAAGACCCGTAAAACCATCTGGTTCACTAGAACTTTCTCCACTTGGATCAAAAACTGCTGCTTTAACTTCTGCCTCATCAGGTGCTCTATTCTGTTCTCATTCTGTTCTGCATTGATCAACTTTGGAATGTTTTCTAATAGTTCAAAGTCCTCAGGGAAACTATCCTCCGTGAATTGATTTTGAAAAAACTTTACTGCTTCATTGGCCACCTCTGTCTGTTCTTCCACCCATACTCTGTATGAATTTTGGATCCTGTACAGCTGCAATCTCTTTCTTCTTCCATTCACATAAGCATGAAAGAACTTGGAATTTCTTTCCCCTTATTCAAAGCACTGCATGCCTGCTTTCTGTCTCCAAAATTCCTCCTCCAAATGCATGTATCTAGCTAAGTCAGCTTGGGATTTATG</genome_strand>
        <mrna_strand>TGATTTGCTAAAATCAACTCAGGCAATAACAAAATCATTCTTCCATGCACAACTCTAGAAACCACTTTGTTAATGAAGTTGCTAAGGCTGATGGGTCTGACATTATTGAAGGTCTAGATGTTATCTTTCTTAGGTATCAGAACCGGATTTGTATGAGTAACAACTAACAAATCTGGGTGGTTCCTGTCCCCCCATAAAAGCATGCACAACTATGGTATCCTCCTTAATAATTTCCCAAGCCGATTGACAAAAAAGACCCGTAAAACCATCTGGTTCACTAGAACTTTCTCCACTTGGATCAAAAACTGCTGCTTTAACTTCTGCCTCATCAGGTGCTCTATTCTGTTCTCATTCTGTTCTGCATTGATCAACTTTGGAATGTTTTCTAATAGTTCAAAGTCCTCAGGGAAACTATCCTCCGTGAATTGATTTTGAAAAAACTTTACTGCTTCATTGGCCACCTCTGTCTGTTCTTCCACCCATACTCTGTATGAATTTTGGATCCTGTACAGCTGCAATCTCTTTCTTCTTCCATTCACATAAGCATGAAAGAACTTGGAATTTCTTTCCCCTTATTCAAAGCACTGCATGCCTGCTTTCTGTCTCCAAAATTCCTCCTCCAAATGCATGTATCTAGCTAAGTCAGCTTGGGATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541899" ref_strand="+" ref_description="SGN-E541899 [TUS-62-O21]">
      <seq>ataaaatccaatatatatttttctttctcattctcctgaaatggcttgttatggcaagatatttgccacaatatttatagttttgaacttaaaaacatttgttgaaggtgcaccacaagtaccatgttacttcatatttggagattcgttacttgataatggaaacaacaatgaacttaacacaacggcaaaggctaattacccaccttacggggtggacttccagggtggtcgtccgaccggccgtttcaccaacggccgtaacacggctgacttcctagcggaatacttgggatttgatcactacattcccccttttgcaagtgtaaaagatagcgagatcttggaaggtgtaaattatgcatctggttcagctggaattcgcaacgacagtggaagtcatcttggtgatcggatttacttgggcagacaattggagaatcatcaaacaacaatttcgcgtatagctaatctggtggggaatacaacttcagctcaaaagcacttgaataaatgcttattcatagttggaataggcagcaatgactacatcaacaattacttgatgcctgaaatatatccctcaagtcatttatatacaccaacacaatatgcaactgccttgattgatcaatattcacaacatttgangactttgtatgaagatggagcaagggaagttgccttatttggactaggccaaataggctgcattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="75986" stop="77980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76286" g_stop="76566" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76567" i_stop="77049" i_length="483">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77050" g_stop="77174" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="406" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77175" i_stop="77274" i_length="100">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77275" g_stop="77520" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="652" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77521" i_stop="77615" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77616" g_stop="77680" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="717" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E541899" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76286" e_stop="76566"/>
          <exon e_start="77050" e_stop="77174"/>
          <exon e_start="77275" e_stop="77520"/>
          <exon e_start="77616" e_stop="77680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATCCAATATATATTTTTCTTTCTCATTCTCCTGAAATGGCTTGTTATGGCAAGATATTTGCCACAATATTTATAGTTTTGAACTTAAAAACATTTGTTGAAGGTGCACCACAAGTACCATGTTACTTCATATTTGGAGATTCGTTACTTGATAATGGAAACAACAATGAACTTAACACAACGGCAAAGGCTAATTACCCACCTTACGGGGTGGACTTCCAGGGTGGTCGTCCGACCGGCCGTTTCACCAACGGCCGTAACACGGCTGACTTCCTAGGTCTCAAAGTCTCAACTACTTAATTAGCTTGTTTCTAAAAATCTTCATTTCTTTTGATTTCCTATTTAATTATATAATCTTGAACATGCAATTCTGCTTTTGAGTTGAGTTTTTATTTTCTTAATATGGTAATCACCACGTATTATACTGTCCACGCACCAGATGTTTAGTGAGCCGGGAGACCATAGATGTCTCACATATTGCGAATGAGTTGAATGTTGTAACACTATAAGAAAATTGTGAATTACATGGGGATTAATATGACAATTCGCAGAAAACTTATTTTCCTGCAAATTTTCATACTAATTCCCAGGAAAATCCTCATGTAAATCACAGTTTTCTTATAGCGTAATCTCCATACACAGCTAGTTGATCTTAGTCAAATCATACCTAATGATCAGCCTAGCTTTCTGGATTGATTTAGATCCAAAACTCATCTCCGTTATACACATATAATTGACTCGATTTTCTCCATGTTTGCAGCGGAATACTTGGGATTTGATCACTACATTCCCCCTTTTGCAAGTGTAAAAGATAGCGAGATCTTGGAAGGTGTAAATTATGCATCTGGTTCAGCTGGAATTCGCAACGACAGTGGAAGTCATCTTGTAAGTGTAGTGTGTTATACATATGCTACATTTCACTCATCCAATGCAAAAAAATGTCTCGTAAATGAGAAAAATATAAGTAACTTCTTCGTTTTTCCAGGGTGATCGGATTTACTTGGGCAGACAATTGGAGAATCATCAAACAACAATTTCGCGTATAGCTAATCTGGTGGGGAATACAACTTCAGCTCAAAAGCACTTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCATTTATATACACCAACACAATATGCAACTGCCTTGATTGATCAATATTCACAACATTTGAGGGTACGTTACAACTCCAATCCATTTACCAATAATTTTAAATTACAGTCTAAAGTTTAGAAATAATACTTTTTTTTCTACTTATACTCTTTGATTAGACTTTGTATGAAGATGGAGCAAGGAAAGTTGCCTTATTTGGACTAGGCCAAATAGGCTGCATTCC</genome_strand>
        <mrna_strand>ATAAAATCCAATATATATTTTTCTTTCTCATTCTCCTGAAATGGCTTGTTATGGCAAGATATTTGCCACAATATTTATAGTTTTGAACTTAAAAACATTTGTTGAAGGTGCACCACAAGTACCATGTTACTTCATATTTGGAGATTCGTTACTTGATAATGGAAACAACAATGAACTTAACACAACGGCAAAGGCTAATTACCCACCTTACGGGGTGGACTTCCAGGGTGGTCGTCCGACCGGCCGTTTCACCAACGGCCGTAACACGGCTGACTTCCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAATACTTGGGATTTGATCACTACATTCCCCCTTTTGCAAGTGTAAAAGATAGCGAGATCTTGGAAGGTGTAAATTATGCATCTGGTTCAGCTGGAATTCGCAACGACAGTGGAAGTCATCTT....................................................................................................GGTGATCGGATTTACTTGGGCAGACAATTGGAGAATCATCAAACAACAATTTCGCGTATAGCTAATCTGGTGGGGAATACAACTTCAGCTCAAAAGCACTTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCATTTATATACACCAACACAATATGCAACTGCCTTGATTGATCAATATTCACAACATTTGANG...............................................................................................ACTTTGTATGAAGATGGAGCAAGGGAAGTTGCCTTATTTGGACTAGGCCAAATAGGCTGCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300841" ref_strand="+" ref_description="SGN-E300841 [cLEW-8-D5]">
      <seq>taaaatccaatatatatttttctttctcattctcctgaaatggcttgttatggcaagatatttgccacaatatttatagttttgaacttaaaaacatttgttgaaggtgcaccacaagtaccatgttacttcatatttggagattcgttacttgataatggaaacaacaatgaacttaacacaacggcaaaggctaattacccaccttacggggtggacttccagggtggtcgtccgaccggccgtttcaccaacggccgtaacacggctgacttcctagcggaatacttgggatttgatcactacattcccccttttgcaagtgtaaaagatagcgagatcttggaaggtgtaaattatgcatctggttcagctggaattcgcaacgacagtggaagtcatcttggtgatcggatttacttgggcagacaattggagaatcatcaaacaacaatttcgcgtatagctaatctggtggggaatacaacttcagctcaaaagcacttgaataaatgcttattcatagttggaataggcagcaatgactacatcaacaattacttgatgcctgaaatatatccctcaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="75987" stop="77759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76287" g_stop="76566" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76567" i_stop="77049" i_length="483">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77050" g_stop="77174" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="405" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77175" i_stop="77274" i_length="100">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77275" g_stop="77459" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="590" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E300841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76287" e_stop="76566"/>
          <exon e_start="77050" e_stop="77174"/>
          <exon e_start="77275" e_stop="77459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCCAATATATATTTTTCTTTCTCATTCTCCTGAAATGGCTTGTTATGGCAAGATATTTGCCACAATATTTATAGTTTTGAACTTAAAAACATTTGTTGAAGGTGCACCACAAGTACCATGTTACTTCATATTTGGAGATTCGTTACTTGATAATGGAAACAACAATGAACTTAACACAACGGCAAAGGCTAATTACCCACCTTACGGGGTGGACTTCCAGGGTGGTCGTCCGACCGGCCGTTTCACCAACGGCCGTAACACGGCTGACTTCCTAGGTCTCAAAGTCTCAACTACTTAATTAGCTTGTTTCTAAAAATCTTCATTTCTTTTGATTTCCTATTTAATTATATAATCTTGAACATGCAATTCTGCTTTTGAGTTGAGTTTTTATTTTCTTAATATGGTAATCACCACGTATTATACTGTCCACGCACCAGATGTTTAGTGAGCCGGGAGACCATAGATGTCTCACATATTGCGAATGAGTTGAATGTTGTAACACTATAAGAAAATTGTGAATTACATGGGGATTAATATGACAATTCGCAGAAAACTTATTTTCCTGCAAATTTTCATACTAATTCCCAGGAAAATCCTCATGTAAATCACAGTTTTCTTATAGCGTAATCTCCATACACAGCTAGTTGATCTTAGTCAAATCATACCTAATGATCAGCCTAGCTTTCTGGATTGATTTAGATCCAAAACTCATCTCCGTTATACACATATAATTGACTCGATTTTCTCCATGTTTGCAGCGGAATACTTGGGATTTGATCACTACATTCCCCCTTTTGCAAGTGTAAAAGATAGCGAGATCTTGGAAGGTGTAAATTATGCATCTGGTTCAGCTGGAATTCGCAACGACAGTGGAAGTCATCTTGTAAGTGTAGTGTGTTATACATATGCTACATTTCACTCATCCAATGCAAAAAAATGTCTCGTAAATGAGAAAAATATAAGTAACTTCTTCGTTTTTCCAGGGTGATCGGATTTACTTGGGCAGACAATTGGAGAATCATCAAACAACAATTTCGCGTATAGCTAATCTGGTGGGGAATACAACTTCAGCTCAAAAGCACTTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCA</genome_strand>
        <mrna_strand>TAAAATCCAATATATATTTTTCTTTCTCATTCTCCTGAAATGGCTTGTTATGGCAAGATATTTGCCACAATATTTATAGTTTTGAACTTAAAAACATTTGTTGAAGGTGCACCACAAGTACCATGTTACTTCATATTTGGAGATTCGTTACTTGATAATGGAAACAACAATGAACTTAACACAACGGCAAAGGCTAATTACCCACCTTACGGGGTGGACTTCCAGGGTGGTCGTCCGACCGGCCGTTTCACCAACGGCCGTAACACGGCTGACTTCCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAATACTTGGGATTTGATCACTACATTCCCCCTTTTGCAAGTGTAAAAGATAGCGAGATCTTGGAAGGTGTAAATTATGCATCTGGTTCAGCTGGAATTCGCAACGACAGTGGAAGTCATCTT....................................................................................................GGTGATCGGATTTACTTGGGCAGACAATTGGAGAATCATCAAACAACAATTTCGCGTATAGCTAATCTGGTGGGGAATACAACTTCAGCTCAAAAGCACTTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541897" ref_strand="+" ref_description="SGN-E541897 [TUS-62-O21](-)">
      <seq>ttgaataaatgcttattcatagttggaataggcagcaatgactacatcaacaattacttgatgcctgaaatatatccctcaagtcatttatatacaccaacacaatatgcaactgccttgattgatcaatattcacaacatttgaggactttgtatgaagatggagcaaggaaagttgccttatttggactaggccaaataggctgcattccagcagagttacaaaaacacgatacacgtagatgtgtgagctcaacaaataacgcgattcaacaatttaacagcaagctaaagtctcttgtaggtgatctcaatactaattttccagacgcgaagttcacctatataaacatgtacagcatttcatcaatcatcgatccacttagcgtgtttactcgtccatgctgtaacgttttggaaacgatgcctgaaggacaatgtgttcctggagaaactccatgctttcttagagggatttatcttttctatgataattttcatccaacagagattgccaatagaatcgcgactagcagagcttataatgctcttctaccgtctgatgcttatcctatggatattcatcacttgatcaggacgaacaatgttgtgtatgatgagtaatgaactcaggtgtttcgctagttgattgaatatatacgtgtaataagttgaacttatgatctgcctattttgggatttttctaatttgttcccacatttggctacaagatatacccttcgtacgtatgagccctgaaatgcccttatttgtatgatcggacacattttaaaatattattacatgtatcatttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="77074" stop="78667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77374" g_stop="77520" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77521" i_stop="77615" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77616" g_stop="77844" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="376" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77845" i_stop="77923" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77924" g_stop="78354" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="807" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="820" polyA_stop="829"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E541897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77374" e_stop="77520"/>
          <exon e_start="77616" e_stop="77844"/>
          <exon e_start="77924" e_stop="78354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCATTTATATACACCAACACAATATGCAACTGCCTTGATTGATCAATATTCACAACATTTGAGGGTACGTTACAACTCCAATCCATTTACCAATAATTTTAAATTACAGTCTAAAGTTTAGAAATAATACTTTTTTTTCTACTTATACTCTTTGATTAGACTTTGTATGAAGATGGAGCAAGGAAAGTTGCCTTATTTGGACTAGGCCAAATAGGCTGCATTCCAGCAGAGTTACAAAAACACGATACACGTAGATGTGTGAGCTCAACAAATAACGCGATTCAACAATTTAACAGCAAGCTAAAGTCTCTTGTAGGTGATCTCAATACTAATTTTCCAGACGCGAAGTTCACCTATATAAACATGTACAGCATTTCATCAATCATCGGTATGGTACTCAAACATTATTTTTTCCTCTAATGACATATTCTGTGACATAATTTATTTTTTACTTGTTCATATTTCAGATCCACTTAGCGTGTTTACTCGTCCATGCTGTAACGTTTTGGAAACGATGCCTGAAGGACAATGTGTTCCTGGAGAAACTCCATGCTTTCTTAGAGGGATTTATCTTTTCTATGATAATTTTCATCCAACAGAGATTGCCAATAGAATCGCGACTAGCAGAGCTTATAATGCTCTTCTACCGTCTGATGCTTATCCTATGGATATTCATCACTTGATCAGGACGAACAATGTTGTGTATGATGAGTAATGAACTCAGGTGTTTCGCTAGTTGATTGAATATATACGTGTAATAAGTTGAACTTATGATCTGCCTATTTTGGGATTTTTCTAATTTGTTCCCACATTTGGCTACAAGATATACCCTTCGTACGTATGAGCCCTGAAATGCCCTTATTTGTATGATCGGACACATTTTAAAATATTATTACAT</genome_strand>
        <mrna_strand>TTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCATTTATATACACCAACACAATATGCAACTGCCTTGATTGATCAATATTCACAACATTTGAGG...............................................................................................ACTTTGTATGAAGATGGAGCAAGGAAAGTTGCCTTATTTGGACTAGGCCAAATAGGCTGCATTCCAGCAGAGTTACAAAAACACGATACACGTAGATGTGTGAGCTCAACAAATAACGCGATTCAACAATTTAACAGCAAGCTAAAGTCTCTTGTAGGTGATCTCAATACTAATTTTCCAGACGCGAAGTTCACCTATATAAACATGTACAGCATTTCATCAATCATCG...............................................................................ATCCACTTAGCGTGTTTACTCGTCCATGCTGTAACGTTTTGGAAACGATGCCTGAAGGACAATGTGTTCCTGGAGAAACTCCATGCTTTCTTAGAGGGATTTATCTTTTCTATGATAATTTTCATCCAACAGAGATTGCCAATAGAATCGCGACTAGCAGAGCTTATAATGCTCTTCTACCGTCTGATGCTTATCCTATGGATATTCATCACTTGATCAGGACGAACAATGTTGTGTATGATGAGTAATGAACTCAGGTGTTTCGCTAGTTGATTGAATATATACGTGTAATAAGTTGAACTTATGATCTGCCTATTTTGGGATTTTTCTAATTTGTTCCCACATTTGGCTACAAGATATACCCTTCGTACGTATGAGCCCTGAAATGCCCTTATTTGTATGATCGGACACATTTTAAAATATTATTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203653" ref_strand="+" ref_description="SGN-E203653 [cLEC-15-I17]">
      <seq>accattataattgagtaataatttctcaattatatttttcatcttcttcttgaatttaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85650" stop="88120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85950" g_stop="86251" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="427" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="87820" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="482" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E203653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85950" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="87820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTATAATTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTC</genome_strand>
        <mrna_strand>ACCATTATAATTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307556" ref_strand="+" ref_description="SGN-E307556 [cLEY-24-D23]">
      <seq>aattgagtaataatttctcaattatatttttcatcttcttcttgaatttaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85658" stop="88255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85958" g_stop="86251" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="419" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="87955" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="609" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E307556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85958" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="87955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGT</genome_strand>
        <mrna_strand>AATTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708852" ref_strand="+" ref_description="SGN-E708852 [FA36DG10]">
      <seq>ctgattaataatttctcaattatatttttcatcttcttcttgaatttaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaatangttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85661" stop="88556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85960" g_stop="86251" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="417" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="88011" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="663" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88087" g_stop="88256" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="833" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E708852" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85960" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="88011"/>
          <exon e_start="88087" e_stop="88256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATAC</genome_strand>
        <mrna_strand>CTGATTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATANGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233606" ref_strand="+" ref_description="SGN-E233606 [cLED-14-E21]">
      <seq>ttgagtaataatttctcaattatatttttcatcttcttcttgaatttaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85660" stop="88083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85960" g_stop="86251" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="417" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="87783" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="435" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E233606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85960" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="87783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTG</genome_strand>
        <mrna_strand>TTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240834" ref_strand="+" ref_description="SGN-E240834 [cLED-24-P3]">
      <seq>ttgagtaataatttctcaattatatttttcatcttcttcttgaatttaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85660" stop="87043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85960" g_stop="86251" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86743" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="322" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E240834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85960" e_stop="86251"/>
          <exon e_start="86714" e_stop="86743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATAC</genome_strand>
        <mrna_strand>TTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332820" ref_strand="+" ref_description="SGN-E332820 [cTOD-18-B18]">
      <seq>ataatttctcaattatatttttcatcttcttcttgaatttaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcnaataggttgcattccagatcaattgaaccaacacagcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85667" stop="88480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85967" g_stop="86251" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="410" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="88011" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="656" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88087" g_stop="88180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="750" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E332820" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85967" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="88011"/>
          <exon e_start="88087" e_stop="88180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTT</genome_strand>
        <mrna_strand>ATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCNAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341513" ref_strand="+" ref_description="SGN-E341513 [cTOE-23-A13]">
      <seq>taatttctcaattatatttttcatcttcttcttgaatgtaattctctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgttacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85668" stop="88183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85968" g_stop="86251" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="409" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="87883" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="527" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E341513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85968" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCA</genome_strand>
        <mrna_strand>TAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATGTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266570" ref_strand="+" ref_description="SGN-E266570 [cLEI-5-B18]">
      <seq>tcatcttcttcttgaattttattttctcaatggcgtgctatgttacaattatatttagtattgtgttatatttagttttgaacttagttgaaggtgcaccggaagtaccttgctatttcatttttggggattcgctacttgataatggcaataataatgaccttgacaccgcggctagggctaattatccaccttatggagttgatttcccggatggtccgactggccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcattttggttatcggatttacttgggcaaacaattggagaatcataaagtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85688" stop="88113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85988" g_stop="86251" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="389" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="87813" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="437" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E266570" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85988" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="87813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACA</genome_strand>
        <mrna_strand>TCATCTTCTTCTTGAATTTTATTTTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGCTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317312" ref_strand="+" ref_description="SGN-E317312 [cTOA-28-L24]">
      <seq>cgactggccgattcaccaatggccgaaatatagctgactttctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgaaattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcatattgctgatttgctacgaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaatagggtgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaacatgtatagcatctcatcagcgattgctataactctattgcataatccatgctgtcaaatctctaaaactatgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85907" stop="88757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86207" g_stop="86251" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="170" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="88011" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="416" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88087" g_stop="88315" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="645" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88407" g_stop="88457" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="696" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E317312" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86207" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="88011"/>
          <exon e_start="88087" e_stop="88315"/>
          <exon e_start="88407" e_stop="88457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTGGTAAGTGTTTTTACTAACCTTATAAGCTGGTCAAATAAATAAATTTTAATTGGCTAATCGAAGCGGACTACTGTTTGTTTTCATTTTGCAGCTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTG</genome_strand>
        <mrna_strand>CGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTTCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAAATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCATATTGCTGATTTGCTACGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGGTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTG...........................................................................................CTATAACTCTATTGCATAATCCATGCTGTCAAATCTCTAAAACTATGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321079" ref_strand="+" ref_description="SGN-E321079 [cTOB-13-G7]">
      <seq>gccgattcaccaatggccgaaatatagctgacttcctagctgaacaccttgattttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaacatgtatagcatctcatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="85913" stop="88611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="86251" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86714" g_stop="86838" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="164" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87766" g_stop="88011" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="410" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88087" g_stop="88311" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="635" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E321079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="86251"/>
          <exon e_start="86714" e_stop="86838"/>
          <exon e_start="87766" e_stop="88011"/>
          <exon e_start="88087" e_stop="88311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAGGTCTCTTTCTCTTTCTCACTTTTTCTTTGCCGCTTTATGATTTACGTTTCGTTGAAGCGTGTGATTATTATTTCATTAATGTATCGAGAAAATATATAAGTATCCATCGAAATTACAGACACACTTTAACAAATTAAACTAAGGTCATATTACCCCTGAACTTTTTTAAAAAAAAAAATTGTGTGAACCTTTTTGGTTTATATCTCTCACGCGTCTCAATTGCGTGGAGTTACGGAGTGTGTCACGTAAGACTATAGGTGTACAAAAATTTTTAAAAAAAAGTTCAGAGGTAATAGGATCTTAGTTTAATTAATGTGTGTCTCTGAGGTTTCGATCATAGTGTAGGAAATACTTGTGCCTTATTCCTTTTATTATTTGTCTTGTTTAGCATAGCAATTTGATTAGTTTTAACTTAATTATTTTTTATATCCTTTAACTTATGTTTTATTTTGTTAAATATAGCTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCG</genome_strand>
        <mrna_strand>GCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322800" ref_strand="+" ref_description="SGN-E322800 [cTOB-30-C10]">
      <seq>ttttgatcactacataccatcttttgcaagcgcaacgggtgatgagattttggaaggtgtgaattatgcatctggttcagctggaattcgaaacgatacgggaagtcatcttggttatcggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaatttttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaacatgtatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="86427" stop="88600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86727" g_stop="86838" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87766" g_stop="88011" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="358" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88087" g_stop="88300" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="573" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E322800" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86727" e_stop="86838"/>
          <exon e_start="87766" e_stop="88011"/>
          <exon e_start="88087" e_stop="88300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTTGTAAGTATAGTGTAATTTTTATGTGATATTTATTTTTAGTATAATGAGTAAGTTCGATAGAATCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCTGTCGTGCATTTAAATAAAACAAGGTTCAAGATTAGAATATAATATTATTAAACTTTCTAATAGTTTAATTAGTACAAAATTAGATCATGACAATTGACACCCCCTCCTATAAGTGTAGTTAAATAGTTAATTAATCAATAGTCGTACGTACGATTTACTTTTTATTGTATATTTTATATCAACCACTACTATATATTAAAATAAAAATAAAATCATCTGATACTTACTGATAGATTTATATATACAATTAATTTTCAGGGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAA-TTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCA</genome_strand>
        <mrna_strand>TTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324318" ref_strand="+" ref_description="SGN-E324318 [cTOC-6-A1]">
      <seq>tcaaatagtagtatcgattcttacgcttgcagtagacatacatataatttatagaatcaaatagtagtatcgaatcttacgcttatagtagacatacatataatttgttggtaatccaaaatcctataaattgtgagttcaaaaattctaaacacgtcaagttaaatatttgaaatgtttataagttgcatatataatattttattcttattaataatcttagagaagcaataatatgatatctaacattataaaccaactaattactcaaggacacttaatactagtagacttttctccatatatattgatttgtctaatcagcaaaatgcttaatcacgtcaaagtactttacatattgcattattggagctaaaaagtcatgaatgacaaagtattatatgatactttcttttttcacctttacttagtttattatattaaaaaaattatttttatttgaacttatcacgtttaaacatcagtaaactatactcgtaccaaattgtttaatttattttaaggtagggtcaaaacaaaattcgacaaaataaaagcaaatagatgaaatacatatattattctatgattagttaatcattcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="86601" stop="87807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86901" g_stop="87507" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E324318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86901" e_stop="87507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCT</genome_strand>
        <mrna_strand>TCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396123" ref_strand="+" ref_description="SGN-E396123 [TUS-19-M15]">
      <seq>cggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaacatgtatagcatctcatcagcgattgctataactctattgaataatccatgctgtcaaatttctaaaactatgcctgaaggacaatgtattccaggaaaatctccatgtctgtttagggctacacattttttttatgataatttccatcccactgaaattggaaataatatagctacgagtagagcttacagagctcttctaccgtctgattcttatccaatggatattcgtcatttggtgagggccaataatgtgtactatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87472" stop="88947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87772" g_stop="88011" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88087" g_stop="88315" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="469" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88407" g_stop="88647" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="710" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E396123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87772" e_stop="88011"/>
          <exon e_start="88087" e_stop="88315"/>
          <exon e_start="88407" e_stop="88647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTGGTAAGTGTTTTTACTAACCTTATAAGCTGGTCAAATAAATAAATTTTAATTGGCTAATCGAAGCGGACTACTGTTTGTTTTCATTTTGCAGCTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGA</genome_strand>
        <mrna_strand>CGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTG...........................................................................................CTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233124" ref_strand="+" ref_description="SGN-E233124 [cLED-6-C15]">
      <seq>ggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87473" stop="88591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87773" g_stop="88011" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88087" g_stop="88291" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="444" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E233124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87773" e_stop="88011"/>
          <exon e_start="88087" e_stop="88291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACA</genome_strand>
        <mrna_strand>GGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244800" ref_strand="+" ref_description="SGN-E244800 [cLED-38-P18]">
      <seq>ggatttacttgggcaaacaattggagaatcataaagtcacaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87473" stop="88583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87773" g_stop="88011" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88087" g_stop="88283" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="436" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E244800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87773" e_stop="88011"/>
          <exon e_start="88087" e_stop="88283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATA</genome_strand>
        <mrna_strand>GGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329020" ref_strand="+" ref_description="SGN-E329020 [cTOC-24-C6]">
      <seq>acaatttctcgtattgctgatttgctaggaaatgcaacttcagccaaaaatcacttaaataaatgtcttttcattgttggaataggcagcaatgactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaacatgtatagcatctcatcagcgattgctataactctattgaataatccatgctgtcaaatttctaaaactatgcctgaaggacaatgtattccaggaaaatctccatgtctgtttagggctacacattttttttatgataatttccatcccactgaaattggaaataatatagctacgagtagagcttacagagctcttctaccgtctgattcttatccaatggatattcgtcatttggtgagggccaataatgtgtactatgatgatcagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87511" stop="88954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87811" g_stop="88011" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88087" g_stop="88315" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="430" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88407" g_stop="88654" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="678" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E329020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87811" e_stop="88011"/>
          <exon e_start="88087" e_stop="88315"/>
          <exon e_start="88407" e_stop="88654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTGGTAAGTGTTTTTACTAACCTTATAAGCTGGTCAAATAAATAAATTTTAATTGGCTAATCGAAGCGGACTACTGTTTGTTTTCATTTTGCAGCTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAA</genome_strand>
        <mrna_strand>ACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTG...........................................................................................CTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266798" ref_strand="+" ref_description="SGN-E266798 [cLEI-7-O4]">
      <seq>gactacatcaataattttctaatgccagatgtataccaatcaagtcatttgtactcaccaagtcagtatgcaacacttctcattcagcagtactcccaacaattaaaggaattgtattcagatggagcaaggaaaatagcactttttggactacctcaaataggttgcattccagatcaattgaaccaacacagcacaattttttgtgtggattcaacaaataaagcagttcaattattcaacaaaaacttaaaagctcttgttgatgatctcaatactaatttcccagatgcaaaattcatatacataaacatgtatagcatctcatcagcgattgctataactctattgaataatccatgctgtcaaatttctaaaactatgcctgaaggacaatgtattccaggaaaatctccatgtctgtttagggctacacattttttttatgataatttccatcccactgaaattggaaataatatagctacgagtagagcttacagagctcttctaccgtctgattcttatccaatggatattcgtcatttggtgagggccaataatgtgtactatgatgatcagtaaaatttcaacgtgttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87604" stop="88972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87904" g_stop="88011" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88087" g_stop="88315" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="337" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88407" g_stop="88672" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="603" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E266798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87904" e_stop="88011"/>
          <exon e_start="88087" e_stop="88315"/>
          <exon e_start="88407" e_stop="88672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAGGTTCGGTGAAAAATATTTTTCTTCGTACGAAACATATTTCTTTAATATATTTTACTAGTTTTGTTTGTACCATAGGAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTGGTAAGTGTTTTTACTAACCTTATAAGCTGGTCAAATAAATAAATTTTAATTGGCTAATCGAAGCGGACTACTGTTTGTTTTCATTTTGCAGCTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACAC</genome_strand>
        <mrna_strand>GACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG...........................................................................GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTG...........................................................................................CTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228699" ref_strand="+" ref_description="SGN-E228699 [cLEL-29-L3](-)">
      <seq>ataaacatgtatagcatctcatcagcgagtgctataactctattgaataatccatgctgtcaaatttctaaaactatgcctgaaggacaatgtattccaggaaaatctccatgtctgtttagggctacacattttttttatgataatttccatccccctgaaattggaaataatatagctacgagtagagcttacagagctcttctaccgtctgattcttatccaatggatattcgtcatttggtgagggccaataatgtgtactatgatgatcagtaaaatttcaacgtgttacacgaatattatttaatgtaataattgtgtatgatgtatgtttcataataagaaaccaaaaaatcttattggatttgtataaaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87985" stop="89052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88285" g_stop="88315" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88407" g_stop="88751" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="376" r_length="345" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="399"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E228699" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88285" e_stop="88315"/>
          <exon e_start="88407" e_stop="88751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACATGTATAGCATCTCATCAGCGATTGGTAAGTGTTTTTACTAACCTTATAAGCTGGTCAAATAAATAAATTTTAATTGGCTAATCGAAGCGGACTACTGTTTGTTTTCATTTTGCAGCTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACACGAATATTATTTAATGTAATAATTGTGTATGATGTATGTTTCATAATAAGAAACCAAAAAATCTTATTGGATTTGAATAA</genome_strand>
        <mrna_strand>ATAAACATGTATAGCATCTCATCAGCGAGTG...........................................................................................CTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCCCTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACACGAATATTATTTAATGTAATAATTGTGTATGATGTATGTTTCATAATAAGAAACCAAAAAATCTTATTGGATTTGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229179" ref_strand="+" ref_description="SGN-E229179 [cLEL-29-L3](-)">
      <seq>gcatctcatcagcgattgctataactctattgaataatccagcctgtcaaatttctaaaactatgcctgaaggacaatgtattccaggaaaatctccatgtctgtttagggctacacattttttttatgataatttccatcccactgaaattggaaataatatagctacgagtagagcttacagagctcttctaccgtctgattcttatccaatggatattcgtcatttggtgagggccaataatgtgtactatgatgatcagtaaaatttcaacgtgttacccgaatattatttaatgtaataattgtgtatgatgtatgtttcataataagaaaccaaaaaatcttattggatttgaataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0016P15-CE9v9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0016P15.1" temp_strand="+" temp_description="C02SLe0016P15.1  AC215446.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0016P15 sequenced_by:kribb upload_account_name:korea">
        <position start="87998" stop="89052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88298" g_stop="88315" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88407" g_stop="88751" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="363" r_length="345" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="386"/>
      <MATCH_line gen_id="C02SLe0016P15.1" gen_strand="+" ref_id="SGN-E229179" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0016P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88298" e_stop="88315"/>
          <exon e_start="88407" e_stop="88751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCATCAGCGATTGGTAAGTGTTTTTACTAACCTTATAAGCTGGTCAAATAAATAAATTTTAATTGGCTAATCGAAGCGGACTACTGTTTGTTTTCATTTTGCAGCTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACACGAATATTATTTAATGTAATAATTGTGTATGATGTATGTTTCATAATAAGAAACCAAAAAATCTTATTGGATTTGAATAA</genome_strand>
        <mrna_strand>GCATCTCATCAGCGATTG...........................................................................................CTATAACTCTATTGAATAATCCAGCCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACCCGAATATTATTTAATGTAATAATTGTGTATGATGTATGTTTCATAATAAGAAACCAAAAAATCTTATTGGATTTGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>64</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="19539" PGL_stop="19745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19539" e_stop="19745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="19539" e_stop="19745" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19539" stop="19745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAATGTGAGGTATTCCATAGACTATACCAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCTTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAATTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  N  V  R  Y  S  I  D  Y  T  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  L  F  E  C  V  V  V  T  L  S  I  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  N  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  M  *  G  I  P  *  T  I  P  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  F  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  V  I  S  I  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  C  E  V  F  H  R  L  Y  Q  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0016P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25721" PGL_stop="28463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25721" e_stop="26299"/>
            <exon e_start="27938" e_stop="28463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25721" e_stop="26299" e_length="579"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26300" i_stop="27937" i_length="1638"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="27938" e_stop="28463" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25721" stop="26299"/>
              <exon start="27938" stop="28218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="26299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25764" stop="26299"/>
              <exon start="27938" stop="28082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25775" stop="26280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25779" stop="26299"/>
              <exon start="27938" stop="28060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25779" stop="26278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25779" stop="26265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25779" stop="26199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25781" stop="26299"/>
              <exon start="27938" stop="28301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26161" stop="26299"/>
              <exon start="27938" stop="28463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAACTCAAACGTCTACTTGATTTCCTTTTTTGGTCCGGCTAACATCTCGACAGTTCTCAACCGGCCGGCTAGTCGGCGACCGTCGTTACCGGCGATGCGGAGAACCGACGTGACTCCCTCAATCTTTCTTCTCTTACTCTTCTTCCTTCTTCTCTCTAAGCCATCACCTTGTTCCTCCTTTTCTTTCCCATTTTCCAACTACCAAGCCGTCTTCTCTCTTTCTCACTCGCTATTCTCCCGCGTCGCTAATCTCCGGCAAGCTCGCGGAGACTATGATGGCGCTGCCCGAGCTCGATCCATTGCTAAAAAACTAGAGAATGGTATGGGTATTGGTTTCTGGAAAGTCATGTGGAACGTGGGTTGGGATTATGCTCGAAATTATGCTTGGAGAGATGCTACGTCATTTGAAATATTCGGTGCTTTCTCTGATCTGAATGAAATTCTGCGTGGTCTTAGCGACTTTTCAAGTGTCAGTTCAGATAGGGAAAGGGTTAACTGGATGAATCGAAATTATGAAAATCTTTTCAGAGTTTCGAAATCTCTCTTCGGTAAATTTCGGAAGGTGTTTCGACAACCA : GGTCCGCTGAAGGAAGTCATGGAGACACTTCAGAAGGAAGTATTAGAAGGTGATTTGCTTAAGGACTGCCTTGAATTGGGTTCTACTGATTTGAAGGGCCTGCTCACAGTTTTGAAGGATATTTCTTCAAAATATACCTCTACTTTCTCAACGCGAGCAGATCTGTGACTGAGTGAAGTTGAAACCAAGGTATTATGGTTAACTCTGTAACAAGTTTTGTTGCTCTACAGTACAGTACTAACAGAGGTGTAAAAGCTCAATGTAGAAGAAGCTGAATTTTTTGTTTCCAGGCTTGTGTACTTTAAGTGACTTGTTGATCAACGGTCTAAAAATGGACAAGCCTATTAATTAGTTTGACTTTGGAAGGTTATAAACATGTATACCTAGCATGTGCTTTATCATAATGAGAGTTTTTTTTTTTTAATGTTGGATCTTGGGTGTACTCTTATTTTGACATTTTTCATGGTTGAAAAATTATTTATTATAAAGACAATGCATTTATTAAGTTATTAACGCCATGAAAGGA</gDNA_template>
            <first_frame> G  N  S  N  V  Y  L  I  S  F  F  G  P  A  N  I  S  T  V  L  N  R  P  A  S  R  R  P  S  L  P  A  M  R  R  T  D  V  T  P  S  I  F  L  L  L  L  F  F  L  L  L  S  K  P  S  P  C  S  S  F  S  F  P  F  S  N  Y  Q  A  V  F  S  L  S  H  S  L  F  S  R  V  A  N  L  R  Q  A  R  G  D  Y  D  G  A  A  R  A  R  S  I  A  K  K  L  E  N  G  M  G  I  G  F  W  K  V  M  W  N  V  G  W  D  Y  A  R  N  Y  A  W  R  D  A  T  S  F  E  I  F  G  A  F  S  D  L  N  E  I  L  R  G  L  S  D  F  S  S  V  S  S  D  R  E  R  V  N  W  M  N  R  N  Y  E  N  L  F  R  V  S  K  S  L  F  G  K  F  R  K  V  F  R  Q  P  :  G  P  L  K  E  V  M  E  T  L  Q  K  E  V  L  E  G  D  L  L  K  D  C  L  E  L  G  S  T  D  L  K  G  L  L  T  V  L  K  D  I  S  S  K  Y  T  S  T  F  S  T  R  A  D  L  *  L  S  E  V  E  T  K  V  L  W  L  T  L  *  Q  V  L  L  L  Y  S  T  V  L  T  E  V  *  K  L  N  V  E  E  A  E  F  F  V  S  R  L  V  Y  F  K  *  L  V  D  Q  R  S  K  N  G  Q  A  Y  *  L  V  *  L  W  K  V  I  N  M  Y  T  *  H  V  L  Y  H  N  E  S  F  F  F  L  M  L  D  L  G  C  T  L  I  L  T  F  F  M  V  E  K  L  F  I  I  K  T  M  H  L  L  S  Y  *  R  H  E  R  </first_frame>
            <second_frame>  E  T  Q  T  S  T  *  F  P  F  L  V  R  L  T  S  R  Q  F  S  T  G  R  L  V  G  D  R  R  Y  R  R  C  G  E  P  T  *  L  P  Q  S  F  F  S  Y  S  S  S  F  F  S  L  S  H  H  L  V  P  P  F  L  S  H  F  P  T  T  K  P  S  S  L  F  L  T  R  Y  S  P  A  S  L  I  S  G  K  L  A  E  T  M  M  A  L  P  E  L  D  P  L  L  K  N  *  R  M  V  W  V  L  V  S  G  K  S  C  G  T  W  V  G  I  M  L  E  I  M  L  G  E  M  L  R  H  L  K  Y  S  V  L  S  L  I  *  M  K  F  C  V  V  L  A  T  F  Q  V  S  V  Q  I  G  K  G  L  T  G  *  I  E  I  M  K  I  F  S  E  F  R  N  L  S  S  V  N  F  G  R  C  F  D  N  Q :   V  R  *  R  K  S  W  R  H  F  R  R  K  Y  *  K  V  I  C  L  R  T  A  L  N  W  V  L  L  I  *  R  A  C  S  Q  F  *  R  I  F  L  Q  N  I  P  L  L  S  Q  R  E  Q  I  C  D  *  V  K  L  K  P  R  Y  Y  G  *  L  C  N  K  F  C  C  S  T  V  Q  Y  *  Q  R  C  K  S  S  M  *  K  K  L  N  F  L  F  P  G  L  C  T  L  S  D  L  L  I  N  G  L  K  M  D  K  P  I  N  *  F  D  F  G  R  L  *  T  C  I  P  S  M  C  F  I  I  M  R  V  F  F  F  *  C  W  I  L  G  V  L  L  F  *  H  F  S  W  L  K  N  Y  L  L  *  R  Q  C  I  Y  *  V  I  N  A  M  K  G </second_frame>
            <third_frame>   K  L  K  R  L  L  D  F  L  F  W  S  G  *  H  L  D  S  S  Q  P  A  G  *  S  A  T  V  V  T  G  D  A  E  N  R  R  D  S  L  N  L  S  S  L  T  L  L  P  S  S  L  *  A  I  T  L  F  L  L  F  F  P  I  F  Q  L  P  S  R  L  L  S  F  S  L  A  I  L  P  R  R  *  S  P  A  S  S  R  R  L  *  W  R  C  P  S  S  I  H  C  *  K  T  R  E  W  Y  G  Y  W  F  L  E  S  H  V  E  R  G  L  G  L  C  S  K  L  C  L  E  R  C  Y  V  I  *  N  I  R  C  F  L  *  S  E  *  N  S  A  W  S  *  R  L  F  K  C  Q  F  R  *  G  K  G  *  L  D  E  S  K  L  *  K  S  F  Q  S  F  E  I  S  L  R  *  I  S  E  G  V  S  T  T   : R  S  A  E  G  S  H  G  D  T  S  E  G  S  I  R  R  *  F  A  *  G  L  P  *  I  G  F  Y  *  F  E  G  P  A  H  S  F  E  G  Y  F  F  K  I  Y  L  Y  F  L  N  A  S  R  S  V  T  E  *  S  *  N  Q  G  I  M  V  N  S  V  T  S  F  V  A  L  Q  Y  S  T  N  R  G  V  K  A  Q  C  R  R  S  *  I  F  C  F  Q  A  C  V  L  *  V  T  C  *  S  T  V  *  K  W  T  S  L  L  I  S  L  T  L  E  G  Y  K  H  V  Y  L  A  C  A  L  S  *  *  E  F  F  F  F  N  V  G  S  W  V  Y  S  Y  F  D  I  F  H  G  *  K  I  I  Y  Y  K  D  N  A  F  I  K  L  L  T  P  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25721" stop="26299"/>
                    <exon start="27938" stop="28105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNSNVYLISFFGPANISTVLNRPASRRPSLPAMRRTDVTPSIFLLLLFFLLLSKPSPCSSFSFPFSNYQAVFSLSHSLFSRVANLRQARGDYDGAARARSIAKKLENGMGIGFWKVMWNVGWDYARNYAWRDATSFEIFGAFSDLNEILRGLSDFSSVSSDRERVNWMNRNYENLFRVSKSLFGKFRKVFRQPGPLKEVMETLQKEVLEGDLLKDCLELGSTDLKGLLTVLKDISSKYTSTFSTRADL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30542" PGL_stop="32989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30542" e_stop="30985"/>
            <exon e_start="31672" e_stop="31796"/>
            <exon e_start="31923" e_stop="32168"/>
            <exon e_start="32288" e_stop="32543"/>
            <exon e_start="32638" e_stop="32989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30542" e_stop="30985" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31672" e_stop="31796" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31923" e_stop="32168" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.886">
            <gDNA_intron_boundary i_start="32169" i_stop="32287" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32288" e_stop="32543" e_length="256"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32638" e_stop="32989" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30542" stop="30863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30660" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32168"/>
              <exon start="32288" stop="32543"/>
              <exon start="32638" stop="32977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30664" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32168"/>
              <exon start="32288" stop="32321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30668" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30677" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30678" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30680" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32168"/>
              <exon start="32288" stop="32358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30680" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="31976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30680" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="31936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30687" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30690" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32168"/>
              <exon start="32288" stop="32361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30719" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30723" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32168"/>
              <exon start="32288" stop="32301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31789" stop="31796"/>
              <exon start="31923" stop="32168"/>
              <exon start="32288" stop="32543"/>
              <exon start="32638" stop="32835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32010" stop="32168"/>
              <exon start="32288" stop="32543"/>
              <exon start="32638" stop="32989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32452" stop="32543"/>
              <exon start="32638" stop="32979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32495" stop="32543"/>
              <exon start="32638" stop="32979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTTCTCATCAATGAATTGAAGTCTTCGTCACACTCTCTAAAATGACTAGCTCATTAACCTCAAAACACATAATATAGTATACTATATAATTAGACAATTGTTTGAAACTTTTCTTCAAGCTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG : CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG : GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAG : ACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG : GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTACTATGACATGTG</gDNA_template>
            <first_frame> *  L  L  I  N  E  L  K  S  S  S  H  S  L  K  *  L  A  H  *  P  Q  N  T  *  Y  S  I  L  Y  N  *  T  I  V  *  N  F  S  S  S  Y  S  I  F  H  *  Y  T  I  H  F  F  S  S  P  L  A  S  F  C  L  M  K  W  V  L  G  K  *  R  G  D  G  *  W  C  M  *  W  *  F  *  D  *  I  W  G  *  M  *  M  H  N  K  C  L  V  I  L  Y  L  V  I  H  *  W  I  M  G  I  T  T  I  F  S  H  W  L  G  L  I  T  C  L  M  V  L  I  I  L  M  V  Q  L  E  G  F  P  M  E  K  Q  L  L  M  S  L  :  L  S  F  W  G  S  M  I  I  F  H  P  M  H  L  Q  G  V  K  T  F  S  K  V  L  I  L  H  L  L  L  L  E  L  E  K  K  L  V  N  N  W :   E  Q  G  L  R  L  V  V  R  *  I  I  T  G  T  Q  C  N  K  W  C  K  Y  L  E  M  K  I  L  L  L  I  I  *  A  N  A  F  T  Q  L  D  *  A  A  M  I  I  S  I  I  I  S  C  L  N  I  T  P  L  A  D  N  L  I  L  I  N  M  L  M  F  *  F  N  N  T  L  N  N  *  R :   L  C  M  T  M  E  Q  G  S  L  S  *  L  E  W  A  K  L  V  V  A  Q  M  L  *  P  K  T  V  L  M  E  E  P  V  Q  K  I  *  I  M  Q  T  S  C  S  T  I  G  *  R  V  L  W  M  N  S  M  A  I  H  Q  M  Q  N  S  S  T  S  M  L  M  I  S  S  K  I  *  L  T  I  P  Q  H  L  :  D  L  E  *  R  M  L  D  V  V  E  *  E  G  I  T  G  K  *  H  V  F  H  Y  K  I  L  A  K  I  E  M  N  M  Y  F  G  M  H  F  I  Q  V  K  L  Q  I  *  L  L  G  E  D  H  I  E  L  K  D  H  Q  M  L  I  L  L  I  F  S  V  *  L  N  Y  E  D  K  R  *  S  *  K  Y  I  Y  F  C  G  I  C  I  I  V  F  Y  D  V  L  *  V  D  N  N  *  F  Y  Y  L  R  N  V  M  V  T  M  T  C  </first_frame>
            <second_frame>  N  F  S  S  M  N  *  S  L  R  H  T  L  *  N  D  *  L  I  N  L  K  T  H  N  I  V  Y  Y  I  I  R  Q  L  F  E  T  F  L  Q  A  T  Q  F  S  T  S  I  L  Y  I  F  F  L  P  P  *  L  L  F  V  *  *  N  G  C  W  G  S  K  E  E  M  D  S  G  V  C  S  G  S  F  R  I  E  F  G  G  K  C  K  C  T  T  S  A  L  L  F  Y  I  W  *  F  I  S  G  *  W  E  *  Q  Q  Y  S  V  I  G  *  G  *  L  L  A  L  W  Y  *  L  S  *  W  S  N  W  K  V  F  Q  W  K  N  N  C  *  C  H  C :   *  A  F  G  V  R  *  L  Y  S  T  L  C  I  C  K  G  *  R  H  S  Q  R  C  *  F  C  I  C  C  C  W  N  *  R  R  N  W  S  T  I   : G  S  K  D  Y  V  W  W  S  G  K  *  L  Q  E  H  S  A  T  S  G  A  N  T  W  R  *  K  F  C  C  *  L  F  E  Q  M  H  L  L  N  W  I  R  Q  Q  *  L  S  Q  *  L  F  H  A  S  I  L  L  H  *  Q  T  I  *  S  *  S  I  C  *  C  S  N  S  T  I  L  S  T  T  K   : D  F  V  *  L  W  S  K  E  V  C  L  N  W  S  G  P  N  W  L  *  P  K  C  S  S  P  K  Q  S  *  W  K  N  L  C  R  K  Y  K  *  C  K  Q  V  V  Q  Q  *  A  K  G  Y  C  G  *  I  Q  W  Q  Y  T  R  C  K  I  H  L  H  Q  C  L  *  Y  L  P  R  F  N  *  Q  S  L  S  I  W :   I  *  S  N  E  C  W  M  L  W  S  R  K  E  *  R  A  N  N  M  S  S  T  T  K  S  L  P  K  *  R  *  I  C  I  L  G  C  I  S  S  R  *  S  C  K  Y  S  C  W  E  K  I  I  *  S  *  K  I  I  R  C  L  S  F  *  Y  S  A  F  S  S  T  M  K  I  R  D  E  A  K  N  I  Y  I  F  V  E  F  V  L  L  C  S  M  M  Y  Y  E  L  I  I  I  N  F  I  I  *  E  M  L  W  L  L  *  H  V </second_frame>
            <third_frame>   T  S  H  Q  *  I  E  V  F  V  T  L  S  K  M  T  S  S  L  T  S  K  H  I  I  *  Y  T  I  *  L  D  N  C  L  K  L  F  F  K  L  L  N  F  P  L  V  Y  Y  T  F  F  F  F  P  L  S  F  F  L  F  D  E  M  G  A  G  E  V  K  R  R  W  I  V  V  Y  V  V  V  V  L  G  L  N  L  G  V  N  V  N  A  Q  Q  V  P  C  Y  F  I  F  G  D  S  L  V  D  N  G  N  N  N  N  I  Q  S  L  A  R  A  N  Y  L  P  Y  G  I  D  Y  P  D  G  P  T  G  R  F  S  N  G  K  T  T  V  D  V  I   : A  E  L  L  G  F  D  D  Y  I  P  P  Y  A  S  A  R  G  E  D  I  L  K  G  V  N  F  A  S  A  A  A  G  I  R  E  E  T  G  Q  Q  L  :  G  A  R  I  T  F  G  G  Q  V  N  N  Y  R  N  T  V  Q  Q  V  V  Q  I  L  G  D  E  N  S  A  A  N  Y  L  S  K  C  I  Y  S  I  G  L  G  S  N  D  Y  L  N  N  Y  F  M  P  Q  Y  Y  S  T  S  R  Q  F  N  P  D  Q  Y  A  D  V  L  I  Q  Q  Y  S  Q  Q  L  K  :  T  L  Y  D  Y  G  A  R  K  F  V  L  I  G  V  G  Q  I  G  C  S  P  N  A  L  A  Q  N  S  P  D  G  R  T  C  A  E  N  I  N  N  A  N  K  L  F  N  N  R  L  K  G  I  V  D  E  F  N  G  N  T  P  D  A  K  F  I  Y  I  N  A  Y  D  I  F  Q  D  L  I  D  N  P  S  A  F   : G  F  R  V  T  N  A  G  C  C  G  V  G  R  N  N  G  Q  I  T  C  L  P  L  Q  N  P  C  Q  N  R  D  E  Y  V  F  W  D  A  F  H  P  G  E  A  A  N  I  V  V  G  R  R  S  Y  R  A  E  R  S  S  D  A  Y  P  F  D  I  Q  R  L  A  Q  L  *  R  *  E  M  K  L  K  I  Y  I  F  L  W  N  L  Y  Y  C  V  L  *  C  I  M  S  *  *  *  L  I  L  L  F  E  K  C  Y  G  Y  Y  D  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30634" stop="30985"/>
                    <exon start="31672" stop="31796"/>
                    <exon start="31923" stop="32168"/>
                    <exon start="32288" stop="32543"/>
                    <exon start="32638" stop="32861"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDNCLKLFFKLLNFPLVYYTFFFFPLSFFLFDEMGAGEVKRRWIVVYVVVVLGLNLGVNVNAQQVPCYFIFGDSLVDNGNNNNIQSLARANYLPYGIDYPDGPTGRFSNGKTTVDVIAELLGFDDYIPPYASARGEDILKGVNFASAAAGIREETGQQLGARITFGGQVNNYRNTVQQVVQILGDENSAANYLSKCIYSIGLGSNDYLNNYFMPQYYSTSRQFNPDQYADVLIQQYSQQLKTLYDYGARKFVLIGVGQIGCSPNALAQNSPDGRTCAENINNANKLFNNRLKGIVDEFNGNTPDAKFIYINAYDIFQDLIDNPSAFGFRVTNAGCCGVGRNNGQITCLPLQNPCQNRDEYVFWDAFHPGEAANIVVGRRSYRAERSSDAYPFDIQRLAQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30542" e_stop="30985"/>
            <exon e_start="31672" e_stop="31796"/>
            <exon e_start="31923" e_stop="32543"/>
            <exon e_start="32638" e_stop="32979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30542" e_stop="30985" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30986" i_stop="31671" i_length="686"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31672" e_stop="31796" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31797" i_stop="31922" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31923" e_stop="32543" e_length="621"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32544" i_stop="32637" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="32638" e_stop="32979" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30542" stop="30863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30668" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30677" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30678" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30680" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="31976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30680" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="31936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30683" stop="30935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30687" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30719" stop="30985"/>
              <exon start="31672" stop="31796"/>
              <exon start="31923" stop="32050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31944" stop="32543"/>
              <exon start="32638" stop="32724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32452" stop="32543"/>
              <exon start="32638" stop="32979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32495" stop="32543"/>
              <exon start="32638" stop="32979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTTCTCATCAATGAATTGAAGTCTTCGTCACACTCTCTAAAATGACTAGCTCATTAACCTCAAAACACATAATATAGTATACTATATAATTAGACAATTGTTTGAAACTTTTCTTCAAGCTACTCAATTTTCCACTAGTATACTATACATTTTTTTTCTTCCCCCTTAGCTTCTTTTTGTTTGATGAAATGGGTGCTGGGGAAGTAAAGAGGAGATGGATAGTGGTGTATGTAGTGGTAGTTTTAGGATTGAATTTGGGGGTAAATGTAAATGCACAACAAGTGCCTTGTTATTTTATATTTGGTGATTCATTAGTGGATAATGGGAATAACAACAATATTCAGTCATTGGCTAGGGCTAATTACTTGCCTTATGGTATTGATTATCCTGATGGTCCAACTGGAAGGTTTTCCAATGGAAAAACAACTGTTGATGTCATTG : CTGAGCTTTTGGGGTTCGATGATTATATTCCACCCTATGCATCTGCAAGGGGTGAAGACATTCTCAAAGGTGTTAATTTTGCATCTGCTGCTGCTGGAATTAGAGAAGAAACTGGTCAACAATTG : GGAGCAAGGATTACGTTTGGTGGTCAGGTAAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATACTTGGAGATGAAAATTCTGCTGCTAATTATTTGAGCAAATGCATTTACTCAATTGGATTAGGCAGCAATGATTATCTCAATAATTATTTCATGCCTCAATATTACTCCACTAGCAGACAATTTAATCCTGATCAATATGCTGATGTTCTAATTCAACAATACTCTCAACAACTAAAGGTGAGTTTGAATCACCTGATTAAAAGTAATCGATAAACATATAACATGTTTAAAGTAAAGTACTTGCGTTTTAATATTAGAGATAATATCATAAAAGATCTAATTGGCTTTTACATCAGACTTTGTATGACTATGGAGCAAGGAAGTTTGTCTTAATTGGAGTGGGCCAAATTGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCTGTGCAGAAAATATAAATAATGCAAACAAGTTGTTCAACAATAGGCTAAAGGGTATTGTGGATGAATTCAATGGCAATACACCAGATGCAAAATTCATCTACATCAATGCTTATGATATCTTCCAAGATTTAATTGACAATCCCTCAGCATTTG : GATTTAGAGTAACGAATGCTGGATGTTGTGGAGTAGGAAGGAATAACGGGCAAATAACATGTCTTCCACTACAAAATCCTTGCCAAAATAGAGATGAATATGTATTTTGGGATGCATTTCATCCAGGTGAAGCTGCAAATATAGTTGTTGGGAGAAGATCATATAGAGCTGAAAGATCATCAGATGCTTATCCTTTTGATATTCAGCGTTTAGCTCAACTATGAAGATAAGAGATGAAGCTAAAAATATATATATTTTTGTGGAATTTGTATTATTGTGTTCTATGATGTATTATGAGTTGATAATAATTAATTTTATTATTTGAGAAATGTTATGGTTACT</gDNA_template>
            <first_frame> *  L  L  I  N  E  L  K  S  S  S  H  S  L  K  *  L  A  H  *  P  Q  N  T  *  Y  S  I  L  Y  N  *  T  I  V  *  N  F  S  S  S  Y  S  I  F  H  *  Y  T  I  H  F  F  S  S  P  L  A  S  F  C  L  M  K  W  V  L  G  K  *  R  G  D  G  *  W  C  M  *  W  *  F  *  D  *  I  W  G  *  M  *  M  H  N  K  C  L  V  I  L  Y  L  V  I  H  *  W  I  M  G  I  T  T  I  F  S  H  W  L  G  L  I  T  C  L  M  V  L  I  I  L  M  V  Q  L  E  G  F  P  M  E  K  Q  L  L  M  S  L  :  L  S  F  W  G  S  M  I  I  F  H  P  M  H  L  Q  G  V  K  T  F  S  K  V  L  I  L  H  L  L  L  L  E  L  E  K  K  L  V  N  N  W :   E  Q  G  L  R  L  V  V  R  *  I  I  T  G  T  Q  C  N  K  W  C  K  Y  L  E  M  K  I  L  L  L  I  I  *  A  N  A  F  T  Q  L  D  *  A  A  M  I  I  S  I  I  I  S  C  L  N  I  T  P  L  A  D  N  L  I  L  I  N  M  L  M  F  *  F  N  N  T  L  N  N  *  R  *  V  *  I  T  *  L  K  V  I  D  K  H  I  T  C  L  K  *  S  T  C  V  L  I  L  E  I  I  S  *  K  I  *  L  A  F  T  S  D  F  V  *  L  W  S  K  E  V  C  L  N  W  S  G  P  N  W  L  *  P  K  C  S  S  P  K  Q  S  *  W  K  N  L  C  R  K  Y  K  *  C  K  Q  V  V  Q  Q  *  A  K  G  Y  C  G  *  I  Q  W  Q  Y  T  R  C  K  I  H  L  H  Q  C  L  *  Y  L  P  R  F  N  *  Q  S  L  S  I  W :   I  *  S  N  E  C  W  M  L  W  S  R  K  E  *  R  A  N  N  M  S  S  T  T  K  S  L  P  K  *  R  *  I  C  I  L  G  C  I  S  S  R  *  S  C  K  Y  S  C  W  E  K  I  I  *  S  *  K  I  I  R  C  L  S  F  *  Y  S  A  F  S  S  T  M  K  I  R  D  E  A  K  N  I  Y  I  F  V  E  F  V  L  L  C  S  M  M  Y  Y  E  L  I  I  I  N  F  I  I  *  E  M  L  W  L   </first_frame>
            <second_frame>  N  F  S  S  M  N  *  S  L  R  H  T  L  *  N  D  *  L  I  N  L  K  T  H  N  I  V  Y  Y  I  I  R  Q  L  F  E  T  F  L  Q  A  T  Q  F  S  T  S  I  L  Y  I  F  F  L  P  P  *  L  L  F  V  *  *  N  G  C  W  G  S  K  E  E  M  D  S  G  V  C  S  G  S  F  R  I  E  F  G  G  K  C  K  C  T  T  S  A  L  L  F  Y  I  W  *  F  I  S  G  *  W  E  *  Q  Q  Y  S  V  I  G  *  G  *  L  L  A  L  W  Y  *  L  S  *  W  S  N  W  K  V  F  Q  W  K  N  N  C  *  C  H  C :   *  A  F  G  V  R  *  L  Y  S  T  L  C  I  C  K  G  *  R  H  S  Q  R  C  *  F  C  I  C  C  C  W  N  *  R  R  N  W  S  T  I   : G  S  K  D  Y  V  W  W  S  G  K  *  L  Q  E  H  S  A  T  S  G  A  N  T  W  R  *  K  F  C  C  *  L  F  E  Q  M  H  L  L  N  W  I  R  Q  Q  *  L  S  Q  *  L  F  H  A  S  I  L  L  H  *  Q  T  I  *  S  *  S  I  C  *  C  S  N  S  T  I  L  S  T  T  K  G  E  F  E  S  P  D  *  K  *  S  I  N  I  *  H  V  *  S  K  V  L  A  F  *  Y  *  R  *  Y  H  K  R  S  N  W  L  L  H  Q  T  L  Y  D  Y  G  A  R  K  F  V  L  I  G  V  G  Q  I  G  C  S  P  N  A  L  A  Q  N  S  P  D  G  R  T  C  A  E  N  I  N  N  A  N  K  L  F  N  N  R  L  K  G  I  V  D  E  F  N  G  N  T  P  D  A  K  F  I  Y  I  N  A  Y  D  I  F  Q  D  L  I  D  N  P  S  A  F   : G  F  R  V  T  N  A  G  C  C  G  V  G  R  N  N  G  Q  I  T  C  L  P  L  Q  N  P  C  Q  N  R  D  E  Y  V  F  W  D  A  F  H  P  G  E  A  A  N  I  V  V  G  R  R  S  Y  R  A  E  R  S  S  D  A  Y  P  F  D  I  Q  R  L  A  Q  L  *  R  *  E  M  K  L  K  I  Y  I  F  L  W  N  L  Y  Y  C  V  L  *  C  I  M  S  *  *  *  L  I  L  L  F  E  K  C  Y  G  Y  </second_frame>
            <third_frame>   T  S  H  Q  *  I  E  V  F  V  T  L  S  K  M  T  S  S  L  T  S  K  H  I  I  *  Y  T  I  *  L  D  N  C  L  K  L  F  F  K  L  L  N  F  P  L  V  Y  Y  T  F  F  F  F  P  L  S  F  F  L  F  D  E  M  G  A  G  E  V  K  R  R  W  I  V  V  Y  V  V  V  V  L  G  L  N  L  G  V  N  V  N  A  Q  Q  V  P  C  Y  F  I  F  G  D  S  L  V  D  N  G  N  N  N  N  I  Q  S  L  A  R  A  N  Y  L  P  Y  G  I  D  Y  P  D  G  P  T  G  R  F  S  N  G  K  T  T  V  D  V  I   : A  E  L  L  G  F  D  D  Y  I  P  P  Y  A  S  A  R  G  E  D  I  L  K  G  V  N  F  A  S  A  A  A  G  I  R  E  E  T  G  Q  Q  L  :  G  A  R  I  T  F  G  G  Q  V  N  N  Y  R  N  T  V  Q  Q  V  V  Q  I  L  G  D  E  N  S  A  A  N  Y  L  S  K  C  I  Y  S  I  G  L  G  S  N  D  Y  L  N  N  Y  F  M  P  Q  Y  Y  S  T  S  R  Q  F  N  P  D  Q  Y  A  D  V  L  I  Q  Q  Y  S  Q  Q  L  K  V  S  L  N  H  L  I  K  S  N  R  *  T  Y  N  M  F  K  V  K  Y  L  R  F  N  I  R  D  N  I  I  K  D  L  I  G  F  Y  I  R  L  C  M  T  M  E  Q  G  S  L  S  *  L  E  W  A  K  L  V  V  A  Q  M  L  *  P  K  T  V  L  M  E  E  P  V  Q  K  I  *  I  M  Q  T  S  C  S  T  I  G  *  R  V  L  W  M  N  S  M  A  I  H  Q  M  Q  N  S  S  T  S  M  L  M  I  S  S  K  I  *  L  T  I  P  Q  H  L  :  D  L  E  *  R  M  L  D  V  V  E  *  E  G  I  T  G  K  *  H  V  F  H  Y  K  I  L  A  K  I  E  M  N  M  Y  F  G  M  H  F  I  Q  V  K  L  Q  I  *  L  L  G  E  D  H  I  E  L  K  D  H  Q  M  L  I  L  L  I  F  S  V  *  L  N  Y  E  D  K  R  *  S  *  K  Y  I  Y  F  C  G  I  C  I  I  V  F  Y  D  V  L  *  V  D  N  N  *  F  Y  Y  L  R  N  V  M  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30634" stop="30985"/>
                    <exon start="31672" stop="31796"/>
                    <exon start="31923" stop="32204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDNCLKLFFKLLNFPLVYYTFFFFPLSFFLFDEMGAGEVKRRWIVVYVVVVLGLNLGVNVNAQQVPCYFIFGDSLVDNGNNNNIQSLARANYLPYGIDYPDGPTGRFSNGKTTVDVIAELLGFDDYIPPYASARGEDILKGVNFASAAAGIREETGQQLGARITFGGQVNNYRNTVQQVVQILGDENSAANYLSKCIYSIGLGSNDYLNNYFMPQYYSTSRQFNPDQYADVLIQQYSQQLKVSLNHLIKSNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32255" stop="32543"/>
                    <exon start="32638" stop="32861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHKRSNWLLHQTLYDYGARKFVLIGVGQIGCSPNALAQNSPDGRTCAENINNANKLFNNRLKGIVDEFNGNTPDAKFIYINAYDIFQDLIDNPSAFGFRVTNAGCCGVGRNNGQITCLPLQNPCQNRDEYVFWDAFHPGEAANIVVGRRSYRAERSSDAYPFDIQRLAQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36420" PGL_stop="38590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36420" e_stop="36733"/>
            <exon e_start="37286" e_stop="37410"/>
            <exon e_start="37503" e_stop="37748"/>
            <exon e_start="37859" e_stop="38114"/>
            <exon e_start="38203" e_stop="38590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36420" e_stop="36733" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36734" i_stop="37285" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37286" e_stop="37410" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37411" i_stop="37502" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37503" e_stop="37748" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.850">
            <gDNA_intron_boundary i_start="37749" i_stop="37858" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37859" e_stop="38114" e_length="256"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38115" i_stop="38202" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="38203" e_stop="38590" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36420" stop="36733"/>
              <exon start="37286" stop="37410"/>
              <exon start="37503" stop="37748"/>
              <exon start="37859" stop="38114"/>
              <exon start="38203" stop="38499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36448" stop="36733"/>
              <exon start="37286" stop="37410"/>
              <exon start="37503" stop="37552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36696" stop="36733"/>
              <exon start="37286" stop="37410"/>
              <exon start="37503" stop="37748"/>
              <exon start="37859" stop="37902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37286" stop="37410"/>
              <exon start="37503" stop="37677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37730" stop="37748"/>
              <exon start="37859" stop="38114"/>
              <exon start="38203" stop="38341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37730" stop="37748"/>
              <exon start="37859" stop="38078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37944" stop="38114"/>
              <exon start="38203" stop="38486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250859" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38087" stop="38114"/>
              <exon start="38203" stop="38590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38286" stop="38508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCCACTACTCATTACTTTAACTAACTACTTAGCCTAGCTACTTCTAAAGCTAAGGGTCTCAAAAATGGGTAGTGAGATGAGGAGATGTATATTGGTGGTGCTTTTAGGGTTTATGAGTTTGGGAGATTATTATGAAACAAATGCACAACAAGTGCCTTGTTATTTCATATTTGGTGATTCTTTGGTTGATAATGGGAATAACAACAATATTCAGTCATTGGCTAAGGCTAACTACTTGCCTTATGGTATTGATTTCTCTGGAGGTCCAACTGGGAGATTCTCTAATGGAAAAACTACTGTTGATGTCATTG : CGGAACAATTGGGGTTCAATGGTAATATTCCACCCTATGCAACTGCTAGGGGCAGAGATGTTCTCAGAGGTGTCAATTATGCTTCTGCAGCTGCTGGAATTAGAGATGAAACTGGCAGACAATTG : GGAGGAAGAATTAGTTTTTCTGGACAAGTGAATAATTACAGGAACACAGTGCAACAAGTGGTGCAAATATTAGGAAATGAAAATGCAGCTGCTGATTATCTTAAAAAATGCATTTACTCAGTTGGATTAGGCAGCAATGATTATCTCAATAATTATTTTATGCCTCTTTATTATCCCACCAGCAGACAGTTCACTCCTGATCAATATGCTACTGTTCTTATTCAACAATATACTCAACAACTAAAG : ATTTTATATAGTAATGGAGCAAGGAAGTTTGCTTTGATTGGAGTGGGCCAGATAGGGTGCAGCCCAAATGCATTGGCCCAAAACAGCCCAGATGGGAGAACTTGTGTACAAAGAATCAATGTAGCAAATCAATTATTCAACAATAAACTCAAGGCACTTGTTGATAATTTGAATGGAAATACACCTGATGCAAAATTCATCTACATTGATGCTTATGGAATCTTCCAAGACTTAATTGAAAATCCTGCTGCCTTTG : GATTTAGAGTGACAAATGCCGGATGTTGTGGGGTAGGGAGGAACAACGGACAAATTACGTGTCTTCCTTTCCAAAGGCCATGCAGAAATAGGAATGAATATCTATTTTGGGATGCATTTCATCCAACTGAAGCTGCAAATATAGTTGTCGGGAGGAGATCATATAGAGCTCAAAAATCATCTGATGCATATCCTTATGATATTAGTCGTCTAGCTCAAGCTTGATTAAATATCAAATACTCTATATATTAATTATTGTGGAATTGACATCTTTAATTACTATAAGATGTAATCACAAGTGTTTAATATGTTTTTAGTGCTTTTTGCTTTGTTTTAATCATAATATGTTAGTATTTTAAGTCCCCACTTTTTAATGAAGAATTTTTTTT</gDNA_template>
            <first_frame> H  P  T  T  H  Y  F  N  *  L  L  S  L  A  T  S  K  A  K  G  L  K  N  G  *  *  D  E  E  M  Y  I  G  G  A  F  R  V  Y  E  F  G  R  L  L  *  N  K  C  T  T  S  A  L  L  F  H  I  W  *  F  F  G  *  *  W  E  *  Q  Q  Y  S  V  I  G  *  G  *  L  L  A  L  W  Y  *  F  L  W  R  S  N  W  E  I  L  *  W  K  N  Y  C  *  C  H  C :   G  T  I  G  V  Q  W  *  Y  S  T  L  C  N  C  *  G  Q  R  C  S  Q  R  C  Q  L  C  F  C  S  C  W  N  *  R  *  N  W  Q  T  I   : G  R  K  N  *  F  F  W  T  S  E  *  L  Q  E  H  S  A  T  S  G  A  N  I  R  K  *  K  C  S  C  *  L  S  *  K  M  H  L  L  S  W  I  R  Q  Q  *  L  S  Q  *  L  F  Y  A  S  L  L  S  H  Q  Q  T  V  H  S  *  S  I  C  Y  C  S  Y  S  T  I  Y  S  T  T  K   : D  F  I  *  *  W  S  K  E  V  C  F  D  W  S  G  P  D  R  V  Q  P  K  C  I  G  P  K  Q  P  R  W  E  N  L  C  T  K  N  Q  C  S  K  S  I  I  Q  Q  *  T  Q  G  T  C  *  *  F  E  W  K  Y  T  *  C  K  I  H  L  H  *  C  L  W  N  L  P  R  L  N  *  K  S  C  C  L  W :   I  *  S  D  K  C  R  M  L  W  G  R  E  E  Q  R  T  N  Y  V  S  S  F  P  K  A  M  Q  K  *  E  *  I  S  I  L  G  C  I  S  S  N  *  S  C  K  Y  S  C  R  E  E  I  I  *  S  S  K  I  I  *  C  I  S  L  *  Y  *  S  S  S  S  S  L  I  K  Y  Q  I  L  Y  I  L  I  I  V  E  L  T  S  L  I  T  I  R  C  N  H  K  C  L  I  C  F  *  C  F  L  L  C  F  N  H  N  M  L  V  F  *  V  P  T  F  *  *  R  I  F  F </first_frame>
            <second_frame>  I  P  L  L  I  T  L  T  N  Y  L  A  *  L  L  L  K  L  R  V  S  K  M  G  S  E  M  R  R  C  I  L  V  V  L  L  G  F  M  S  L  G  D  Y  Y  E  T  N  A  Q  Q  V  P  C  Y  F  I  F  G  D  S  L  V  D  N  G  N  N  N  N  I  Q  S  L  A  K  A  N  Y  L  P  Y  G  I  D  F  S  G  G  P  T  G  R  F  S  N  G  K  T  T  V  D  V  I   : A  E  Q  L  G  F  N  G  N  I  P  P  Y  A  T  A  R  G  R  D  V  L  R  G  V  N  Y  A  S  A  A  A  G  I  R  D  E  T  G  R  Q  L  :  G  G  R  I  S  F  S  G  Q  V  N  N  Y  R  N  T  V  Q  Q  V  V  Q  I  L  G  N  E  N  A  A  A  D  Y  L  K  K  C  I  Y  S  V  G  L  G  S  N  D  Y  L  N  N  Y  F  M  P  L  Y  Y  P  T  S  R  Q  F  T  P  D  Q  Y  A  T  V  L  I  Q  Q  Y  T  Q  Q  L  K  :  I  L  Y  S  N  G  A  R  K  F  A  L  I  G  V  G  Q  I  G  C  S  P  N  A  L  A  Q  N  S  P  D  G  R  T  C  V  Q  R  I  N  V  A  N  Q  L  F  N  N  K  L  K  A  L  V  D  N  L  N  G  N  T  P  D  A  K  F  I  Y  I  D  A  Y  G  I  F  Q  D  L  I  E  N  P  A  A  F   : G  F  R  V  T  N  A  G  C  C  G  V  G  R  N  N  G  Q  I  T  C  L  P  F  Q  R  P  C  R  N  R  N  E  Y  L  F  W  D  A  F  H  P  T  E  A  A  N  I  V  V  G  R  R  S  Y  R  A  Q  K  S  S  D  A  Y  P  Y  D  I  S  R  L  A  Q  A  *  L  N  I  K  Y  S  I  Y  *  L  L  W  N  *  H  L  *  L  L  *  D  V  I  T  S  V  *  Y  V  F  S  A  F  C  F  V  L  I  I  I  C  *  Y  F  K  S  P  L  F  N  E  E  F  F   </second_frame>
            <third_frame>   S  H  Y  S  L  L  *  L  T  T  *  P  S  Y  F  *  S  *  G  S  Q  K  W  V  V  R  *  G  D  V  Y  W  W  C  F  *  G  L  *  V  W  E  I  I  M  K  Q  M  H  N  K  C  L  V  I  S  Y  L  V  I  L  W  L  I  M  G  I  T  T  I  F  S  H  W  L  R  L  T  T  C  L  M  V  L  I  S  L  E  V  Q  L  G  D  S  L  M  E  K  L  L  L  M  S  L  :  R  N  N  W  G  S  M  V  I  F  H  P  M  Q  L  L  G  A  E  M  F  S  E  V  S  I  M  L  L  Q  L  L  E  L  E  M  K  L  A  D  N  W :   E  E  E  L  V  F  L  D  K  *  I  I  T  G  T  Q  C  N  K  W  C  K  Y  *  E  M  K  M  Q  L  L  I  I  L  K  N  A  F  T  Q  L  D  *  A  A  M  I  I  S  I  I  I  L  C  L  F  I  I  P  P  A  D  S  S  L  L  I  N  M  L  L  F  L  F  N  N  I  L  N  N  *  R :   F  Y  I  V  M  E  Q  G  S  L  L  *  L  E  W  A  R  *  G  A  A  Q  M  H  W  P  K  T  A  Q  M  G  E  L  V  Y  K  E  S  M  *  Q  I  N  Y  S  T  I  N  S  R  H  L  L  I  I  *  M  E  I  H  L  M  Q  N  S  S  T  L  M  L  M  E  S  S  K  T  *  L  K  I  L  L  P  L  :  D  L  E  *  Q  M  P  D  V  V  G  *  G  G  T  T  D  K  L  R  V  F  L  S  K  G  H  A  E  I  G  M  N  I  Y  F  G  M  H  F  I  Q  L  K  L  Q  I  *  L  S  G  G  D  H  I  E  L  K  N  H  L  M  H  I  L  M  I  L  V  V  *  L  K  L  D  *  I  S  N  T  L  Y  I  N  Y  C  G  I  D  I  F  N  Y  Y  K  M  *  S  Q  V  F  N  M  F  L  V  L  F  A  L  F  *  S  *  Y  V  S  I  L  S  P  H  F  L  M  K  N  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36460" stop="36733"/>
                    <exon start="37286" stop="37410"/>
                    <exon start="37503" stop="37748"/>
                    <exon start="37859" stop="38114"/>
                    <exon start="38203" stop="38426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLKLRVSKMGSEMRRCILVVLLGFMSLGDYYETNAQQVPCYFIFGDSLVDNGNNNNIQSLAKANYLPYGIDFSGGPTGRFSNGKTTVDVIAEQLGFNGNIPPYATARGRDVLRGVNYASAAAGIRDETGRQLGGRISFSGQVNNYRNTVQQVVQILGNENAAADYLKKCIYSVGLGSNDYLNNYFMPLYYPTSRQFTPDQYATVLIQQYTQQLKILYSNGARKFALIGVGQIGCSPNALAQNSPDGRTCVQRINVANQLFNNKLKALVDNLNGNTPDAKFIYIDAYGIFQDLIENPAAFGFRVTNAGCCGVGRNNGQITCLPFQRPCRNRNEYLFWDAFHPTEAANIVVGRRSYRAQKSSDAYPYDISRLAQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="69930" PGL_stop="70588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69930" e_stop="70588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69930" e_stop="70588" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="70588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTGCTAAAATCAACTCAGGCAATAACAAAATCATTCTTCCATGCACAACTCTAGAAACCACTTTGTTAATGAAGTTGCTAAGGCTGATGGGTCTGACATTATTGAAGGTCTAGATGTTATCTTTCTTAGGTATCAGAACCGGATTTGTATGAGTAACAACTAACAAATCTGGGTGGTTCCTGTCCCCCCATAAAAGCATGCACAACTATGGTATCCTCCTTAATAATTTCCCAAGCCGATTGACAAAAAAGACCCGTAAAACCATCTGGTTCACTAGAACTTTCTCCACTTGGATCAAAAACTGCTGCTTTAACTTCTGCCTCATCAGGTGCTCTATTCTGTTCTCATTCTGTTCTGCATTGATCAACTTTGGAATGTTTTCTAATAGTTCAAAGTCCTCAGGGAAACTATCCTCCGTGAATTGATTTTGAAAAAACTTTACTGCTTCATTGGCCACCTCTGTCTGTTCTTCCACCCATACTCTGTATGAATTTTGGATCCTGTACAGCTGCAATCTCTTTCTTCTTCCATTCACATAAGCATGAAAGAACTTGGAATTTCTTTCCCCTTATTCAAAGCACTGCATGCCTGCTTTCTGTCTCCAAAATTCCTCCTCCAAATGCATGTATCTAGCTAAGTCAGCTTGGGATTTATG</gDNA_template>
            <first_frame> *  F  A  K  I  N  S  G  N  N  K  I  I  L  P  C  T  T  L  E  T  T  L  L  M  K  L  L  R  L  M  G  L  T  L  L  K  V  *  M  L  S  F  L  G  I  R  T  G  F  V  *  V  T  T  N  K  S  G  W  F  L  S  P  H  K  S  M  H  N  Y  G  I  L  L  N  N  F  P  S  R  L  T  K  K  T  R  K  T  I  W  F  T  R  T  F  S  T  W  I  K  N  C  C  F  N  F  C  L  I  R  C  S  I  L  F  S  F  C  S  A  L  I  N  F  G  M  F  S  N  S  S  K  S  S  G  K  L  S  S  V  N  *  F  *  K  N  F  T  A  S  L  A  T  S  V  C  S  S  T  H  T  L  Y  E  F  W  I  L  Y  S  C  N  L  F  L  L  P  F  T  *  A  *  K  N  L  E  F  L  S  P  Y  S  K  H  C  M  P  A  F  C  L  Q  N  S  S  S  K  C  M  Y  L  A  K  S  A  W  D  L   </first_frame>
            <second_frame>  D  L  L  K  S  T  Q  A  I  T  K  S  F  F  H  A  Q  L  *  K  P  L  C  *  *  S  C  *  G  *  W  V  *  H  Y  *  R  S  R  C  Y  L  S  *  V  S  E  P  D  L  Y  E  *  Q  L  T  N  L  G  G  S  C  P  P  I  K  A  C  T  T  M  V  S  S  L  I  I  S  Q  A  D  *  Q  K  R  P  V  K  P  S  G  S  L  E  L  S  P  L  G  S  K  T  A  A  L  T  S  A  S  S  G  A  L  F  C  S  H  S  V  L  H  *  S  T  L  E  C  F  L  I  V  Q  S  P  Q  G  N  Y  P  P  *  I  D  F  E  K  T  L  L  L  H  W  P  P  L  S  V  L  P  P  I  L  C  M  N  F  G  S  C  T  A  A  I  S  F  F  F  H  S  H  K  H  E  R  T  W  N  F  F  P  L  I  Q  S  T  A  C  L  L  S  V  S  K  I  P  P  P  N  A  C  I  *  L  S  Q  L  G  I  Y  </second_frame>
            <third_frame>   I  C  *  N  Q  L  R  Q  *  Q  N  H  S  S  M  H  N  S  R  N  H  F  V  N  E  V  A  K  A  D  G  S  D  I  I  E  G  L  D  V  I  F  L  R  Y  Q  N  R  I  C  M  S  N  N  *  Q  I  W  V  V  P  V  P  P  *  K  H  A  Q  L  W  Y  P  P  *  *  F  P  K  P  I  D  K  K  D  P  *  N  H  L  V  H  *  N  F  L  H  L  D  Q  K  L  L  L  *  L  L  P  H  Q  V  L  Y  S  V  L  I  L  F  C  I  D  Q  L  W  N  V  F  *  *  F  K  V  L  R  E  T  I  L  R  E  L  I  L  K  K  L  Y  C  F  I  G  H  L  C  L  F  F  H  P  Y  S  V  *  I  L  D  P  V  Q  L  Q  S  L  S  S  S  I  H  I  S  M  K  E  L  G  I  S  F  P  L  F  K  A  L  H  A  C  F  L  S  P  K  F  L  L  Q  M  H  V  S  S  *  V  S  L  G  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70086" stop="70358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTNKSGWFLSPHKSMHNYGILLNNFPSRLTKKTRKTIWFTRTFSTWIKNCCFNFCLIRCSILFSFCSALINFGMFSNSSKSSGKLSSVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70354" stop="70566"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDFEKTLLLHWPPLSVLPPILCMNFGSCTAAISFFFHSHKHERTWNFFPLIQSTACLLSVSKIPPPNACI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="76286" PGL_stop="78354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76286" e_stop="76566"/>
            <exon e_start="77050" e_stop="77174"/>
            <exon e_start="77275" e_stop="77520"/>
            <exon e_start="77616" e_stop="77844"/>
            <exon e_start="77924" e_stop="78354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="0.996"/>
          <exon-intron don_prob="0.991" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76286" e_stop="76566" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.980">
            <gDNA_intron_boundary i_start="76567" i_stop="77049" i_length="483"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77050" e_stop="77174" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.994">
            <gDNA_intron_boundary i_start="77175" i_stop="77274" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="77275" e_stop="77520" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="77521" i_stop="77615" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77616" e_stop="77844" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.982">
            <gDNA_intron_boundary i_start="77845" i_stop="77923" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77924" e_stop="78354" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76286" stop="76566"/>
              <exon start="77050" stop="77174"/>
              <exon start="77275" stop="77520"/>
              <exon start="77616" stop="77680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76287" stop="76566"/>
              <exon start="77050" stop="77174"/>
              <exon start="77275" stop="77459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77374" stop="77520"/>
              <exon start="77616" stop="77844"/>
              <exon start="77924" stop="78354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAATCCAATATATATTTTTCTTTCTCATTCTCCTGAAATGGCTTGTTATGGCAAGATATTTGCCACAATATTTATAGTTTTGAACTTAAAAACATTTGTTGAAGGTGCACCACAAGTACCATGTTACTTCATATTTGGAGATTCGTTACTTGATAATGGAAACAACAATGAACTTAACACAACGGCAAAGGCTAATTACCCACCTTACGGGGTGGACTTCCAGGGTGGTCGTCCGACCGGCCGTTTCACCAACGGCCGTAACACGGCTGACTTCCTAG : CGGAATACTTGGGATTTGATCACTACATTCCCCCTTTTGCAAGTGTAAAAGATAGCGAGATCTTGGAAGGTGTAAATTATGCATCTGGTTCAGCTGGAATTCGCAACGACAGTGGAAGTCATCTT : GGTGATCGGATTTACTTGGGCAGACAATTGGAGAATCATCAAACAACAATTTCGCGTATAGCTAATCTGGTGGGGAATACAACTTCAGCTCAAAAGCACTTGAATAAATGCTTATTCATAGTTGGAATAGGCAGCAATGACTACATCAACAATTACTTGATGCCTGAAATATATCCCTCAAGTCATTTATATACACCAACACAATATGCAACTGCCTTGATTGATCAATATTCACAACATTTGAGG : ACTTTGTATGAAGATGGAGCAAGGAAAGTTGCCTTATTTGGACTAGGCCAAATAGGCTGCATTCCAGCAGAGTTACAAAAACACGATACACGTAGATGTGTGAGCTCAACAAATAACGCGATTCAACAATTTAACAGCAAGCTAAAGTCTCTTGTAGGTGATCTCAATACTAATTTTCCAGACGCGAAGTTCACCTATATAAACATGTACAGCATTTCATCAATCATCG : ATCCACTTAGCGTGTTTACTCGTCCATGCTGTAACGTTTTGGAAACGATGCCTGAAGGACAATGTGTTCCTGGAGAAACTCCATGCTTTCTTAGAGGGATTTATCTTTTCTATGATAATTTTCATCCAACAGAGATTGCCAATAGAATCGCGACTAGCAGAGCTTATAATGCTCTTCTACCGTCTGATGCTTATCCTATGGATATTCATCACTTGATCAGGACGAACAATGTTGTGTATGATGAGTAATGAACTCAGGTGTTTCGCTAGTTGATTGAATATATACGTGTAATAAGTTGAACTTATGATCTGCCTATTTTGGGATTTTTCTAATTTGTTCCCACATTTGGCTACAAGATATACCCTTCGTACGTATGAGCCCTGAAATGCCCTTATTTGTATGATCGGACACATTTTAAAATATTATTACAT</gDNA_template>
            <first_frame> I  K  S  N  I  Y  F  S  F  S  F  S  *  N  G  L  L  W  Q  D  I  C  H  N  I  Y  S  F  E  L  K  N  I  C  *  R  C  T  T  S  T  M  L  L  H  I  W  R  F  V  T  *  *  W  K  Q  Q  *  T  *  H  N  G  K  G  *  L  P  T  L  R  G  G  L  P  G  W  S  S  D  R  P  F  H  Q  R  P  *  H  G  *  L  P  S :   G  I  L  G  I  *  S  L  H  S  P  F  C  K  C  K  R  *  R  D  L  G  R  C  K  L  C  I  W  F  S  W  N  S  Q  R  Q  W  K  S  S   : W  *  S  D  L  L  G  Q  T  I  G  E  S  S  N  N  N  F  A  Y  S  *  S  G  G  E  Y  N  F  S  S  K  A  L  E  *  M  L  I  H  S  W  N  R  Q  Q  *  L  H  Q  Q  L  L  D  A  *  N  I  S  L  K  S  F  I  Y  T  N  T  I  C  N  C  L  D  *  S  I  F  T  T  F  E   : D  F  V  *  R  W  S  K  E  S  C  L  I  W  T  R  P  N  R  L  H  S  S  R  V  T  K  T  R  Y  T  *  M  C  E  L  N  K  *  R  D  S  T  I  *  Q  Q  A  K  V  S  C  R  *  S  Q  Y  *  F  S  R  R  E  V  H  L  Y  K  H  V  Q  H  F  I  N  H  R :   S  T  *  R  V  Y  S  S  M  L  *  R  F  G  N  D  A  *  R  T  M  C  S  W  R  N  S  M  L  S  *  R  D  L  S  F  L  *  *  F  S  S  N  R  D  C  Q  *  N  R  D  *  Q  S  L  *  C  S  S  T  V  *  C  L  S  Y  G  Y  S  S  L  D  Q  D  E  Q  C  C  V  *  *  V  M  N  S  G  V  S  L  V  D  *  I  Y  T  C  N  K  L  N  L  *  S  A  Y  F  G  I  F  L  I  C  S  H  I  W  L  Q  D  I  P  F  V  R  M  S  P  E  M  P  L  F  V  *  S  D  T  F  *  N  I  I  T  </first_frame>
            <second_frame>  *  N  P  I  Y  I  F  L  S  H  S  P  E  M  A  C  Y  G  K  I  F  A  T  I  F  I  V  L  N  L  K  T  F  V  E  G  A  P  Q  V  P  C  Y  F  I  F  G  D  S  L  L  D  N  G  N  N  N  E  L  N  T  T  A  K  A  N  Y  P  P  Y  G  V  D  F  Q  G  G  R  P  T  G  R  F  T  N  G  R  N  T  A  D  F  L   : A  E  Y  L  G  F  D  H  Y  I  P  P  F  A  S  V  K  D  S  E  I  L  E  G  V  N  Y  A  S  G  S  A  G  I  R  N  D  S  G  S  H  L  :  G  D  R  I  Y  L  G  R  Q  L  E  N  H  Q  T  T  I  S  R  I  A  N  L  V  G  N  T  T  S  A  Q  K  H  L  N  K  C  L  F  I  V  G  I  G  S  N  D  Y  I  N  N  Y  L  M  P  E  I  Y  P  S  S  H  L  Y  T  P  T  Q  Y  A  T  A  L  I  D  Q  Y  S  Q  H  L  R  :  T  L  Y  E  D  G  A  R  K  V  A  L  F  G  L  G  Q  I  G  C  I  P  A  E  L  Q  K  H  D  T  R  R  C  V  S  S  T  N  N  A  I  Q  Q  F  N  S  K  L  K  S  L  V  G  D  L  N  T  N  F  P  D  A  K  F  T  Y  I  N  M  Y  S  I  S  S  I  I   : D  P  L  S  V  F  T  R  P  C  C  N  V  L  E  T  M  P  E  G  Q  C  V  P  G  E  T  P  C  F  L  R  G  I  Y  L  F  Y  D  N  F  H  P  T  E  I  A  N  R  I  A  T  S  R  A  Y  N  A  L  L  P  S  D  A  Y  P  M  D  I  H  H  L  I  R  T  N  N  V  V  Y  D  E  *  *  T  Q  V  F  R  *  L  I  E  Y  I  R  V  I  S  *  T  Y  D  L  P  I  L  G  F  F  *  F  V  P  T  F  G  Y  K  I  Y  P  S  Y  V  *  A  L  K  C  P  Y  L  Y  D  R  T  H  F  K  I  L  L  H </second_frame>
            <third_frame>   K  I  Q  Y  I  F  F  F  L  I  L  L  K  W  L  V  M  A  R  Y  L  P  Q  Y  L  *  F  *  T  *  K  H  L  L  K  V  H  H  K  Y  H  V  T  S  Y  L  E  I  R  Y  L  I  M  E  T  T  M  N  L  T  Q  R  Q  R  L  I  T  H  L  T  G  W  T  S  R  V  V  V  R  P  A  V  S  P  T  A  V  T  R  L  T  S  *  :  R  N  T  W  D  L  I  T  T  F  P  L  L  Q  V  *  K  I  A  R  S  W  K  V  *  I  M  H  L  V  Q  L  E  F  A  T  T  V  E  V  I  L :   V  I  G  F  T  W  A  D  N  W  R  I  I  K  Q  Q  F  R  V  *  L  I  W  W  G  I  Q  L  Q  L  K  S  T  *  I  N  A  Y  S  *  L  E  *  A  A  M  T  T  S  T  I  T  *  C  L  K  Y  I  P  Q  V  I  Y  I  H  Q  H  N  M  Q  L  P  *  L  I  N  I  H  N  I  *  G :   L  C  M  K  M  E  Q  G  K  L  P  Y  L  D  *  A  K  *  A  A  F  Q  Q  S  Y  K  N  T  I  H  V  D  V  *  A  Q  Q  I  T  R  F  N  N  L  T  A  S  *  S  L  L  *  V  I  S  I  L  I  F  Q  T  R  S  S  P  I  *  T  C  T  A  F  H  Q  S  S  :  I  H  L  A  C  L  L  V  H  A  V  T  F  W  K  R  C  L  K  D  N  V  F  L  E  K  L  H  A  F  L  E  G  F  I  F  S  M  I  I  F  I  Q  Q  R  L  P  I  E  S  R  L  A  E  L  I  M  L  F  Y  R  L  M  L  I  L  W  I  F  I  T  *  S  G  R  T  M  L  C  M  M  S  N  E  L  R  C  F  A  S  *  L  N  I  Y  V  *  *  V  E  L  M  I  C  L  F  W  D  F  S  N  L  F  P  H  L  A  T  R  Y  T  L  R  T  Y  E  P  *  N  A  L  I  C  M  I  G  H  I  L  K  Y  Y  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76290" stop="76566"/>
                    <exon start="77050" stop="77174"/>
                    <exon start="77275" stop="77520"/>
                    <exon start="77616" stop="77844"/>
                    <exon start="77924" stop="78171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPIYIFLSHSPEMACYGKIFATIFIVLNLKTFVEGAPQVPCYFIFGDSLLDNGNNNELNTTAKANYPPYGVDFQGGRPTGRFTNGRNTADFLAEYLGFDHYIPPFASVKDSEILEGVNYASGSAGIRNDSGSHLGDRIYLGRQLENHQTTISRIANLVGNTTSAQKHLNKCLFIVGIGSNDYINNYLMPEIYPSSHLYTPTQYATALIDQYSQHLRTLYEDGARKVALFGLGQIGCIPAELQKHDTRRCVSSTNNAIQQFNSKLKSLVGDLNTNFPDAKFTYINMYSISSIIDPLSVFTRPCCNVLETMPEGQCVPGETPCFLRGIYLFYDNFHPTEIANRIATSRAYNALLPSDAYPMDIHHLIRTNNVVYDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="85950" PGL_stop="88751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85950" e_stop="86251"/>
            <exon e_start="86714" e_stop="86838"/>
            <exon e_start="87766" e_stop="88011"/>
            <exon e_start="88087" e_stop="88315"/>
            <exon e_start="88407" e_stop="88751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.900" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85950" e_stop="86251" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86252" i_stop="86713" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86714" e_stop="86838" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="86839" i_stop="87765" i_length="927"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87766" e_stop="88011" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.986">
            <gDNA_intron_boundary i_start="88012" i_stop="88086" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88087" e_stop="88315" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.900">
            <gDNA_intron_boundary i_start="88316" i_stop="88406" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="88407" e_stop="88751" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85950" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="87820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85958" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="87955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85960" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="88011"/>
              <exon start="88087" stop="88256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85960" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="87783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85960" stop="86251"/>
              <exon start="86714" stop="86743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85967" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="88011"/>
              <exon start="88087" stop="88180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85968" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85988" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="87813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86207" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="88011"/>
              <exon start="88087" stop="88315"/>
              <exon start="88407" stop="88457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="86251"/>
              <exon start="86714" stop="86838"/>
              <exon start="87766" stop="88011"/>
              <exon start="88087" stop="88311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86727" stop="86838"/>
              <exon start="87766" stop="88011"/>
              <exon start="88087" stop="88300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87772" stop="88011"/>
              <exon start="88087" stop="88315"/>
              <exon start="88407" stop="88647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87773" stop="88011"/>
              <exon start="88087" stop="88291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87773" stop="88011"/>
              <exon start="88087" stop="88283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87811" stop="88011"/>
              <exon start="88087" stop="88315"/>
              <exon start="88407" stop="88654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87904" stop="88011"/>
              <exon start="88087" stop="88315"/>
              <exon start="88407" stop="88672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88285" stop="88315"/>
              <exon start="88407" stop="88751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88298" stop="88315"/>
              <exon start="88407" stop="88751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCATTATAATTGAGTAATAATTTCTCAATTATATTTTTCATCTTCTTCTTGAATTTAATTCTCTCAATGGCGTGCTATGTTACAATTATATTTAGTATTGTGTTATATTTAGTTTTGAACTTAGTTGAAGGTGCACCGGAAGTACCTTGCTATTTCATTTTTGGGGATTCGTTACTTGATAATGGCAATAATAATGACCTTGACACCGCGGCTAGGGCTAATTATCCACCTTATGGAGTTGATTTCCCGGATGGTCCGACTGGCCGATTCACCAATGGCCGAAATATAGCTGACTTCCTAG : CTGAACACCTTGATTTTGATCACTACATACCATCTTTTGCAAGCGCAACGGGTGATGAGATTTTGGAAGGTGTGAATTATGCATCTGGTTCAGCTGGAATTCGAAACGATACGGGAAGTCATCTT : GGTTATCGGATTTACTTGGGCAAACAATTGGAGAATCATAAAGTCACAATTTCTCGTATTGCTGATTTGCTAGGAAATGCAACTTCAGCCAAAAATCACTTAAATAAATGTCTTTTCATTGTTGGAATAGGCAGCAATGACTACATCAATAATTTTCTAATGCCAGATGTATACCAATCAAGTCATTTGTACTCACCAAGTCAGTATGCAACACTTCTCATTCAGCAGTACTCCCAACAATTAAAG : GAATTGTATTCAGATGGAGCAAGGAAAATAGCACTTTTTGGACTACCTCAAATAGGTTGCATTCCAGATCAATTGAACCAACACAGCACAATTTTTTGTGTGGATTCAACAAATAAAGCAGTTCAATTATTCAACAAAAACTTAAAAGCTCTTGTTGATGATCTCAATACTAATTTCCCAGATGCAAAATTCATATACATAAACATGTATAGCATCTCATCAGCGATTG : CTATAACTCTATTGAATAATCCATGCTGTCAAATTTCTAAAACTATGCCTGAAGGACAATGTATTCCAGGAAAATCTCCATGTCTGTTTAGGGCTACACATTTTTTTTATGATAATTTCCATCCCACTGAAATTGGAAATAATATAGCTACGAGTAGAGCTTACAGAGCTCTTCTACCGTCTGATTCTTATCCAATGGATATTCGTCATTTGGTGAGGGCCAATAATGTGTACTATGATGATCAGTAAAATTTCAACGTGTTACACGAATATTATTTAATGTAATAATTGTGTATGATGTATGTTTCATAATAAGAAACCAAAAAATCTTATTGGATTTGAATAA</gDNA_template>
            <first_frame> T  I  I  I  E  *  *  F  L  N  Y  I  F  H  L  L  L  E  F  N  S  L  N  G  V  L  C  Y  N  Y  I  *  Y  C  V  I  F  S  F  E  L  S  *  R  C  T  G  S  T  L  L  F  H  F  W  G  F  V  T  *  *  W  Q  *  *  *  P  *  H  R  G  *  G  *  L  S  T  L  W  S  *  F  P  G  W  S  D  W  P  I  H  Q  W  P  K  Y  S  *  L  P  S :   *  T  P  *  F  *  S  L  H  T  I  F  C  K  R  N  G  *  *  D  F  G  R  C  E  L  C  I  W  F  S  W  N  S  K  R  Y  G  K  S  S   : W  L  S  D  L  L  G  Q  T  I  G  E  S  *  S  H  N  F  S  Y  C  *  F  A  R  K  C  N  F  S  Q  K  S  L  K  *  M  S  F  H  C  W  N  R  Q  Q  *  L  H  Q  *  F  S  N  A  R  C  I  P  I  K  S  F  V  L  T  K  S  V  C  N  T  S  H  S  A  V  L  P  T  I  K   : G  I  V  F  R  W  S  K  E  N  S  T  F  W  T  T  S  N  R  L  H  S  R  S  I  E  P  T  Q  H  N  F  L  C  G  F  N  K  *  S  S  S  I  I  Q  Q  K  L  K  S  S  C  *  *  S  Q  Y  *  F  P  R  C  K  I  H  I  H  K  H  V  *  H  L  I  S  D  C :   Y  N  S  I  E  *  S  M  L  S  N  F  *  N  Y  A  *  R  T  M  Y  S  R  K  I  S  M  S  V  *  G  Y  T  F  F  L  *  *  F  P  S  H  *  N  W  K  *  Y  S  Y  E  *  S  L  Q  S  S  S  T  V  *  F  L  S  N  G  Y  S  S  F  G  E  G  Q  *  C  V  L  *  *  S  V  K  F  Q  R  V  T  R  I  L  F  N  V  I  I  V  Y  D  V  C  F  I  I  R  N  Q  K  I  L  L  D  L  N   </first_frame>
            <second_frame>  P  L  *  L  S  N  N  F  S  I  I  F  F  I  F  F  L  N  L  I  L  S  M  A  C  Y  V  T  I  I  F  S  I  V  L  Y  L  V  L  N  L  V  E  G  A  P  E  V  P  C  Y  F  I  F  G  D  S  L  L  D  N  G  N  N  N  D  L  D  T  A  A  R  A  N  Y  P  P  Y  G  V  D  F  P  D  G  P  T  G  R  F  T  N  G  R  N  I  A  D  F  L   : A  E  H  L  D  F  D  H  Y  I  P  S  F  A  S  A  T  G  D  E  I  L  E  G  V  N  Y  A  S  G  S  A  G  I  R  N  D  T  G  S  H  L  :  G  Y  R  I  Y  L  G  K  Q  L  E  N  H  K  V  T  I  S  R  I  A  D  L  L  G  N  A  T  S  A  K  N  H  L  N  K  C  L  F  I  V  G  I  G  S  N  D  Y  I  N  N  F  L  M  P  D  V  Y  Q  S  S  H  L  Y  S  P  S  Q  Y  A  T  L  L  I  Q  Q  Y  S  Q  Q  L  K  :  E  L  Y  S  D  G  A  R  K  I  A  L  F  G  L  P  Q  I  G  C  I  P  D  Q  L  N  Q  H  S  T  I  F  C  V  D  S  T  N  K  A  V  Q  L  F  N  K  N  L  K  A  L  V  D  D  L  N  T  N  F  P  D  A  K  F  I  Y  I  N  M  Y  S  I  S  S  A  I   : A  I  T  L  L  N  N  P  C  C  Q  I  S  K  T  M  P  E  G  Q  C  I  P  G  K  S  P  C  L  F  R  A  T  H  F  F  Y  D  N  F  H  P  T  E  I  G  N  N  I  A  T  S  R  A  Y  R  A  L  L  P  S  D  S  Y  P  M  D  I  R  H  L  V  R  A  N  N  V  Y  Y  D  D  Q  *  N  F  N  V  L  H  E  Y  Y  L  M  *  *  L  C  M  M  Y  V  S  *  *  E  T  K  K  S  Y  W  I  *  I  </second_frame>
            <third_frame>   H  Y  N  *  V  I  I  S  Q  L  Y  F  S  S  S  S  *  I  *  F  S  Q  W  R  A  M  L  Q  L  Y  L  V  L  C  Y  I  *  F  *  T  *  L  K  V  H  R  K  Y  L  A  I  S  F  L  G  I  R  Y  L  I  M  A  I  I  M  T  L  T  P  R  L  G  L  I  I  H  L  M  E  L  I  S  R  M  V  R  L  A  D  S  P  M  A  E  I  *  L  T  S  *  :  L  N  T  L  I  L  I  T  T  Y  H  L  L  Q  A  Q  R  V  M  R  F  W  K  V  *  I  M  H  L  V  Q  L  E  F  E  T  I  R  E  V  I  L :   V  I  G  F  T  W  A  N  N  W  R  I  I  K  S  Q  F  L  V  L  L  I  C  *  E  M  Q  L  Q  P  K  I  T  *  I  N  V  F  S  L  L  E  *  A  A  M  T  T  S  I  I  F  *  C  Q  M  Y  T  N  Q  V  I  C  T  H  Q  V  S  M  Q  H  F  S  F  S  S  T  P  N  N  *  R :   N  C  I  Q  M  E  Q  G  K  *  H  F  L  D  Y  L  K  *  V  A  F  Q  I  N  *  T  N  T  A  Q  F  F  V  W  I  Q  Q  I  K  Q  F  N  Y  S  T  K  T  *  K  L  L  L  M  I  S  I  L  I  S  Q  M  Q  N  S  Y  T  *  T  C  I  A  S  H  Q  R  L  :  L  *  L  Y  *  I  I  H  A  V  K  F  L  K  L  C  L  K  D  N  V  F  Q  E  N  L  H  V  C  L  G  L  H  I  F  F  M  I  I  S  I  P  L  K  L  E  I  I  *  L  R  V  E  L  T  E  L  F  Y  R  L  I  L  I  Q  W  I  F  V  I  W  *  G  P  I  M  C  T  M  M  I  S  K  I  S  T  C  Y  T  N  I  I  *  C  N  N  C  V  *  C  M  F  H  N  K  K  P  K  N  L  I  G  F  E  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0016P15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85960" stop="86251"/>
                    <exon start="86714" stop="86838"/>
                    <exon start="87766" stop="88011"/>
                    <exon start="88087" stop="88315"/>
                    <exon start="88407" stop="88654"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNNFSIIFFIFFLNLILSMACYVTIIFSIVLYLVLNLVEGAPEVPCYFIFGDSLLDNGNNNDLDTAARANYPPYGVDFPDGPTGRFTNGRNIADFLAEHLDFDHYIPSFASATGDEILEGVNYASGSAGIRNDTGSHLGYRIYLGKQLENHKVTISRIADLLGNATSAKNHLNKCLFIVGIGSNDYINNFLMPDVYQSSHLYSPSQYATLLIQQYSQQLKELYSDGARKIALFGLPQIGCIPDQLNQHSTIFCVDSTNKAVQLFNKNLKALVDDLNTNFPDAKFIYINMYSISSAIAITLLNNPCCQISKTMPEGQCIPGKSPCLFRATHFFYDNFHPTEIGNNIATSRAYRALLPSDSYPMDIRHLVRANNVYYDDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86901" e_stop="87507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86901" e_stop="87507" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86901" stop="87507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATAGTAGTATCGATTCTTACGCTTGCAGTAGACATACATATAATTTATAGAATCAAATAGTAGTATCGAATCTTACGCTTATAGTAGACATACATATAATTTGTTGGTAATCCAAAATCCTATAAATTGTGAGTTCAAAAATTCTAAACACGTCAAGTTAAATATTTGAAATGTTTATAAGTTGCATATATAATATTTTATTCTTATTAATAATCTTAGAGAAGCAATAATATGATATCTAACATTATAAACCAACTAATTACTCAAGGACACTTAATACTAGTAGACTTTTCTCCATATATATTGATTTGTCTAATCAGCAAAATGCTTAATCACGTCAAAGTACTTTACATATTGCATTATTGGAGCTAAAAAGTCATGAATGACAAAGTATTATATGATACTTTCTTTTTTCACCTTTACTTAGTTTATTATATTAAAAAAATTATTTTTATTTGAACTTATCACGTTTAAACATCAGTAAACTATACTCGTACCAAATTGTTTAATTTATTTTAAGGTAGGGTCAAAACAAAATTCGACAAAATAAAAGCAAATAGATGAAATACATATATTATTCTATGATTAGTTAATCATTCCTCT</gDNA_template>
            <first_frame> S  N  S  S  I  D  S  Y  A  C  S  R  H  T  Y  N  L  *  N  Q  I  V  V  S  N  L  T  L  I  V  D  I  H  I  I  C  W  *  S  K  I  L  *  I  V  S  S  K  I  L  N  T  S  S  *  I  F  E  M  F  I  S  C  I  Y  N  I  L  F  L  L  I  I  L  E  K  Q  *  Y  D  I  *  H  Y  K  P  T  N  Y  S  R  T  L  N  T  S  R  L  F  S  I  Y  I  D  L  S  N  Q  Q  N  A  *  S  R  Q  S  T  L  H  I  A  L  L  E  L  K  S  H  E  *  Q  S  I  I  *  Y  F  L  F  S  P  L  L  S  L  L  Y  *  K  N  Y  F  Y  L  N  L  S  R  L  N  I  S  K  L  Y  S  Y  Q  I  V  *  F  I  L  R  *  G  Q  N  K  I  R  Q  N  K  S  K  *  M  K  Y  I  Y  Y  S  M  I  S  *  S  F  L  </first_frame>
            <second_frame>  Q  I  V  V  S  I  L  T  L  A  V  D  I  H  I  I  Y  R  I  K  *  *  Y  R  I  L  R  L  *  *  T  Y  I  *  F  V  G  N  P  K  S  Y  K  L  *  V  Q  K  F  *  T  R  Q  V  K  Y  L  K  C  L  *  V  A  Y  I  I  F  Y  S  Y  *  *  S  *  R  S  N  N  M  I  S  N  I  I  N  Q  L  I  T  Q  G  H  L  I  L  V  D  F  S  P  Y  I  L  I  C  L  I  S  K  M  L  N  H  V  K  V  L  Y  I  L  H  Y  W  S  *  K  V  M  N  D  K  V  L  Y  D  T  F  F  F  H  L  Y  L  V  Y  Y  I  K  K  I  I  F  I  *  T  Y  H  V  *  T  S  V  N  Y  T  R  T  K  L  F  N  L  F  *  G  R  V  K  T  K  F  D  K  I  K  A  N  R  *  N  T  Y  I  I  L  *  L  V  N  H  S  S </second_frame>
            <third_frame>   K  *  *  Y  R  F  L  R  L  Q  *  T  Y  I  *  F  I  E  S  N  S  S  I  E  S  Y  A  Y  S  R  H  T  Y  N  L  L  V  I  Q  N  P  I  N  C  E  F  K  N  S  K  H  V  K  L  N  I  *  N  V  Y  K  L  H  I  *  Y  F  I  L  I  N  N  L  R  E  A  I  I  *  Y  L  T  L  *  T  N  *  L  L  K  D  T  *  Y  *  *  T  F  L  H  I  Y  *  F  V  *  S  A  K  C  L  I  T  S  K  Y  F  T  Y  C  I  I  G  A  K  K  S  *  M  T  K  Y  Y  M  I  L  S  F  F  T  F  T  *  F  I  I  L  K  K  L  F  L  F  E  L  I  T  F  K  H  Q  *  T  I  L  V  P  N  C  L  I  Y  F  K  V  G  S  K  Q  N  S  T  K  *  K  Q  I  D  E  I  H  I  L  F  Y  D  *  L  I  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0016P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 87 chains have been computed
$ 
$ memory statistics:
$ 136880 bytes spliced alignments in total
$ 64 spliced alignments have been stored
$ 2138 bytes was the average size of a spliced alignment
$ 13848 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1978 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 95 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:37:56
-->
