<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:49:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550294" ref_strand="+" ref_description="SGN-E550294 [TUS-5-C25]">
      <seq>taaaagctcaatgggagtggacaagtacatgtgacagtgagtaaaaagaaggaaaaccattccttccatttgctccagacctgaataagagtctaagttgcacggactattcactgttgctgttgcacccgtgtacgagacgcgtgcgcgtatcgcacgcgtccgagggatacgtgtgggatttggtcaacccacattggatactttgaccccgagtccatagaaaaatttgtgggaaaattgagatatcaaaaaagataaagacaatagatttaaaacatggtaaatgacttacattcaatattatattccttttgcctcctttttagctttttcctctaggtcaatatttgttgctgcatgttttatgcctaatggagagaaactaagagttcaagcagatgtgtttggcttctggtacacagtagcaatgatctgtgcggagagctggtggaattaagtccttgaatgccttccgttttgttattttaggggaacaaccaaagactttgaatgaagaagttggggtcttggggaaaatgagtaagaagatctttcaaaatttgaaatatctctatagttctattttatattttggaattttttagccaaattccagcacccttatcgctgacattattcacattttaggaaatactctactggctaacaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="22467" stop="23743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22767" g_stop="23443" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E550294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22767" e_stop="23443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGCTCAATGGGAGTGGACAAGTACATGTGACAGTGAGTAAAAAGAAGGAAAACCATTCCTTCCATTTGCTCCAGACCTGAATAAGAGTCTAAGTTGCACGGACTATTCACTGTTGCTGTTGCACCCGTGTACGAGACGCGTGCGCGTATCGCACGCGTCCGAGGGATACGTGTGGGATTTGGTCAACCCACATTGGATACTTTGACCCCGAGTCCATAGAAAAATTTGTGGGAAAATTGAGATATCAAAAAAGATAAAGACAATAGATTTAAAACATGGTAAATGACTTACATTCAATATTATATTCCTTTTGCCTCCTTTTTAGCTTTTTCCTCTAGGTCAATATTTGTTGCTGCATGTTTTATGCCTAATGGAGAGAAACTAAGAGTTCAAGCAGATGTGTTTGGCTTCTGGTACACAGTAGCAATGATCTGTGCGGAGAGCTGGTGGAATTAAGTCCTTGAATGCCTTCCGTTTTGTTATTTTAGGGGAACAACCAAAGACTTTGAATGAAGAAGTTGGGGTCTTGGGGAAAATGAGTAAGAAGATCTTTCAAAATTTGAAATATCTCTATAGTTCTATTTTATATTTTGGAATTTTTTAGCCAAATTCCAGCACCCTTATCGCTGACATTATTCACATTTTAGGAAATACTCTACTGGCTAACAAGATT</genome_strand>
        <mrna_strand>TAAAAGCTCAATGGGAGTGGACAAGTACATGTGACAGTGAGTAAAAAGAAGGAAAACCATTCCTTCCATTTGCTCCAGACCTGAATAAGAGTCTAAGTTGCACGGACTATTCACTGTTGCTGTTGCACCCGTGTACGAGACGCGTGCGCGTATCGCACGCGTCCGAGGGATACGTGTGGGATTTGGTCAACCCACATTGGATACTTTGACCCCGAGTCCATAGAAAAATTTGTGGGAAAATTGAGATATCAAAAAAGATAAAGACAATAGATTTAAAACATGGTAAATGACTTACATTCAATATTATATTCCTTTTGCCTCCTTTTTAGCTTTTTCCTCTAGGTCAATATTTGTTGCTGCATGTTTTATGCCTAATGGAGAGAAACTAAGAGTTCAAGCAGATGTGTTTGGCTTCTGGTACACAGTAGCAATGATCTGTGCGGAGAGCTGGTGGAATTAAGTCCTTGAATGCCTTCCGTTTTGTTATTTTAGGGGAACAACCAAAGACTTTGAATGAAGAAGTTGGGGTCTTGGGGAAAATGAGTAAGAAGATCTTTCAAAATTTGAAATATCTCTATAGTTCTATTTTATATTTTGGAATTTTTTAGCCAAATTCCAGCACCCTTATCGCTGACATTATTCACATTTTAGGAAATACTCTACTGGCTAACAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209685" ref_strand="+" ref_description="SGN-E209685 [cLEC-54-L24]">
      <seq>aaaagctcaatgggagtggacaagtacatgtgacagtgagtaaaaagaaggaaaaccattccttccatttgctccagacctgaataagagtctaagttgcacggactattcactgttgctgttgcacccgtgtacgagacgcgtgcgcgtatcgcacgcgtccgagggatacgtgtgggatttggtcaacccacattggatactttgaccccgagtccatagaaaaatttgtgggaaaattgagatatcaaaaaagataaagacaatagatttaaaacatggtaaatgacttacattcaatattatattccttttgcctcctttttagctttttcctctaggtcaatatttgttgctgcatgctttatgcctaatggagagaaactaagagttcaagcagatgtgtttggcttctggtacacagtagcaatgatctgtgcggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="22468" stop="23513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22768" g_stop="23213" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E209685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22768" e_stop="23213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTCAATGGGAGTGGACAAGTACATGTGACAGTGAGTAAAAAGAAGGAAAACCATTCCTTCCATTTGCTCCAGACCTGAATAAGAGTCTAAGTTGCACGGACTATTCACTGTTGCTGTTGCACCCGTGTACGAGACGCGTGCGCGTATCGCACGCGTCCGAGGGATACGTGTGGGATTTGGTCAACCCACATTGGATACTTTGACCCCGAGTCCATAGAAAAATTTGTGGGAAAATTGAGATATCAAAAAAGATAAAGACAATAGATTTAAAACATGGTAAATGACTTACATTCAATATTATATTCCTTTTGCCTCCTTTTTAGCTTTTTCCTCTAGGTCAATATTTGTTGCTGCATGTTTTATGCCTAATGGAGAGAAACTAAGAGTTCAAGCAGATGTGTTTGGCTTCTGGTACACAGTAGCAATGATCTGTGCGGAGAG</genome_strand>
        <mrna_strand>AAAAGCTCAATGGGAGTGGACAAGTACATGTGACAGTGAGTAAAAAGAAGGAAAACCATTCCTTCCATTTGCTCCAGACCTGAATAAGAGTCTAAGTTGCACGGACTATTCACTGTTGCTGTTGCACCCGTGTACGAGACGCGTGCGCGTATCGCACGCGTCCGAGGGATACGTGTGGGATTTGGTCAACCCACATTGGATACTTTGACCCCGAGTCCATAGAAAAATTTGTGGGAAAATTGAGATATCAAAAAAGATAAAGACAATAGATTTAAAACATGGTAAATGACTTACATTCAATATTATATTCCTTTTGCCTCCTTTTTAGCTTTTTCCTCTAGGTCAATATTTGTTGCTGCATGCTTTATGCCTAATGGAGAGAAACTAAGAGTTCAAGCAGATGTGTTTGGCTTCTGGTACACAGTAGCAATGATCTGTGCGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550094" ref_strand="+" ref_description="SGN-E550094 [TUS-5-C25](-)">
      <seq>gtaaatggattgatgctggaaatcggggtaatacagatgagcttataaggaagaagatgagtagaagaagtcattgctcctccattttaccaaggaaaaaagaagttctttgccacaagtggtctacaagaaaggcagcagtaaataacaacatttagactgttcacgatgtgacactcatgcctggtgatttgtccttgagtgctttgaccaagcttttgctggtcatgcctgaaattggttaccaattactacaccactgtgctgaccaaattcaaaactggggatggatctgcaacttccgttctcaagtttcaggatcatttaccaattacaatctttgtttagattttgatcacacaacgagtctgtggaactcgaaaaattgccatttaccagaaattccattgccctaaattttgcaacaatttatcaaagttaaacctaactctgagcatgaagttataggttttgaaaaaaaaagaaacttaaatctgattcaccagaagtcaacgtcagtcacacttcttgatgtaaagttctcttatacttgtctctgtcatattatatattcaaaatgtgaaagtacatgtaaatcaattcgcagaacagtcttcgaagggaaaggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="24087" stop="25317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24387" g_stop="25017" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E550094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24387" e_stop="25017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATGGATTGATGCTGGAAATCGGGGTAAAACAGATGAGCTTATAAGGAAGAAGATGAGTAGAAGAAGTCATTGCTCCTCCATTTTACCAAGGAAAAAAGAAGTTCTTTGCCACAAGTGGTCTACAAGAAAGGCAGCAGTAAATAACAACATTTAGACTGTTCACGATGTGACACTCATGCCTGGTGATTTGTCCTTGAGTGCTTTGACCAAGCTTTTGCTGGTCATGCCTGAAATTGGTTACCAATTACTACACCACTGTGCTGACCAAATTCAAAACTGGGGATGGATCTGCAACTTCCGTTCTCAAGTTTCAGGATCATTTACCAATTACAATCTTTGTTTAGATTTTGATCACACAACGAGTCTGTGGAACTCGAAAAATTGCCATTTACCAGAAATTCCATTGCCCTAAATTTTGCAACAATTTATCAAAGTTAAACCTAACTCTGAGCATGAAGTTATAGGTTTTGAAAAAAAAAGAAACTTAAATCTGATTCACCAGAAGTCAACGTCAGTCACACTTCTTGATGTAAAGTTCTCTTATACTTGTCTCTGTCATATTATATATTCAAAATGTGAAAGTACATGTAAATCAATTTGCAGAACAGTCTTCGAAGGGAAAGGTAT</genome_strand>
        <mrna_strand>GTAAATGGATTGATGCTGGAAATCGGGGTAATACAGATGAGCTTATAAGGAAGAAGATGAGTAGAAGAAGTCATTGCTCCTCCATTTTACCAAGGAAAAAAGAAGTTCTTTGCCACAAGTGGTCTACAAGAAAGGCAGCAGTAAATAACAACATTTAGACTGTTCACGATGTGACACTCATGCCTGGTGATTTGTCCTTGAGTGCTTTGACCAAGCTTTTGCTGGTCATGCCTGAAATTGGTTACCAATTACTACACCACTGTGCTGACCAAATTCAAAACTGGGGATGGATCTGCAACTTCCGTTCTCAAGTTTCAGGATCATTTACCAATTACAATCTTTGTTTAGATTTTGATCACACAACGAGTCTGTGGAACTCGAAAAATTGCCATTTACCAGAAATTCCATTGCCCTAAATTTTGCAACAATTTATCAAAGTTAAACCTAACTCTGAGCATGAAGTTATAGGTTTTGAAAAAAAAAGAAACTTAAATCTGATTCACCAGAAGTCAACGTCAGTCACACTTCTTGATGTAAAGTTCTCTTATACTTGTCTCTGTCATATTATATATTCAAAATGTGAAAGTACATGTAAATCAATTCGCAGAACAGTCTTCGAAGGGAAAGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241645" ref_strand="+" ref_description="SGN-E241645 [cLED-36-N17]">
      <seq>tctacaagaaaggcagcagtaaataacaacatttagactgttcacgatgtgacactcatgcctggtgatttgtccttgagtgctttgaccaagcttttgctggtcatgcctgaaattggttaccaattactacaccactgtgctgaccaaattcaaaactggggatggatctgcaacttccgttctcaagtttcaggatcatttaccaattacaatctttgtttagattttgatcacacaacgagtctgtggaactcgaaaaattgccatttaccagaaattccattgccctaaattttgcaacaatttatcaaagttaaacctaactctgagcatgaagttataggttttgaaaaaaaaagaaacttaaatctgattcaccagaagtcaacgtcagtcacacttcttgatgtaaagttctcttatacttgtctctgtcatattatatattcaaaatgtgaaagtacatgtaaatcaatttgcagaacagtcttcgaagggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="24209" stop="25312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24509" g_stop="25012" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E241645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24509" e_stop="25012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAAGAAAGGCAGCAGTAAATAACAACATTTAGACTGTTCACGATGTGACACTCATGCCTGGTGATTTGTCCTTGAGTGCTTTGACCAAGCTTTTGCTGGTCATGCCTGAAATTGGTTACCAATTACTACACCACTGTGCTGACCAAATTCAAAACTGGGGATGGATCTGCAACTTCCGTTCTCAAGTTTCAGGATCATTTACCAATTACAATCTTTGTTTAGATTTTGATCACACAACGAGTCTGTGGAACTCGAAAAATTGCCATTTACCAGAAATTCCATTGCCCTAAATTTTGCAACAATTTATCAAAGTTAAACCTAACTCTGAGCATGAAGTTATAGGTTTTGAAAAAAAAAGAAACTTAAATCTGATTCACCAGAAGTCAACGTCAGTCACACTTCTTGATGTAAAGTTCTCTTATACTTGTCTCTGTCATATTATATATTCAAAATGTGAAAGTACATGTAAATCAATTTGCAGAACAGTCTTCGAAGGGAAA</genome_strand>
        <mrna_strand>TCTACAAGAAAGGCAGCAGTAAATAACAACATTTAGACTGTTCACGATGTGACACTCATGCCTGGTGATTTGTCCTTGAGTGCTTTGACCAAGCTTTTGCTGGTCATGCCTGAAATTGGTTACCAATTACTACACCACTGTGCTGACCAAATTCAAAACTGGGGATGGATCTGCAACTTCCGTTCTCAAGTTTCAGGATCATTTACCAATTACAATCTTTGTTTAGATTTTGATCACACAACGAGTCTGTGGAACTCGAAAAATTGCCATTTACCAGAAATTCCATTGCCCTAAATTTTGCAACAATTTATCAAAGTTAAACCTAACTCTGAGCATGAAGTTATAGGTTTTGAAAAAAAAAGAAACTTAAATCTGATTCACCAGAAGTCAACGTCAGTCACACTTCTTGATGTAAAGTTCTCTTATACTTGTCTCTGTCATATTATATATTCAAAATGTGAAAGTACATGTAAATCAATTTGCAGAACAGTCTTCGAAGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553451" ref_strand="+" ref_description="SGN-E553451 [cTSC-1-C21]">
      <seq>gtcatatattactagtgtcaaaaaaagaagtcaggtcatatgttactactgtcattaagagaagccaggtcatcatttgatatgattttgacaatcggaaagcagacagaggaagacaagggaatcgagtgaaaatattgaatattcatttctttggctctcgtgtaccagaaatgttcataggaggataaaagcaaagtatgttcagtatataaatatggttattttgcctggtcttcctgtgggttagttccagaaaggcttacttgtatcaagtgaaacaaaagacagctgagtgacttgtatctggggctatctgatgcagctgattgtttaatgtttgacactcctaaatggagtctggaattagataaatgtgacataaaagactaagagcttgtttggattgacttaaaagttgatcaaacctacttttaattcctttttcgcttttgagagagtttggctagataagcgtgaaatagaaaagactaaaaagtatggttggattgactttaaagttggtcaaacctacttttaattccttttagcttttgagagtgtttggttaagttcaaaataacttgaaataagttaaagatgacttaaaaaaagtttaaagtaggtactccgctacttttccttttttaacttaaaagttatttaagtttgacttttttaaaactacttttagaaagctacttttttaagtcaagccaaaaagtttaaagagtgacacatgcatgctcactcttgaccgtcccttttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="27712" stop="29082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28012" g_stop="28782" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E553451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28012" e_stop="28782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATATATTACTAGTGTCAAAAAAAGAAGTCAGGTCATATGTTACTACTGTCATTAAGAGAAGCCAGGTCATCATTTGATATGATTTTGACAATCGGAAAGCAGACAGAGGAAGACAAGGGAATCGAGTGAAAATATTGAATATTCATTTCTTTGGCTCTCGTGTACCAGAAATGTTCATAGGAGGATAAAAGCAAAGTATGTTCAGTATATAAATATGGTTATTTTGCCTGGTCTTCCTGTGGGTTAGTTCCAGAAAGGCTTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTAGCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTTTAAGTCAAGCCAAAAAGTTTAAAGAGTGACACATGCATGCTCACTCTTGACCGTCCCTTTTCCA</genome_strand>
        <mrna_strand>GTCATATATTACTAGTGTCAAAAAAAGAAGTCAGGTCATATGTTACTACTGTCATTAAGAGAAGCCAGGTCATCATTTGATATGATTTTGACAATCGGAAAGCAGACAGAGGAAGACAAGGGAATCGAGTGAAAATATTGAATATTCATTTCTTTGGCTCTCGTGTACCAGAAATGTTCATAGGAGGATAAAAGCAAAGTATGTTCAGTATATAAATATGGTTATTTTGCCTGGTCTTCCTGTGGGTTAGTTCCAGAAAGGCTTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTAGCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTTTAAGTCAAGCCAAAAAGTTTAAAGAGTGACACATGCATGCTCACTCTTGACCGTCCCTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241109" ref_strand="+" ref_description="SGN-E241109 [cLED-26-M22]">
      <seq>tccagaaaggcttacttgtatcaagtgaaacaaaagacagctgagtgacttgtatctggggctatctgatgcagctgattgtttaatgtttgacactcctaaatggagtctggaattagataaatgtgacataaaagactaagagcttgtttggattgacttaaaagttgatcaaacctacttttaattcctttttcgcttttgagagagtttggctagataagcgtgaaatagaaaagactaaaaagtatggttggattgactttaaagttggtcaaacctacttttaattccttttagcttttgagagtgtttggttaagttcaaaataacttgaaataagttaaagatgacttaaaaaaagtttaaagtaggtactccgctacttttccttttttaacttaaaagttatttaagtttgacttttttaaaactacttttagaaagctacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="27963" stop="29018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28263" g_stop="28718" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E241109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28263" e_stop="28718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAAAGGCTTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTAGCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTT</genome_strand>
        <mrna_strand>TCCAGAAAGGCTTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTAGCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320801" ref_strand="+" ref_description="SGN-E320801 [cTOB-27-G20]">
      <seq>ttacttgtatcaagtgaaacaaaagacagctgagtgacttgtatctggggctatctgatgcagctgattgtttaatgtttgacactcctaaatggagtctggaattagataaatgtgacataaaagactaagagcttgtttggattgacttaaaagttgatcaaacctacttttaattcctttttcgcttttgagagagtttggctagataagcgtgaaatagaaaagactaaaaagtatggttggattgactttaaagttggtcaaacctacttttaattccttttaccttttgagagtgtttggttaagttcaaaataacttgaaataagttaaagatgacttaaaaaaagtttaaagtaggtactccgctacttttccttttttaacttaaaagttatttaagtttgacttttttaaaactacttttagaaagctacttttttaagtcaagccaaaaagtttaaagagtgacacatgcatgctcactcttgaccgtcccttttcccatttagatcctctactgtttccatctgagatgatgtgcttccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="27974" stop="29128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28274" g_stop="28829" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E320801" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28274" e_stop="28829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTAGCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTTTAAGTCAAGCCAAAAAGTTTAAAGAGTGACACATGCATGCTCACTCTTGACCGTCCCTTTTCCATTTAAGATCCTCTACTGTTTCCATCTGAGATGATGTGCTTCCTTTTA</genome_strand>
        <mrna_strand>TTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTACCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTTTAAGTCAAGCCAAAAAGTTTAAAGAGTGACACATGCATGCTCACTCTTGACCGTCCCTTTTCCCATTTAGATCCTCTACTGTTTCCATCTGAGATGATGTGCTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268227" ref_strand="+" ref_description="SGN-E268227 [cLEM-3-A20]">
      <seq>ccatttccaggctttttgctaaggtttacctggtatatttcttcctacctgcgattaaattttgcatctcaccctggattggaatatctcacctatgatcccaacttcactgacaaatatggaggaaaatatttatgaagaaattctcgaggaagatgagtatgttcacttttatgctcaggagctgctaaggcccattaggattatacatttcatattcgttgcatttatcgtctagaccggaagtactgttgaacttgtagattattaatcaaatatttgatttaagttccttgaactagtaaaatgctagaatcttgcaatcgtagaatatacattgatagagaagcctaccaactgaagaaaatgaaaagtgtgtggttgtgagaaatctttttgaggttcagtttgcattcattgagaaattatttgtttatgatttctggattacaaggagaaggagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="28625" stop="29691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28925" g_stop="29391" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E268227" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28925" e_stop="29391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCCAGGCTTTTTGCTAAGGTTTACCTGGTATATTTCTTCCTA-CTGCGATTAAATTTTGCATCTCACCCTGGATTGGAATATCTCACCTATGATCCCAACTTCACTGACAAATATGGAGGAAAATATTTATGAAGAAATTCTCGAGGAAGATGAGTATGTTCACTTTTATGCTCAGGAGCTGCTAAGGCCCATTAGGATTATACATTTCATATTCGTTGCATTTATCGTCTAGACCGGAAGTACTGTTGAACTTGTAGATTATTAATCAAATATTTGATTTAAGTTCCTTGAACTAGTAAAATGCTAGAATCTTGCAATCGTAGAATATACATTGATAGAGAAGCCTACCAACTGAAGAAAATGAAAAGTGTGTGGTTGTGAGAAATCTTTTTGAGGTTCAGTTTGCATTCATTGAGAAATTATTTGTTTATGATTTCTGGATTACAAGGAGAAGGAGAAAAA</genome_strand>
        <mrna_strand>CCATTTCCAGGCTTTTTGCTAAGGTTTACCTGGTATATTTCTTCCTACCTGCGATTAAATTTTGCATCTCACCCTGGATTGGAATATCTCACCTATGATCCCAACTTCACTGACAAATATGGAGGAAAATATTTATGAAGAAATTCTCGAGGAAGATGAGTATGTTCACTTTTATGCTCAGGAGCTGCTAAGGCCCATTAGGATTATACATTTCATATTCGTTGCATTTATCGTCTAGACCGGAAGTACTGTTGAACTTGTAGATTATTAATCAAATATTTGATTTAAGTTCCTTGAACTAGTAAAATGCTAGAATCTTGCAATCGTAGAATATACATTGATAGAGAAGCCTACCAACTGAAGAAAATGAAAAGTGTGTGGTTGTGAGAAATCTTTTTGAGGTTCAGTTTGCATTCATTGAGAAATTATTTGTTTATGATTTCTGGATTACAAGGAGAAGGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275739" ref_strand="+" ref_description="SGN-E275739 [cLEN-18-P20]">
      <seq>gagaactagtctcgagtttttttttttttttttttcttaacagttcacacttctataataaaagaatagcgagtttttcgagatctaaaatcctagagttgggtactgatgtgggtaatataatgatcagtactcacacaattttctctctcattaaaagcaaagagagaaacaagtttcctttgaatgattaaaaacaaaaagaaaagcacaaaccacaaagctgcacatccaacggtatcagctgttctaacttccgacagcctcttcatcaaacaagataacttcaacagattcctccgtggcttgcttccaggaacctgtgctcaatataccaggatagggtttataagaatagctgtggcatgcacaaaggatcatcagagctatttagagatgtcaatttttaacatgataggctgaattgatatcagcgacagacttgacacaaacatgtttcatggaggcaccatttgggagtgtaaggtgtttgagcatgaaaaatcaattcttcaagtattagttacatgattaaaaatacacttagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106635" stop="29475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31382" g_stop="31350" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.606"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31349" i_stop="30293" i_length="1057">
            <donor d_prob="0.646" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30292" g_stop="29775" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="550" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E275739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31382" e_stop="31350"/>
          <exon e_start="30292" e_stop="29775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACTCATTCTACGGTTTTTTTTTCTAACAAGTATTCGCTTTTACCCATTTTTATTTATTCATTATTCATTTGTTACTTGTTTACTTAAGGAATAAATGATTTACAAAAATAATTAATGTTAATTGCAATAATCGAAAAAAATAATTAAGGAATAAATGATTTACAAAAATAATTAATGTTAATTGCAATAATCGAAAAAAATGTCTTATCTATTAATATGCTAAAGTAAAAACCTAAAAATGATAAACAATTAAGAATTTCTTTTACTTAAATTAATAAAAAAAATTGTGTCGAGGAAATTATGCAATGTTGGGTTATATTGATGTCCTTAAATAAATATAAACGACATTATTAGGTATTTTCTCTAATATGTTTTTCGAGAAAAATCTGCAATATTGAGTAATATTGTATCCCTAAAACAATCATAAGCGACATTACTGTATATTTTCCGAGTATGCTATCTCACTTCCCGTCAAATTGGATTGAACCAGCCACCCAGATAAGACTCTCACCGAAAGACATTCTTTTTTCGACAAAACAAATATGGTTGACTATACAGGGAAATTACTCCAAAAATAATCTCAAGAAGATGCTTATTGTGTAGTAATTATGATCTTTGAAGAGGTGTGGTGAACTTGTATAAAAGCTCAATTTGGAAATTGAAAAGAAACAGACCACTGTGTCATAAGCTCAAGGCTCTTGTGGGAGCATCGTACTCCAAGTCCCAAGTATGGAAAATAGAATTAACACTTCACAATCCTAAATCTTGAGCAAACAGTTATTTGATTCACACAGATACAACTGACCATCATAATAATGTTTCAGATAGGAAATAAAATTCTTGTATATATAATAAAAAAAGATCATCGGAGACAGATGACACACAAATGATTTAGGCAATAACACATCTCTTTATTTTGATCCAAAATATTCATATTTAACTTTCAAGTGTCTTTAGATCTTTTCTTTTGATTATTATAGACAAAACATATAATTTTAAAACACAAATCATTCACCTCTCAATTCCACACTTGATCGTTGAAGCATCAAGGTGAAACTGAAATTTGGTTATAATGGGCAAAACAAGCTTCTTAACAGTTCACACTTCTATAATAAAAGAATAGCGAGTTTTTCGAGATCTAAAATCCTAGAGTTGGGTACTGATGTGGGTAATATAATGATCAGTACTCACACAATTTTCTCTCTCATTAAAAGCAAAGAGAGAAACAAGTTTCCTTTGAATGATTAAAAACAAAAAGAAAAGCACAAACCACAAAGCTGCACATCCAACGGTATCAGCTGTTCTAACTTCCGACAGCCTCTTCATCAAACAAGATAACTTCAACAGATTCCTCCGTGGCTTGCTTCCAGGAACCTGTGCTCAATATACCAGGATAGGGTTTATAAGAATAGCTGTGGCATGCACAAAGGATCATCAGAGCTATTTAGAGATGTCAATTTTTAACATGATAGGCTGAATTGATATCAGCGACAGACTTGACACAAACATGTTTCATGGAGGCACCATTTGGGAGTGTAAGGTGTTTGAGCATGAAAAATCAATTCTTCAAGTATTAGTTACATGATTAAAAATACACTTAGTCA</genome_strand>
        <mrna_strand>GAGAACT-AGTCTCGAGTTTTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTAACAGTTCACACTTCTATAATAAAAGAATAGCGAGTTTTTCGAGATCTAAAATCCTAGAGTTGGGTACTGATGTGGGTAATATAATGATCAGTACTCACACAATTTTCTCTCTCATTAAAAGCAAAGAGAGAAACAAGTTTCCTTTGAATGATTAAAAACAAAAAGAAAAGCACAAACCACAAAGCTGCACATCCAACGGTATCAGCTGTTCTAACTTCCGACAGCCTCTTCATCAAACAAGATAACTTCAACAGATTCCTCCGTGGCTTGCTTCCAGGAACCTGTGCTCAATATACCAGGATAGGGTTTATAAGAATAGCTGTGGCATGCACAAAGGATCATCAGAGCTATTTAGAGATGTCAATTTTTAACATGATAGGCTGAATTGATATCAGCGACAGACTTGACACAAACATGTTTCATGGAGGCACCATTTGGGAGTGTAAGGTGTTTGAGCATGAAAAATCAATTCTTCAAGTATTAGTTACATGATTAAAAATACACTTAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316896" ref_strand="-" ref_description="SGN-E316896 [cTOA-27-M4]">
      <seq>cccaaatggtgcctccatgaaacatgtttgtgtcaagtctgtcgctgatatcaattcagcctatcatgttaaaaattgacatctctaaatagctctgatgatcctttgtgcatgccacagctattcttataaaccctatcctggtatattgagcacaggttcctggaagcaagccacggaggaatctgttgaagttatcttgtttgatgaagaggctgtcggaagttagaacagctgataccgttggatgtgcagctttgtggtttgtgcttttctttttgtttttaatcattcaaaggaaacttgtttctctctttgcttttaatgagagagaaaattgtgtgagtactgatcattatattacccacatcagtacccaactctaggattttagatctcgaaaaactcgctattcttttattatagaagtgtgaactgttaagaagcttgttttgcccattataaccaaatttcagtttcaccttgatgcttcaacgatcaagtgtggaattgagaggtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="29547" stop="30668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29847" g_stop="30363" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="540"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E316896" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316896" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29847" e_stop="30363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATGGTGCCTCCATGAAACATGTTTGTGTCAAGTCTGTCGCTGATATCAATTCAGCCTATCATGTTAAAAATTGACATCTCTAAATAGCTCTGATGATCCTTTGTGCATGCCACAGCTATTCTTATAAACCCTATCCTGGTATATTGAGCACAGGTTCCTGGAAGCAAGCCACGGAGGAATCTGTTGAAGTTATCTTGTTTGATGAAGAGGCTGTCGGAAGTTAGAACAGCTGATACCGTTGGATGTGCAGCTTTGTGGTTTGTGCTTTTCTTTTTGTTTTTAATCATTCAAAGGAAACTTGTTTCTCTCTTTGCTTTTAATGAGAGAGAAAATTGTGTGAGTACTGATCATTATATTACCCACATCAGTACCCAACTCTAGGATTTTAGATCTCGAAAAACTCGCTATTCTTTTATTATAGAAGTGTGAACTGTTAAGAAGCTTGTTTTGCCCATTATAACCAAATTTCAGTTTCACCTTGATGCTTCAACGATCAAGTGTGGAATTGAGAG</genome_strand>
        <mrna_strand>CCCAAATGGTGCCTCCATGAAACATGTTTGTGTCAAGTCTGTCGCTGATATCAATTCAGCCTATCATGTTAAAAATTGACATCTCTAAATAGCTCTGATGATCCTTTGTGCATGCCACAGCTATTCTTATAAACCCTATCCTGGTATATTGAGCACAGGTTCCTGGAAGCAAGCCACGGAGGAATCTGTTGAAGTTATCTTGTTTGATGAAGAGGCTGTCGGAAGTTAGAACAGCTGATACCGTTGGATGTGCAGCTTTGTGGTTTGTGCTTTTCTTTTTGTTTTTAATCATTCAAAGGAAACTTGTTTCTCTCTTTGCTTTTAATGAGAGAGAAAATTGTGTGAGTACTGATCATTATATTACCCACATCAGTACCCAACTCTAGGATTTTAGATCTCGAAAAACTCGCTATTCTTTTATTATAGAAGTGTGAACTGTTAAGAAGCTTGTTTTGCCCATTATAACCAAATTTCAGTTTCACCTTGATGCTTCAACGATCAAGTGTGGAATTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687924" ref_strand="+" ref_description="SGN-E687924 [T3_tus_81_K14]">
      <seq>aaaaaccaagaacttgttggttttttaagatgcgtgttttaaggtattcttagattattttgtaatacatgttttaagcgaaagtgtgaggctatttggagcgcagttcggtcagggtctgatcaattttccgatcaaaaaaataagatttttgcatgcattgttttcaagaacttgctttctgaagttacattgttattcttaggtgcatatgaaataaaagaaactgttgttttcaagaatatattgtgttgtcaaggaaattcaagaaatctattttttttagaagaattgtgttgtcattctctatatgtatcgtctagaccaatgattttgattgtttcttagagaatgggaattatatgttctctgattttgttatttgagatggcctttttgatctcattcgtattccaagtttgagtttcagcctgccttccaccgaatataaaatagaggcgagctgctgaggaaatggcaagtcttgctgttatgcaatttaatcacttagactagttgctcaaactcttcagtgagttcttatgttccttcatttgttacttctgatattgagggcatatgttttataccaaaattgatatacattttctcctcttagtatgatgttccattctagtattataactttttcttattcatatgaatatatatgacaacttatatctttttgccatgagatttgttttccctatagggctgttatttttatgtttgttattttttttaactagtgtactcctattttgaacctaacctagtttccgccaggtatctgttgctataaacattacgacctgctttgttaaggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="46637" stop="48069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46937" g_stop="47769" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E687924" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46937" e_stop="47769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAAGAACTTGTTGGTTTTTTAAGATGCGTGTTTTAAGGTATTCTTAGATTATTTTGTAATACATGTTTTAAGCGAAAGTGTGAGGCTATTTGGAGCGCAGTTCGGTCAGGGTCTGATCAATTTTCCGATCAAAAAAATAAGATTTTTGCATGCATTGTTTTCAAGAACTTGCTTTCTGAAGTTACATTGTTATTCTTAGGTGCATATGAAATAAAAGAAACTGTTGTTTTCAAGAATATATTGTGTTGTCAAGGAAATTCAAGAAATCTATTTTTTTTTAGAAGAATTGTGTTGTCATTCTCTATATGTATCGTCTAGACTAATGATTTTGATTGTTTCTTAGAGAATGGGAATTATATGTTCTCTGATTTTGTTATTTGAGATGGCCTTTTTGATCTCATTCGTATTCCAAGTTTGAGTTTCAGCCTGCCTTCCACCGAATATAAAATAGAGGCGAGCTGCTGAGGAAATGGCAAGTCTTGCTGTTATGCAATTTAATCACTTAGACTAGTTGCTCAAACTCTTCAGTGAGTTCTTATGTTCCTTCATTTGTTACTTCTGATATTGAGGGCATATGTTTTATACCAAAATTGATATACATTTTCTCCTCTTAGTATGATGTTCCATTCTAGTATTATAACTTTTTCTTATTCATATGAATATATATGACAACTTATATCTTTTTGCCATGAGATTTGTTTTCCCTATAGGGCTGTTATTTTTATGTTTGTTATTTTTTTTAACTAGTGTACTCCTATTTTGAACCTAACCTAGTTTCCGCCAGGTATCTGTTGCTATAGACATTACGACCTGCTATGTTAAGGTGG</genome_strand>
        <mrna_strand>AAAAACCAAGAACTTGTTGGTTTTTTAAGATGCGTGTTTTAAGGTATTCTTAGATTATTTTGTAATACATGTTTTAAGCGAAAGTGTGAGGCTATTTGGAGCGCAGTTCGGTCAGGGTCTGATCAATTTTCCGATCAAAAAAATAAGATTTTTGCATGCATTGTTTTCAAGAACTTGCTTTCTGAAGTTACATTGTTATTCTTAGGTGCATATGAAATAAAAGAAACTGTTGTTTTCAAGAATATATTGTGTTGTCAAGGAAATTCAAGAAATCTA-TTTTTTTTAGAAGAATTGTGTTGTCATTCTCTATATGTATCGTCTAGACCAATGATTTTGATTGTTTCTTAGAGAATGGGAATTATATGTTCTCTGATTTTGTTATTTGAGATGGCCTTTTTGATCTCATTCGTATTCCAAGTTTGAGTTTCAGCCTGCCTTCCACCGAATATAAAATAGAGGCGAGCTGCTGAGGAAATGGCAAGTCTTGCTGTTATGCAATTTAATCACTTAGACTAGTTGCTCAAACTCTTCAGTGAGTTCTTATGTTCCTTCATTTGTTACTTCTGATATTGAGGGCATATGTTTTATACCAAAATTGATATACATTTTCTCCTCTTAGTATGATGTTCCATTCTAGTATTATAACTTTTTCTTATTCATATGAATATATATGACAACTTATATCTTTTTGCCATGAGATTTGTTTTCCCTATAGGGCTGTTATTTTTATGTTTGTTATTTTTTTTAACTAGTGTACTCCTATTTTGAACCTAACCTAGTTTCCGCCAGGTATCTGTTGCTATAAACATTACGACCTGCTTTGTTAAGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328202" ref_strand="+" ref_description="SGN-E328202 [cTOC-21-G22]">
      <seq>aaaaccaagaacttgttggttttttaagatgcgtgttttaaggtattcttagattattttgtaatacatgttttaagcgaaagtgtgaggctatttggagcgcagttcggtcagggtctgatcaattttccgatcaaaaaaataagatttttgcatgcattgttttcaagaacttgctttctgaagttacattgttattcttaggtgcatatgaaataaaagaaactgttgttttcaagaatatattgtgttgtcaaggaaattcaagaaatctattttttttagaagaattgtgttgtcattctctatatgtatcgtctagactaatgattttgattgtttcttagagaatgggaattatatgttctctgattttgttatttgagatggcctttttgatctcattcgtattccaagtttgagtttcagcctgccttccaccgaatataaaatagaggcgagctgctgaggaaatggcaagtcttgctgttatgcaatttaatcacttagactagttgctcaaactcttcagtgagttcttatgttccttcatttgttacttctgatattgagggcatatgttttataccaaaattgatatacattttctcctcttagtatgatgttccattctagtattataacttttttctattcatatgaatatatatgacaacttatatctttttgccatgagatttgttttccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="46638" stop="47950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46938" g_stop="47650" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E328202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46938" e_stop="47650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAAGAACTTGTTGGTTTTTTAAGATGCGTGTTTTAAGGTATTCTTAGATTATTTTGTAATACATGTTTTAAGCGAAAGTGTGAGGCTATTTGGAGCGCAGTTCGGTCAGGGTCTGATCAATTTTCCGATCAAAAAAATAAGATTTTTGCATGCATTGTTTTCAAGAACTTGCTTTCTGAAGTTACATTGTTATTCTTAGGTGCATATGAAATAAAAGAAACTGTTGTTTTCAAGAATATATTGTGTTGTCAAGGAAATTCAAGAAATCTATTTTTTTTTAGAAGAATTGTGTTGTCATTCTCTATATGTATCGTCTAGACTAATGATTTTGATTGTTTCTTAGAGAATGGGAATTATATGTTCTCTGATTTTGTTATTTGAGATGGCCTTTTTGATCTCATTCGTATTCCAAGTTTGAGTTTCAGCCTGCCTTCCACCGAATATAAAATAGAGGCGAGCTGCTGAGGAAATGGCAAGTCTTGCTGTTATGCAATTTAATCACTTAGACTAGTTGCTCAAACTCTTCAGTGAGTTCTTATGTTCCTTCATTTGTTACTTCTGATATTGAGGGCATATGTTTTATACCAAAATTGATATACATTTTCTCCTCTTAGTATGATGTTCCATTCTAGTATTATAACTTTTTCTTATTCATATGAATATATATGACAACTTATATCTTTTTGCCATGAGATTTGTTTTCCCTAT</genome_strand>
        <mrna_strand>AAAACCAAGAACTTGTTGGTTTTTTAAGATGCGTGTTTTAAGGTATTCTTAGATTATTTTGTAATACATGTTTTAAGCGAAAGTGTGAGGCTATTTGGAGCGCAGTTCGGTCAGGGTCTGATCAATTTTCCGATCAAAAAAATAAGATTTTTGCATGCATTGTTTTCAAGAACTTGCTTTCTGAAGTTACATTGTTATTCTTAGGTGCATATGAAATAAAAGAAACTGTTGTTTTCAAGAATATATTGTGTTGTCAAGGAAATTCAAGAAATCTA-TTTTTTTTAGAAGAATTGTGTTGTCATTCTCTATATGTATCGTCTAGACTAATGATTTTGATTGTTTCTTAGAGAATGGGAATTATATGTTCTCTGATTTTGTTATTTGAGATGGCCTTTTTGATCTCATTCGTATTCCAAGTTTGAGTTTCAGCCTGCCTTCCACCGAATATAAAATAGAGGCGAGCTGCTGAGGAAATGGCAAGTCTTGCTGTTATGCAATTTAATCACTTAGACTAGTTGCTCAAACTCTTCAGTGAGTTCTTATGTTCCTTCATTTGTTACTTCTGATATTGAGGGCATATGTTTTATACCAAAATTGATATACATTTTCTCCTCTTAGTATGATGTTCCATTCTAGTATTATAACTTTTTTCTATTCATATGAATATATATGACAACTTATATCTTTTTGCCATGAGATTTGTTTTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358589" ref_strand="+" ref_description="SGN-E358589 [cLHT-22-H22]">
      <seq>tcctttaaaattggtgatattgaaagtgaggattacctgctttgcactcgtgctcctccttctccattgccgctattgtccagtgagtttggaattcatctaagttcccttaacaaattgaatgcaagtgatggttcattcaagctctcaggatacatttcaaatcctgatgtttacacagtgaaggtccttcaatatttctatatcaattcaagatttgtttccaaaggaccaatacataaattacttaataacacagctatgagttttgacagagcttctgacattgagaagcgaagtagatctcagatatatcctctgtttatgctgaacctaaactgtccaagatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="53928" stop="55059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54125" g_stop="54150" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54151" i_stop="54229" i_length="79">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54230" g_stop="54389" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="186" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54390" i_stop="54477" i_length="88">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.674" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54478" g_stop="54493" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="202" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54494" i_stop="54607" i_length="114">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54608" g_stop="54759" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="354" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E358589" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54125" e_stop="54150"/>
          <exon e_start="54230" e_stop="54389"/>
          <exon e_start="54478" e_stop="54493"/>
          <exon e_start="54608" e_stop="54759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTAAAATTGTTGATATTGAAAGGTCTGTCTTTATTATATCAGCTAACTTAAGTTAGGATATTTTCCGTCTGGTTTTTTAGATTTTGTGCATTTGCATGCAGTGAGGATGACCTGCTTTGCACTCGTGCTTCTCCTTCTCCATTGCCGCTATTGTCCAGTGAGTTTGGAATTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATTCAAGCTCTCAGGATACATTTCAGATCCTGATGTTTACACAGTGAAGGTATACAGGCCCAAATTGATGAATAAGAGGTGTGATAAGTTATCTTTTCTACATTCTGTTTCCCTAACAACCACTGCTCATTTTGCAGGTCCTTCAATATTTCTGTATCCACTTATTTCAGTATATTTTCCTGACCAAAGAAAAACGGAAGACTAATCTTTGGTTAACATTTGCCTGTTTGTACGGTGTTCTTGTTTTCCTTGACCTTCGTAATGCAGATATCAATTCAAGATTTGTTTCCAAAGGACCAATACATAAATTACTTAATAACACAGCTATGAGTTTTGACAGAGCTTCTGACATTGAGAAGCGAAGTAGATCTCAGATATATCCTCTGTTTATGCTGAACCTAAACTGTCCAAGATCTTTT</genome_strand>
        <mrna_strand>TCCTTTAAAATTGGTGATATTGAAAG...............................................................................TGAGGATTACCTGCTTTGCACTCGTGCTCCTCCTTCTCCATTGCCGCTATTGTCCAGTGAGTTTGGAATTCATCTAAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATTCAAGCTCTCAGGATACATTTCAAATCCTGATGTTTACACAGTGAAG........................................................................................GTCCTTCAATATTTCT..................................................................................................................ATATCAATTCAAGATTTGTTTCCAAAGGACCAATACATAAATTACTTAATAACACAGCTATGAGTTTTGACAGAGCTTCTGACATTGAGAAGCGAAGTAGATCTCAGATATATCCTCTGTTTATGCTGAACCTAAACTGTCCAAGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265908" ref_strand="+" ref_description="SGN-E265908 [cLEI-11-L18]">
      <seq>ctgaatcctattatgatggagatgatttgtcacatacacattctcatggtgaaaatcttactaattgtttgacaccacgagctatgctctcctcttgggtggatgggaattcgcataaatggaatgatgctgggagtcgaggtaacacacataagcttataaggaagaagagtagaagtcattcagctcctccattttatcaaggcaagaagaagttttttgccacgagcgagtcttcaaaaacggcagcaggaaataacattattaagactgttcatgatgtgccactcatgccagaaactagagcagtaagaagactgggggattctacagaagctatctgctcggagcttccacagcagtcatcccatcaatgtgagcaatcttccaccccaagatgaggtgatggtgtttattctgatgaaaggctaagtgttaaaatgaaacttgttgacatctggaatagcaaattacaaactcaaggagagtgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="58510" stop="59790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58810" g_stop="59106" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59107" i_stop="59195" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59196" g_stop="59325" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59326" i_stop="59423" i_length="98">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59424" g_stop="59490" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="494" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E265908" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58810" e_stop="59106"/>
          <exon e_start="59196" e_stop="59325"/>
          <exon e_start="59424" e_stop="59490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCCTATTATGATGGAGATGATTTGTCACATACACATTCTCATGGTGAAAATCTTACTAATTGTTTGACACCACGAGCTATGCTCTCCTCTTGGGTGGATGGGAATTCGCATAAATGGAATGATGCTGGGAGTCGAGGTAACACAGATAAGCTTATAAGGAAGAAGAGTAGAAGTCATTCAGCTCCTCCATTTTATCAAGGCAAGAAGAAGTTTTTTGCCACGAGCGAGTCTTCAAAAACGGCAGCAGGAAATAACATTATTAAGACTGTTCATGATGTGCCACTCATGCCAGGTAATTTGTCCTTGAGTGCTTGTTTGTTTTAATAATCAATGATGACAAAAAATTTGTGCAACTAATTAATGTTCTTGCCCATCGTGCAGAAACTAGAGCAGTAAGAAGACTGGGGGATTCTACAGAAGCTATCTGCTCGGAGCTTCCACAGCAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGTGGTGATGGTGTTTATTCTGATGAAAGGTACGATATCAATTTTTTGGGGAGGTTTAGGTCTCTTTCTGATATTATCTCAATCAAATATGTTAGTTACTCACACAACCTGATGTTTCTCTCTTCAGGCTAAGTGTTAAAATGAAACTTGTTGACATCTGGAATAGCAAATTACAAACTCAAGGAGAGTGCATA</genome_strand>
        <mrna_strand>CTGAATCCTATTATGATGGAGATGATTTGTCACATACACATTCTCATGGTGAAAATCTTACTAATTGTTTGACACCACGAGCTATGCTCTCCTCTTGGGTGGATGGGAATTCGCATAAATGGAATGATGCTGGGAGTCGAGGTAACACACATAAGCTTATAAGGAAGAAGAGTAGAAGTCATTCAGCTCCTCCATTTTATCAAGGCAAGAAGAAGTTTTTTGCCACGAGCGAGTCTTCAAAAACGGCAGCAGGAAATAACATTATTAAGACTGTTCATGATGTGCCACTCATGCCAG.........................................................................................AAACTAGAGCAGTAAGAAGACTGGGGGATTCTACAGAAGCTATCTGCTCGGAGCTTCCACAGCAGTCATCCCATCAATGTGAGCAATCTTCCACCCCAAGATGAGGTGATGGTGTTTATTCTGATGAAAG..................................................................................................GCTAAGTGTTAAAATGAAACTTGTTGACATCTGGAATAGCAAATTACAAACTCAAGGAGAGTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246796" ref_strand="+" ref_description="SGN-E246796 [cLEF-41-C7]">
      <seq>ggattctacagaagctatctgctcggagcttccacagcagtcatcccatcaatgtgatcaatcttccaccccaagttgtggtgatggtgtttattctgatgaaaggctaagtgttaaaatgaaacttgttgacatctggaatagcaaattacaaactcaaggagagtgcataagtacacgctatggggagttaaaagaagaatttgcaccaacaaaagaaactcaaagtatcttagattctgggacaaaatggagggacttctgtccagagattacaagcggcgctggaacaaagagtcgtaagaatcaggatactgtactcaatgtcacttctggcatattgcattttcttggtgattcattggttcctaataccattgatagaaactgcctgggtggtgccaaagtactccaacaggttgataagaagtttattccgattgtgggcggcacaacacttgctataattgatcagcatgctgcagacgagcgaattcgtttggaagaactgcgtgagaaggttctatctggacaaaaaagaacaacaacctatcttgattccgagcaagaattggtcatgcctgaaattggttatcaattattacacaactatgctgaccaaattcaaaactggggttggatctgcaacattcattctcaagcttcaaaatcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="58921" stop="61695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59221" g_stop="59325" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59326" i_stop="59423" i_length="98">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59424" g_stop="59518" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="200" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59519" i_stop="59925" i_length="407">
            <donor d_prob="0.640" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59926" g_stop="60002" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="277" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60003" i_stop="60093" i_length="91">
            <donor d_prob="0.192" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60094" g_stop="60291" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="475" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60292" i_stop="60996" i_length="705">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60997" g_stop="61041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="520" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61042" i_stop="61110" i_length="69">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.022" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61111" g_stop="61164" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="574" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61165" i_stop="61292" i_length="128">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61293" g_stop="61395" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="677" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E246796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59221" e_stop="59325"/>
          <exon e_start="59424" e_stop="59518"/>
          <exon e_start="59926" e_stop="60002"/>
          <exon e_start="60094" e_stop="60291"/>
          <exon e_start="60997" e_stop="61041"/>
          <exon e_start="61111" e_stop="61164"/>
          <exon e_start="61293" e_stop="61395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCTACAGAAGCTATCTGCTCGGAGCTTCCACAGCAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGTGGTGATGGTGTTTATTCTGATGAAAGGTACGATATCAATTTTTTGGGGAGGTTTAGGTCTCTTTCTGATATTATCTCAATCAAATATGTTAGTTACTCACACAACCTGATGTTTCTCTCTTCAGGCTAAGTGTTAAAATGAAACTTGTTGACATCTGGAATAGCAAATTACAAACTCAAGGAGAGTGCATAAGTACACGCTATGGGGAGTTAAAAGAAGGTAAACCATTCCTGCCATTTATTCCTGTAAAGGAAGGCCCTTGGCCTATCACAACCTCAAAAGTCAGATCATGAGGGGAGGATTGCCCAAGTCCATATAAATAGACCTCCAATCCATGCTCCAACTGATGCGGGACTCTAGCCCCCCACCCCCACCCCTCACTCTAACAGTTCCCGTATTGAATAAGAGCTTAATTTTTGTAGCGCATGTTTCAGTTAATTTGCTTGATTTCCTTCACCTACTTTTCAAGACTAAGCCTGCATTCTTACTAAACATGAAAGCATTAGAGATTACAGTGTCTCTTTCTCAGTGTCCTAGGCAACATAGTCTCTTTCAGATTCCATATTGCTTATGTGCTGATCTTGTGATAGAATTGTCATGCCTGACATTTTTATTCGAATTTTCAGAATTTGCACCAACAAAAGAAACTCAAAGTATCTTAGATTCTGGGACAAAATGGAGGGACTTCTGTCCAGAGATTACAGTGGAGTACTTTAGCTATATCTCAAATGTTTTTGTGACTTCTTCTCTGATTTGTTAAGATGACAGATTTCCTTTTCCAATATGAGATGCAGAGCGGCGCTGGAACAAAGAGTCGTAAGAATCAGGATACTGTACTCAATGTCACTTCTGGCATATTGCATTTTCTTGGTGATTCATTGGTTCCTAATACCATTGATAGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAGGTCCATTATGGTCTTTCTTGATTTTTCATGAATTTCCTTATAATGCATTTACTTTAGAATTGTTTATTTTAGGGATCTTTTGGTTAGACTCATTAGCCAATATTGATGTCAGCATAAACTTCTACGTACATAGTATAATAGTTGTTGGCCATGTAAGTAAAAGTAATATCTACATAACCATGTATCACTCAGTTATCCGCATGATAAAAAAGTAAGCTCGACATAACTAATGCAGCGTTTGGTTGGCGGTATTTAACCATTCATTATTAAGAGAACACATGTCAACAATGCATGGATATTAGTATTTACAGGGGAAAAATCCCTTTATAAAGTAGATTGTCCCTATATAGCATCACTCGGTTATTATTCACTGCATAAGAATCGCGATATTATTATTCACCGCATAATAGTTTTTACATTATTATTACAACATAAACATTCCCTGCATGACTAATACTTCAACCATGTAATGTCGTATTCTATTGCAATTAGTGATAGTACTGAAGAAAAGGAGAGTGATATAGGGTGCTTTATCTTTGTTTCATCACTTTCTGACCGTCTGGTTGAGTATATTCTTTTGTAGAAGCTGTGGCGCCCATGCCAAAATAAATGTCTGTCCCTTTTTACATAGTCAAGATATTATGATCTTTTGTTTGATTCTAGCATTTATCTTCATTGAGTGTTGCACATTGTCATATTCTACAGCATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAGGTAATGATTGTCTAAAAACTTATTGATGTGTCGTTTCAACGTGGAGTCGGTAACTTAGTGAATTATCAGGTTCTATCTGGACAAAAAAGAACAACAACCTATCTTGATTCCGAGCAAGAATTGGTACGTTATGGTCATCATATGTGATTTAGAGTTTATCTTTGCCTTGCGCCGCTTGGATTGTGGGGAAGTCTTGAAACCATTTATAATCGCTAACATTGATATTTGAGTCTTTGCCCATGCTTTTGCAGGTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTA</genome_strand>
        <mrna_strand>GGATTCTACAGAAGCTATCTGCTCGGAGCTTCCACAGCAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGTGGTGATGGTGTTTATTCTGATGAAAG..................................................................................................GCTAAGTGTTAAAATGAAACTTGTTGACATCTGGAATAGCAAATTACAAACTCAAGGAGAGTGCATAAGTACACGCTATGGGGAGTTAAAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCACCAACAAAAGAAACTCAAAGTATCTTAGATTCTGGGACAAAATGGAGGGACTTCTGTCCAGAGATTACA...........................................................................................AGCGGCGCTGGAACAAAGAGTCGTAAGAATCAGGATACTGTACTCAATGTCACTTCTGGCATATTGCATTTTCTTGGTGATTCATTGGTTCCTAATACCATTGATAGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAG.....................................................................GTTCTATCTGGACAAAAAAGAACAACAACCTATCTTGATTCCGAGCAAGAATTG................................................................................................................................GTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E596354" ref_strand="+" ref_description="SGN-E596354 [39646]">
      <seq>ctcaaggggagtgcataagtacacgctatggggagtcgaatgaagaatttgcaccaacaaaagaaactcaaagtatcttagattctgggacaaaatggaggggcttctgtccagagattacaagtggtactggaacagagagttttaagaatcaggatactatactcaacgtcacttctggcatattgcattttgttggtgattcattggttcctgataccattgataaaaactgcctggggggtgccaaagttctccaacaggttgataagaagtttattccgattgtgggtggcacaacacttgctataattgatcagcatgctgcagatgagcgaattcgtttggaagaactgcgtgagaaggttctatctggacaaaagaggtcaacaacctatcttgattccgagcaagaattggtcatgcctgaaattggttatcaattattacacaactatgctgaccaaattcaaaactggggttggatctgcaacattcattctcaagcttcaaaatcatttaccaggaacttgaatctgattcacaagcagccaaaatctgtcacacttcttgcgcttgctgacacagatggatcatcaatagtacccccatcagtgaatcgggtcctgaataacaaggcttgcaggagtaagttaatatttaattaatgaatttggagctaccttgatggctctctcacctccacccacccccacgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="59174" stop="62953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59474" g_stop="59518" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59519" i_stop="59925" i_length="407">
            <donor d_prob="0.640" d_score="0.91"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59926" g_stop="60002" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="122" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60003" i_stop="60093" i_length="91">
            <donor d_prob="0.192" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60094" g_stop="60291" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="320" r_length="198" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60292" i_stop="60996" i_length="705">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60997" g_stop="61041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="365" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61042" i_stop="61110" i_length="69">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.022" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61111" g_stop="61164" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="419" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61165" i_stop="61292" i_length="128">
            <donor d_prob="0.663" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61293" g_stop="61399" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="526" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61400" i_stop="61555" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61556" g_stop="61604" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="575" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61605" i_stop="62500" i_length="896">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62501" g_stop="62654" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="729" r_length="154" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E596354" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59474" e_stop="59518"/>
          <exon e_start="59926" e_stop="60002"/>
          <exon e_start="60094" e_stop="60291"/>
          <exon e_start="60997" e_stop="61041"/>
          <exon e_start="61111" e_stop="61164"/>
          <exon e_start="61293" e_stop="61399"/>
          <exon e_start="61556" e_stop="61604"/>
          <exon e_start="62501" e_stop="62654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGAGAGTGCATAAGTACACGCTATGGGGAGTTAAAAGAAGGTAAACCATTCCTGCCATTTATTCCTGTAAAGGAAGGCCCTTGGCCTATCACAACCTCAAAAGTCAGATCATGAGGGGAGGATTGCCCAAGTCCATATAAATAGACCTCCAATCCATGCTCCAACTGATGCGGGACTCTAGCCCCCCACCCCCACCCCTCACTCTAACAGTTCCCGTATTGAATAAGAGCTTAATTTTTGTAGCGCATGTTTCAGTTAATTTGCTTGATTTCCTTCACCTACTTTTCAAGACTAAGCCTGCATTCTTACTAAACATGAAAGCATTAGAGATTACAGTGTCTCTTTCTCAGTGTCCTAGGCAACATAGTCTCTTTCAGATTCCATATTGCTTATGTGCTGATCTTGTGATAGAATTGTCATGCCTGACATTTTTATTCGAATTTTCAGAATTTGCACCAACAAAAGAAACTCAAAGTATCTTAGATTCTGGGACAAAATGGAGGGACTTCTGTCCAGAGATTACAGTGGAGTACTTTAGCTATATCTCAAATGTTTTTGTGACTTCTTCTCTGATTTGTTAAGATGACAGATTTCCTTTTCCAATATGAGATGCAGAGCGGCGCTGGAACAAAGAGTCGTAAGAATCAGGATACTGTACTCAATGTCACTTCTGGCATATTGCATTTTCTTGGTGATTCATTGGTTCCTAATACCATTGATAGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAGGTCCATTATGGTCTTTCTTGATTTTTCATGAATTTCCTTATAATGCATTTACTTTAGAATTGTTTATTTTAGGGATCTTTTGGTTAGACTCATTAGCCAATATTGATGTCAGCATAAACTTCTACGTACATAGTATAATAGTTGTTGGCCATGTAAGTAAAAGTAATATCTACATAACCATGTATCACTCAGTTATCCGCATGATAAAAAAGTAAGCTCGACATAACTAATGCAGCGTTTGGTTGGCGGTATTTAACCATTCATTATTAAGAGAACACATGTCAACAATGCATGGATATTAGTATTTACAGGGGAAAAATCCCTTTATAAAGTAGATTGTCCCTATATAGCATCACTCGGTTATTATTCACTGCATAAGAATCGCGATATTATTATTCACCGCATAATAGTTTTTACATTATTATTACAACATAAACATTCCCTGCATGACTAATACTTCAACCATGTAATGTCGTATTCTATTGCAATTAGTGATAGTACTGAAGAAAAGGAGAGTGATATAGGGTGCTTTATCTTTGTTTCATCACTTTCTGACCGTCTGGTTGAGTATATTCTTTTGTAGAAGCTGTGGCGCCCATGCCAAAATAAATGTCTGTCCCTTTTTACATAGTCAAGATATTATGATCTTTTGTTTGATTCTAGCATTTATCTTCATTGAGTGTTGCACATTGTCATATTCTACAGCATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAGGTAATGATTGTCTAAAAACTTATTGATGTGTCGTTTCAACGTGGAGTCGGTAACTTAGTGAATTATCAGGTTCTATCTGGACAAAAAAGAACAACAACCTATCTTGATTCCGAGCAAGAATTGGTACGTTATGGTCATCATATGTGATTTAGAGTTTATCTTTGCCTTGCGCCGCTTGGATTGTGGGGAAGTCTTGAAACCATTTATAATCGCTAACATTGATATTTGAGTCTTTGCCCATGCTTTTGCAGGTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTACCAGGTAAGTTACGGATTTTTGTTTTAGATTTTTTTACAACCAGCCTATGGAACTTGAGAAAATTACTACTTACCAGAAATTTCATTCCACTAAATTTTGCAACATTCATTAAGGTTGAACATAACTCTAGCATGAAGTTATATGTTTTGGTTAAAGCAGGAACTTGAATCTGATTCACAAGCAGCAAACATCTGTCAGGCTTCTTGCGGTAACATTCTCTAATACTTGTCTTTGTCATATTATACATTCAGAAAGTTAAGTAGATGTAGACCATTTGCAAATCAGTCTTAGAAGGGAAAGATAATATATAGTATTGATTGTTGTTGTTAATACAGGATTAGGAAGTGACATCAACTATTAGGAAACAAGAATTGGGATTAGGAATTATCGGGAATAAAGCTAAGTTATATTGTGTAAATACACAAGGGCTGTGAGAGATTGCACACCAACATTCTCGAACCTTTTACTACACTTTATAGCTTATTAACTTTAGCATTCCTATTCCTTCCTCTGAAGTATATATGCCTGTCTAATTGTGGAAAACAAAGCATGATAAGCACAAGCACTTCTTCTCAGTCTTGTCAATCCATTCTGAGGTATCAATACAACAGTTTATATCTGTCCTGTGTTCCATCTTGTTTAAAGCAAGAAAGATTTTTGGGTTTAGGCTTCCACGGGTCATTTGTGCGCATTGTCTCTTAAGGTTCATTTTATGTTTTAATTGGGTTGATTATAGCTAGTGAAATATGAATTGTAACTTCTAAAAGGGAATATCTTTTTTGTTCTAATACCATCAGTAACAAGACAATATAGAGGTTTACACGTGTTTAAGGGAATACTGCACTAGCTAACGAGATACATTTGCACGTGTTTCACAATAAAATGGTTTTCTTGGTACTACAGGTTCCCTGTATTCTGGGTGTTAATCTAACAGATGTGGATCTGTTAGAATTTCTTCAACAGGTTAGTCCATTGACACTAGCTAGCTCTCATATTTCACTCCATTTAATCAACTCTAATCGTTCTCATGTGGAATCTTGCTTCTGTTCTTGCTTAAATGCTGTGTCATGTTCTCTAAATAATGTATTCGATTGCAACTCACAGCTTGCTGACACAGATGGATCATCAATAGTACCTCCATCAGTGAATCGTATCCTGAATAACAAGGCTTGCAGGAGTAAGTTAATATTTAATTTATGAATTTGGAGCTACCTTGAAGGCTCTCTCACCTCCACCCACCCCCACGTAAGAAAAAGAG</genome_strand>
        <mrna_strand>CTCAAGGGGAGTGCATAAGTACACGCTATGGGGAGTCGAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCACCAACAAAAGAAACTCAAAGTATCTTAGATTCTGGGACAAAATGGAGGGGCTTCTGTCCAGAGATTACA...........................................................................................AGTGGTACTGGAACAGAGAGTTTTAAGAATCAGGATACTATACTCAACGTCACTTCTGGCATATTGCATTTTGTTGGTGATTCATTGGTTCCTGATACCATTGATAAAAACTGCCTGGGGGGTGCCAAAGTTCTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGTGGCACAACACTTGCTATAATTGATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGCAGATGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAG.....................................................................GTTCTATCTGGACAAAAGAGGTCAACAACCTATCTTGATTCCGAGCAAGAATTG................................................................................................................................GTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTACCAG............................................................................................................................................................GAACTTGAATCTGATTCACAAGCAGCCAAAATCTGTCACACTTCTTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGACACAGATGGATCATCAATAGTACCCCCATCAGTGAATCGGGTCCTGAATAACAAGGCTTGCAGGAGTAAGTTAATATTTAATTAATGAATTTGGAGCTACCTTGATGGCTCTCTCACCTCCACCCACCCCCACGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356123" ref_strand="+" ref_description="SGN-E356123 [cTOS-20-C7]">
      <seq>agaaactgcctgggtggtgccaaagtactccaacaggttgataagaagtttattccgattgtgggcggcacaacacttgctataattgatcagcatgctgcagacgagcgaattcgtttggaagaactgcgtgagaagaacaacaacctatcttgattccgagcaagaattggtcatgcctgaaattggttatcaattattacacaactatgctgaccaaattcaaaactggggttggatctgcaacattcattctcaagcttcaaaatcatttaccaggaacttgaatctgattcacaagcagcaaacatctgtcaggcttcttgcggttccctgtattctgggtgttaatctaacagatgtggatctgttagaatttcttcaacagcttgctgacacagatggatcatcaatagtacctccatcagtgaatcgtatcctgaataacaaggcttgcaggagcgcaattatgtttggagatgcattgttgccttcagagtgttctctcattgttgaggagttgaagcagacttcattgtgttttcaatgtgctcatgggcggccaactactgtacctcttgtcaacttgggctctctgcatgagcagattgctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="59899" stop="63422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60199" g_stop="60291" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60292" i_stop="60996" i_length="705">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60997" g_stop="61041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="138" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61042" i_stop="61130" i_length="89">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61131" g_stop="61164" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="172" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61165" i_stop="61292" i_length="128">
            <donor d_prob="0.663" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61293" g_stop="61399" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="279" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61400" i_stop="61555" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61556" g_stop="61604" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="328" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61605" i_stop="62299" i_length="695">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62300" g_stop="62359" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="388" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62360" i_stop="62500" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62501" g_stop="62573" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="461" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62574" i_stop="62855" i_length="282">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62856" g_stop="62941" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="547" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62942" i_stop="63053" i_length="112">
            <donor d_prob="0.327" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63054" g_stop="63122" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="616" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E356123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60199" e_stop="60291"/>
          <exon e_start="60997" e_stop="61041"/>
          <exon e_start="61131" e_stop="61164"/>
          <exon e_start="61293" e_stop="61399"/>
          <exon e_start="61556" e_stop="61604"/>
          <exon e_start="62300" e_stop="62359"/>
          <exon e_start="62501" e_stop="62573"/>
          <exon e_start="62856" e_stop="62941"/>
          <exon e_start="63054" e_stop="63122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAGGTCCATTATGGTCTTTCTTGATTTTTCATGAATTTCCTTATAATGCATTTACTTTAGAATTGTTTATTTTAGGGATCTTTTGGTTAGACTCATTAGCCAATATTGATGTCAGCATAAACTTCTACGTACATAGTATAATAGTTGTTGGCCATGTAAGTAAAAGTAATATCTACATAACCATGTATCACTCAGTTATCCGCATGATAAAAAAGTAAGCTCGACATAACTAATGCAGCGTTTGGTTGGCGGTATTTAACCATTCATTATTAAGAGAACACATGTCAACAATGCATGGATATTAGTATTTACAGGGGAAAAATCCCTTTATAAAGTAGATTGTCCCTATATAGCATCACTCGGTTATTATTCACTGCATAAGAATCGCGATATTATTATTCACCGCATAATAGTTTTTACATTATTATTACAACATAAACATTCCCTGCATGACTAATACTTCAACCATGTAATGTCGTATTCTATTGCAATTAGTGATAGTACTGAAGAAAAGGAGAGTGATATAGGGTGCTTTATCTTTGTTTCATCACTTTCTGACCGTCTGGTTGAGTATATTCTTTTGTAGAAGCTGTGGCGCCCATGCCAAAATAAATGTCTGTCCCTTTTTACATAGTCAAGATATTATGATCTTTTGTTTGATTCTAGCATTTATCTTCATTGAGTGTTGCACATTGTCATATTCTACAGCATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAGGTAATGATTGTCTAAAAACTTATTGATGTGTCGTTTCAACGTGGAGTCGGTAACTTAGTGAATTATCAGGTTCTATCTGGACAAAAAAGAACAACAACCTATCTTGATTCCGAGCAAGAATTGGTACGTTATGGTCATCATATGTGATTTAGAGTTTATCTTTGCCTTGCGCCGCTTGGATTGTGGGGAAGTCTTGAAACCATTTATAATCGCTAACATTGATATTTGAGTCTTTGCCCATGCTTTTGCAGGTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTACCAGGTAAGTTACGGATTTTTGTTTTAGATTTTTTTACAACCAGCCTATGGAACTTGAGAAAATTACTACTTACCAGAAATTTCATTCCACTAAATTTTGCAACATTCATTAAGGTTGAACATAACTCTAGCATGAAGTTATATGTTTTGGTTAAAGCAGGAACTTGAATCTGATTCACAAGCAGCAAACATCTGTCAGGCTTCTTGCGGTAACATTCTCTAATACTTGTCTTTGTCATATTATACATTCAGAAAGTTAAGTAGATGTAGACCATTTGCAAATCAGTCTTAGAAGGGAAAGATAATATATAGTATTGATTGTTGTTGTTAATACAGGATTAGGAAGTGACATCAACTATTAGGAAACAAGAATTGGGATTAGGAATTATCGGGAATAAAGCTAAGTTATATTGTGTAAATACACAAGGGCTGTGAGAGATTGCACACCAACATTCTCGAACCTTTTACTACACTTTATAGCTTATTAACTTTAGCATTCCTATTCCTTCCTCTGAAGTATATATGCCTGTCTAATTGTGGAAAACAAAGCATGATAAGCACAAGCACTTCTTCTCAGTCTTGTCAATCCATTCTGAGGTATCAATACAACAGTTTATATCTGTCCTGTGTTCCATCTTGTTTAAAGCAAGAAAGATTTTTGGGTTTAGGCTTCCACGGGTCATTTGTGCGCATTGTCTCTTAAGGTTCATTTTATGTTTTAATTGGGTTGATTATAGCTAGTGAAATATGAATTGTAACTTCTAAAAGGGAATATCTTTTTTGTTCTAATACCATCAGTAACAAGACAATATAGAGGTTTACACGTGTTTAAGGGAATACTGCACTAGCTAACGAGATACATTTGCACGTGTTTCACAATAAAATGGTTTTCTTGGTACTACAGGTTCCCTGTATTCTGGGTGTTAATCTAACAGATGTGGATCTGTTAGAATTTCTTCAACAGGTTAGTCCATTGACACTAGCTAGCTCTCATATTTCACTCCATTTAATCAACTCTAATCGTTCTCATGTGGAATCTTGCTTCTGTTCTTGCTTAAATGCTGTGTCATGTTCTCTAAATAATGTATTCGATTGCAACTCACAGCTTGCTGACACAGATGGATCATCAATAGTACCTCCATCAGTGAATCGTATCCTGAATAACAAGGCTTGCAGGAGTAAGTTAATATTTAATTTATGAATTTGGAGCTACCTTGAAGGCTCTCTCACCTCCACCCACCCCCACGTAAGAAAAAGAGAGAGAAATGGGAATTAGGATCACTTAGATTTGAGATATTTCTCTTTACTTCTGATGTCTTCGATTTCATCTCCGATATGGATATAGTGGAACAGAGGAATGAGGATCGGCATAGCAGGCCAACTAATTCTGGGGGTGAAGCAAAATCGATGGATTGATTCCTGATTTGCCGTTCTATTTATTTATTTACTTATTTTTGTAGGCGCAATTATGTTTGGAGATGCATTGTTGCCTTCAGAGTGTTCTCTCATTGTTGAGGAGTTGAAGCAGACTTCATTGTGTTTTCAAGTGAGTAGAAAATTGCATTTCAGGAAATATCTGTATTAGAACTGCATTTGGTGGTATGTCTACAGGAGGAATTCCATATTATTAATGACTGTAATATCTTTTCATTTGTTAGTGTGCTCATGGGCGGCCAACTACTGTACCTCTTGTCAACTTGGGCTCTCTGCATGAGCAGATTGCTAAG</genome_strand>
        <mrna_strand>AGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAG.........................................................................................AACAACAACCTATCTTGATTCCGAGCAAGAATTG................................................................................................................................GTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTACCAG............................................................................................................................................................GAACTTGAATCTGATTCACAAGCAGCAAACATCTGTCAGGCTTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTGTATTCTGGGTGTTAATCTAACAGATGTGGATCTGTTAGAATTTCTTCAACAG.............................................................................................................................................CTTGCTGACACAGATGGATCATCAATAGTACCTCCATCAGTGAATCGTATCCTGAATAACAAGGCTTGCAGGA..........................................................................................................................................................................................................................................................................................GCGCAATTATGTTTGGAGATGCATTGTTGCCTTCAGAGTGTTCTCTCATTGTTGAGGAGTTGAAGCAGACTTCATTGTGTTTTCAA................................................................................................................TGTGCTCATGGGCGGCCAACTACTGTACCTCTTGTCAACTTGGGCTCTCTGCATGAGCAGATTGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694131" ref_strand="+" ref_description="SGN-E694131 [LH_Ea03C01](-)">
      <seq>agcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacccgctgcaagttatggccaaatgtccttctatggaatgtctaatccaagaatggaccagctaatgggaaagatggaagtgcctgggagctatcatccatatatacatgcagacgactacaacatgaccggctaactaccaatttggaaaccaagtttcagcaaattagaatgagactagaagccccaaaactctagccagagtttttgatcctactgtgtgtgaaaaaatgtacttatgaaccatgcttataggaactatatagtaaatagtattttcattttgatttctccgtttgctttgtaatttttacttttggaatgaagattttgaaagagcatgatgcagggctgtgctctgaatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="65966" stop="64111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65666" g_stop="65391" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64779" g_stop="64612" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="445" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64611" i_stop="64562" i_length="50">
            <donor d_prob="0.398" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64561" g_stop="64412" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="599" r_length="154" r_score="0.880"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64411" i_stop="64244" i_length="168">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.887" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64243" g_stop="64236" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="607" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E694131" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65666" e_stop="65391"/>
          <exon e_start="64779" e_stop="64612"/>
          <exon e_start="64561" e_stop="64412"/>
          <exon e_start="64243" e_stop="64236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAAGTATGTTTTTCTAGTTCCTATAACATCATTTTGTTTTTACCTCTGTACTGTAGTGCTCTAATATTTAGATATAAATGAAGTTGCTCTTCTGTCAAAATTTCTAAATATGAGCTCCATAGCCAAAATTGTTTCTGGTCTCGAATTCTCAAAATGTCATCGAAAGTGATAGACACACACCAGGTCCAGGTGATGGGAATTTCTGCATATTAGGAATCATAATGAATTATATGTACTTTCTGCTTTCATTCAATGTTTCACGAGGACATCAATAGCATTTGAAGACCTGCATTTTAAACTGCTATGTTTTTGTCAGAAAAACTTACTGTACCTTTAAAACTTCTCATGGAGTTAATGCATCACATTCACAATTGTCACCTTCTCTTGCACAAAAGAATTTGTCTTCAACTAAAACTTAATCCAAACTCGAAGCACCTGTAACAACGATGAGAGAACAGGACTGACAAAATCCATCTTTGGCCAACACCTAGATCAAAACGCAGCTTGAGTTGTTATTCAGGGTTCATATCGTTGATTCTAGGTAGCTGACCTATAATGGTTAGTCCTGTTCTTGATCTTTTTTATGCATTTGAGTGATAAAAATGGACATGCAGGAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAGTTTTTGATCCTACT-GTGCGTTAGCCACTGATTGATGATATTCTATTACAGGATGATTCTGTGTGT----GAAAAAATGTACTTATGGACCATGCTTATAGGAACTATATAGTAAATAGTATTTTCATTTTGATTTCTCCATTTGCTCTGTAATTTTTACTTTTGGAATGAAGATTTTGTCAAAACATGATGCAGGGTTGTGCTCTGAATTTCAAAGAAATGTTTCATACAATTCTTTTTTTAAAAGCACATTATAGGAGTTCAAAAAAAAAATAGAAAAAGTTGTTGACTTCTTGGTCCCTTCCCCCTATATCTTACCGACAAATGATCTATGCATTATATAAAAGAGGAAATTGAACATATAAATACAAACTATTCTTTTAACAGAAACCAAA</genome_strand>
        <mrna_strand>AGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCCGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACCAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCAGAGTTTTTGATCCTACTG..................................................TGTGTGAAAAAATGTACTTATGAACCATGCTTATAGGAACTATATAGTAAATAGTATTTTCATTTTGATTTCTCCGTTTGCTTTGTAATTTTTACTTTTGGAATGAAGATTTTGAAAGAGCATGATGCAGGGCTGTGCTCTGAATTTAAAAAAA........................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690291" ref_strand="+" ref_description="SGN-E690291 [LH_Ea03C01]">
      <seq>ctttgcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacccgctgcaagttatggccaaatgtccttctatggaatgtctaatccaagaatggaccagctaatgggaaagatggaagtgcctgggagctatcatccatatatacatgcagacgactacaacatgaccggctaactaccaatttggaaaccaagtttcagcaaattagaatgagactagaagccccaaaactctagccagagtttttgatcctactgtgtgtgaaaaaatgtacttatgaaccatgcttataggaactatatagtaaatagtattttcattttgatttctccatttgctttgtaatttttacttttggaatgaagattttgttaaagcatgatgcagggctgtgctctgaatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="65965" stop="64111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65669" g_stop="65391" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64779" g_stop="64612" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="448" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64611" i_stop="64562" i_length="50">
            <donor d_prob="0.398" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64561" g_stop="64407" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="607" r_length="159" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E690291" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65669" e_stop="65391"/>
          <exon e_start="64779" e_stop="64612"/>
          <exon e_start="64561" e_stop="64407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAAGTATGTTTTTCTAGTTCCTATAACATCATTTTGTTTTTACCTCTGTACTGTAGTGCTCTAATATTTAGATATAAATGAAGTTGCTCTTCTGTCAAAATTTCTAAATATGAGCTCCATAGCCAAAATTGTTTCTGGTCTCGAATTCTCAAAATGTCATCGAAAGTGATAGACACACACCAGGTCCAGGTGATGGGAATTTCTGCATATTAGGAATCATAATGAATTATATGTACTTTCTGCTTTCATTCAATGTTTCACGAGGACATCAATAGCATTTGAAGACCTGCATTTTAAACTGCTATGTTTTTGTCAGAAAAACTTACTGTACCTTTAAAACTTCTCATGGAGTTAATGCATCACATTCACAATTGTCACCTTCTCTTGCACAAAAGAATTTGTCTTCAACTAAAACTTAATCCAAACTCGAAGCACCTGTAACAACGATGAGAGAACAGGACTGACAAAATCCATCTTTGGCCAACACCTAGATCAAAACGCAGCTTGAGTTGTTATTCAGGGTTCATATCGTTGATTCTAGGTAGCTGACCTATAATGGTTAGTCCTGTTCTTGATCTTTTTTATGCATTTGAGTGATAAAAATGGACATGCAGGAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAGTTTTTGATCCTACT-GTGCGTTAGCCACTGATTGATGATATTCTATTACAGGATGATTCTGTGTGT----GAAAAAATGTACTTATGGACCATGCTTATAGGAACTATATAGTAAATAGTATTTTCATTTTGATTTCTCCATTTGCTCTGTAATTTTTACTTTTGGAATGAAGATTTTGTCAAAACATGATGCAGGGTTGTGCTCTGAATTTCAAAGAAATGTT</genome_strand>
        <mrna_strand>CTTTGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCCGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACCAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCAGAGTTTTTGATCCTACTG..................................................TGTGTGAAAAAATGTACTTATGAACCATGCTTATAGGAACTATATAGTAAATAGTATTTTCATTTTGATTTCTCCATTTGCTTTGTAATTTTTACTTTTGGAATGAAGATTTTGTTAAAGCATGATGCAGGGCTGTGCTCTGAATTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724694" ref_strand="+" ref_description="SGN-E724694 [FC24DF01]">
      <seq>gatggattgggaacacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacctgctgcaagttatggccaaatgtccttctatggaatgtctaatccaagaatggaccagctaatgggaaagatggaagtgcctgggagctatcatccatatatacatgcagacgactacaacatgaccggctaactaccaatttggaaactaagtttcagcaaattagaatgagactagaagccccaaaactctagccggaagttttgatcctactgtgcgttagccactgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67475" stop="64292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67176" g_stop="66962" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65391" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="739" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64779" g_stop="64592" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="927" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E724694" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67176" e_stop="66962"/>
          <exon e_start="65915" e_stop="65391"/>
          <exon e_start="64779" e_stop="64592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAAGTATGTTTTTCTAGTTCCTATAACATCATTTTGTTTTTACCTCTGTACTGTAGTGCTCTAATATTTAGATATAAATGAAGTTGCTCTTCTGTCAAAATTTCTAAATATGAGCTCCATAGCCAAAATTGTTTCTGGTCTCGAATTCTCAAAATGTCATCGAAAGTGATAGACACACACCAGGTCCAGGTGATGGGAATTTCTGCATATTAGGAATCATAATGAATTATATGTACTTTCTGCTTTCATTCAATGTTTCACGAGGACATCAATAGCATTTGAAGACCTGCATTTTAAACTGCTATGTTTTTGTCAGAAAAACTTACTGTACCTTTAAAACTTCTCATGGAGTTAATGCATCACATTCACAATTGTCACCTTCTCTTGCACAAAAGAATTTGTCTTCAACTAAAACTTAATCCAAACTCGAAGCACCTGTAACAACGATGAGAGAACAGGACTGACAAAATCCATCTTTGGCCAACACCTAGATCAAAACGCAGCTTGAGTTGTTATTCAGGGTTCATATCGTTGATTCTAGGTAGCTGACCTATAATGGTTAGTCCTGTTCTTGATCTTTTTTATGCATTTGAGTGATAAAAATGGACATGCAGGAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAGTTTTTGATCCTACTGTGCGTTAGCCACTGATTGA</genome_strand>
        <mrna_strand>GATGGATTGGG-AACACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAAGTTTTGATCCTACTGTGCGTTAGCCACTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729850" ref_strand="+" ref_description="SGN-E729850 [LA22BC02]">
      <seq>acgacaacatccaccggtgtcttggccggatcggactcccgaggaattgtccggaactggcgggggggccatgaccgtgatcgccctgacggatgaccaattaaaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacctgctgcaagttatggccaaatgtccttctatggaatgtctaatccaagaatggaccagctaatgggaaagatggaagtgcctgggagctatccatccatatataccatgcagacgactaccacatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67372" stop="64400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67158" g_stop="66962" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.822"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65391" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="722" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64779" g_stop="64700" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="804" r_length="82" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E729850" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67158" e_stop="66962"/>
          <exon e_start="65915" e_stop="65391"/>
          <exon e_start="64779" e_stop="64700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAAGTATGTTTTTCTAGTTCCTATAACATCATTTTGTTTTTACCTCTGTACTGTAGTGCTCTAATATTTAGATATAAATGAAGTTGCTCTTCTGTCAAAATTTCTAAATATGAGCTCCATAGCCAAAATTGTTTCTGGTCTCGAATTCTCAAAATGTCATCGAAAGTGATAGACACACACCAGGTCCAGGTGATGGGAATTTCTGCATATTAGGAATCATAATGAATTATATGTACTTTCTGCTTTCATTCAATGTTTCACGAGGACATCAATAGCATTTGAAGACCTGCATTTTAAACTGCTATGTTTTTGTCAGAAAAACTTACTGTACCTTTAAAACTTCTCATGGAGTTAATGCATCACATTCACAATTGTCACCTTCTCTTGCACAAAAGAATTTGTCTTCAACTAAAACTTAATCCAAACTCGAAGCACCTGTAACAACGATGAGAGAACAGGACTGACAAAATCCATCTTTGGCCAACACCTAGATCAAAACGCAGCTTGAGTTGTTATTCAGGGTTCATATCGTTGATTCTAGGTAGCTGACCTATAATGGTTAGTCCTGTTCTTGATCTTTTTTATGCATTTGAGTGATAAAAATGGACATGCAGGAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTAT-CATCCATATATA-CATGCAGACGACTACAACATGACC</genome_strand>
        <mrna_strand>ACGACAACATCCACCGGTGTCTTGGCCGGATCGGACTCCCGAGGAATTGTCCGGAACTGGCGGGGGGGCCATGACCGTGATCGCCCTGACGGATGACCAATTAAAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCCATCCATATATACCATGCAGACGACTACCACATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319178" ref_strand="+" ref_description="SGN-E319178 [cTOB-16-M6]">
      <seq>ctggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacctgctgcaagttatggccaaatgtccttctatggaatgtctaatccaagaatggaccagctaatgggaaagatggaagtgcctgggagctatcatccatatatacatgcagacgactacaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="66155" stop="64402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65855" g_stop="65391" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64779" g_stop="64702" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="543" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E319178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65855" e_stop="65391"/>
          <exon e_start="64779" e_stop="64702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAAGTATGTTTTTCTAGTTCCTATAACATCATTTTGTTTTTACCTCTGTACTGTAGTGCTCTAATATTTAGATATAAATGAAGTTGCTCTTCTGTCAAAATTTCTAAATATGAGCTCCATAGCCAAAATTGTTTCTGGTCTCGAATTCTCAAAATGTCATCGAAAGTGATAGACACACACCAGGTCCAGGTGATGGGAATTTCTGCATATTAGGAATCATAATGAATTATATGTACTTTCTGCTTTCATTCAATGTTTCACGAGGACATCAATAGCATTTGAAGACCTGCATTTTAAACTGCTATGTTTTTGTCAGAAAAACTTACTGTACCTTTAAAACTTCTCATGGAGTTAATGCATCACATTCACAATTGTCACCTTCTCTTGCACAAAAGAATTTGTCTTCAACTAAAACTTAATCCAAACTCGAAGCACCTGTAACAACGATGAGAGAACAGGACTGACAAAATCCATCTTTGGCCAACACCTAGATCAAAACGCAGCTTGAGTTGTTATTCAGGGTTCATATCGTTGATTCTAGGTAGCTGACCTATAATGGTTAGTCCTGTTCTTGATCTTTTTTATGCATTTGAGTGATAAAAATGGACATGCAGGAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGA</genome_strand>
        <mrna_strand>CTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589861" ref_strand="+" ref_description="SGN-E589861 [43445]">
      <seq>caacgcctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaagantaacttctgaattatctcaacatggacaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaccactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggcatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacctgctgcaagttatggccaaatgtccttctatggaatgtctaatccaagaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="66134" stop="65086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65834" g_stop="65391" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E589861" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65834" e_stop="65391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA</genome_strand>
        <mrna_strand>CAACGCCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATC-AAGA-NTAACTTCTGAATTATCTCAACATGGACAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACACCACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGCATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703374" ref_strand="+" ref_description="SGN-E703374 [FA21BC09]">
      <seq>ttcaaagatacaattttgtgatgacccttttaaggaattgactaaaacaaagaggaaaattatggattgggaaaaacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacctgctgcaagttatggccaaatgtccttctatggaatgtctaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67536" stop="65092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67236" g_stop="66962" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65392" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="799" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E703374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67236" e_stop="66962"/>
          <exon e_start="65915" e_stop="65392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCA</genome_strand>
        <mrna_strand>TTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727152" ref_strand="+" ref_description="SGN-E727152 [LA13DE09]">
      <seq>ttctggttaccctttttttactcactctctctgtttacttcaaagatacaattttgtgatgacccttttaaggaattgactaaaacaaagaggaaaattatggattgggaaaaacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggaatgcattcactagatccacgaaccagtaaacccgagcctatgtttccatcagacggtagttcaaaacctgctgcaagttatggccaaatgtccttctatggaatgtctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67574" stop="65095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67274" g_stop="66962" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65395" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="834" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E727152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67274" e_stop="66962"/>
          <exon e_start="65915" e_stop="65395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAAT</genome_strand>
        <mrna_strand>TTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400035" ref_strand="+" ref_description="SGN-E400035 [cSTC-4-E8]">
      <seq>caaccaaacagaagatcaaagatataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcatcaaacaccactgaatcagaggtggagacagaggttgagtcacccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttggctatgagaaccctgacgtgagctctggcatgcattcactaaatccacgaaccagtaaacccgagcctatgtttccatcagacggtagtttaaaacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="66077" stop="65135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65777" g_stop="65435" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E400035" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65777" e_stop="65435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGC</genome_strand>
        <mrna_strand>CAACCAAACAGAAGATCAAAGATATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCATCAAACACCACTGAATCAGAGGTGGAGACAGAGGTTGAGTCACCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGCATGCATTCACTAAATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTTAAAACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326710" ref_strand="+" ref_description="SGN-E326710 [cTOC-17-J14]">
      <seq>agtagttttcttctcttctctcccgcttttgctttactttctggttaccctttttttactcactctctctgtttacttcaaagatacaattttgtgatgacccttttaaggaattgactaaaacaaagaggaaaattatggattgggaaaaacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaacaaagccagaggatctgcagtcttctcacatgcctacttcaatggctgaagatcttgggctatgagaacctgacgtgagctctggaatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67612" stop="65199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67312" g_stop="66962" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65499" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="767" r_length="416" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E326710" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67312" e_stop="66962"/>
          <exon e_start="65915" e_stop="65499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTT-GGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATT</genome_strand>
        <mrna_strand>AGTAGTTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAG-AAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGGCTATGAGAA-CCTGACGTGAGCTCTGGAATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339698" ref_strand="+" ref_description="SGN-E339698 [cTOE-16-A12]">
      <seq>gcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67458" stop="65254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67158" g_stop="66962" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65554" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="559" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E339698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67158" e_stop="66962"/>
          <exon e_start="65915" e_stop="65554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACT</genome_strand>
        <mrna_strand>GCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317556" ref_strand="+" ref_description="SGN-E317556 [cTOB-17-K7]">
      <seq>accggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaacactgaatcagaggtggagacagaggttgagtcgcccaatgaaaagaaaacaaagccagaggatctgcagtcttctcacatgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67446" stop="65256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67146" g_stop="66962" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65556" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="545" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E317556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67146" e_stop="66962"/>
          <exon e_start="65915" e_stop="65556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTA</genome_strand>
        <mrna_strand>ACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444218" ref_strand="+" ref_description="SGN-E444218 [cSTA-42-I15]">
      <seq>ctttttttactcactctctctgtttacttcaactctcagaaacagatacaattttgtgatgacccttttaaggaattgactaaaacaagaggaaattatggagtgggaaaaacagcagcagcagcagcagccggtgtcggcgccgcagcagacggtggaggaattgaacggagcagttagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacaacttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatttgtactgcgatccactagtgacatccgctggccataaaatcactggtagacaacgctggactccaacgcctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagatataacttctgaattatctcaacatggacaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgctcgatcaaaaaggaagcaacaggttgcagcaacaaacaccactgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67563" stop="65333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67229" g_stop="66962" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="314" r_length="269" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65633" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="597" r_length="283" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E444218" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67229" e_stop="66962"/>
          <exon e_start="65915" e_stop="65633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGC--CA-CCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATC</genome_strand>
        <mrna_strand>ATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAAC-AAGAGG-AAATTATGGAGTGGGAAAAACAGCAGCAGCAGCAGCAGCCGGTGTCGGCGCCGCAGCAGACGGTGGAGGAATTGAACGGAGCAGTTAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAACTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATTTGTACTGCGATCCACTAGTGACATCCGCTGGCCATAAAATCACTGGTAGACAACGCTGGACTCCAACGCCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGATATAACTTCTGAATTATCTCAACATGGACAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACACCACTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698684" ref_strand="+" ref_description="SGN-E698684 [FA07BA10]">
      <seq>tttttactcactctctctgtttacttcaaagatacaattttgtgatgacccttttaaggaattgactaaaacaaagaggaaaattatggattgggaaaaacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagcttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctgggaaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacacctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctgaaacaaatgtgtataattggtttcaaaataggcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67560" stop="65381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67260" g_stop="66962" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65681" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="534" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E698684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67260" e_stop="66962"/>
          <exon e_start="65915" e_stop="65681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGC</genome_strand>
        <mrna_strand>TTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366027" ref_strand="+" ref_description="SGN-E366027 [cLPT-11-L16]">
      <seq>ttttcttctcttctctcccgcttttgctttactttctggttaccctttttttactcactctctctgtttacttcaaagatacaattttgtgatgacccttttaaggaattgactaaaacaaagaggaaaattatggattgggaaaaacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacgggacagttagtggtgggatgtttgtgaaagtgatgacggatgagcaaatggaagttttaaggaagcaaatcgctgtttatgcaactatttgtgaacaacttgttgatttgcataaatccatggcttcacaacacgatcttgctggagccaggctggggaatctgtactgcgatccactggtgacatctgctggtcataaaatcactggtagacaacgctggactccaacgcctatgcaacttcagattcttgagcgcatatttgaacaaggcaatggaactccaaccaaacagaagatcaaagagataacttctgaattatctcaacatggccaaatttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67607" stop="65417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67307" g_stop="66962" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65915" g_stop="65717" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="545" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E366027" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67307" e_stop="66962"/>
          <exon e_start="65915" e_stop="65717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTGGTTCGTCTATTTTTATATTTATATTTGGTCTTGATATCTAATTGGGCCTTTTTTTTTTCTGTTAATTTTATCAATTTTTGTGTCTTTTTTAGCTATGGTTTCTCTATTCTGTTTCTTTTGGTTGATTTTGTCTTTTTTTTTTCCTCTAGGAATTGAAGTTCAAAAACTTGAGAGAAAATAGAAAAATGAAATCATTTCATAATTCTTACCTTTTCTGTTAATTTTGGTAAAAATAAATTCAAATAGTTCTATTCAGCTTAAATGTCTCAAAGATTCAAAGTTTTGTGTTTCCTTTTGGTATAGAATTTCATTGTATTGATTCTCCTTAAGTTTTTGAATTTTTTTACTTTTGGTATAGAATCTCATTTGATTCTTTAGTTTTATTTCTTACTCTACCCATCCAAATATAGTTCCCTCTAGGTTATCTCTCCCACATAATCCTTTGAGAATCCTGTAACGCTATGTGCGGGGTCCGGGGAAGGACCGAACTGTTAGGGTCTATTGTACGTAATTTTACCATGCATTAGCTTGAACCCTTGATCTCCCCGTAACATGACAACAACTTTACTAGTTAGGCGACTTGTAAAAAATGTAGTAGTGAAACTTGCCAGTAACATGGAAGCTGGAAATCTTTCAATCCATGACTGTATGCTGAAATCTTTAATTGATTGCAATGTTCAATGACAGGTGGATTTTGCAGACTTTAGGTTTCATATTTTTATTCGATGAAATCGATTCAAAGGAAACCCAATATAACCTCCTCCTTTTGAGTGGTTCTTCAAATTTTTTGTATATGATAAACGACCATTTCCATGTTTCAAGATACTAGTATTGGTTTCATTCGACTTTAGAGTGAATGATTGTACTGTTAACCATGATGCAAGAAGCTGGAGGACGATAGTTTTCTCAGTTAGACTTATTAATGGTCTTAATTTGTTGTGCTTAACATCCATATGTTCAACTTGATGTGTTTGTAGTGATCGCTAATATTACTTTCTGAATTTGAATTCATCTAATGTGAGCAAAATCTGTACCTGCAACCTCAGGAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGA</genome_strand>
        <mrna_strand>TTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGGACAGTTAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCAACTATTTGTGAACAACTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGGCTGGGGAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACGCCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341211" ref_strand="+" ref_description="SGN-E341211 [cTOE-22-M15]">
      <seq>ttttcttctcttctctcccgcttttgctttactttctggttaccctttttttactcactctctctgtttacttcaaagatacaattttgtgatgacccttttaaggaattgactaaaacaaagaggaaaattatggattgcgaaaaacagcagcagcagccaccggtgtcggcgccgcagcagacggcggaggaattgaacggaacagtcagtggtgggatgtttgtgaaagtgatgactgatgagcaaatggaagttttaaggaagcaaatcgctgtttatgctactatttgtgaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="67607" stop="66707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67307" g_stop="67007" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E341211" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67307" e_stop="67007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGC</genome_strand>
        <mrna_strand>TTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGCGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACTGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312334" ref_strand="+" ref_description="SGN-E312334 [cTOA-5-K9]">
      <seq>ctcgtgccgaagaactgttacgggtacgaggctccaatgaagaaactgatcagtgaagaaatagccagaagaccaaacacaggatataatgcacctagtgtggtagcacgtctaatgggagttgatacgttaccattagatacaagaccattaccaaagcatgtagagaaaaagaatgaaatgaaggatgggaacccttctaaagaggaatggttgagaaaggtttccattgatcatgcaacccagtcctccagacagaaaatctcaattccctttaaccatgatgaatcatgtgactctgaccgacagattgatagccgaaaaccaaacaaatataaacctcgtgaacatcctcaggaggaggaactacagaagttcaaaaaagattttgaagcatggcaagcagcaaggttcaaggaatgttcgaagtttgttgaacatggcaccagtccaagtcaatggttagcacagcaaagcctgaacaaggaaaagttgactctttatgcaaattcaatgagaaccgcagcttctgagaaacctacagagcttagagggcatacagtagcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="77168" stop="76007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76877" g_stop="76307" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E312334" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76877" e_stop="76307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCAAGAGAAGAACTGTTACGGGTACGAGGCTCCAATGAAGAAACTGATCAGTGAAGAAATAGCCAGAAGACCAAACACAGGATATAATGCACCTAGTGTGGTAGCACGTCTAATGGGAGTTGATACGTTACCATTAGATACAAGACCATTACCAAAGCATGTAGAGAAAAAGAATGAAATGAAGGATGGGAACCCTTCTAAAGAGGAATGGTTGAGAAAGGTTTCCATTGATCATGCAACCCAGTCCTCCAGACAGAAAATCTCAATTCCCTTTAACCATGATGAATCATGTGACTCTGACCGACAGATTGATAGCCGAAAACCAAACAAATATAAACCTCGTGAACATCCTCAGGAGGAGGAACTACAGAAGTTCAAAAAAGATTTTGAAGCATGGCAAGCAGCAAGGTTCAAGGAATGTTCGAAGTTTGTTGAACATGGCACCAGTCCAAGTCAATGGTTAGCACAGCAAAGCCTGAACAAGGAAAAGTTGACTCTTTATGCAAATTCAATGAGAACCGCAGCTTCTGAGAAACCTACAGAGCTTAGAGGGCATACAGTAGCAGTG</genome_strand>
        <mrna_strand>CTCG-TGCCGAAGAACTGTTACGGGTACGAGGCTCCAATGAAGAAACTGATCAGTGAAGAAATAGCCAGAAGACCAAACACAGGATATAATGCACCTAGTGTGGTAGCACGTCTAATGGGAGTTGATACGTTACCATTAGATACAAGACCATTACCAAAGCATGTAGAGAAAAAGAATGAAATGAAGGATGGGAACCCTTCTAAAGAGGAATGGTTGAGAAAGGTTTCCATTGATCATGCAACCCAGTCCTCCAGACAGAAAATCTCAATTCCCTTTAACCATGATGAATCATGTGACTCTGACCGACAGATTGATAGCCGAAAACCAAACAAATATAAACCTCGTGAACATCCTCAGGAGGAGGAACTACAGAAGTTCAAAAAAGATTTTGAAGCATGGCAAGCAGCAAGGTTCAAGGAATGTTCGAAGTTTGTTGAACATGGCACCAGTCCAAGTCAATGGTTAGCACAGCAAAGCCTGAACAAGGAAAAGTTGACTCTTTATGCAAATTCAATGAGAACCGCAGCTTCTGAGAAACCTACAGAGCTTAGAGGGCATACAGTAGCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736089" ref_strand="+" ref_description="SGN-E736089 [LC04BC01]">
      <seq>cctttttcttcttcttcttgaaaaagaactaaacgtcaactccagctcttacaaacagcttttctctctgtcaatacacatacattcctcttctttttttttaataataataattttctctgtttcttcaaacaagcttgagttttatgatgaaaactttttctatggttattgaaagttgaaatgatgggtgtggactaaacatggagttactagctctttaggattattgtgcaagttgggattttctgctgcatgaaaagcttgttggatctcattgattttgatcaaggagggatggcaaggaagtttctttcacaaaaaagacatggtggtgtcgatactcctaaaaatagcttggagcttcctgttgaagcgtctcaatggttctatgctggaggggacaaagcacagtgcgcttatcaaatgattgattggcaagagaagaactgttacgggtacaaggctccaatgaagaaactgatcagtgaagaaatagccagaagaccaaacacaggatataatgcacctagtgtggtagcacgtctaatgggagttgatacgttaccattagatacaagaccattaccaaagcatgtagagaaaaagaatgaaatgaaggatgggaacccttctaaagaggaatggttgaaaaaggtttccattgatcatgcaacccagtcctccaaacagaaaatctcaattccctttaaccatgatgaatcatgtgactctgaccgacagattgatagccgaaaaccaaacaaatataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="79273" stop="76237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78973" g_stop="78784" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78783" i_stop="78033" i_length="751">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78032" g_stop="77888" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="334" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77887" i_stop="77477" i_length="411">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77476" g_stop="77397" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="414" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77396" i_stop="76898" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76897" g_stop="76537" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="775" r_length="361" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E736089" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78973" e_stop="78784"/>
          <exon e_start="78032" e_stop="77888"/>
          <exon e_start="77476" e_stop="77397"/>
          <exon e_start="76897" e_stop="76537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTTCTTCTTCTTCTTGAAAAAAAAACTAAACGTCAACTCCAGCTCTTACAAACAGCTTTTCTCTCTGTCAATACACATACATTCCTCTTCTTTTTTTTTAATAATAATAATTTTCTCTGTTTCTTCAAACAAGCTTGAGTTTTATGATGAAAACTTTTTCTATGGTTATTGAAAGTTGAAATGATGGTTTGTTCTTTTTTTTTCTCTCTCTCATTGTTTTCATGTTTCTTGGATCTTTGATCACGAGGAAAGATAAAAATTTGATTTTGACTTGTACCCTTCTCTCCTCTGCTAGTTTTTCTTGAAAAATGGGATTTTTATAACATGGAATGGCTGATTTAATGTTGAAATTTGTTTAACAATGTCTAATTTTGTAGTGGGGTTGAATCTTAAATGGTTTATAAGTTTGTTCTATGGCTGCTACTTTGTGTTGTCTAGTAATCCCTTTTTTTTTTTGTTTCATTCTATCTGATGAAGTTTGTTTGCTGAGTTATGAATGCCTAATGTTTACTAGATCAGTCCAGCAATTAACAAAATAATTACTCTTTGCTGAATTAGATCAGGAGTAAGAAATTCCCTCATATATTCCACTTTCAAGAGCAAAACCATTTTATTAGTACTACAATTTGTTTATTTTTTTGGCTAAATTTACATATAGATTTTGAGGTCATTTGTCATCATAGAGAATTTTCTCTGTTTTTTTTTTTAATGATTTTGTGGAAAAAAATCTGATTGGGGCTTTCAAGAATAGTAGTGCCTATTGATTTATATGAATTGAATTTGTTTTCTACCTTTAAATGTTATTAGACTATGACAAGAAAGGTTCAGTTTTATGAATATGATATCTGTTGGTTATACTTCAGAAAAAATGCTATATGAATCTTCTTTTTTTCTTTCTGCTGGGAAGAATCGTCAATTGATATTATTGTGTCTGCAGGGTGTGGACTAGACATGGAGTTACTAGCTCTTTAGGATTATTGTGCAAGTTGGGATTTTCTGCTGCATGAGAAGCTTGTTGGATCTCATTGATTTTGATCAAGGAGGGATGGCAAGGAAGTTTCTTTCACAAAAAAGACATGGTGGTAAGTGCTTTTGTTCTCTAGTTGCATCACGAGAATGATATTGTCGAAGCTAGTGATGTTGGCAAGATGTTAATTAGTTGCTCAAATTAACAGCCTTTTAATAAATGTTTGATGAATTTTGCCTATGATTTGTCATGAGGAATGCACCCTTTGAAGGGTCAGGGGGAATCCTGAATTAGTTTACTTCATTATGCTCAACATCACTCTTAGCTTAGTCATTCAAGTCCTGTTACGCAATGATTTCTGCTTCTACTTAAGCAACTATGACAGTACGAAGAATTTGTTAGATTACCTGTTATATATAAGCACAACATTAGCATTTAATTGGGACAGAGGGGATATAGATATATCTTCTTCTTTTTTCCCCCAAAACCAACAGAAAATATGATGATTCATTCATCTAATGTGCAGGTGTCGATACTCCTAGAAATAGCTTGGAGCTTCCTGTTGAAGCGTCTCAATGGTTCTATGCTGGAGGGGACAAAGCACAGGTAAACGTTTTATTATGTCATGTGCAAATTCTTTTATCTGATGTTGGAATACTCTTAGCACATCGAGCACTGAAAGACAGGATTAAGACATTTACATTTGATAAAATGCTATAACCTGAAGTGTAGGATTTCTCCTGCCTCATGTATCCTTGTAACTGTGGTCTTATAGAGTGTGGCAAATTTTGCAAGGTCAGGGTGACAAAGAAATCCACAGCTGCTACTTGAAATTTGCTTCGATGTGCAGCAGTTGTACCATTATCTATACCTGTCTAGACCTGGAAAACACAGGCATTTCTTAACTAAAATAATATTGTGCATTATGTATTTTCTTGTAATCTCTACCTAGTTTGGTTTTTCAACTTCTGGCCTCGCAAAATCTTCATGTATTATTTGGTACACTGCAAAAATTAAATCAGGCCTCTGAATTGTCCTGAGAGTTGGAAATGATTCCTTCTTACTTGTTTGGTCCTATGCAAACTCATTCCATATTTGAATGCAGTGCGCTTATCAGATGATTGATTGGCAAGAGAAGAACTGTTACGGGTACGAGGCTCCAATGAAGAAACTGATCAGTGAAGAAATAGCCAGAAGACCAAACACAGGATATAATGCACCTAGTGTGGTAGCACGTCTAATGGGAGTTGATACGTTACCATTAGATACAAGACCATTACCAAAGCATGTAGAGAAAAAGAATGAAATGAAGGATGGGAACCCTTCTAAAGAGGAATGGTTGAGAAAGGTTTCCATTGATCATGCAACCCAGTCCTCCAGACAGAAAATCTCAATTCCCTTTAACCATGATGAATCATGTGACTCTGACCGACAGATTGATAGCCGAAAACCAAACAAATATAAAC</genome_strand>
        <mrna_strand>CCTTTTTCTTCTTCTTCTTG-AAAAAGAACTAAACGTCAACTCCAGCTCTTACAAACAGCTTTTCTCTCTGTCAATACACATACATTCCTCTTCTTTTTTTTTAATAATAATAATTTTCTCTGTTTCTTCAAACAAGCTTGAGTTTTATGATGAAAACTTTTTCTATGGTTATTGAAAGTTGAAATGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGACTAAACATGGAGTTACTAGCTCTTTAGGATTATTGTGCAAGTTGGGATTTTCTGCTGCATGAAAAGCTTGTTGGATCTCATTGATTTTGATCAAGGAGGGATGGCAAGGAAGTTTCTTTCACAAAAAAGACATGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGATACTCCTAAAAATAGCTTGGAGCTTCCTGTTGAAGCGTCTCAATGGTTCTATGCTGGAGGGGACAAAGCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTTATCAAATGATTGATTGGCAAGAGAAGAACTGTTACGGGTACAAGGCTCCAATGAAGAAACTGATCAGTGAAGAAATAGCCAGAAGACCAAACACAGGATATAATGCACCTAGTGTGGTAGCACGTCTAATGGGAGTTGATACGTTACCATTAGATACAAGACCATTACCAAAGCATGTAGAGAAAAAGAATGAAATGAAGGATGGGAACCCTTCTAAAGAGGAATGGTTGAAAAAGGTTTCCATTGATCATGCAACCCAGTCCTCCAAACAGAAAATCTCAATTCCCTTTAACCATGATGAATCATGTGACTCTGACCGACAGATTGATAGCCGAAAACCAAACAAATATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455525" ref_strand="+" ref_description="SGN-E455525 [cSTS-26-F9]">
      <seq>cagagcttcgatctatacagttccggcgattttccggcagaataagtaatatttatgagtatgttgaagaagcttgtcgagaaggcttcttttgtcaagaagcctcgaggagatttagatggtctgaagcctgatgatgtaaatcctcggtgtgtttttcattatggcattccatcaggatctgtgctatcggcacatgactctatccaaaaaattgttgcccttgctaccaaagatggacggatcaaattatttgggaaagatagcacgcaagctctgttggtatcatcagagacggtgtcaagcaaatttttgcagtttatggagaaccaaggcctcctcattaacataaactccaataaccaaatagaggtctgggatgtagaacaaaggtatttgtgtaatgttcataacttcgaccgggatatcacatcttttacactcatacagcacactccctacctgtatcttggagactcgtcaggacatgtttcagttatgaaggttgttaaagaaccctgtaatatagagaaaatgaaatattgtatccccctttcagcatctcatggcctatcaaatgaagtttcaggggatgctgctgtagcccatatactacctcaacctgctgcagaaactaagagggtggctattgtttacaaagatggtgttataacactatggtcaattcgtgaaagtacagcaatctttataccgggggggagtcctctgcaatctatgggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="87876" stop="96503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88176" g_stop="88277" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88278" i_stop="89469" i_length="1192">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89470" g_stop="89600" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="233" r_length="131" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89601" i_stop="94146" i_length="4546">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94147" g_stop="94231" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="318" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94232" i_stop="94371" i_length="140">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94372" g_stop="94425" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="372" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94426" i_stop="94604" i_length="179">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94605" g_stop="94696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="94780" i_length="84">
            <donor d_prob="0.882" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94781" g_stop="94884" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="568" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94885" i_stop="95301" i_length="417">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95302" g_stop="95374" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="641" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95375" i_stop="96101" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96102" g_stop="96203" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="743" r_length="102" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E455525" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88176" e_stop="88277"/>
          <exon e_start="89470" e_stop="89600"/>
          <exon e_start="94147" e_stop="94231"/>
          <exon e_start="94372" e_stop="94425"/>
          <exon e_start="94605" e_stop="94696"/>
          <exon e_start="94781" e_stop="94884"/>
          <exon e_start="95302" e_stop="95374"/>
          <exon e_start="96102" e_stop="96203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCCTCGATCTGTACGATTCCGGCGATTTTCCGGCAGAATAAGTAATATTTATGAGTATGTTGAAGAAGCTTGTTGAGAAGGCTTCTTTTGTCAAGAAGGTCAGTCATGATCTCTCTGTTTTAACTCTTTACCTTCTTTTTTTGGATTTGTACTTTCGATTCACTTCAAATTCGAACTTATAAAGTGTTTCAGTAATTAAATTTCATCCTGTCATTGATCGGAAATGTCGATTTTACATTTCTGATTCGTGTTAATCTTACTGATTTCTTCTAGTTTTCTGTTTTAATTTCAAGTTAATAGAACTGGATTTGGTGTGTTAGTGTTAAGAATAATGAATTTATTGAAATTTGAATTGATTGATCTCGATAGTCGTGAAGCATTATGTGATCACGCAATATTAATGCTGAGCTTTAGAGTAGTAGTACTACACTTTTGTCGATCTTAAGCGTTTAGATAAGAATATCAGTATCACCTTTTCGAGATACTGTAACAGTAACACTGCTAGTTTTAAGAATTTTTTGAAATTGATATCCACAATATCCTCTGTATTTGACAATGAAAATATGAGGAACGAATCATTTACTTGGGTGAGTATTAAGAATATGATTAAATGAAAACCGTTTCTATAACATTCAATAATATGTGCTACTTTATAGTTTCTATTTAAAAATTTGGCTAAAAAATGTCATTAAAATACAAGGTCTCTACTTATATCATTGAAAGAGATCGTAGGAGTAAGACTGAAACAAAGAGCTGAATTAAGTTGTCTTTGTAGCATAGTGGACTGACCAAAATAATAATGACGCGCGCAATCTTTTAAGTACTCAACTACTATAGTCAGATACTGGTCCTAATAGTGAAGGCTAAGAGTAACGCTCTTCTGTTTGCCTGTGGGTGTGGCCCATCCAATATACTACACGATTTGTTACGTCTTTTTAAAAATAATGATTAATAAAAATATTTTATAAAATAAGTAATTAAAATGAAATAAATAGAAGGATGATCAATGAATTTAAGACACGTGTCCAGAGAGGAAATAGATGAAAATTTATTTCTTGTCCTAAATAGAAAAGTATTTTGGCAGATGCAGTCATTAGCTCAGACTCCAGAGTGCACACGCAATTATGGACTTTCTTAAAGAGAAATGGGCCGTGGGTCCATGATTGCGTTTTAAGGTCCATGAACTTGAAGAAATTGAAACATGTGGCAACAGTTTTTCTTTTATTTTTTGTTTGATTAAGAACAGATTAACATCTTTTACTTTGCTGATTAATCTTGTGCTAAGTGCAGCCTCGAGGAGATTTAGATGTTTTGAAGTCTGATGATGTAAATCCCCGATGTGTTTTCCATTACGGCATTCCATCAGGATCTGTGCTATCGGCATATGACTCTATCCAAAATATTATTGCCCTTGCTACAAAGTAAGTATTTCTACCACATTTAATGTTATATGGTATATATGTCAAATTTTAATTTGATAAATATATTTATACAAATATTTTCACCTTTTGACACATGAAAGACTTAAATGCAGTGGTTAAAGAATTTTGGTAGTGTGTTCTTCCCTTAGTAGCACATTTAAAACAACACCAACTTTACTCACTATAAGTATTTCATTGAATTATGATTGTAATGTTCTTGTGAGAGTGTTTCACTTTTAATTAGTAGTTTTGAGTTTAAATTTTAGGTACGGAGAAAATTTAATTGGGAGCATCACTCCCGAATGAGTGATTCAATTTTAATCGAAGCTCTAATGTGGATTTCGTACATCGAATAAAAACCGAAAAAAGTATTTTATTGAATTATTATTTAATATTTAATTATTTTAAAACATTTTATGTGAAAAAATCACCAACTATTATAATAGAGTGATTAGTAACAGCAAAATAGAAATCACTTTTTTAAAAAAATAGGAATTTTTGCCTACTTGGCATTTTTTTTTAAAAAAAAAACTACTTTTTTGGGTACATAATAACTCAACATATTTTTAGGAGTTTTTTATGGCAATACAACATGGATTAAAATTTGATATAAATAGTCCACATCACTAAACTAGAATATTAAATGGAAGGGGAGGATCATGACCTCATCCATACAATTGCTATTCTATTTCTATCTCATTACGTCTAAGGAAAAAAATCCCCAGCACAAACAATTCTTTCTTGGATATTCCTTCGTTGATTATGATGCCATTGAAGTGTCCTCAAGCATTTATTACCAATAAACCCTACTTCTTCGCTTTCTACCCCTAATCTCCACACCAAGAAAATCAACGTATATTTACAATGTTGATGAGCACAGTCTTCAACTCCATTGAACCCCTTCATCTCAAAACCTCTTCTTTTTTCCCAGTTTCACTTACCACTAATGTTACGTTATCCTTCAAACCCAGTTCCCCAATCGCCGTCCCTTGTAGACCCATTAAATGGCACATCAGTGCTTGTGCAGCTGGTCAAGAAATCGACATGGAAAGAACCAAACAAGGATTATACGCAGCAAAACCCAAGAAAGTTGTAATCTTGTGGGACTTGGACAATAAACCACCACGAGGCCCACCGTACGAGGCAGCCATGTCGCTGAAAAGGGTAGCGCAATGTTTTGGCGATGTTGTGGATATGTCCGCATATGCTAATCGTCATGCTTTCATCCATCTTCCTCAGTGGGTTGTTGAAGAAAGGCGTGAAAGACGACATCTTGATGTTCTTGAACGTAAAGGGGTTGTAACCCCATCGGAACCTTACATATGTTCTGTCTGTGGACGAAAATGTAAGACCCATATGGATTTAAAGAAGCATTTTAAGCAGTTACATGAAAGGGAAAGGGAAAAAAAACTTAGTCGTATGAGGTCATTAAAAGGCAAGAAAAGACAGAGATTTAAAGAGAGGTTTGTTGATGGTAATTATAAGTATATAGAGGCTGCTAAAAGTTTGATAACACCTAAAGTGGGTTATGGTTTAGCATCTGAGTTGAGGAGAGCTGGGGTTTATGTAAAGACTGTGGCAGATAAGCCACAGGCAGCAGATTGGGCTTTGAAAAAGCAAATGCAGCATTCAATGAGTAGAGGGATCGATTGGTTGTTTTTGATTTCTGATGATTCAGATTTTTGTGATATGTTAAGGAGAGCAAAGGAAGCAAATTTAGGAACAGTAGTAGTTGGGGATTGGGACAGGGCATTGGGGAGGCATGCTGATTTATGGGTTCCATGGAATGGGGTAGAAAATGGAGAGATAACAGAAAAGGATCTAGTGTTAAAGAGTGAGAGACGGAGGGAGTCTTGGGATAGAAGTAATGCACAGTTTTCTGTAAGTGAGTTCAATGGTGGGATAGGAAAGGAGGGTACTAGTTTAGGAAGTTTTATGGATGACATTGTTGAGAAGTTGGAGTCTTCTGGCACGAGGATTTCAGCTTTCTCCGAAGGGGAGGAGGATGAAGAAGTTGAAGAACTGGATGAAGAGGACTGGCTTCGAGCAAGATTAGATCAACGGAGTGATGACGAATATAATACAGATGACTCCATGGTCAGCGACGAAGAGGAGGGGGACTACTTATTGGACAGTGAGGACGAAGATACAGGCGAGATTTTATGAAGTGATGATGAAAGCAATAAGAGAAAGAACAGTTTGCCATTGGTTTTATCAAAATATTTGTACGAATTGATTGAGATAGAGTGTGTGCTCTGTGAAAATGAGGTTTAATGAAAGGTGGCTAAAGCAATTTGACATATTGGTCAAGTTTGTCTTTGTCAGTTAAGCTATCTTAGAGTATATGAGGTAACACAGATGTATCTGACCTTTGATAATGAAAGTATTGCTTTGAAAGTTTACAGTGGTTGTATTCTTTTCACAAAATTTCTGCAAGGTCATGATGTGCTTCACAGCTTAGGGAAAACATTGTCACATATTTGAATATATTACACGACTAATTCCTTTTTAGGGATTCCATTCAAATTTCATTTGTAGCTCTGGATTTTCTTTGATATTACCATCTGTTATGTCCCTTTGATATATGTGTTAATATTAGCTGTTTGGAGTCTCTCTTTCAAACCTGTTTTACCTGCTCTTTTATTGAGACAGTCAAGTTTCAGTCCACGCGAGTTCCTCTAGATATCAGATGTGGAAATTTCTGCTGCATTCAGTTCTGCTCTGCGGTTTGGTGGATAAAAATGCCATATAAATGAGAGAACGGGGCAGTTATTTTAAGTAATTGAATTATTTGCTTTTCTCATTTCTATTGAACTAACTGTTGCTGACAATGTTAATGTATATCCTCAGTTTTGAGTGAAAAAATTGTGTCCAATGATATCATCAATTGCTACTTGTTGAGAGAAGTAATAGAAAAGAAAGAATAGTTACTAAGTTGTCATGCACCATGGTATTGGCAATAAAACTGAGGATAAAAGGAGCAGTAACTTAAGATGTTTCTGAAAGCATATGCAAAAGAACAATCCAATTTAGTGCGATACTGGTTTTTATTTGAAGAAATGAGAGAATACATAGTTGAGATCCACTTAACAATATGCATCAGTTTGCACTGAAGGGCTTATGTTTTTCTTTCGTGATTAGGAATAAACACAAAATGTCTTGACAAGCTGCAAGATACTTTATTTTTCTGTATAATTATGTTTTTCTAAAATGAGGTTTGTGGAGTGCAAGTTGAATGGTTTAGAGGAGGAATGTTTGCTAAATCTGAAAGAAAATTAGATATGTTGATGTTGAAGTCCTATTGGAGAAAGTATCTATTGCAATTTGAAAATGCTCATCTAGGCTTCCATTGGCACATTTATAACTTGTAAGATGAAACTTGCAGTCATTATATAAAGCCAAAAGAAGATGGAAAGTAAAGTTGCCTTTTTGTTTTCTATGTTGAAAATTGAATTGGATCTTTTTTGCTAGTTTGGATGAAAATTTGTGTTGAACTTAAGAGAAAGTTGTAGAAAAGAAAGATTCGTAGCTTGACTGTTAATTTCAGTATGACTTTTGACAATGTAAGTGCAGGTAATACCTTGTTTGGTACATAGCAAGCTTTGGTATTAGCATTACCAGGATTATTGATACATGGATAAGCATGGTTAAAAACAGAACTACCCTTAATACACCAAACCAAACTATTCTTCCGATAACTTTTAGAATCTAATGTAGGGGATGACTAAACAAGGATATGCTTAATGTACTTGATTATCTACTGAAGTGCTGCTTTATATAAAAATCAATGATAGTACATATCAGCAGTTTGCTTAAACAGTTCCAAGGAAGCTGCTGGCTGCATATGCATCAAGGCTTTTGATTTAATGAAGTTTGCTATTCGACCTTCTTTATATCATGCCAAAAGCTTCCTCTTTCATTATCTCTAGTCTCCAGAGCCATTGCCAATATGATCTCTTTCTTATGTTCCAGAGATACAGGAGTCTTCTATTCTCATCATCTGCTCTACTAATTAATTAAAGTGGTTTGATTGTGCTTCTAAATCATGCTGATATGATTCTCTTAGACAGTGCAGTAGGTGGCTCTAGAGAACCAAAAAGTAGATAATGAGATACAATAAAGGAAAGATGGAATGCATGTTGTACCTTGGATGTGAACTGGATATCTATTAACTAAACTCAAGAATCAGACGGCAAGGAATACTTGGTAGATAGCTGACCTGGGTTTTCCATTACATCCCATCAATTAGGTTCCTTTGGCTAATCTAACTTACCAACGGGGCTCAAATTATGGGTTTTGTCATAGCCCCTCGCCGTCACATTCATGGCAAGGAGGTGTATTAGCCACTCACTGCTAGGCGGTAGTCTAGTGTCGAAGGATTGGATTGACAACTTTTCACGTCTATTTTTCATCAAGGTGTCAATTGGTCGTTTTAAAGGGGAGATTAATGCTCATGAGAAATTGTTTCTCAGCGACACTAATATAAATCAATCCTTTAGGCCCACGATTCGAGGTATTGAAATATCAAGTTTGTGTTAATATGCAGAGATGGACGGATCAAATTATTTGGGAAAGATAGCACACAAGCTCTGCTGGTATCATCAGAGATGGTGTCAAGCAAATTTTTGCAGGTATGTATTTTCTGAATCCTGCAAAGAATTTTCTTCATTGAAATAGGCAGTAATACCATGATCATGCATTTTATAAGACTGATCTTTGATGAAAATGCTTAGCTGCTAGTTTATGCTTATTTATTGTTTTGGTCTTGCAGTTTATGGAGAACCAAGGCCTCCTCATTAACATAAACTCCAATAACCGAATAGAGGCAAGTTATTTGATGAAGCTCCTTTAGCATACACATACACTACAAGCAGTACTATTGTAATTTCTAGTAGAAGTTTCCATTATTCCAACTCAAAAGTTCAACTTTCTAGGCTAGACATCCCTGCATGAGTGTGGAGCTGTGTGGTGGGACTAATAATTTGATTACTTGGTCATCATTAGGTCTGGGATGTAGAACAAAGGTATTTGTGTAATGTTCATGACTTCGACCGGGATATCACATCTTTTACAGTCATACAGCACACTATCTACCTGTAAGTGCATCTAAGGTACATCTAGGTTAAGCTGATTTGTACGTGAAGAAGATGTGAACTAGCTATTCATTGTGCTGTCCACAGGTATCTTGGAGACTCGTCAGGACATGTTTCAGTTATGAAGGTTGTTAAAGAACCCTGTAATATAGAGAAAATGAAATACTGTATCCCTCTTTCGGCATCTCATGGTGAGACCAAATCCTCTTTACACCTGTTGCTTATTCGTCATTCAGTTTTCTCTGATGCTTAAATTCTACTGTTCTTTACTCATGAAATAAAGTTGCTTGAGAGGTTCTCATATTGTTTGTGATCATTAATGCTCGTAGCATGTTTCAGGAGTTTGTGGATGAATCTACACATGTAATGTTTAAATTTATTTGTTTCAAAATATACGAGACTTTAGTGTATTCAGAAACATCTAACTGTAGATTGAAGTTGACCTCAGGAACAACGGAAAAACTTTTTATAACTAATTCAAAGGTTATTCCCCGAAATAGAAAAGAAATATAAGAGAACTATTAAACAGATGGTTCAGTCAGTATTCCATACATAGATCCTCAGTACATACTATCCCATGTTGGCCTGACAACACGATCCTGATTCAGGCCTATCAAATGAAGTTTCCGGGGATGCTGCTGTAGCCCATATACTACCTCAACCTGCTGCAGAAACTAAGAGGTAACTTATGCTATTTTTCTCAGTTTCTAAAGAACAAGATAAAAGAATTCCAGCCGGTACGTATTCTGGCACAAGCTAATGCTTCTTTTAATTCAATAAAATTTGTACTTATCAATCTTTCAATAACTGTCACCTAAAAGAATATAAGAGGTCAATTTAATCTTATCAATAGTTCCCTCTCTTCTTTACTGGAGCTTTTTGTTTCATAACTCTTACTGTAAGATGGTCTACCGGAAACAGTTTCTCTGCCCCACAAGGGTAGGGGTAATGTCTGTGTACATCCTACCCTCCCCAGACCCTTCTTGTGGGACTACACTGGGTTTGTTGTTGTTGTTCTTAATCTTACTGCAAGAGAAATTCTGCTGCTGTGAATAAAGTTACTAGTACCCAAAATCTGATTATAATTGGTTGGAACTCTAAAATTTGGAGGTTACTACTCGACATATCTTTATTTAAAAATAATTTAATCCATGTGTATCCAAATGTTACAAAAGTACGTTCAAAAGTTCAATTTGTGAAATGTGGGTTTAATTGAGCCTATTAAAGTTATGCTTACCAGGCATGAAATGAGGCGCTACTGATAACTTTATTTGTTGAATTGCCCTCATACAATATAATGTTACAACTGAATGTTCTTTTACAGACCAAAGGTTTATTATTATTTTGATCATTATGTGGTGATAACTACGTTAGTATAACCATTGTGAAAAAACTTTATTTGATGCAGGGTGGCTATTGTTTACAAAGATGGTGTTATAACACTTTGGTCAATCCATGAAAGTAAAGCAATCTTTATAACCGGGGGGAGTCCTCTGCAATCTATGGGTCA</genome_strand>
        <mrna_strand>CAGAGCTTCGATCTATACAGTTCCGGCGATTTTCCGGCAGAATAAGTAATATTTATGAGTATGTTGAAGAAGCTTGTCGAGAAGGCTTCTTTTGTCAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGAGGAGATTTAGATGGTCTGAAGCCTGATGATGTAAATCCTCGGTGTGTTTTTCATTATGGCATTCCATCAGGATCTGTGCTATCGGCACATGACTCTATCCAAAAAATTGTTGCCCTTGCTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGACGGATCAAATTATTTGGGAAAGATAGCACGCAAGCTCTGTTGGTATCATCAGAGACGGTGTCAAGCAAATTTTTGCAG............................................................................................................................................TTTATGGAGAACCAAGGCCTCCTCATTAACATAAACTCCAATAACCAAATAGAG...................................................................................................................................................................................GTCTGGGATGTAGAACAAAGGTATTTGTGTAATGTTCATAACTTCGACCGGGATATCACATCTTTTACACTCATACAGCACACTCCCTACCT....................................................................................GTATCTTGGAGACTCGTCAGGACATGTTTCAGTTATGAAGGTTGTTAAAGAACCCTGTAATATAGAGAAAATGAAATATTGTATCCCCCTTTCAGCATCTCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCAAATGAAGTTTCAGGGGATGCTGCTGTAGCCCATATACTACCTCAACCTGCTGCAGAAACTAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCTATTGTTTACAAAGATGGTGTTATAACACTATGGTCAATTCGTGAAAGTACAGCAATCTTTATACCGGGGGGGAGTCCTCTGCAATCTATGGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425865" ref_strand="+" ref_description="SGN-E425865 [STM-45-P3]">
      <seq>cagagcttcgatctatacagttccggcgattttccggcagaataagtaatatttatgagtatgttgaagaagcttgtcgagaaggcttcttttgtcaagaagcctcgaggagatttagatggtctgaagcctgatgatgtaaatcctcggtgtgtttttcattatggcattccatcaggatctgtgctatcggcacatgactctatccaaaaaattgttgcccttgctaccaaagatggacggatcaaattatttgggaaagatagcacgcaagctctgttggtatcatcagagacggtgtcaagcaaatttttgcagtttatggagaaccaaggcctcctcattaacataaactccaataaccaaatagaggtctgggatgtagaacaaaggtatttgtgtaatgttcataacttcgaccgggatatcacatcttttacactcatacagcacactccctacctgtatcttggagactcgtcaggacatgtttcagttatgaaggttgttaaagaaccctgtaatatagagaaaatgaaatattgtatccccctttcagcatctcatggcctatcnaatgagtttcaggggatgctgctgtagcccatatactacctcaacctgctgcagaaactaagagggtggctattgtttacaaagatggtgttataacactatggtcaattcgtgaaagtacagcaatcttttataaccggggggagtcctctgcaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="87876" stop="96496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88176" g_stop="88277" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88278" i_stop="89469" i_length="1192">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89470" g_stop="89600" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="233" r_length="131" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89601" i_stop="94146" i_length="4546">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94147" g_stop="94231" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="318" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94232" i_stop="94371" i_length="140">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94372" g_stop="94425" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="372" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94426" i_stop="94604" i_length="179">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94605" g_stop="94696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="94780" i_length="84">
            <donor d_prob="0.882" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94781" g_stop="94884" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="568" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94885" i_stop="95301" i_length="417">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95302" g_stop="95374" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="640" r_length="72" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95375" i_stop="96101" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96102" g_stop="96196" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="736" r_length="96" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E425865" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88176" e_stop="88277"/>
          <exon e_start="89470" e_stop="89600"/>
          <exon e_start="94147" e_stop="94231"/>
          <exon e_start="94372" e_stop="94425"/>
          <exon e_start="94605" e_stop="94696"/>
          <exon e_start="94781" e_stop="94884"/>
          <exon e_start="95302" e_stop="95374"/>
          <exon e_start="96102" e_stop="96196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCCTCGATCTGTACGATTCCGGCGATTTTCCGGCAGAATAAGTAATATTTATGAGTATGTTGAAGAAGCTTGTTGAGAAGGCTTCTTTTGTCAAGAAGGTCAGTCATGATCTCTCTGTTTTAACTCTTTACCTTCTTTTTTTGGATTTGTACTTTCGATTCACTTCAAATTCGAACTTATAAAGTGTTTCAGTAATTAAATTTCATCCTGTCATTGATCGGAAATGTCGATTTTACATTTCTGATTCGTGTTAATCTTACTGATTTCTTCTAGTTTTCTGTTTTAATTTCAAGTTAATAGAACTGGATTTGGTGTGTTAGTGTTAAGAATAATGAATTTATTGAAATTTGAATTGATTGATCTCGATAGTCGTGAAGCATTATGTGATCACGCAATATTAATGCTGAGCTTTAGAGTAGTAGTACTACACTTTTGTCGATCTTAAGCGTTTAGATAAGAATATCAGTATCACCTTTTCGAGATACTGTAACAGTAACACTGCTAGTTTTAAGAATTTTTTGAAATTGATATCCACAATATCCTCTGTATTTGACAATGAAAATATGAGGAACGAATCATTTACTTGGGTGAGTATTAAGAATATGATTAAATGAAAACCGTTTCTATAACATTCAATAATATGTGCTACTTTATAGTTTCTATTTAAAAATTTGGCTAAAAAATGTCATTAAAATACAAGGTCTCTACTTATATCATTGAAAGAGATCGTAGGAGTAAGACTGAAACAAAGAGCTGAATTAAGTTGTCTTTGTAGCATAGTGGACTGACCAAAATAATAATGACGCGCGCAATCTTTTAAGTACTCAACTACTATAGTCAGATACTGGTCCTAATAGTGAAGGCTAAGAGTAACGCTCTTCTGTTTGCCTGTGGGTGTGGCCCATCCAATATACTACACGATTTGTTACGTCTTTTTAAAAATAATGATTAATAAAAATATTTTATAAAATAAGTAATTAAAATGAAATAAATAGAAGGATGATCAATGAATTTAAGACACGTGTCCAGAGAGGAAATAGATGAAAATTTATTTCTTGTCCTAAATAGAAAAGTATTTTGGCAGATGCAGTCATTAGCTCAGACTCCAGAGTGCACACGCAATTATGGACTTTCTTAAAGAGAAATGGGCCGTGGGTCCATGATTGCGTTTTAAGGTCCATGAACTTGAAGAAATTGAAACATGTGGCAACAGTTTTTCTTTTATTTTTTGTTTGATTAAGAACAGATTAACATCTTTTACTTTGCTGATTAATCTTGTGCTAAGTGCAGCCTCGAGGAGATTTAGATGTTTTGAAGTCTGATGATGTAAATCCCCGATGTGTTTTCCATTACGGCATTCCATCAGGATCTGTGCTATCGGCATATGACTCTATCCAAAATATTATTGCCCTTGCTACAAAGTAAGTATTTCTACCACATTTAATGTTATATGGTATATATGTCAAATTTTAATTTGATAAATATATTTATACAAATATTTTCACCTTTTGACACATGAAAGACTTAAATGCAGTGGTTAAAGAATTTTGGTAGTGTGTTCTTCCCTTAGTAGCACATTTAAAACAACACCAACTTTACTCACTATAAGTATTTCATTGAATTATGATTGTAATGTTCTTGTGAGAGTGTTTCACTTTTAATTAGTAGTTTTGAGTTTAAATTTTAGGTACGGAGAAAATTTAATTGGGAGCATCACTCCCGAATGAGTGATTCAATTTTAATCGAAGCTCTAATGTGGATTTCGTACATCGAATAAAAACCGAAAAAAGTATTTTATTGAATTATTATTTAATATTTAATTATTTTAAAACATTTTATGTGAAAAAATCACCAACTATTATAATAGAGTGATTAGTAACAGCAAAATAGAAATCACTTTTTTAAAAAAATAGGAATTTTTGCCTACTTGGCATTTTTTTTTAAAAAAAAAACTACTTTTTTGGGTACATAATAACTCAACATATTTTTAGGAGTTTTTTATGGCAATACAACATGGATTAAAATTTGATATAAATAGTCCACATCACTAAACTAGAATATTAAATGGAAGGGGAGGATCATGACCTCATCCATACAATTGCTATTCTATTTCTATCTCATTACGTCTAAGGAAAAAAATCCCCAGCACAAACAATTCTTTCTTGGATATTCCTTCGTTGATTATGATGCCATTGAAGTGTCCTCAAGCATTTATTACCAATAAACCCTACTTCTTCGCTTTCTACCCCTAATCTCCACACCAAGAAAATCAACGTATATTTACAATGTTGATGAGCACAGTCTTCAACTCCATTGAACCCCTTCATCTCAAAACCTCTTCTTTTTTCCCAGTTTCACTTACCACTAATGTTACGTTATCCTTCAAACCCAGTTCCCCAATCGCCGTCCCTTGTAGACCCATTAAATGGCACATCAGTGCTTGTGCAGCTGGTCAAGAAATCGACATGGAAAGAACCAAACAAGGATTATACGCAGCAAAACCCAAGAAAGTTGTAATCTTGTGGGACTTGGACAATAAACCACCACGAGGCCCACCGTACGAGGCAGCCATGTCGCTGAAAAGGGTAGCGCAATGTTTTGGCGATGTTGTGGATATGTCCGCATATGCTAATCGTCATGCTTTCATCCATCTTCCTCAGTGGGTTGTTGAAGAAAGGCGTGAAAGACGACATCTTGATGTTCTTGAACGTAAAGGGGTTGTAACCCCATCGGAACCTTACATATGTTCTGTCTGTGGACGAAAATGTAAGACCCATATGGATTTAAAGAAGCATTTTAAGCAGTTACATGAAAGGGAAAGGGAAAAAAAACTTAGTCGTATGAGGTCATTAAAAGGCAAGAAAAGACAGAGATTTAAAGAGAGGTTTGTTGATGGTAATTATAAGTATATAGAGGCTGCTAAAAGTTTGATAACACCTAAAGTGGGTTATGGTTTAGCATCTGAGTTGAGGAGAGCTGGGGTTTATGTAAAGACTGTGGCAGATAAGCCACAGGCAGCAGATTGGGCTTTGAAAAAGCAAATGCAGCATTCAATGAGTAGAGGGATCGATTGGTTGTTTTTGATTTCTGATGATTCAGATTTTTGTGATATGTTAAGGAGAGCAAAGGAAGCAAATTTAGGAACAGTAGTAGTTGGGGATTGGGACAGGGCATTGGGGAGGCATGCTGATTTATGGGTTCCATGGAATGGGGTAGAAAATGGAGAGATAACAGAAAAGGATCTAGTGTTAAAGAGTGAGAGACGGAGGGAGTCTTGGGATAGAAGTAATGCACAGTTTTCTGTAAGTGAGTTCAATGGTGGGATAGGAAAGGAGGGTACTAGTTTAGGAAGTTTTATGGATGACATTGTTGAGAAGTTGGAGTCTTCTGGCACGAGGATTTCAGCTTTCTCCGAAGGGGAGGAGGATGAAGAAGTTGAAGAACTGGATGAAGAGGACTGGCTTCGAGCAAGATTAGATCAACGGAGTGATGACGAATATAATACAGATGACTCCATGGTCAGCGACGAAGAGGAGGGGGACTACTTATTGGACAGTGAGGACGAAGATACAGGCGAGATTTTATGAAGTGATGATGAAAGCAATAAGAGAAAGAACAGTTTGCCATTGGTTTTATCAAAATATTTGTACGAATTGATTGAGATAGAGTGTGTGCTCTGTGAAAATGAGGTTTAATGAAAGGTGGCTAAAGCAATTTGACATATTGGTCAAGTTTGTCTTTGTCAGTTAAGCTATCTTAGAGTATATGAGGTAACACAGATGTATCTGACCTTTGATAATGAAAGTATTGCTTTGAAAGTTTACAGTGGTTGTATTCTTTTCACAAAATTTCTGCAAGGTCATGATGTGCTTCACAGCTTAGGGAAAACATTGTCACATATTTGAATATATTACACGACTAATTCCTTTTTAGGGATTCCATTCAAATTTCATTTGTAGCTCTGGATTTTCTTTGATATTACCATCTGTTATGTCCCTTTGATATATGTGTTAATATTAGCTGTTTGGAGTCTCTCTTTCAAACCTGTTTTACCTGCTCTTTTATTGAGACAGTCAAGTTTCAGTCCACGCGAGTTCCTCTAGATATCAGATGTGGAAATTTCTGCTGCATTCAGTTCTGCTCTGCGGTTTGGTGGATAAAAATGCCATATAAATGAGAGAACGGGGCAGTTATTTTAAGTAATTGAATTATTTGCTTTTCTCATTTCTATTGAACTAACTGTTGCTGACAATGTTAATGTATATCCTCAGTTTTGAGTGAAAAAATTGTGTCCAATGATATCATCAATTGCTACTTGTTGAGAGAAGTAATAGAAAAGAAAGAATAGTTACTAAGTTGTCATGCACCATGGTATTGGCAATAAAACTGAGGATAAAAGGAGCAGTAACTTAAGATGTTTCTGAAAGCATATGCAAAAGAACAATCCAATTTAGTGCGATACTGGTTTTTATTTGAAGAAATGAGAGAATACATAGTTGAGATCCACTTAACAATATGCATCAGTTTGCACTGAAGGGCTTATGTTTTTCTTTCGTGATTAGGAATAAACACAAAATGTCTTGACAAGCTGCAAGATACTTTATTTTTCTGTATAATTATGTTTTTCTAAAATGAGGTTTGTGGAGTGCAAGTTGAATGGTTTAGAGGAGGAATGTTTGCTAAATCTGAAAGAAAATTAGATATGTTGATGTTGAAGTCCTATTGGAGAAAGTATCTATTGCAATTTGAAAATGCTCATCTAGGCTTCCATTGGCACATTTATAACTTGTAAGATGAAACTTGCAGTCATTATATAAAGCCAAAAGAAGATGGAAAGTAAAGTTGCCTTTTTGTTTTCTATGTTGAAAATTGAATTGGATCTTTTTTGCTAGTTTGGATGAAAATTTGTGTTGAACTTAAGAGAAAGTTGTAGAAAAGAAAGATTCGTAGCTTGACTGTTAATTTCAGTATGACTTTTGACAATGTAAGTGCAGGTAATACCTTGTTTGGTACATAGCAAGCTTTGGTATTAGCATTACCAGGATTATTGATACATGGATAAGCATGGTTAAAAACAGAACTACCCTTAATACACCAAACCAAACTATTCTTCCGATAACTTTTAGAATCTAATGTAGGGGATGACTAAACAAGGATATGCTTAATGTACTTGATTATCTACTGAAGTGCTGCTTTATATAAAAATCAATGATAGTACATATCAGCAGTTTGCTTAAACAGTTCCAAGGAAGCTGCTGGCTGCATATGCATCAAGGCTTTTGATTTAATGAAGTTTGCTATTCGACCTTCTTTATATCATGCCAAAAGCTTCCTCTTTCATTATCTCTAGTCTCCAGAGCCATTGCCAATATGATCTCTTTCTTATGTTCCAGAGATACAGGAGTCTTCTATTCTCATCATCTGCTCTACTAATTAATTAAAGTGGTTTGATTGTGCTTCTAAATCATGCTGATATGATTCTCTTAGACAGTGCAGTAGGTGGCTCTAGAGAACCAAAAAGTAGATAATGAGATACAATAAAGGAAAGATGGAATGCATGTTGTACCTTGGATGTGAACTGGATATCTATTAACTAAACTCAAGAATCAGACGGCAAGGAATACTTGGTAGATAGCTGACCTGGGTTTTCCATTACATCCCATCAATTAGGTTCCTTTGGCTAATCTAACTTACCAACGGGGCTCAAATTATGGGTTTTGTCATAGCCCCTCGCCGTCACATTCATGGCAAGGAGGTGTATTAGCCACTCACTGCTAGGCGGTAGTCTAGTGTCGAAGGATTGGATTGACAACTTTTCACGTCTATTTTTCATCAAGGTGTCAATTGGTCGTTTTAAAGGGGAGATTAATGCTCATGAGAAATTGTTTCTCAGCGACACTAATATAAATCAATCCTTTAGGCCCACGATTCGAGGTATTGAAATATCAAGTTTGTGTTAATATGCAGAGATGGACGGATCAAATTATTTGGGAAAGATAGCACACAAGCTCTGCTGGTATCATCAGAGATGGTGTCAAGCAAATTTTTGCAGGTATGTATTTTCTGAATCCTGCAAAGAATTTTCTTCATTGAAATAGGCAGTAATACCATGATCATGCATTTTATAAGACTGATCTTTGATGAAAATGCTTAGCTGCTAGTTTATGCTTATTTATTGTTTTGGTCTTGCAGTTTATGGAGAACCAAGGCCTCCTCATTAACATAAACTCCAATAACCGAATAGAGGCAAGTTATTTGATGAAGCTCCTTTAGCATACACATACACTACAAGCAGTACTATTGTAATTTCTAGTAGAAGTTTCCATTATTCCAACTCAAAAGTTCAACTTTCTAGGCTAGACATCCCTGCATGAGTGTGGAGCTGTGTGGTGGGACTAATAATTTGATTACTTGGTCATCATTAGGTCTGGGATGTAGAACAAAGGTATTTGTGTAATGTTCATGACTTCGACCGGGATATCACATCTTTTACAGTCATACAGCACACTATCTACCTGTAAGTGCATCTAAGGTACATCTAGGTTAAGCTGATTTGTACGTGAAGAAGATGTGAACTAGCTATTCATTGTGCTGTCCACAGGTATCTTGGAGACTCGTCAGGACATGTTTCAGTTATGAAGGTTGTTAAAGAACCCTGTAATATAGAGAAAATGAAATACTGTATCCCTCTTTCGGCATCTCATGGTGAGACCAAATCCTCTTTACACCTGTTGCTTATTCGTCATTCAGTTTTCTCTGATGCTTAAATTCTACTGTTCTTTACTCATGAAATAAAGTTGCTTGAGAGGTTCTCATATTGTTTGTGATCATTAATGCTCGTAGCATGTTTCAGGAGTTTGTGGATGAATCTACACATGTAATGTTTAAATTTATTTGTTTCAAAATATACGAGACTTTAGTGTATTCAGAAACATCTAACTGTAGATTGAAGTTGACCTCAGGAACAACGGAAAAACTTTTTATAACTAATTCAAAGGTTATTCCCCGAAATAGAAAAGAAATATAAGAGAACTATTAAACAGATGGTTCAGTCAGTATTCCATACATAGATCCTCAGTACATACTATCCCATGTTGGCCTGACAACACGATCCTGATTCAGGCCTATCAAATGAAGTTTCCGGGGATGCTGCTGTAGCCCATATACTACCTCAACCTGCTGCAGAAACTAAGAGGTAACTTATGCTATTTTTCTCAGTTTCTAAAGAACAAGATAAAAGAATTCCAGCCGGTACGTATTCTGGCACAAGCTAATGCTTCTTTTAATTCAATAAAATTTGTACTTATCAATCTTTCAATAACTGTCACCTAAAAGAATATAAGAGGTCAATTTAATCTTATCAATAGTTCCCTCTCTTCTTTACTGGAGCTTTTTGTTTCATAACTCTTACTGTAAGATGGTCTACCGGAAACAGTTTCTCTGCCCCACAAGGGTAGGGGTAATGTCTGTGTACATCCTACCCTCCCCAGACCCTTCTTGTGGGACTACACTGGGTTTGTTGTTGTTGTTCTTAATCTTACTGCAAGAGAAATTCTGCTGCTGTGAATAAAGTTACTAGTACCCAAAATCTGATTATAATTGGTTGGAACTCTAAAATTTGGAGGTTACTACTCGACATATCTTTATTTAAAAATAATTTAATCCATGTGTATCCAAATGTTACAAAAGTACGTTCAAAAGTTCAATTTGTGAAATGTGGGTTTAATTGAGCCTATTAAAGTTATGCTTACCAGGCATGAAATGAGGCGCTACTGATAACTTTATTTGTTGAATTGCCCTCATACAATATAATGTTACAACTGAATGTTCTTTTACAGACCAAAGGTTTATTATTATTTTGATCATTATGTGGTGATAACTACGTTAGTATAACCATTGTGAAAAAACTTTATTTGATGCAGGGTGGCTATTGTTTACAAAGATGGTGTTATAACACTTTGGTCAATCCATGAAAGTAAAGCAATC-TTTATAACCGGGGGGAGTCCTCTGCAATCTA</genome_strand>
        <mrna_strand>CAGAGCTTCGATCTATACAGTTCCGGCGATTTTCCGGCAGAATAAGTAATATTTATGAGTATGTTGAAGAAGCTTGTCGAGAAGGCTTCTTTTGTCAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGAGGAGATTTAGATGGTCTGAAGCCTGATGATGTAAATCCTCGGTGTGTTTTTCATTATGGCATTCCATCAGGATCTGTGCTATCGGCACATGACTCTATCCAAAAAATTGTTGCCCTTGCTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGACGGATCAAATTATTTGGGAAAGATAGCACGCAAGCTCTGTTGGTATCATCAGAGACGGTGTCAAGCAAATTTTTGCAG............................................................................................................................................TTTATGGAGAACCAAGGCCTCCTCATTAACATAAACTCCAATAACCAAATAGAG...................................................................................................................................................................................GTCTGGGATGTAGAACAAAGGTATTTGTGTAATGTTCATAACTTCGACCGGGATATCACATCTTTTACACTCATACAGCACACTCCCTACCT....................................................................................GTATCTTGGAGACTCGTCAGGACATGTTTCAGTTATGAAGGTTGTTAAAGAACCCTGTAATATAGAGAAAATGAAATATTGTATCCCCCTTTCAGCATCTCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCNAATG-AGTTTCAGGGGATGCTGCTGTAGCCCATATACTACCTCAACCTGCTGCAGAAACTAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCTATTGTTTACAAAGATGGTGTTATAACACTATGGTCAATTCGTGAAAGTACAGCAATCTTTTATAACCGGGGGGAGTCCTCTGCAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315846" ref_strand="+" ref_description="SGN-E315846 [cTOA-26-G19]">
      <seq>tcagcagagtgaggacaacctttccttaagtggtgtacccttaacggcattatgtcttacatctgacttacatatcctcatttctggtgatcaaagtggaacggtacgtatctacaagttcaaaactgagttttttgccccagatactagttttctatcctttcaaggttcaaagaaaggaagcaacccaatccagagcattaagcttgtcaaagttaatggagctgtactttctataagtaccagtgaggattctaagtattttgctgttggttctgaccaaggatatgtggtattaattgattctgacagcaagactatactgtatcaaacacatattgccagtgaactctgtgcaggtgtcatgtctatgcagttcaacacgtgtagcttgcatggattcgacaagaatatcttagtggtagcgactaaggattcatcagtcttggcccttgagacagaaacaggaaatatattaagcccttccagtgtccatccaaagaaaccttccagagctttacttatgcagattttggatggacttgaaatgtctggtcgaggattaagcatttcagatggtatagacattattaaggggaattcggataatgttgcatcaaagcaaccattagtattgatctgttctgaaaaggctgtgtatgtctattccttattgcatattattcagggntattagaaagtatactacaaaagaagttcattccacgctatgttgctgggcatcaacatttgacatgccctgagcgggccttatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="97485" stop="99796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97785" g_stop="97887" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97888" i_stop="97970" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97971" g_stop="98034" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="167" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98035" i_stop="98207" i_length="173">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98208" g_stop="98329" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="289" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98330" i_stop="98806" i_length="477">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98807" g_stop="99053" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="536" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99054" i_stop="99162" i_length="109">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99163" g_stop="99314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="688" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99315" i_stop="99402" i_length="88">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99403" g_stop="99496" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="780" r_length="92" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E315846" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97785" e_stop="97887"/>
          <exon e_start="97971" e_stop="98034"/>
          <exon e_start="98208" e_stop="98329"/>
          <exon e_start="98807" e_stop="99053"/>
          <exon e_start="99163" e_stop="99314"/>
          <exon e_start="99403" e_stop="99496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACGGTAAACTGTCTATAATGGATTTACCAAAATGAAGAAATTTTCTGCATTCTGAGGGTTTTAATTCTTGTATACTTGGCGTGCAGGTACGTATCTACAAGTTCAAAACTGAGTTTTTTGCCCCAGATACTAGTTTTCTATCCTTTCAAGGTATGTAGCATGAATGTCAGGAAAACTTTGAGAATTTGATCTTACATCTTATATTATTAATGGTTTTGCTCTCTTAAAAGATAGACATATCCCTTTCTTTTTTTTATGTAAGCAAATATTTCAAGAATCAGCAAAAAAAATGAATTATTGACTTATTCACCCAACTCCAGTAGGTTCAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATATGTAAGTTTCTGCTTCTATTTTTCCTCCAGCTATACATCATTCATTTTATTCCTTTAGGTTTTCAAGCATTTCAATACTGCACCCTTCTCCTTCCAAGACAAATGTCGGTCTCAATCATTTGGGAATAATGCCGCTACAGTAAGTTTGTAGGACCTGTGCAGAATGTGAACTGTATATCTCAGAATTTTTTGTTAAATGTTATTGTTAATTCTGTTTAATATGGTGGTTCTCTAGTAAGGAGGAGCCTGGAAAACAGCTTGGTTTTACACACACATTTTATAAGGCTCTAGTAACTCTGAGTTTTTAACAAGTACCTTAACTGAATTTATTCGGACCCTTGAGATACAAAGTTCCCAGTGACCTGTTTTCTTGTGATTGTATAAGGGGGAGTATGTGACATATTGAGGATGCTTTTCAAGTCGAGTGTTTGTATTAAAAGATTCGAGTGTTTGAAATCCCATAATTTGTGGTATGCAGGTGGTATTAATTGATTCTGACAGCAAGACTATACTGTATCAAACACATATTGCCAGTGAACTCTGTGCAGGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTATGCAGATTTTGGGTATTTCACGATTTTTTATAGGATCTGTTCATTTTCTCGAAAAGCTTCTCATGAACGCTTGAAACTAACAAAAATTCATGTATTTTCCTTTTCTCTACATTTGATGCAGATGGACTTGAAATGTCTGGTCGAGGATTAAGCATTTCAGATGGTATAGACATTATTAAGGGGAATTCGGATAATGTTGCATCAAAGCAACCATTAGTATTGATCTGTTCTGAAAAGGCTGTGTATGTCTATTCCTTATTGCATATTATTCAGGTATGTGTCTATTTGTCTTGTTGTGCTTATATAAAATTGGTGGACTATCCATCTCAGTGTGTGTTCTCTTTGCTTGAAATATATTCAGGG-TATTAAGAAAGTATACTACAAAAAGAAGTTCCATTCCACGCTATGTTGCTGGGCATCAACATTTGACATGCCTGAGGCGGGCCTTATGCTTC</genome_strand>
        <mrna_strand>TCAGCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACG...................................................................................GTACGTATCTACAAGTTCAAAACTGAGTTTTTTGCCCCAGATACTAGTTTTCTATCCTTTCAAG.............................................................................................................................................................................GTTCAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATTAATTGATTCTGACAGCAAGACTATACTGTATCAAACACATATTGCCAGTGAACTCTGTGCAGGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTATGCAGATTTTGG.............................................................................................................ATGGACTTGAAATGTCTGGTCGAGGATTAAGCATTTCAGATGGTATAGACATTATTAAGGGGAATTCGGATAATGTTGCATCAAAGCAACCATTAGTATTGATCTGTTCTGAAAAGGCTGTGTATGTCTATTCCTTATTGCATATTATTCAG........................................................................................GGNTATT-AGAAAGTATACTAC-AAAAGAAGTT-CATTCCACGCTATGTTGCTGGGCATCAACATTTGACATGCCCTGAGCGGGCCTTATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315926" ref_strand="+" ref_description="SGN-E315926 [cTOA-26-H5]">
      <seq>tcagcagagtgaggacaacctttccttaagtggtgtacccttaacggcattatgtcttacatctgacttacatatcctcatttctggtgatcaaagtggaacggtacgtatctacaagttcaaaactgagttttttgccccagatactagttttctatcctttcaaggttcaaagaaaggaagcaacccaatccagagcattaagcttgtcaaagttaatggagctgtactttctataagtaccagtgaggattctaagtattttgctgttggttctgaccaaggatatgtggtattaattgattctgacagcaagactatactgtatcaaacacatattgccagtgaactctgtgcaggtgtcatgtctatgcagttcaacacgtgtagcttgcatggattcgacaagaatatcttagtggtagcgactaaggattcatcagtcttggcccttgagacagaaacaggaaatatattaagcccttccagtgtccatccaaagaaaccttccagagctttacttatgcagaatttggatggacttngaatgtctgatcgaggattaagcatttcagatggtatagacattattaaggggaattcggataatgttgcatcagagcaaccattagtattgatctgttctgaaaaggctgtgcatgtctattccttattgcatattattcagggtattaagaaaagatactacaacaagaaagtccattccacgctatgttgctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="97485" stop="99758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97785" g_stop="97887" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97888" i_stop="97970" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97971" g_stop="98034" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="167" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98035" i_stop="98207" i_length="173">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98208" g_stop="98329" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="289" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98330" i_stop="98806" i_length="477">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98807" g_stop="99053" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="536" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99054" i_stop="99162" i_length="109">
            <donor d_prob="0.701" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99163" g_stop="99314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="688" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99315" i_stop="99402" i_length="88">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99403" g_stop="99458" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="744" r_length="56" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E315926" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97785" e_stop="97887"/>
          <exon e_start="97971" e_stop="98034"/>
          <exon e_start="98208" e_stop="98329"/>
          <exon e_start="98807" e_stop="99053"/>
          <exon e_start="99163" e_stop="99314"/>
          <exon e_start="99403" e_stop="99458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACGGTAAACTGTCTATAATGGATTTACCAAAATGAAGAAATTTTCTGCATTCTGAGGGTTTTAATTCTTGTATACTTGGCGTGCAGGTACGTATCTACAAGTTCAAAACTGAGTTTTTTGCCCCAGATACTAGTTTTCTATCCTTTCAAGGTATGTAGCATGAATGTCAGGAAAACTTTGAGAATTTGATCTTACATCTTATATTATTAATGGTTTTGCTCTCTTAAAAGATAGACATATCCCTTTCTTTTTTTTATGTAAGCAAATATTTCAAGAATCAGCAAAAAAAATGAATTATTGACTTATTCACCCAACTCCAGTAGGTTCAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATATGTAAGTTTCTGCTTCTATTTTTCCTCCAGCTATACATCATTCATTTTATTCCTTTAGGTTTTCAAGCATTTCAATACTGCACCCTTCTCCTTCCAAGACAAATGTCGGTCTCAATCATTTGGGAATAATGCCGCTACAGTAAGTTTGTAGGACCTGTGCAGAATGTGAACTGTATATCTCAGAATTTTTTGTTAAATGTTATTGTTAATTCTGTTTAATATGGTGGTTCTCTAGTAAGGAGGAGCCTGGAAAACAGCTTGGTTTTACACACACATTTTATAAGGCTCTAGTAACTCTGAGTTTTTAACAAGTACCTTAACTGAATTTATTCGGACCCTTGAGATACAAAGTTCCCAGTGACCTGTTTTCTTGTGATTGTATAAGGGGGAGTATGTGACATATTGAGGATGCTTTTCAAGTCGAGTGTTTGTATTAAAAGATTCGAGTGTTTGAAATCCCATAATTTGTGGTATGCAGGTGGTATTAATTGATTCTGACAGCAAGACTATACTGTATCAAACACATATTGCCAGTGAACTCTGTGCAGGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTATGCAGATTTTGGGTATTTCACGATTTTTTATAGGATCTGTTCATTTTCTCGAAAAGCTTCTCATGAACGCTTGAAACTAACAAAAATTCATGTATTTTCCTTTTCTCTACATTTGATGCAGATGGACTTGAAATGTCTGGTCGAGGATTAAGCATTTCAGATGGTATAGACATTATTAAGGGGAATTCGGATAATGTTGCATCAAAGCAACCATTAGTATTGATCTGTTCTGAAAAGGCTGTGTATGTCTATTCCTTATTGCATATTATTCAGGTATGTGTCTATTTGTCTTGTTGTGCTTATATAAAATTGGTGGACTATCCATCTCAGTGTGTGTTCTCTTTGCTTGAAATATATTCAGGGTATTAAGAAAGTATACTACAAAAAGAAGTTCCATTCCACGCTATGTTGCTGGGC</genome_strand>
        <mrna_strand>TCAGCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACG...................................................................................GTACGTATCTACAAGTTCAAAACTGAGTTTTTTGCCCCAGATACTAGTTTTCTATCCTTTCAAG.............................................................................................................................................................................GTTCAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATTAATTGATTCTGACAGCAAGACTATACTGTATCAAACACATATTGCCAGTGAACTCTGTGCAGGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTATGCAGAATTTGG.............................................................................................................ATGGACTTNGAATGTCTGATCGAGGATTAAGCATTTCAGATGGTATAGACATTATTAAGGGGAATTCGGATAATGTTGCATCAGAGCAACCATTAGTATTGATCTGTTCTGAAAAGGCTGTGCATGTCTATTCCTTATTGCATATTATTCAG........................................................................................GGTATTAAGAAAAGATACTACAACAAGAAAGTCCATTCCACGCTATGTTGCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315961" ref_strand="+" ref_description="SGN-E315961 [cTOA-26-F18]">
      <seq>tcatcagagtgaggacaacctttccttaagtggtgtacccttaacggcattatgtcttacatctgacttacatatcctcatttctggtgatcaaagtggaacggtacgtatctactagttcagaactgagtttattgccccagatactagttttctatcctttcaagggacaaagaaaggaagcaacccaatccagagcattaagcttgtcaaagttaatggagctgtactttctataagtaccagtgaggattctaagtattttgctgttggttctgaccaaggatatgtggtattaattgattctgacaggaagactatactgcatcaaacacatattgccactgaactctgtgcaagtgtcatgtctatgcagttcaacacgtgtagcttgcgtggattcgacaagaatatcttactgggagcgactaatgattcatcattcttggcccttgagacagaaacaggaaatatattaagcccttccagtgtccatcccaagaaaccttccagagctttactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="97485" stop="99341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97785" g_stop="97887" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97888" i_stop="97970" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97971" g_stop="98034" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="167" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98035" i_stop="98207" i_length="173">
            <donor d_prob="0.897" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98208" g_stop="98329" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="289" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98330" i_stop="98806" i_length="477">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98807" g_stop="99041" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="524" r_length="235" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E315961" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97785" e_stop="97887"/>
          <exon e_start="97971" e_stop="98034"/>
          <exon e_start="98208" e_stop="98329"/>
          <exon e_start="98807" e_stop="99041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACGGTAAACTGTCTATAATGGATTTACCAAAATGAAGAAATTTTCTGCATTCTGAGGGTTTTAATTCTTGTATACTTGGCGTGCAGGTACGTATCTACAAGTTCAAAACTGAGTTTTTTGCCCCAGATACTAGTTTTCTATCCTTTCAAGGTATGTAGCATGAATGTCAGGAAAACTTTGAGAATTTGATCTTACATCTTATATTATTAATGGTTTTGCTCTCTTAAAAGATAGACATATCCCTTTCTTTTTTTTATGTAAGCAAATATTTCAAGAATCAGCAAAAAAAATGAATTATTGACTTATTCACCCAACTCCAGTAGGTTCAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATATGTAAGTTTCTGCTTCTATTTTTCCTCCAGCTATACATCATTCATTTTATTCCTTTAGGTTTTCAAGCATTTCAATACTGCACCCTTCTCCTTCCAAGACAAATGTCGGTCTCAATCATTTGGGAATAATGCCGCTACAGTAAGTTTGTAGGACCTGTGCAGAATGTGAACTGTATATCTCAGAATTTTTTGTTAAATGTTATTGTTAATTCTGTTTAATATGGTGGTTCTCTAGTAAGGAGGAGCCTGGAAAACAGCTTGGTTTTACACACACATTTTATAAGGCTCTAGTAACTCTGAGTTTTTAACAAGTACCTTAACTGAATTTATTCGGACCCTTGAGATACAAAGTTCCCAGTGACCTGTTTTCTTGTGATTGTATAAGGGGGAGTATGTGACATATTGAGGATGCTTTTCAAGTCGAGTGTTTGTATTAAAAGATTCGAGTGTTTGAAATCCCATAATTTGTGGTATGCAGGTGGTATTAATTGATTCTGACAGCAAGACTATACTGTATCAAACACATATTGCCAGTGAACTCTGTGCAGGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTA</genome_strand>
        <mrna_strand>TCATCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACG...................................................................................GTACGTATCTACTAGTTCAGAACTGAGTTTATTGCCCCAGATACTAGTTTTCTATCCTTTCAAG.............................................................................................................................................................................GGACAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATTAATTGATTCTGACAGGAAGACTATACTGCATCAAACACATATTGCCACTGAACTCTGTGCAAGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCGTGGATTCGACAAGAATATCTTACTGGGAGCGACTAATGATTCATCATTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCCAAGAAACCTTCCAGAGCTTTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425866" ref_strand="-" ref_description="SGN-E425866 [STM-45-P3]">
      <seq>tcatcactatgcagttcaacacgtgtagctngcatggattcgacaagaatatcttagtggtagcgactaaggattcatcaatcttggcccttgagacagaaacaggaaatatactaagcccttccagtgttcatccaaagaaaccttccagagctttatttatgcagattttggatggacaagaaatgtctggtcgaggattaagcattttagatggtatagacatgattaaggggaattcggataatattgcatcaaagcaaccgttagtattgatttgttctgaaaaagctgtgtatgtctattccttattgcatattattcagggtattaagaaagtatactacaaaaagaagtttcattcctctctgtgttgctgggcatcaacatttgacacacctgaggccggccttatgcttctcttctcgaatggaaagattgagattaggtctcttccagagttgtcccttctaaaggaaacttcagttagaggcctcgtactttcgccgccgaaggcaaacgccatagctgaccattcagtatgcgcgtcaaaaactggtgaactcatagtggttgacagggatcaagaaatgttcttcgtctcagtttccttgcaaaatgacaccttcaggttcctggactttgcttcccatgtttacgatagagatctagtggttgaaccagggaggatctctgcacccatcatccaaaaaagttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="98580" stop="101531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98880" g_stop="99053" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99054" i_stop="99162" i_length="109">
            <donor d_prob="0.701" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99163" g_stop="99314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="326" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99315" i_stop="99402" i_length="88">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.815" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99403" g_stop="99524" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="448" r_length="122" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99525" i_stop="100691" i_length="1167">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100692" g_stop="100815" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="572" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100816" i_stop="100908" i_length="93">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100909" g_stop="100967" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="631" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100968" i_stop="101149" i_length="182">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101150" g_stop="101238" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="720" r_length="89" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E425866" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425866" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98880" e_stop="99053"/>
          <exon e_start="99163" e_stop="99314"/>
          <exon e_start="99403" e_stop="99524"/>
          <exon e_start="100692" e_stop="100815"/>
          <exon e_start="100909" e_stop="100967"/>
          <exon e_start="101150" e_stop="101238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTATGCAGATTTTGGGTATTTCACGATTTTTTATAGGATCTGTTCATTTTCTCGAAAAGCTTCTCATGAACGCTTGAAACTAACAAAAATTCATGTATTTTCCTTTTCTCTACATTTGATGCAGATGGACTTGAAATGTCTGGTCGAGGATTAAGCATTTCAGATGGTATAGACATTATTAAGGGGAATTCGGATAATGTTGCATCAAAGCAACCATTAGTATTGATCTGTTCTGAAAAGGCTGTGTATGTCTATTCCTTATTGCATATTATTCAGGTATGTGTCTATTTGTCTTGTTGTGCTTATATAAAATTGGTGGACTATCCATCTCAGTGTGTGTTCTCTTTGCTTGAAATATATTCAGGGTATTAAGAAAGTATACTACAAAAAGAAGTTCCATTCCACGCTATGTTGCTGGGCATCAACATTTGACATGCCTGAGGCGGGCCTTATGCTTCTCTTCTCGAATGGAAAGATTGAGATTAGGTGATGTTTCTTCTACTGTGTGACCAAAATATATATGAGAAGTATTCTGCTCGGTAATATTATCATGAACTGTTCCTTTATTCTTGATTCTATCATGGATCTTACAAGCTTTTACCGGCATAGAAATGTTTAGTCTCGGTTCTAGTTCAAAAGCATACTACGGCATACTAGATACTGGATATCTAAACCATTAATCTTGTCTCGGGGACAATAATACAATTTTTTAAAACATGTAGATTTTGCCTCTTCAAAACAGAGCTTATTAGTTTGCATTTCTATCATTTCCTTTTCTGAAGTCCTGTAGGTAAGCTACAAAGTGCATTTAAATGCAAAATATGAGTGCCACTAGAGACATACCTCGTGGAGACTTAGAGGTAAGTACCACAAAGTAGTGGTTAGACCTACTATGTTGTATGGGGTGGAGTGTATAACGAAGATGAGGATGTTGAAATGGATGTATGGCATACCAGAAGAGAGAAGATTAAGAATGATGACATTGGGTCCAAGGTGAGAGTGGCTTCCATGGAGGATAAGATGCGGGAAGTGAGATTGAGGTGGTTCAGGCATGTGTAGAGAAGATGTGCAGATGACTCAGTAAGGAGGTGCAAGAGGTTGACTGCACTGAGCTTGAGGAGGGGTTGATGTAGGCCTAAGAAGTATCGGACTGAGGTGATTAAGCAGGACACAGTACAACTTCATCTCACTGTGGACATGACTCTCGAAAGGAAGGTGTGGAGGTCGATAATTAGGGTAGAAGGTGTTGGTAGTCAGGAGTATTGATATCCATTCCCAGATTATTAGTATTATTCTTGTATCCTTAAATTTTTATTCCTACCTGTTATTTCTTTAGCCTCGATTATTATACTATCTTGTTGTTGTATCTGCTTGTTGCTACTGCTTTCTTTTACATCTTTCTTTGAGTTGAGGGTCTATCTTAAACAAATCTATACCTTCTCAAGGTAGAGGTGAGGTCTGCGTACACTTTACCCTTCCAAAGACCCCCCCACGCCTGAGATTAGACCAAGTTTGTTGTGAGTGCACATTAGAAGTTTGTGGTGTCTAAATTGGCCTTGTTGTTTTTCTCCCTCAGTTCCTCCTTAGTTATATGTTTTCACTGAAAGGGGGAAATTATATGCATCCTTCTGAATTTATTTTGTAAAACTTCAGGTCTCTTCCAGAGTTGTCCCTTTTAAAGGAAACTTCAGTTAGAGGCCTCGTACTTTCGCCACCGAAGGCAAACGCCATAGCTGACCATTCAGTATGCGCTTCAAAAACTGGTGAACTCATAGTGGTATTGCACCGACACTTCAGGCTTTTTTCTGTTTCTAATGAGGTTTATATACCTTAAGCTCTAACTTAAACTCAAAAAATTATTTATGACTAGGTTGACAGGGATCAAGAAATGTTCTTCGTCTCAGTTTCCTTGCAAAATGACACCTTCAGGTGACAAATGTTTCAGCAACCAAATATTTTTTTTTTCATTTGACATTTCTTTTTGGCTTATTTCTGTGAAGGATTAATCGAACATAGTTGCATTCCCCACCTCCTTCACTTCCCACTGAGAATTCAATTATTTTATAAGAAATACAGTATCCCCTGCAATTCATAGTATTGCTGCATGATAGGTTCCTGGACTCTGCTTCTCATGTTTATGATAGAGATTTAGTGGTTGAACCAGGGAAGATCTATGCACCCATCATCCAAAAAGAAAAGA</genome_strand>
        <mrna_strand>TCATCACTATGCAGTTCAACACGTGTAGCTNGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAATCTTGGCCCTTGAGACAGAAACAGGAAATATACTAAGCCCTTCCAGTGTTCATCCAAAGAAACCTTCCAGAGCTTTATTTATGCAGATTTTGG.............................................................................................................ATGGACAAGAAATGTCTGGTCGAGGATTAAGCATTTTAGATGGTATAGACATGATTAAGGGGAATTCGGATAATATTGCATCAAAGCAACCGTTAGTATTGATTTGTTCTGAAAAAGCTGTGTATGTCTATTCCTTATTGCATATTATTCAG........................................................................................GGTATTAAGAAAGTATACTACAAAAAGAAGTTTCATTCCTCTCTGTGTTGCTGGGCATCAACATTTGACACACCTGAGGCCGGCCTTATGCTTCTCTTCTCGAATGGAAAGATTGAGATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTCCAGAGTTGTCCCTTCTAAAGGAAACTTCAGTTAGAGGCCTCGTACTTTCGCCGCCGAAGGCAAACGCCATAGCTGACCATTCAGTATGCGCGTCAAAAACTGGTGAACTCATAGTG.............................................................................................GTTGACAGGGATCAAGAAATGTTCTTCGTCTCAGTTTCCTTGCAAAATGACACCTTCAG......................................................................................................................................................................................GTTCCTGGACTTTGCTTCCCATGTTTACGATAGAGATCTAGTGGTTGAACCAGGGAGGATCTCTGCACCCATCATCCAAAAAAGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551548" ref_strand="+" ref_description="SGN-E551548 [cTSB-1-B16]">
      <seq>agtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactctggggggggggggggggcccccttcccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105522" stop="87544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105222" g_stop="105170" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="98" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="179" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="263" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104558" g_stop="104311" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="511" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104310" i_stop="103258" i_length="1053">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103257" g_stop="103226" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="543" r_length="32" r_score="0.750"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103225" i_stop="102445" i_length="781">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102444" g_stop="102428" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="560" r_length="17" r_score="0.471"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102427" i_stop="101999" i_length="429">
            <donor d_prob="0.294" d_score="0.00"/>
            <acceptor a_prob="0.385" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101998" g_stop="101993" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="566" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="101992" i_stop="101842" i_length="151">
            <donor d_prob="0.819" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="101841" g_stop="101819" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="589" r_length="23" r_score="0.565"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="101818" i_stop="101261" i_length="558">
            <donor d_prob="0.098" d_score="0.00"/>
            <acceptor a_prob="0.264" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="101260" g_stop="101238" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="612" r_length="23" r_score="0.478"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E551548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105222" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104311"/>
          <exon e_start="103257" e_stop="103226"/>
          <exon e_start="102444" e_stop="102428"/>
          <exon e_start="101998" e_stop="101993"/>
          <exon e_start="101841" e_stop="101819"/>
          <exon e_start="101260" e_stop="101238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAACGGTAACTTTCTGCTAATTTTATTTATGGTGTTTGGGTCCCGATCTGATTCTCGCTAGAAATTTCCATTTCCATGTGATTTTCACATTTGTGTAAACAGGAAATAGGATTCTATAGTCGATTAGAACACGTGGTTATTATTTTAATAGTCGTATGTGAATCTTCAAGAGTGGGAGTTATCTAGCTGTGAGTTAACGTGTGTGACAGATAGAGTAATGTACTAATTTATTAAGTTTCAGAATGGCCAGCCATTTGAATCTTGGCATTAAGATATTCCATTTGCTTGTGCAGTAGTTCAAGTGTCTATAATTTTGCCTATATCGTTCCTTTTGGCATATGGGACCATTTCCTTGTTCATATCCTCTCAGTTGACCAATTATTCGTATTTCAGTGTTATTCTCCAATATGATGACAGATGTTTAACTAGGTGTAATCAAAACACAACTTCAATAGAAGAGTCTCTTAGAAGCCTCAGTACCTATAGAGTTAAACTATCACCTTCTCCATCCATATCCCCAGAACGAGGACTCGATCAAAATAAGCCCTCATAAATCTGCTTCCATACTGGGGATGTCCAAGGCTTGTATACAAATATGTTTCTCTTACCGAGTGTCCTCCGTTTTTCTCAACACAAATAAATCTCTCTTTCAATTTTATGTAGGGATTGATAGACATTTGCTGCAAACTTGAGAAAGCGCTTAGAGGGGAATGAATGATTCTGCTCTCGCCTTCTTACTGTTCTCGTGTTTTCACTATCCCAGTGAAAATTGTGAATCAGATGCAGATATTTCTACATGCATGTATGGATATCAGATTGTACTGAGCTGCAAATACAAATACATTAATAACCTTCAATTTACATAAAAGACGGATCAACATGACTTCATACTGGGAAACACTGTCTACCCCTAAAAACTAGCGTCTCTGTGAAAGAATCATATCAAATGTTGTGTGCCATTTACATATATATATAATAAATAAAAGAAAGAAGAAAAGAAAATCTCCAACTCCAAGTCTCATTGAAATGAATAAATAGGTAAAACATCAAGAAAAATACTCAGAATTGTAATTTACTATACATTTCCAGCAAAACATCTTTGTGTGGAGTGAAGCAATCACGAATTTGCTTTGTCATTTCCAGAAAATCGCAACACCTCTTTAGCCATGGAAGAAAATGACTTGGCTTGGTCCTGCATCTCAGCACTTCTAATGTTGATGCCCTGCACATGCAAATTTACAAAACTTCACTACCTTCTCTGTTCTGCTTGCTTCTAACTTAGATAATCTAAAACATAGACAAAGAACCCTTTCAAATTTATAAGCAATATTCCCTTTTGCCATACAAAATCATGTAGGGTAAACTCAGTTTTGAAAATATGTCCATGAGTAATGAGAGTCACCATATAGTACCTGCAACTTCTTCAGATTTTCACTGAGCTTTGACTTTGCTGCCTCTGTAGCACTGGGTTCCTGCAATCAACATAGGAAAATTTTCTTACAAATGTTAGCTTGCCATGGAACTACATGCAACTCAACATCTCAGTCAAATTGCTAAAATAGTTGAAATAAGGATTGATTGTTGGAGTTTACTGGCTTACTGCCCAACAGGTAGGAAGTTAAAGGGATGCTAATAAACATTGTTTATTTCTCAACAAATATATCTTTCTCACTCTCTTTTCAATTAGACAAAACATTGTTTATTTCTCAACAAATATATCTTTCTCACTCTCTTTTCAATTAGACAAAACAAATTTAATGCCCTTACTTACTCTTCCTCAAGCCAAACAAACTGGGAATGCAGGAAAGAGAACTTACAGCTGAAGCAGTATACCCATATCTTTTCTTAATTTGACCAACAGTATCTGCCTTGTCATCTTGTGGTGCATCATTTATCGGGGCTTTATCGTTTTTGACCTTCATGGGCATAAACTTTCCTGTAAAAAGAAGAGCAATGATTTTTAAATGAAAAATATGAAAATGATGTAGAACTACTGGTCATTCAGCACAGTGTTATTAAGTGTAGTAGAAAAGCTATCTAAATAAAGATGGGAAAACCGAATAACTGGTGAATGGAGATTTGCGAGACAGCACTAATATTACTTAGTTGAAAGCTGAAAGTGTCAATAAAACTTCCAAGTATATTAAGAAAAGGCAGATAACGACTGATGGGAAAGCCTAAAACTAAAGAATGTAGACTCATGAGATTGCATTATCATTACACTGCAGAAAGATGTAAGTGTTGATAAGTATCAACTTCTTCACTCTAATAACTTACCTTTCAGAGCCTGAAATGTATTTGTAAGGTTCTGCTTGTTTAGTGCTGCAACCATTGGATTTCCCTTCTGTTTCTCTACTGGATCTTCAATTTCAATGTCATCTTAAGGGAAAACAGAAACTTAGCAGCAGGTAGTTGCATAGTTTGAAAAAGCAAAAAAGGGTAAACTATGAGCAACTCTTTAATGTAATGCTCTCCAGAATTTCATCAACCGGAACTTTTCATGAAAATATAAAATAGTTCAGCAAGTTAAATTGCAACTCTTTTAGGTTGTTATTTCTTTACTATTCTCACTTCCACTTTCTTCTGCGTCTGATTTTCAGTTTAGTCTGAGAAGAGCATTATGAGGCCCTTATCATGGCGTTGCCAGGTATTCAGTTCAATGGAAGAAGTGAATGATGAAGAAGCGGACAACCATTATAAGAGATAACCTATACCTATATCCAAGTCAGCATCCTTTTCGTTCCTGCCTAACTTCTCTTCACTGTGGGTGAGTGATGGAAAGTTGTCAGCTGAAAATATTGCAGACATCTCTTCAATACTTGCTCTTGCATTTTCAACTCCGGCGTCAGGCACATTGTTTGCCTTATTTCCCTTGGCATCTTTGAAAACAGATCCAAAAATTCCCTACAGTCAAGAATGTCAAAGAAATTATTTAATAATGACTGAAGGTTAACTTAAAATTTCAGAGGTAGGAGAACCCAACCTTTTT</genome_strand>
        <mrna_strand>AGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA.......................................................................................................................................................AAAAAAAAAAAACTCTGGGGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGGGCCCCCTTCCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251903" ref_strand="-" ref_description="SGN-E251903 [cLEG-14-E7]">
      <seq>agaagggaaatccaatggttgcagcactaaacaagcagaaccttacaaatacatttcaggctctgaaaggaaagtttatgcccatgaaggtcaaaaacgataaagccccgataaatgatgcaccacaagatgacaaggcagatactgttggtcaaattaagaaaagatatgggtatactgcttcagctgaacccagtgctacagaggcagcaaagtcaaagctcagtgaaaatctgaagaagttgcagggcatcaacattagaagtgctgagatgcaggaccaagccaagtcattttcttccatggctaaagaggtgttgcgattttctggaaatgacaaagcaaattcgtgattgcttcactccacacaaagatgttttgctggaaatgtatagtaaattacaattctgagtatttttcttgatgttttacctatttattcatttcaatgagacttggagttggagattttcttttcttctttcttttatttattatatatatatgtaaatggcacacaacatttgatatgattctttcacagagacgctagtttttaggggtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="101581" stop="103623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101881" g_stop="101949" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101950" i_stop="102290" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102291" g_stop="102409" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="188" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102410" i_stop="102754" i_length="345">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102755" g_stop="102814" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="248" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102815" i_stop="103004" i_length="190">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103005" g_stop="103324" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="568" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E251903" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251903" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101881" e_stop="101949"/>
          <exon e_start="102291" e_stop="102409"/>
          <exon e_start="102755" e_stop="102814"/>
          <exon e_start="103005" e_stop="103324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGAAATCCAATGGTTGCAGCACTAAACAAGCAGAACCTTACAAATACATTTCAGGCTCTGAAAGGTAAGTTATTAGAGTGAAGAAGTTGATACTTATCAACACTTACATCTTTCTGCAGTGTAATGATAATGCAATCTCATGAGTCTACATTCTTTAGTTTTAGGCTTTCCCATCAGTCGTTATCTGCCTTTTCTTAATATACTTGGAAGTTTTATTGACACTTTCAGCTTTCAACTAAGTAATATTAGTGCTGTCTCGCAAATCTCCATTCACCAGTTATTCGGTTTTCCCATCTTTATTTAGATAGCTTTTCTACTACACTTAATAACACTGTGCTGAATGACCAGTAGTTCTACATCATTTTCATATTTTTCATTTAAAAATCATTGCTCTTCTTTTTACAGGAAAGTTTATGCCCATGAAGGTCAAAAACGATAAAGCCCCGATAAATGATGCACCACAAGATGACAAGGCAGATACTGTTGGTCAAATTAAGAAAAGATATGGGTATACTGCTTCAGCTGTAAGTTCTCTTTCCTGCATTCCCAGTTTGTTTGGCTTGAGGAAGAGTAAGTAAGGGCATTAAATTTGTTTTGTCTAATTGAAAAGAGAGTGAGAAAGATATATTTGTTGAGAAATAAACAATGTTTTGTCTAATTGAAAAGAGAGTGAGAAAGATATATTTGTTGAGAAATAAACAATGTTTATTAGCATCCCTTTAACTTCCTACCTGTTGGGCAGTAAGCCAGTAAACTCCAACAATCAATCCTTATTTCAACTATTTTAGCAATTTGACTGAGATGTTGAGTTGCATGTAGTTCCATGGCAAGCTAACATTTGTAAGAAAATTTTCCTATGTTGATTGCAGGAACCCAGTGCTACAGAGGCAGCAAAGTCAAAGCTCAGTGAAAATCTGAAGAAGTTGCAGGTACTATATGGTGACTCTCATTACTCATGGACATATTTTCAAAACTGAGTTTACCCTACATGATTTTGTATGGCAAAAGGGAATATTGCTTATAAATTTGAAAGGGTTCTTTGTCTATGTTTTAGATTATCTAAGTTAGAAGCAAGCAGAACAGAGAAGGTAGTGAAGTTTTGTAAATTTGCATGTGCAGGGCATCAACATTAGAAGTGCTGAGATGCAGGACCAAGCCAAGTCATTTTCTTCCATGGCTAAAGAGGTGTTGCGATTTTCTGGAAATGACAAAGCAAATTCGTGATTGCTTCACTCCACACAAAGATGTTTTGCTGGAAATGTATAGTAAATTACAATTCTGAGTATTTTTCTTGATGTTTTACCTATTTATTCATTTCAATGAGACTTGGAGTTGGAGATTTTCTTTTCTTCTTTCTTTTATTTATTATATATATATGTAAATGGCACACAACATTTGATATGATTCTTTCACAGAGACGCTAGTTTTTAGGGGTAGAC</genome_strand>
        <mrna_strand>AGAAGGGAAATCCAATGGTTGCAGCACTAAACAAGCAGAACCTTACAAATACATTTCAGGCTCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................GAAAGTTTATGCCCATGAAGGTCAAAAACGATAAAGCCCCGATAAATGATGCACCACAAGATGACAAGGCAGATACTGTTGGTCAAATTAAGAAAAGATATGGGTATACTGCTTCAGCT.........................................................................................................................................................................................................................................................................................................................................................GAACCCAGTGCTACAGAGGCAGCAAAGTCAAAGCTCAGTGAAAATCTGAAGAAGTTGCAG..............................................................................................................................................................................................GGCATCAACATTAGAAGTGCTGAGATGCAGGACCAAGCCAAGTCATTTTCTTCCATGGCTAAAGAGGTGTTGCGATTTTCTGGAAATGACAAAGCAAATTCGTGATTGCTTCACTCCACACAAAGATGTTTTGCTGGAAATGTATAGTAAATTACAATTCTGAGTATTTTTCTTGATGTTTTACCTATTTATTCATTTCAATGAGACTTGGAGTTGGAGATTTTCTTTTCTTCTTTCTTTTATTTATTATATATATATGTAAATGGCACACAACATTTGATATGATTCTTTCACAGAGACGCTAGTTTTTAGGGGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234480" ref_strand="-" ref_description="SGN-E234480 [cLEL-8-O8](-)">
      <seq>ttttttttttttttttttttggttttttttttattttttcccaggctaaattttcattaacatcagcaaaatagagaaattacataaactacttgagctttaaaggcaagtcatttgaatttcacctttatgtccaaactaaaccctcaaagaacaaaaactagacaaaaaatgtaaaaaaagagggcatttatttatcaaggaaggactgagcaattcctacatgaacttatccatcattctttgaatttaaacagcctactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="+" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="79955" stop="104839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103225" g_stop="103262" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.711"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103263" i_stop="104312" i_length="1050">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104313" g_stop="104539" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="265" r_length="227" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="+" ref_id="SGN-E234480" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103225" e_stop="103262"/>
          <exon e_start="104313" e_stop="104539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTCTTCTTTCTTTTATTTATTATATATATATGTAAATGGCACACAACATTTGATATGATTCTTTCACAGAGACGCTAGTTTTTAGGGGTAGACAGTGTTTCCCAGTATGAAGTCATGTTGATCCGTCTTTTATGTAAATTGAAGGTTATTAATGTATTTGTATTTGCAGCTCAGTACAATCTGATATCCATACATGCATGTAGAAATATCTGCATCTGATTCACAATTTTCACTGGGATAGTGAAAACACGAGAACAGTAAGAAGGCGAGAGCAGAATCATTCATTCCCCTCTAAGCGCTTTCTCAAGTTTGCAGCAAATGTCTATCAATCCCTACATAAAATTGAAAGAGAGATTTATTTGTGTTGAGAAAAACGGAGGACACTCGGTAAGAGAAACATATTTGTATACAAGCCTTGGACATCCCCAGTATGGAAGCAGATTTATGAGGGCTTATTTTGATCGAGTCCTCGTTCTGGGGATATGGATGGAGAAGGTGATAGTTTAACTCTATAGGTACTGAGGCTTCTAAGAGACTCTTCTATTGAAGTTGTGTTTTGATTACACCTAGTTAAACATCTGTCATCATATTGGAGAATAACACTGAAATACGAATAATTGGTCAACTGAGAGGATATGAACAAGGAAATGGTCCCATATGCCAAAAGGAACGATATAGGCAAAATTATAGACACTTGAACTACTGCACAAGCAAATGGAATATCTTAATGCCAAGATTCAAATGGCTGGCCATTCTGAAACTTAATAAATTAGTACATTACTCTATCTGTCACACACGTTAACTCACAGCTAGATAACTCCCACTCTTGAAGATTCACATACGACTATTAAAATAATAACCACGTGTTCTAATCGACTATAGAATCCTATTTCCTGTTTACACAAATGTGAAAATCACATGGAAATGGAAATTTCTAGCGAGAATCAGATCGGGACCCAAACACCATAAATAAAATTAGCAGAAAGTTACCGTTGATTCAATAATATTAAAACGAAAACAAGAAGATACTATTTAGCATCAAATATGATAAACTGAAATGTATACTAGCAACAGAAGGAATTTCCAAGCTAAATTTTCATTAACATCAGCAAAATAGAGAAATTACATAAACTACTTGAGCTTTCAAGGCAAGTCATCTGAATTTCACCTTTCTGTCCAAACTAAACCCTCAAAGAACAAAAACTAGACAAAAAATGTAAAAAAAGAGGGCATCTATTTATCAAGGAAGGACTGAGCAATTCCTACATGAACTTATCCATCATTCTCTGAATTTCAACAGCCTACTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTATTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGGCTAAATTTTCATTAACATCAGCAAAATAGAGAAATTACATAAACTACTTGAGCTTTAAAGGCAAGTCATTTGAATTTCACCTTTATGTCCAAACTAAACCCTCAAAGAACAAAAACTAGACAAAAAATGTAAAAAAAGAGGGCATTTATTTATCAAGGAAGGACTGAGCAATTCCTACATGAACTTATCCATCATTCTTTGAATTTAAACAGCCTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217766" ref_strand="+" ref_description="SGN-E217766 [cLEL-23-C23](-)">
      <seq>ggcaccagaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="104843" stop="87544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104549" g_stop="104313" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104312" i_stop="103798" i_length="515">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.323" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103797" g_stop="103773" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="262" r_length="25" r_score="0.520"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E217766" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104549" e_stop="104313"/>
          <exon e_start="103797" e_stop="103773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAACGGTAACTTTCTGCTAATTTTATTTATGGTGTTTGGGTCCCGATCTGATTCTCGCTAGAAATTTCCATTTCCATGTGATTTTCACATTTGTGTAAACAGGAAATAGGATTCTATAGTCGATTAGAACACGTGGTTATTATTTTAATAGTCGTATGTGAATCTTCAAGAGTGGGAGTTATCTAGCTGTGAGTTAACGTGTGTGACAGATAGAGTAATGTACTAATTTATTAAGTTTCAGAATGGCCAGCCATTTGAATCTTGGCATTAAGATATTCCATTTGCTTGTGCAGTAGTTCAAGTGTCTATAATTTTGCCTATATCGTTCCTTTTGGCATATGGGACCATTTCCTTGTTCATATCCTCTCAGTTGACCAATTATTCGTATTTCAGTGTTATTCTCCAATATGATGACAGATGTTTAACTAGGTGTAATCAAAACACAACTTCAATA</genome_strand>
        <mrna_strand>GGCACCAGAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217892" ref_strand="+" ref_description="SGN-E217892 [cLEL-23-P1](-)">
      <seq>aggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattccttctgttgctagtatacatttcagtttatcatatttgatgctaaatagtatcttcttgttttcgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="104857" stop="80077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104557" g_stop="104223" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E217892" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104557" e_stop="104223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAAC</genome_strand>
        <mrna_strand>AGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218248" ref_strand="+" ref_description="SGN-E218248 [cLEL-23-P1](-)">
      <seq>agttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattccttctgttgctagtatacatttcagtttatcatatttgatgctaaatagtatcttcttgttttcgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="104804" stop="80077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104504" g_stop="104223" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E218248" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104504" e_stop="104223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAAC</genome_strand>
        <mrna_strand>AGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357528" ref_strand="+" ref_description="SGN-E357528 [cTOS-23-F19]">
      <seq>gagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattccttctgttgctagtatacatttcagtttatcatatttgatgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105502" stop="103961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105202" g_stop="105170" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="78" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="159" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="243" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104558" g_stop="104256" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="546" r_length="303" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E357528" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105202" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATC</genome_strand>
        <mrna_strand>GAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716692" ref_strand="+" ref_description="SGN-E716692 [FB17DB02]">
      <seq>catcgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattccttctgttgctagtataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106039" stop="103990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="105692" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.98"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="94" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="254" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="299" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="380" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="464" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104291" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="732" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="743"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E716692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATAC</genome_strand>
        <mrna_strand>CATCGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734975" ref_strand="+" ref_description="SGN-E734975 [LB14AD06]">
      <seq>gcaatgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106040" stop="104005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105740" g_stop="105692" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.98"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="95" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="300" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="465" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104304" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="720" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="731"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E734975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105740" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCT</genome_strand>
        <mrna_strand>GCAATGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346542" ref_strand="+" ref_description="SGN-E346542 [cTOF-28-C2]">
      <seq>ggcaacgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattntttgtctagtttttgttctttgaaggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaaattagcttggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106041" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105741" g_stop="105692" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="96" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="256" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="301" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="466" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104306" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="719" r_length="253" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E346542" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105741" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTT</genome_strand>
        <mrna_strand>GGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTNTTTGTCTAGTTTTTGTTCTTTGAAGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAAATTAGCTTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732327" ref_strand="+" ref_description="SGN-E732327 [LB01DE05]">
      <seq>atccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106028" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105728" g_stop="105692" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="83" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="185" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="243" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="288" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="369" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="453" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104312" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="700" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E732327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105728" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAA</genome_strand>
        <mrna_strand>ATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576651" ref_strand="+" ref_description="SGN-E576651 [59902]">
      <seq>cacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggagtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttcccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggggtttagtttggacagaaaagtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattatgttggggttaatgaaaaattcagcttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106023" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="87" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="189" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="247" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="292" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="373" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="460" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104312" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="712" r_length="252" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E576651" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTT--GAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATG-AAAATTTAGCTTGGAAA</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGAGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGGGTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTATGTTGGGGTTAATGAAAAATTCAGCTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713510" ref_strand="+" ref_description="SGN-E713510 [FB08DD03]">
      <seq>acattacatgttatttctcgctccccttcatataaaccccttttcccattcacaactcaacacttacaaagcaacccaccaaatccacacaaaacgaataatatccaattctctctaaaggtttcatcatgaaaggagctaaatcaaaggctagagctgataccaagactaggtgtaaggaacaaggctactgaaagtaagaaggcgaagaacgctgctaatgatccaaacaaccctaagaagcctccaagtgccttcttcgttttcatggaggagtttaagaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaacctggtggagacaactggaaacagttgtcacatgaagagaaagctccttaccaagccaaggctgacaacaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106103" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105809" g_stop="105692" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.92"/>
            <acceptor a_prob="0.547" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="166" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="269" r_length="103" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="327" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="372" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="453" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="537" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="783" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="797"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E713510" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105809" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCTTGTTATTTCTCGCTCCCCTTCATATAGACCCC-TTTCCCATTCACAACTCAACACTTACAAGGCAACGCACCAAATCCACACAA-ACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGG-CTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>ACATTACATGTTATTTCTCGCTCCCCTTCATATAAACCCCTTTTCCCATTCACAACTCAACACTTACAAAGCAACCCACCAAATCCACACAAAACGAATAATATCCAATTCTCTCTAAAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAGAGCTGATACCAA...................................................................................................................................GACTAGGTGTAAGGAACAAGGCTACTGAAAGTAAGAAGGCGAAGAACGCTGCTAATGATCCAAACAACCCTAAGAAGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAAGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAACCTGGTGGAGACAACTGGAAACAGTTGTCACATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGACAACAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717478" ref_strand="+" ref_description="SGN-E717478 [FC01BD06]">
      <seq>gggcgattggcggccaatcggccgaattgaacacttacaaggcaacgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaanaaaaannnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106057" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105754" g_stop="105692" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="90" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="136" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="238" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="296" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="341" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="422" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="506" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="752" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="764" polyA_stop="777"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E717478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105754" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>TGAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689562" ref_strand="+" ref_description="SGN-E689562 [LH_Ea01D16]">
      <seq>catgtaacgcaccaaatccacgcaaacgaataatatccaactctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggaattcaggaagacctacaaggagaagcacccaaataacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcgtataacaaaaaactggctgctggtgatgctgatgatgaggagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggaggatgattaaacaatcagtaggctgtcgaaattcagagaatgatggataagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctcttttttacatttttttgtttagtttttgttctttgggggtttagtttggacagagttgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttgggaaaanaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106042" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105743" g_stop="105692" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.92"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="98" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="200" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="258" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="303" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="384" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="471" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="718" r_length="247" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="735"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E689562" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105743" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGAT---GAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACA-TTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CATGTAACGCACCAAATCCACGCAAACGAATAATATCCAACTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAATTCAGGAAGACCTACAAGGAGAAGCACCCAAATAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCGTATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGAGGATGATTAAACAATCAGTAGGCTGTCGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC-TTTTTTACATTTTTTTGTTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAG--AGTTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746238" ref_strand="+" ref_description="SGN-E746238 [GI|47104816]">
      <seq>caacgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106039" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="105692" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="94" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="254" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="299" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="380" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="464" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="710" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="725"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E746238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693402" ref_strand="+" ref_description="SGN-E693402 [LH_Ea01D16](-)">
      <seq>aacgcaccaaatccacgcaaacgaataatatccaactctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgcctttttcgttttcatggaggaattcaggaagacctacaaggagaagcacccaaataacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcgtataacaaaaaactggctgctggtgatgctgatgatgaggagtttgacaagtccaagtttgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggaggatgattaaacaatcagtaggctgtcgaaattcagagaatgatggataagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctcttttttacatttttttgtttagtttttgttctttgggggtttagtttggacagagttgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttacgggtgttaatgaaaatttagctgggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106038" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105738" g_stop="105692" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.96"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="93" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="195" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="253" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="298" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="379" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="466" r_length="87" r_score="0.905"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="713" r_length="247" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="731"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E693402" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105738" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGAT---GAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACA-TTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>AACGCACCAAATCCACGCAAACGAATAATATCCAACTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTTTTCGTTTTCAT......................................................................................GGAGGAATTCAGGAAGACCTACAAGGAGAAGCACCCAAATAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCGTATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAGTTTGACAAGTCCAAGTTTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGAGGATGATTAAACAATCAGTAGGCTGTCGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC-TTTTTTACATTTTTTTGTTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAG--AGTTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTACGGGTGTTAATGAAAATTTAGCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712906" ref_strand="+" ref_description="SGN-E712906 [FB06AF04]">
      <seq>caccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaanaaaaanaaaaaaaaaaaaaaaaaaaaannnccttgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106034" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105734" g_stop="105692" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="89" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="191" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="249" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="294" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="375" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="459" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="705" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="716"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E712906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105734" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704083" ref_strand="+" ref_description="SGN-E704083 [FA23BC05]">
      <seq>accaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgcttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106033" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105733" g_stop="105692" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="88" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="190" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="248" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="374" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="458" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="703" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="744"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E704083" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105733" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>ACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTG-CTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692084" ref_strand="+" ref_description="SGN-E692084 [LH_Ea07M18]">
      <seq>ccgttaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggaattcaggaagacctacaaggagaagcacccaaataacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcgtataacaaaaaactggctgctggtgatgctgatgatgaggagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggaggatgattaaacaatcagtaggctgtcgaaattcagagaatgatggataagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctcttttttacatttttttgtttagtttttgttctttgggggtttagtttggacagagttgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttgggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105863" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105565" g_stop="105547" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="121" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="179" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="224" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="305" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="639" r_length="247" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="654"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E692084" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105565" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGAT---GAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACA-TTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CCGTTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAATTCAGGAAGACCTACAAGGAGAAGCACCCAAATAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCGTATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGAGGATGATTAAACAATCAGTAGGCTGTCGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC-TTTTTTACATTTTTTTGTTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAG--AGTTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350175" ref_strand="+" ref_description="SGN-E350175 [cTOS-4-A22]">
      <seq>ccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105657" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105357" g_stop="105314" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="102" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="147" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="228" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="312" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="558" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E350175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105357" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714539" ref_strand="+" ref_description="SGN-E714539 [FB11CH11]">
      <seq>aggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105504" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105204" g_stop="105170" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="80" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="161" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="245" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="491" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="510"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E714539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105204" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>AGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227518" ref_strand="+" ref_description="SGN-E227518 [cLEL-30-B5](-)">
      <seq>atctgttgctgttgttggcaaagctggtggagacaagtggaaacagtttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105369" stop="104010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105182" g_stop="105170" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="59" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="140" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="224" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="470" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="492"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E227518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105182" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAG-TTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>ATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546317" ref_strand="+" ref_description="SGN-E546317 [TUS-69-J23](-)">
      <seq>tttgtgttttgaccttttgcttaattgatttttgttcactaaattgtagttggcaaagctggtggagacaagtggaaacagttgtcagatgaagtgagtataagcctcaaatcatatactggaaaattctattcgagttgactttttgactttatgcgttttgtcttcaaacgaactatgcactgaagttctgctttgtttttaactttgctttaggagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcgtataacaaaaaactggtaaatactttatcctcactgatgtaaccttagtgtgttcatggtctgctttttctatttctaatttttaatttaatccgatgcaacacaggctgctggtgatgctgatgatgaggagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggttcgtatttacgagtctaattatcgtctattagtttgatgattttttctgatttgtgagttcttatgatgatttttattcatgtttgcacaggaggatgatgattaaacaatcagtaggctgtcgaaattcagagaatgatggataagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctcttttttacatttttttgtttagtttttgttctttgggggtttagtttggacagaaagttgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttgggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105418" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105118" g_stop="104313" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="818" polyA_stop="847"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E546317" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105118" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTG---TT--C--T--TTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGAT---GAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACA-TTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>TTTGTGTTTTGACCTTTTGCTTAATTGATTTTTGTTCACTAAATTGTA-GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGCACTGAAGTTCTGCTTTGTTTTTAACTTTGCTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCGTATAACAAAAAACTGGTAAATACTTTATCCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCTATTTCTAATTTTTAATTTAATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTA--TTTACGAGTCTAATTATCGTCTATTAGTTTGATGATTTTTTCTGATTTGTGAGTTCTTAT-GATGATTTTTATTCATGTTTGCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTCGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC-TTTTTTACATTTTTTTGTTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAAGTTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349873" ref_strand="+" ref_description="SGN-E349873 [cTOS-3-F18]">
      <seq>ccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105196" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104896" g_stop="104830" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="151" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="397" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E349873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104896" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221732" ref_strand="+" ref_description="SGN-E221732 [cLEL-10-A14](-)">
      <seq>agccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105193" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104893" g_stop="104830" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="148" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="394" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="409"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E221732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104893" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>AGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229396" ref_strand="+" ref_description="SGN-E229396 [cLEL-4-L5](-)">
      <seq>agtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctcttttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105167" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104867" g_stop="104830" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="369" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="388"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E229396" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104867" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTC-TTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>AGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227305" ref_strand="+" ref_description="SGN-E227305 [cLEL-30-B5](-)">
      <seq>agtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaattaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105167" stop="104010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104867" g_stop="104830" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="368" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="390"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E227305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104867" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>AGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221665" ref_strand="+" ref_description="SGN-E221665 [cLEL-10-A14](-)">
      <seq>caaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105162" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104862" g_stop="104830" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="117" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="363" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="378"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E221665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104862" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230644" ref_strand="+" ref_description="SGN-E230644 [cLEL-35-O20](-)">
      <seq>ggcacgagatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggncgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105155" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104856" g_stop="104830" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="112" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="358" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="374"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E230644" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104856" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATG-GATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>GGCACGAGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGNCGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230718" ref_strand="+" ref_description="SGN-E230718 [cLEL-35-O20](-)">
      <seq>ggccgagangcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105150" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104856" g_stop="104830" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="111" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="357" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="373"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E230718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104856" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>GGCCGAGANGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230150" ref_strand="+" ref_description="SGN-E230150 [cLEL-33-A9](-)">
      <seq>caagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaaaaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaataaatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105009" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104709" g_stop="104655" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104558" g_stop="104313" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="301" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="317"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E230150" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104709" e_stop="104655"/>
          <exon e_start="104558" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAAAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAAATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218266" ref_strand="+" ref_description="SGN-E218266 [cLEL-23-C23](-)">
      <seq>cagaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaatttagcttggaaatttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="104843" stop="104008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104544" g_stop="104313" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="238" polyA_stop="257"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E218266" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104544" e_stop="104313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</genome_strand>
        <mrna_strand>CAGAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721745" ref_strand="+" ref_description="SGN-E721745 [FC15AE11]">
      <seq>aatcggccgaattgacttacaaggcaacgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaaaaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106049" stop="104022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105749" g_stop="105692" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="72" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="118" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="220" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="278" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="323" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="404" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="488" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104322" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="725" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E721745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105749" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTT</genome_strand>
        <mrna_strand>ACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAAAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602753" ref_strand="-" ref_description="SGN-E602753 [55825]">
      <seq>acaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttaccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggtttagtttggacagaaaagtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattatgttggtgttaatgaaaaattcagcttgggaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105507" stop="104012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105207" g_stop="105170" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="83" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="164" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="251" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104558" g_stop="104326" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="486" r_length="235" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="522"/>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E602753" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602753" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105207" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAA</genome_strand>
        <mrna_strand>ACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTATGTTGGTGTTAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309108" ref_strand="+" ref_description="SGN-E309108 [cLEZ-1-C13]">
      <seq>cacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgatgttaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106025" stop="104027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105725" g_stop="105692" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="80" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="182" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="240" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="285" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="366" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="450" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104327" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="682" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E309108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105725" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAA</genome_strand>
        <mrna_strand>CACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624206" ref_strand="+" ref_description="SGN-E624206 [GI|2894108]">
      <seq>cccactcacaactcaacacacacaaagcaacgcaccaaatccacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaacaggaggatgatgattaaacaatcagtaggctgttgaaattcataaaatggtggagaagttcatgtaggaattgctatcagtccttaccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggtttagtttggacagaaaagtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattatgttggtgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106066" stop="104030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105766" g_stop="105692" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105602" i_length="90">
            <donor d_prob="0.769" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105601" g_stop="105547" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="130" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="232" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="290" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="416" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="503" r_length="87" r_score="0.917"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104330" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="734" r_length="231" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E624206" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105766" e_stop="105692"/>
          <exon e_start="105601" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTCACAACTCAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAAT</genome_strand>
        <mrna_strand>CCCACTCACAACTCAACACACACAAAGCAACGCACCAAATCCACACAAACGAATAATATCTCTCTGTTTCTACGC..........................................................................................TCTCTAGAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAACAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCATAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTATGTTGGTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454654" ref_strand="+" ref_description="SGN-E454654 [cSTS-24-A9]">
      <seq>atgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttaccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggtttagtttggacagaaaagtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattatgttggtgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105884" stop="104031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105584" g_stop="105547" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="140" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="198" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="243" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="324" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="411" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104331" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="641" r_length="230" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E454654" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105584" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAA</genome_strand>
        <mrna_strand>ATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTATGTTGGTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233901" ref_strand="+" ref_description="SGN-E233901 [cLEL-8-O8](-)">
      <seq>ggctgttgaaattccgagaatgatggataagttcatgtaggaattgctcagtccttccttgataaataaatgccctctttttttaccttttttgtctagtttttgttccttaagggtttagtttgggcagaaaggtgaaattcccatgacttgccttgaaagcccaagaagtttatgtaatttctctattttgctgatgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="104833" stop="104031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104533" g_stop="104331" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E233901" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104533" e_stop="104331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAA</genome_strand>
        <mrna_strand>GGCTGTTGAAATTCCGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAAATGCCCTCTTTTTTTACCTTTTTTGTCTAGTTTTTGTTCCTTAAGGGTTTAGTTTGGGCAGAAAGGTGAAATTCCCATGACTTGCCTTGAAAGCCCAAGAAGTTTATGTAATTTCTCTATTTTGCTGATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573004" ref_strand="+" ref_description="SGN-E573004 [32247]">
      <seq>gtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgagcgacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttaccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggtttagtttggacagaaaagtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattatgtaggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105708" stop="104033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105408" g_stop="105314" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="153" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="198" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="279" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="367" r_length="88" r_score="0.905"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104558" g_stop="104333" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="595" r_length="228" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E573004" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105408" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAG-GACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTT</genome_strand>
        <mrna_strand>GTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGCGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTATGTAGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284306" ref_strand="+" ref_description="SGN-E284306 [cLER-16-F10]">
      <seq>aaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106020" stop="104036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105720" g_stop="105692" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="75" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="177" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="235" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="280" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="361" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="445" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104336" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="668" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E284306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105720" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGAT</genome_strand>
        <mrna_strand>AAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272181" ref_strand="+" ref_description="SGN-E272181 [cLEN-4-D15]">
      <seq>aggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgtaatttctctattttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105894" stop="104036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105594" g_stop="105547" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="150" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="208" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="253" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="334" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="418" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104336" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="641" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E272181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105594" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGAT</genome_strand>
        <mrna_strand>AGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579781" ref_strand="+" ref_description="SGN-E579781 [86913]">
      <seq>cacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttaccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggtttagtttggacagaaaagtgaaattcagatgacttgccttgaaagcctcaagtatttatgtaatttctctattatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106025" stop="104038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="89" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="191" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="249" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="294" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="375" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="462" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104337" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="686" r_length="224" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E579781" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAG-CTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGA</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTTGAAAGCCTCAAGTA-TTTATGTAATTTCTCTATTATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452711" ref_strand="+" ref_description="SGN-E452711 [cSTS-17-P15]">
      <seq>accaaatccacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttgccttttataatagatgccctcttttttacatttttttttagtttttgttctttgggggtttagttttgacagaaaagtgaaattcagatgacttgccttngaagctcaagtagtttatgtaatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106033" stop="104048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="97" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="199" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="257" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="302" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="383" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="470" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104348" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="682" r_length="212" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E452711" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTC</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTGCCTTTTATAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGTTTAGTTTTGACAGAAAAGTGAAATTCAGATGACTTGCCTTNGAAGCTCAAGTAGTTTATGTAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373092" ref_strand="+" ref_description="SGN-E373092 [TUS-32-I19]">
      <seq>acaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctcttttttttacattttttgtctagtttttgttctttgagggtttagtttggacagaaaggtgaaattcagatgacttgccttgaaagctcaagtagtttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106022" stop="104055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105722" g_stop="105692" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="77" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="179" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="237" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="282" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="363" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="447" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104355" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="650" r_length="203" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E373092" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105722" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTC-TTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTA</genome_strand>
        <mrna_strand>ACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTC--AGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449492" ref_strand="+" ref_description="SGN-E449492 [cSTS-6-L23]">
      <seq>gccaaatccacacaaacgaataatatctctctgtttctactctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgaaaccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccctaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaatccagaaaatggtggagaagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctcttttttacattttttttagtttttgttctttgggggtttagtttggacagaaagtgaaattcagatgacttgccttgaaagctcaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106032" stop="104064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="97" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="199" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="257" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="302" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="383" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="470" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104364" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="664" r_length="194" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E449492" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTA</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGAAACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCCTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATCCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC-TTTTTTACATTTTTT-T-TAGTTTTTGTTCTTTGGGGGTTTAGTTTGGACAGAAA-GTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464179" ref_strand="+" ref_description="SGN-E464179 [cPRO-17-O23]">
      <seq>gcgccaaatccacacaaacgaataatatctctctgtttctactctctctagaggtaaaccctacggcgctttactcactgactcggtcgagtttttacccttttccgccggttcagcaccgattctcaacggttttcgtgttttcgttgcaggtttcatcatgaaaggagctaaatcaaaggctaaagctgaaaccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccctaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaacaggaggatgatgattaaacaatcagtaggctgttgaaatccagacaatggtggagaagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctcttttatacatttgtcttagtttttgctctttgcgggtttagtttgcacagaaagtgaaattcagatgacttgccttgaaagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106035" stop="104068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105702" g_stop="105547" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="198" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="300" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="358" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="403" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="484" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="571" r_length="87" r_score="0.917"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104368" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="761" r_length="190" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E464179" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105702" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCA</genome_strand>
        <mrna_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTGACTCGGTCGAGTTTTTACCCTTTTCCGCCGGTTCAGCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGAAACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCCTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAACAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATCCAGACAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC-TTTTATACA-TTTGTCT-TAGTTTTTGCTCTTTGCGGGTTTAGTTTGCACAGAAA-GTGAAATTCAGATGACTTGCCTTGAAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441976" ref_strand="+" ref_description="SGN-E441976 [cSTA-31-N1]">
      <seq>caaatccacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggagtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttcccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggggttttagtttggacagaaaagtgaaattcagatgacttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106031" stop="104077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="95" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="300" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="468" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104377" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="655" r_length="187" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E441976" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTT--GAGGG-TTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTT</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGAGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGGGTTTTAGTTTGGACAGAAAAGTGAAATTCAGATGACTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441977" ref_strand="+" ref_description="SGN-E441977 [cSTA-31-N1]">
      <seq>caaatccacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggagtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttcccttttataaatagatgccctcttttttacatttttttttagtttttgttctttgggggggtttagtttggacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106031" stop="104118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="95" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="300" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="468" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104402" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="629" r_length="161" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E441977" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTT--GAGGGTTTAGTTTGGACAGAA</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGAGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTTTATAAATAGATGCCCTC-TTTTTTACATTTTTT-TTTAGTTTTTGTTCTTTGGGGGGGTTTAGTTTGGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464256" ref_strand="+" ref_description="SGN-E464256 [cPRO-17-O22]">
      <seq>gcgccaaatccacacaaactaataatatctctctgtttctactctctctagaggtaaaccctacggcgctttactcactgactcggtcgagtttttacccttttccgccggttcagcaccgattctcaacggttttcgtgttttcgttgcaggtttcatcatgaaaggagctaaatcaaaggctaaagctgaaaccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccctaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaatccagaaaatggtggagaagttcatgtaggaattgctatcagtccttcccttgataaatagatgccctctttttacatttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106035" stop="104141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105702" g_stop="105547" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="198" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="300" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="358" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="403" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="484" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="571" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104438" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="693" r_length="122" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E464256" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105702" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTC</genome_strand>
        <mrna_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTGACTCGGTCGAGTTTTTACCCTTTTCCGCCGGTTCAGCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGAAACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCCTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATCCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTGATAAATAGATGCCCTC--TTTTTACATTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341274" ref_strand="+" ref_description="SGN-E341274 [cTOE-22-D7]">
      <seq>ccaaatccacacaaacgaattttatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctctttttttacatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106032" stop="104141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105732" g_stop="105692" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.95"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="87" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="189" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="247" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="292" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="373" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="457" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104441" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="575" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E341274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105732" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTT</genome_strand>
        <mrna_strand>CCAAATCCACACAAACGAATTTTATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570790" ref_strand="+" ref_description="SGN-E570790 [15429]">
      <seq>accaaatccacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaagtcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagttgaagaggaggatgatgattaaacaatcagtagggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttaccttttataaatagatgcctctttttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106033" stop="104174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="98" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="200" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="258" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="303" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="384" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="472" r_length="88" r_score="0.905"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104444" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="589" r_length="117" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E570790" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAA-TCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAG-TGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTA-GGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTTACATTT</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAAGTCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACCTTTTATAAATAGATG-CCTC--TTTTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577107" ref_strand="+" ref_description="SGN-E577107 [32832]">
      <seq>aaatccacacaaacgaataatatctctctgtttctacgctctctagaaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagcaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaaatggtggagaagttcatgtaggaattgctatcagtccttacttttataaatagatgccctctttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106030" stop="104152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="95" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="300" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="382" r_length="82" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="469" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104446" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="584" r_length="115" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E577107" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAG-AAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAG-AGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CCTTGATAAATAGATGCCCTCTTTTTTTACAT</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGCAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTACTTTTATAAATAGATGCCCTC--TTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287332" ref_strand="+" ref_description="SGN-E287332 [cLES-15-J15]">
      <seq>taaaaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtcctttcttgataaatagatgccctctttttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105556" stop="104146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105346" g_stop="105314" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="91" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="136" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104558" g_stop="104446" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="414" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E287332" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105346" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACAT</genome_strand>
        <mrna_strand>TAAAAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTTCTTGATAAATAGATGCCCTCTTTTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266968" ref_strand="+" ref_description="SGN-E266968 [cLEI-7-P13]">
      <seq>aaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagagaatgatggataagttcatgtaggaattgctcagtccttccttgataaatagatgccctcttttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106030" stop="104148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105730" g_stop="105692" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="85" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="187" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="245" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="290" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="371" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="455" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104448" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="565" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E266968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105730" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTAC</genome_strand>
        <mrna_strand>AAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTC-TTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567658" ref_strand="+" ref_description="SGN-E567658 [11818]">
      <seq>cacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagctttggagtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaagggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaattgctatcagtccttcccttttataaatagatagcctctttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106023" stop="104174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="87" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="190" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="248" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="375" r_length="82" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="462" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104450" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="575" r_length="113" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E567658" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGC-TTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAA-GGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGC--TCAGTCCTT-CC-TTGATAAATAGATGCCCTCTTTTTTT</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTTGGAGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAATTGCTATCAGTCCTTCCCTTTTATAAATAGATAGCCTCTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576055" ref_strand="+" ref_description="SGN-E576055 [59213]">
      <seq>tcacacaaacgaataatatctctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaggaatctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagtaggctgttgaaattcagaaaatggtggagaagttcatgtaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106025" stop="104191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="90" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="192" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="250" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="295" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="376" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="463" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104491" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="531" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E576055" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGA-G--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAA</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAAAATGGTGGAGAAGTTCATGTAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292904" ref_strand="+" ref_description="SGN-E292904 [cLET-11-P17]">
      <seq>acaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106022" stop="104234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105722" g_stop="105692" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="77" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="179" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="237" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="282" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="363" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="447" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104534" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="472" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E292904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105722" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTA</genome_strand>
        <mrna_strand>ACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462531" ref_strand="+" ref_description="SGN-E462531 [cPRO-12-A3]">
      <seq>ctctgtttctacgctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaagaatctgacaagtccaagtctgaagtacatgatgatgatgaagacgatgatggaagtgaagaagaagatgatgattaaacaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105905" stop="104235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="69" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="229" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="274" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="355" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="0.893"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104558" g_stop="104535" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="466" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E462531" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATG-AG--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGT</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAAGAATCTGACAAGTCCAAGTCTGAAGTACATGATGATGATGAAGACGATGATGGAAGTGAAGAA................................................................................................GAAGATGATGATTAAACAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357959" ref_strand="+" ref_description="SGN-E357959 [cLHT-32-C11]">
      <seq>ccaaatcacacaaacgaataatatccaactctctctagaggtttcatcatgaaaggagctaactcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggaattcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcgtataacaaaaaaactggctgctggtgatgctgatgatgaggagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgattaaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106032" stop="104238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105732" g_stop="105692" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.95"/>
            <acceptor a_prob="0.547" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="86" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="188" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="246" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="291" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="373" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="460" r_length="87" r_score="0.929"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104538" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="481" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E357959" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105732" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAAC-AAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGAT---GAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATC</genome_strand>
        <mrna_strand>CCAAAT-CACACAAACGAATAATATCCAACTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAACTCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAATTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCGTATAACAAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTAAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287512" ref_strand="+" ref_description="SGN-E287512 [cLES-9-M4]">
      <seq>aacgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtgaagaggaggatgatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106038" stop="104354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105738" g_stop="105692" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="93" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="195" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="253" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="298" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="379" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104655" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="463" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104558" g_stop="104545" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="477" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E287512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105738" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104655"/>
          <exon e_start="104558" e_stop="104545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTA</genome_strand>
        <mrna_strand>AACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG................................................................................................GAGGATGATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217091" ref_strand="-" ref_description="SGN-E217091 [cLEL-1-B7](-)">
      <seq>tgttcctgaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgacaagtccaagtctgaggtacatgatgatgatgaggacgatgatggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106033" stop="104360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105741" g_stop="105692" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.88"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="96" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="256" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="301" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104660" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="461" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E217091" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217091" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105741" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTG</genome_strand>
        <mrna_strand>TGTTCCTGACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445066" ref_strand="+" ref_description="SGN-E445066 [cSTA-44-H11]">
      <seq>tcaaacgaattatatctctctgtttctacgctctctggaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagcaccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagaacatggatgcatataacaaaaaactggctgctggtgatgctgatgatgaagaatctgacaagtccaagtctgaggtacatgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105901" stop="104377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="86" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="188" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="246" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="291" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="372" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104738" g_stop="104677" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="437" r_length="65" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E445066" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATG-AG--TCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGA</genome_strand>
        <mrna_strand>GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCACCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAACATGGATGCATATAACAAAAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAAGAATCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323557" ref_strand="+" ref_description="SGN-E323557 [cTOC-2-K9]">
      <seq>cgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagccaaggctgagaagaggaaggctgagtaccaaaagagcatggatgcatataacaagaaactggctgctggtgatgctgatgatgagtctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106036" stop="104409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105736" g_stop="105692" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="91" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="193" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="251" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="296" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104830" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="377" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104738" g_stop="104709" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="407" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E323557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105736" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104830"/>
          <exon e_start="104738" e_stop="104709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGAC</genome_strand>
        <mrna_strand>CGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG...........................................................................................GCTGCTGGTGATGCTGATGATGAGTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338195" ref_strand="+" ref_description="SGN-E338195 [cTOE-13-H24]">
      <seq>ggcaacgcaccaaatccacacaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatgaagagaaagctccttaccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106041" stop="104591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105741" g_stop="105692" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="96" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="256" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="301" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104910" g_stop="104891" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="321" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E338195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105741" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
          <exon e_start="104910" e_stop="104891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGC</genome_strand>
        <mrna_strand>GGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA..................................................................................................................GAGAAAGCTCCTTACCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546277" ref_strand="+" ref_description="SGN-E546277 [TUS-69-I23]">
      <seq>accaaatcacacaaacgaataatatccaactctctctagaggtaaaccctacggcgctttactcaatacctcggccgagttttcaccttttttccaccggttcatcaccgattctcaacggttttcgtgttttcgttgcaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagtgagtttgactttgttttagttgtggttttgatttgcttcgtgtttacggtttcagatctaggtttttgtggtgtttctatgtgagaattttttcgattcgtgttgttaaagttttgatgaattgttataggcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatgtatgtatctaattgttgtgtgttttgtgatttatgtgttaaaggccgatatactaacggtgttcatctgcttttcgaatgaagggaggaattcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgtgagtagtttaccctaagtagatccttattttcagcagcatctgttggtttttgtgttttgaccttttgcttaattgatttttgttcactaaattgtaggttggcaaagctggtggagacaagtggaaacagttgtcagatgaagtgagtataagcctcaaatcatatactggaaaattctattcgagtttgacttttgactttatgcgttttgtcttcaaacgaactatgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106033" stop="104633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105733" g_stop="104933" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E546277" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105733" e_stop="104933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACC-TTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAG-TTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTG</genome_strand>
        <mrna_strand>ACCAAAT-CACACAAACGAATAATATCCAACTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCAATACCTCGGCCGAGTTTTCACCTTTTTTCCACCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGCTTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCGTGTTGTTAAAGTTTTGATGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGTATCTAATTGTTGTGTGTTTTGTGA--TTTATGTGTTAAAGGCCGATATACTAACGGTGTTCATCTGCTTTTCGAATGAAGGGAGGAATTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTTGGTTTTTGTGTTTTGACCTTTTGCTTAATTGATTTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTTGACTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298310" ref_strand="+" ref_description="SGN-E298310 [cLET-41-M21]">
      <seq>aacgcaccaaatccactcaaacgaataatatccaattctctctagaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagcttggcgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaagatccaaacaagcctaagaggcctccaagtgccttattcgttttcatggaggagtttaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgttggcaaagctggaggagacaaatggaaacagttgtcagatgaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106038" stop="104722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105738" g_stop="105692" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99">
            <donor d_prob="0.769" d_score="0.98"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105592" g_stop="105547" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="93" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="195" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="253" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105069" g_stop="105025" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="298" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E298310" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105738" e_stop="105692"/>
          <exon e_start="105592" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA</genome_strand>
        <mrna_strand>AACGCACCAAATCCACTCAAACGAATAATATCCAATTCTCTCTAGAG...................................................................................................GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGCGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAAGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTATTCGTTTTCAT......................................................................................GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT....................................................................................................GTTGGCAAAGCTGGAGGAGACAAATGGAAACAGTTGTCAGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216961" ref_strand="-" ref_description="SGN-E216961 [cLEL-1-L17](-)">
      <seq>aggctaaagctgataccaagcttggtgtaaggaagaaggctactgacagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctgcaagtgcctcattcgttttcatggacgagtttaggaagacctacaaggagaagcacccaaacaacaaatctgacgctgttgttggcaaagctggtggagacaagtggaaacagttgtcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="105865" stop="104727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105565" g_stop="105547" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105415" g_stop="105314" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="121" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105227" g_stop="105170" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="179" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105069" g_stop="105027" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="222" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E216961" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216961" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105565" e_stop="105547"/>
          <exon e_start="105415" e_stop="105314"/>
          <exon e_start="105227" e_stop="105170"/>
          <exon e_start="105069" e_stop="105027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATG</genome_strand>
        <mrna_strand>AGGCTAAAGCTGATACCAA...................................................................................................................................GCTTGGTGTAAGGAAGAAGGCTACTGACAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTGCAAGTGCCTCATTCGTTTTCAT......................................................................................GGACGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGACGCTGTT....................................................................................................GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456044" ref_strand="+" ref_description="SGN-E456044 [cSTS-28-I16]">
      <seq>gccaaatccacacaaacgaataatatctctctgtttctactctctctagaggtaaaccctacggcgctttactcactgactcggtcgagtttttacccttttccgccggttcagcaccgattctcaacggttttcgtgttttcgttgcaggtttcatcatgaaaggagctaaatcaaaggctaaagctgaaaccaagtgagtttgactctgttttagttataattttgattcaattcgtgtttacggtttcagatctagatttttgtggtgtttctaagtgagaatttgttcgattcgtgttgttaaaatttgatgaattgttacaggcttggtgtaaggaagaaggctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatgtatttatctaatcgctgtgtgttttatgatttatgcgttttaagtgtttaaggcagatatactgaacggtgttcgtttgttttgatgaatgaagggaggagttcaggaagacctacaaggagaagcacccaaacaacaaatctgttgctgttgtgagtagtttaccctaagtagatcccgatttccagcagcatctgtcggtttttgtgttttgaccttttgcttaattgatttttgttcactgaatcgtaggttggcaaagctggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106032" stop="104753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105702" g_stop="105053" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="699" r_length="659" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E456044" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105702" e_stop="105053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTG-TTT-TG--TGAT---TTTTATGTGTTTAAGGCCGATATACT-AACGGTGTTCATTCCCTTT-TTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGG</genome_strand>
        <mrna_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTGACTCGGTCGAGTTTTTACCCTTTTCCGCCGGTTCAGCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGAAACCAAGTGAGTTTGACTCTGTTTTAGTTATAATTTTGATTCAATTCGTGTTTACGGTTTCAGATCTAGATTTTTGTGGTGTTTCTAAGTGAGAATTTGTTCGATTCGTGTTGTTAAAATTTGATGAATTGTTACAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATTTATCTAATCGCTGTGTGTTTTATGATTTATGCGTTTTAAGTGTTTAAGGCAGATATACTGAACGGTGTTCGTTTGTTTTGATGAATGAAGGGAGGAGTTCAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCCGATTTCCAGCAGCATCTGTCGGTTTTTGTGTTTTGACCTTTTGCTTAATTGATTTTTGTTCACTGAATCGTAGGTTGGCAAAGCTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426094" ref_strand="+" ref_description="SGN-E426094 [STM-46-E3]">
      <seq>gccaaatccacacaaacgaataatatctctctgtttctactctctctagaggtaaaccctacggcgctttactcactgactcggtcgagtttttacccttttccgccggttcagcaccgattctcaacggttttcgtgttttcgttgcaggtttcatcatgaaaggagctaaatcaaaggctaaagctgaaaccaagtgagtttgactctgttttagttataattttgattcaattcgtgtttacggtttcagatctagatttttgtggtgtttctaagtgagaatttgttcgattcgtgttgttaaaatttgatgaattgttacaggcttggtgtaaggaagaaagctactgagagtaagaaagcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgntttcatgtatttatctaatcgctgtgtgttttatgatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106032" stop="104981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105702" g_stop="105279" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="464" r_length="424" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E426094" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105702" e_stop="105279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTT</genome_strand>
        <mrna_strand>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTGACTCGGTCGAGTTTTTACCCTTTTCCGCCGGTTCAGCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGAAACCAAGTGAGTTTGACTCTGTTTTAGTTATAATTTTGATTCAATTCGTGTTTACGGTTTCAGATCTAGATTTTTGTGGTGTTTCTAAGTGAGAATTTGTTCGATTCGTGTTGTTAAAATTTGATGAATTGTTACAGGCTTGGTGTAAGGAAGAAAGCTACTGAGAGTAAGAAAGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGNTTTCATGTATTTATCTAATCGCTGTGTGTTTTATGATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358717" ref_strand="+" ref_description="SGN-E358717 [cLHT-22-P12]">
      <seq>ccaaatcacacaaacgaataatatccaactctctctagaggtaaaccgtacggcgctttactcaatacctcggccgagttttcaccttttttccaccggttcatcaccgattctcaacggttttcgtgttttcgttgcaggtttcatcatgaaaggagctaaatcaaaggctaaagctgataccaagtgagtttgactttgttttagttgtggttttgatttgcttcgtgtttacggtttcagatctaggtttttgtggtgtttctatgtgagaattttttcgattcgtgttgttaaagttttgatgaattgttataggcttggtgtaaggaagaaggctactgagagtaagaaggcgaagaacgctgctaaggatccaaacaagcctaagaggcctccaagtgccttcttcgttttcatgtatgtatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0026H18-MNs3q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0026H18.1" temp_strand="-" temp_description="C02SLe0026H18.1  AC215450.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0026H18 sequenced_by:kribb upload_account_name:korea">
        <position start="106032" stop="105003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105732" g_stop="105303" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0026H18.1" gen_strand="-" ref_id="SGN-E358717" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0026H18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105732" e_stop="105303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACC-TTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAG-TTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTA</genome_strand>
        <mrna_strand>CCAAAT-CACACAAACGAATAATATCCAACTCTCTCTAGAGGTAAACCGTACGGCGCTTTACTCAATACCTCGGCCGAGTTTTCACCTTTTTTCCACCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGCTTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCGTGTTGTTAAAGTTTTGATGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>112</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="22767" PGL_stop="23443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22767" e_stop="23443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22767" e_stop="23443" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22767" stop="23443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22768" stop="23213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAGCTCAATGGGAGTGGACAAGTACATGTGACAGTGAGTAAAAAGAAGGAAAACCATTCCTTCCATTTGCTCCAGACCTGAATAAGAGTCTAAGTTGCACGGACTATTCACTGTTGCTGTTGCACCCGTGTACGAGACGCGTGCGCGTATCGCACGCGTCCGAGGGATACGTGTGGGATTTGGTCAACCCACATTGGATACTTTGACCCCGAGTCCATAGAAAAATTTGTGGGAAAATTGAGATATCAAAAAAGATAAAGACAATAGATTTAAAACATGGTAAATGACTTACATTCAATATTATATTCCTTTTGCCTCCTTTTTAGCTTTTTCCTCTAGGTCAATATTTGTTGCTGCATGTTTTATGCCTAATGGAGAGAAACTAAGAGTTCAAGCAGATGTGTTTGGCTTCTGGTACACAGTAGCAATGATCTGTGCGGAGAGCTGGTGGAATTAAGTCCTTGAATGCCTTCCGTTTTGTTATTTTAGGGGAACAACCAAAGACTTTGAATGAAGAAGTTGGGGTCTTGGGGAAAATGAGTAAGAAGATCTTTCAAAATTTGAAATATCTCTATAGTTCTATTTTATATTTTGGAATTTTTTAGCCAAATTCCAGCACCCTTATCGCTGACATTATTCACATTTTAGGAAATACTCTACTGGCTAACAAGATT</gDNA_template>
            <first_frame> *  K  L  N  G  S  G  Q  V  H  V  T  V  S  K  K  K  E  N  H  S  F  H  L  L  Q  T  *  I  R  V  *  V  A  R  T  I  H  C  C  C  C  T  R  V  R  D  A  C  A  Y  R  T  R  P  R  D  T  C  G  I  W  S  T  H  I  G  Y  F  D  P  E  S  I  E  K  F  V  G  K  L  R  Y  Q  K  R  *  R  Q  *  I  *  N  M  V  N  D  L  H  S  I  L  Y  S  F  C  L  L  F  S  F  F  L  *  V  N  I  C  C  C  M  F  Y  A  *  W  R  E  T  K  S  S  S  R  C  V  W  L  L  V  H  S  S  N  D  L  C  G  E  L  V  E  L  S  P  *  M  P  S  V  L  L  F  *  G  N  N  Q  R  L  *  M  K  K  L  G  S  W  G  K  *  V  R  R  S  F  K  I  *  N  I  S  I  V  L  F  Y  I  L  E  F  F  S  Q  I  P  A  P  L  S  L  T  L  F  T  F  *  E  I  L  Y  W  L  T  R   </first_frame>
            <second_frame>  K  S  S  M  G  V  D  K  Y  M  *  Q  *  V  K  R  R  K  T  I  P  S  I  C  S  R  P  E  *  E  S  K  L  H  G  L  F  T  V  A  V  A  P  V  Y  E  T  R  A  R  I  A  R  V  R  G  I  R  V  G  F  G  Q  P  T  L  D  T  L  T  P  S  P  *  K  N  L  W  E  N  *  D  I  K  K  D  K  D  N  R  F  K  T  W  *  M  T  Y  I  Q  Y  Y  I  P  F  A  S  F  L  A  F  S  S  R  S  I  F  V  A  A  C  F  M  P  N  G  E  K  L  R  V  Q  A  D  V  F  G  F  W  Y  T  V  A  M  I  C  A  E  S  W  W  N  *  V  L  E  C  L  P  F  C  Y  F  R  G  T  T  K  D  F  E  *  R  S  W  G  L  G  E  N  E  *  E  D  L  S  K  F  E  I  S  L  *  F  Y  F  I  F  W  N  F  L  A  K  F  Q  H  P  Y  R  *  H  Y  S  H  F  R  K  Y  S  T  G  *  Q  D  </second_frame>
            <third_frame>   K  A  Q  W  E  W  T  S  T  C  D  S  E  *  K  E  G  K  P  F  L  P  F  A  P  D  L  N  K  S  L  S  C  T  D  Y  S  L  L  L  L  H  P  C  T  R  R  V  R  V  S  H  A  S  E  G  Y  V  W  D  L  V  N  P  H  W  I  L  *  P  R  V  H  R  K  I  C  G  K  I  E  I  S  K  K  I  K  T  I  D  L  K  H  G  K  *  L  T  F  N  I  I  F  L  L  P  P  F  *  L  F  P  L  G  Q  Y  L  L  L  H  V  L  C  L  M  E  R  N  *  E  F  K  Q  M  C  L  A  S  G  T  Q  *  Q  *  S  V  R  R  A  G  G  I  K  S  L  N  A  F  R  F  V  I  L  G  E  Q  P  K  T  L  N  E  E  V  G  V  L  G  K  M  S  K  K  I  F  Q  N  L  K  Y  L  Y  S  S  I  L  Y  F  G  I  F  *  P  N  S  S  T  L  I  A  D  I  I  H  I  L  G  N  T  L  L  A  N  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0026H18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="24387" PGL_stop="25017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24387" e_stop="25017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="24387" e_stop="25017" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24387" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24509" stop="25012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATGGATTGATGCTGGAAATCGGGGTAAAACAGATGAGCTTATAAGGAAGAAGATGAGTAGAAGAAGTCATTGCTCCTCCATTTTACCAAGGAAAAAAGAAGTTCTTTGCCACAAGTGGTCTACAAGAAAGGCAGCAGTAAATAACAACATTTAGACTGTTCACGATGTGACACTCATGCCTGGTGATTTGTCCTTGAGTGCTTTGACCAAGCTTTTGCTGGTCATGCCTGAAATTGGTTACCAATTACTACACCACTGTGCTGACCAAATTCAAAACTGGGGATGGATCTGCAACTTCCGTTCTCAAGTTTCAGGATCATTTACCAATTACAATCTTTGTTTAGATTTTGATCACACAACGAGTCTGTGGAACTCGAAAAATTGCCATTTACCAGAAATTCCATTGCCCTAAATTTTGCAACAATTTATCAAAGTTAAACCTAACTCTGAGCATGAAGTTATAGGTTTTGAAAAAAAAAGAAACTTAAATCTGATTCACCAGAAGTCAACGTCAGTCACACTTCTTGATGTAAAGTTCTCTTATACTTGTCTCTGTCATATTATATATTCAAAATGTGAAAGTACATGTAAATCAATTTGCAGAACAGTCTTCGAAGGGAAAGGTAT</gDNA_template>
            <first_frame> V  N  G  L  M  L  E  I  G  V  K  Q  M  S  L  *  G  R  R  *  V  E  E  V  I  A  P  P  F  Y  Q  G  K  K  K  F  F  A  T  S  G  L  Q  E  R  Q  Q  *  I  T  T  F  R  L  F  T  M  *  H  S  C  L  V  I  C  P  *  V  L  *  P  S  F  C  W  S  C  L  K  L  V  T  N  Y  Y  T  T  V  L  T  K  F  K  T  G  D  G  S  A  T  S  V  L  K  F  Q  D  H  L  P  I  T  I  F  V  *  I  L  I  T  Q  R  V  C  G  T  R  K  I  A  I  Y  Q  K  F  H  C  P  K  F  C  N  N  L  S  K  L  N  L  T  L  S  M  K  L  *  V  L  K  K  K  E  T  *  I  *  F  T  R  S  Q  R  Q  S  H  F  L  M  *  S  S  L  I  L  V  S  V  I  L  Y  I  Q  N  V  K  V  H  V  N  Q  F  A  E  Q  S  S  K  G  K  V  </first_frame>
            <second_frame>  *  M  D  *  C  W  K  S  G  *  N  R  *  A  Y  K  E  E  D  E  *  K  K  S  L  L  L  H  F  T  K  E  K  R  S  S  L  P  Q  V  V  Y  K  K  G  S  S  K  *  Q  H  L  D  C  S  R  C  D  T  H  A  W  *  F  V  L  E  C  F  D  Q  A  F  A  G  H  A  *  N  W  L  P  I  T  T  P  L  C  *  P  N  S  K  L  G  M  D  L  Q  L  P  F  S  S  F  R  I  I  Y  Q  L  Q  S  L  F  R  F  *  S  H  N  E  S  V  E  L  E  K  L  P  F  T  R  N  S  I  A  L  N  F  A  T  I  Y  Q  S  *  T  *  L  *  A  *  S  Y  R  F  *  K  K  K  K  L  K  S  D  S  P  E  V  N  V  S  H  T  S  *  C  K  V  L  L  Y  L  S  L  S  Y  Y  I  F  K  M  *  K  Y  M  *  I  N  L  Q  N  S  L  R  R  E  R  Y </second_frame>
            <third_frame>   K  W  I  D  A  G  N  R  G  K  T  D  E  L  I  R  K  K  M  S  R  R  S  H  C  S  S  I  L  P  R  K  K  E  V  L  C  H  K  W  S  T  R  K  A  A  V  N  N  N  I  *  T  V  H  D  V  T  L  M  P  G  D  L  S  L  S  A  L  T  K  L  L  L  V  M  P  E  I  G  Y  Q  L  L  H  H  C  A  D  Q  I  Q  N  W  G  W  I  C  N  F  R  S  Q  V  S  G  S  F  T  N  Y  N  L  C  L  D  F  D  H  T  T  S  L  W  N  S  K  N  C  H  L  P  E  I  P  L  P  *  I  L  Q  Q  F  I  K  V  K  P  N  S  E  H  E  V  I  G  F  E  K  K  R  N  L  N  L  I  H  Q  K  S  T  S  V  T  L  L  D  V  K  F  S  Y  T  C  L  C  H  I  I  Y  S  K  C  E  S  T  C  K  S  I  C  R  T  V  F  E  G  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24545" stop="24802"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVHDVTLMPGDLSLSALTKLLLVMPEIGYQLLHHCADQIQNWGWICNFRSQVSGSFTNYNLCLDFDHTTSLWNSKNCHLPEIPLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24803" stop="25015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILQQFIKVKPNSEHEVIGFEKKRNLNLIHQKSTSVTLLDVKFSYTCLCHIIYSKCESTCKSICRTVFEGKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="28012" PGL_stop="28829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28012" e_stop="28829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28012" e_stop="28829" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28012" stop="28782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28263" stop="28718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28274" stop="28829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320801" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATATATTACTAGTGTCAAAAAAAGAAGTCAGGTCATATGTTACTACTGTCATTAAGAGAAGCCAGGTCATCATTTGATATGATTTTGACAATCGGAAAGCAGACAGAGGAAGACAAGGGAATCGAGTGAAAATATTGAATATTCATTTCTTTGGCTCTCGTGTACCAGAAATGTTCATAGGAGGATAAAAGCAAAGTATGTTCAGTATATAAATATGGTTATTTTGCCTGGTCTTCCTGTGGGTTAGTTCCAGAAAGGCTTACTTGTATCAAGTGAAACAAAAGACAGCTGAGTGACTTGTATCTGGGGCTATCTGATGCAGCTGATTGTTTAATGTTTGACACTCCTAAATGGAGTCTGGAATTAGATAAATGTGACATAAAAGACTAAGAGCTTGTTTGGATTGACTTAAAAGTTGATCAAACCTACTTTTAATTCCTTTTTCGCTTTTGAGAGAGTTTGGCTAGATAAGCGTGAAATAGAAAAGACTAAAAAGTATGGTTGGATTGACTTTAAAGTTGGTCAAACCTACTTTTAATTCCTTTTAGCTTTTGAGAGTGTTTGGTTAAGTTCAAAATAACTTGAAATAAGTTAAAGATGACTTAAAAAAAGTTTAAAGTAGGTACTCCGCTACTTTTCCTTTTTTAACTTAAAAGTTATTTAAGTTTGACTTTTTTAAAACTACTTTTAGAAAGCTACTTTTTTAAGTCAAGCCAAAAAGTTTAAAGAGTGACACATGCATGCTCACTCTTGACCGTCCCTTTTCCATTTAAGATCCTCTACTGTTTCCATCTGAGATGATGTGCTTCCTTTTA</gDNA_template>
            <first_frame> V  I  Y  Y  *  C  Q  K  K  K  S  G  H  M  L  L  L  S  L  R  E  A  R  S  S  F  D  M  I  L  T  I  G  K  Q  T  E  E  D  K  G  I  E  *  K  Y  *  I  F  I  S  L  A  L  V  Y  Q  K  C  S  *  E  D  K  S  K  V  C  S  V  Y  K  Y  G  Y  F  A  W  S  S  C  G  L  V  P  E  R  L  T  C  I  K  *  N  K  R  Q  L  S  D  L  Y  L  G  L  S  D  A  A  D  C  L  M  F  D  T  P  K  W  S  L  E  L  D  K  C  D  I  K  D  *  E  L  V  W  I  D  L  K  V  D  Q  T  Y  F  *  F  L  F  R  F  *  E  S  L  A  R  *  A  *  N  R  K  D  *  K  V  W  L  D  *  L  *  S  W  S  N  L  L  L  I  P  F  S  F  *  E  C  L  V  K  F  K  I  T  *  N  K  L  K  M  T  *  K  K  F  K  V  G  T  P  L  L  F  L  F  *  L  K  S  Y  L  S  L  T  F  L  K  L  L  L  E  S  Y  F  F  K  S  S  Q  K  V  *  R  V  T  H  A  C  S  L  L  T  V  P  F  P  F  K  I  L  Y  C  F  H  L  R  *  C  A  S  F   </first_frame>
            <second_frame>  S  Y  I  T  S  V  K  K  R  S  Q  V  I  C  Y  Y  C  H  *  E  K  P  G  H  H  L  I  *  F  *  Q  S  E  S  R  Q  R  K  T  R  E  S  S  E  N  I  E  Y  S  F  L  W  L  S  C  T  R  N  V  H  R  R  I  K  A  K  Y  V  Q  Y  I  N  M  V  I  L  P  G  L  P  V  G  *  F  Q  K  G  L  L  V  S  S  E  T  K  D  S  *  V  T  C  I  W  G  Y  L  M  Q  L  I  V  *  C  L  T  L  L  N  G  V  W  N  *  I  N  V  T  *  K  T  K  S  L  F  G  L  T  *  K  L  I  K  P  T  F  N  S  F  F  A  F  E  R  V  W  L  D  K  R  E  I  E  K  T  K  K  Y  G  W  I  D  F  K  V  G  Q  T  Y  F  *  F  L  L  A  F  E  S  V  W  L  S  S  K  *  L  E  I  S  *  R  *  L  K  K  S  L  K  *  V  L  R  Y  F  S  F  F  N  L  K  V  I  *  V  *  L  F  *  N  Y  F  *  K  A  T  F  L  S  Q  A  K  K  F  K  E  *  H  M  H  A  H  S  *  P  S  L  F  H  L  R  S  S  T  V  S  I  *  D  D  V  L  P  F  </second_frame>
            <third_frame>   H  I  L  L  V  S  K  K  E  V  R  S  Y  V  T  T  V  I  K  R  S  Q  V  I  I  *  Y  D  F  D  N  R  K  A  D  R  G  R  Q  G  N  R  V  K  I  L  N  I  H  F  F  G  S  R  V  P  E  M  F  I  G  G  *  K  Q  S  M  F  S  I  *  I  W  L  F  C  L  V  F  L  W  V  S  S  R  K  A  Y  L  Y  Q  V  K  Q  K  T  A  E  *  L  V  S  G  A  I  *  C  S  *  L  F  N  V  *  H  S  *  M  E  S  G  I  R  *  M  *  H  K  R  L  R  A  C  L  D  *  L  K  S  *  S  N  L  L  L  I  P  F  S  L  L  R  E  F  G  *  I  S  V  K  *  K  R  L  K  S  M  V  G  L  T  L  K  L  V  K  P  T  F  N  S  F  *  L  L  R  V  F  G  *  V  Q  N  N  L  K  *  V  K  D  D  L  K  K  V  *  S  R  Y  S  A  T  F  P  F  L  T  *  K  L  F  K  F  D  F  F  K  T  T  F  R  K  L  L  F  *  V  K  P  K  S  L  K  S  D  T  C  M  L  T  L  D  R  P  F  S  I  *  D  P  L  L  F  P  S  E  M  M  C  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0026H18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28925" PGL_stop="29391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28925" e_stop="29391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="28925" e_stop="29391" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28925" stop="29391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTTCCAGGCTTTTTGCTAAGGTTTACCTGGTATATTTCTTCCTACTGCGATTAAATTTTGCATCTCACCCTGGATTGGAATATCTCACCTATGATCCCAACTTCACTGACAAATATGGAGGAAAATATTTATGAAGAAATTCTCGAGGAAGATGAGTATGTTCACTTTTATGCTCAGGAGCTGCTAAGGCCCATTAGGATTATACATTTCATATTCGTTGCATTTATCGTCTAGACCGGAAGTACTGTTGAACTTGTAGATTATTAATCAAATATTTGATTTAAGTTCCTTGAACTAGTAAAATGCTAGAATCTTGCAATCGTAGAATATACATTGATAGAGAAGCCTACCAACTGAAGAAAATGAAAAGTGTGTGGTTGTGAGAAATCTTTTTGAGGTTCAGTTTGCATTCATTGAGAAATTATTTGTTTATGATTTCTGGATTACAAGGAGAAGGAGAAAAA</gDNA_template>
            <first_frame> P  F  P  G  F  L  L  R  F  T  W  Y  I  S  S  Y  C  D  *  I  L  H  L  T  L  D  W  N  I  S  P  M  I  P  T  S  L  T  N  M  E  E  N  I  Y  E  E  I  L  E  E  D  E  Y  V  H  F  Y  A  Q  E  L  L  R  P  I  R  I  I  H  F  I  F  V  A  F  I  V  *  T  G  S  T  V  E  L  V  D  Y  *  S  N  I  *  F  K  F  L  E  L  V  K  C  *  N  L  A  I  V  E  Y  T  L  I  E  K  P  T  N  *  R  K  *  K  V  C  G  C  E  K  S  F  *  G  S  V  C  I  H  *  E  I  I  C  L  *  F  L  D  Y  K  E  K  E  K   </first_frame>
            <second_frame>  H  F  Q  A  F  C  *  G  L  P  G  I  F  L  P  T  A  I  K  F  C  I  S  P  W  I  G  I  S  H  L  *  S  Q  L  H  *  Q  I  W  R  K  I  F  M  K  K  F  S  R  K  M  S  M  F  T  F  M  L  R  S  C  *  G  P  L  G  L  Y  I  S  Y  S  L  H  L  S  S  R  P  E  V  L  L  N  L  *  I  I  N  Q  I  F  D  L  S  S  L  N  *  *  N  A  R  I  L  Q  S  *  N  I  H  *  *  R  S  L  P  T  E  E  N  E  K  C  V  V  V  R  N  L  F  E  V  Q  F  A  F  I  E  K  L  F  V  Y  D  F  W  I  T  R  R  R  R  K  </second_frame>
            <third_frame>   I  S  R  L  F  A  K  V  Y  L  V  Y  F  F  L  L  R  L  N  F  A  S  H  P  G  L  E  Y  L  T  Y  D  P  N  F  T  D  K  Y  G  G  K  Y  L  *  R  N  S  R  G  R  *  V  C  S  L  L  C  S  G  A  A  K  A  H  *  D  Y  T  F  H  I  R  C  I  Y  R  L  D  R  K  Y  C  *  T  C  R  L  L  I  K  Y  L  I  *  V  P  *  T  S  K  M  L  E  S  C  N  R  R  I  Y  I  D  R  E  A  Y  Q  L  K  K  M  K  S  V  W  L  *  E  I  F  L  R  F  S  L  H  S  L  R  N  Y  L  F  M  I  S  G  L  Q  G  E  G  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0026H18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31382" PGL_stop="29775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31382" e_stop="31350"/>
            <exon e_start="30292" e_stop="29775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.646" acc_prob="0.000" e_score="0.606"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.606">
            <gDNA_exon_boundary e_start="31382" e_stop="31350" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.646" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31349" i_stop="30293" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="30292" e_stop="29775" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31382" stop="31350"/>
              <exon start="30292" stop="29775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAACTCATTCTACGGTTTTTTTTTCTAACAA : CTTCTTAACAGTTCACACTTCTATAATAAAAGAATAGCGAGTTTTTCGAGATCTAAAATCCTAGAGTTGGGTACTGATGTGGGTAATATAATGATCAGTACTCACACAATTTTCTCTCTCATTAAAAGCAAAGAGAGAAACAAGTTTCCTTTGAATGATTAAAAACAAAAAGAAAAGCACAAACCACAAAGCTGCACATCCAACGGTATCAGCTGTTCTAACTTCCGACAGCCTCTTCATCAAACAAGATAACTTCAACAGATTCCTCCGTGGCTTGCTTCCAGGAACCTGTGCTCAATATACCAGGATAGGGTTTATAAGAATAGCTGTGGCATGCACAAAGGATCATCAGAGCTATTTAGAGATGTCAATTTTTAACATGATAGGCTGAATTGATATCAGCGACAGACTTGACACAAACATGTTTCATGGAGGCACCATTTGGGAGTGTAAGGTGTTTGAGCATGAAAAATCAATTCTTCAAGTATTAGTTACATGATTAAAAATACACTTAGTCA</gDNA_template>
            <first_frame> A  N  S  F  Y  G  F  F  F  *  Q  :  L  L  N  S  S  H  F  Y  N  K  R  I  A  S  F  S  R  S  K  I  L  E  L  G  T  D  V  G  N  I  M  I  S  T  H  T  I  F  S  L  I  K  S  K  E  R  N  K  F  P  L  N  D  *  K  Q  K  E  K  H  K  P  Q  S  C  T  S  N  G  I  S  C  S  N  F  R  Q  P  L  H  Q  T  R  *  L  Q  Q  I  P  P  W  L  A  S  R  N  L  C  S  I  Y  Q  D  R  V  Y  K  N  S  C  G  M  H  K  G  S  S  E  L  F  R  D  V  N  F  *  H  D  R  L  N  *  Y  Q  R  Q  T  *  H  K  H  V  S  W  R  H  H  L  G  V  *  G  V  *  A  *  K  I  N  S  S  S  I  S  Y  M  I  K  N  T  L  S   </first_frame>
            <second_frame>  L  T  H  S  T  V  F  F  S  N  N :   F  L  T  V  H  T  S  I  I  K  E  *  R  V  F  R  D  L  K  S  *  S  W  V  L  M  W  V  I  *  *  S  V  L  T  Q  F  S  L  S  L  K  A  K  R  E  T  S  F  L  *  M  I  K  N  K  K  K  S  T  N  H  K  A  A  H  P  T  V  S  A  V  L  T  S  D  S  L  F  I  K  Q  D  N  F  N  R  F  L  R  G  L  L  P  G  T  C  A  Q  Y  T  R  I  G  F  I  R  I  A  V  A  C  T  K  D  H  Q  S  Y  L  E  M  S  I  F  N  M  I  G  *  I  D  I  S  D  R  L  D  T  N  M  F  H  G  G  T  I  W  E  C  K  V  F  E  H  E  K  S  I  L  Q  V  L  V  T  *  L  K  I  H  L  V  </second_frame>
            <third_frame>   *  L  I  L  R  F  F  F  L  T   : T  S  *  Q  F  T  L  L  *  *  K  N  S  E  F  F  E  I  *  N  P  R  V  G  Y  *  C  G  *  Y  N  D  Q  Y  S  H  N  F  L  S  H  *  K  Q  R  E  K  Q  V  S  F  E  *  L  K  T  K  R  K  A  Q  T  T  K  L  H  I  Q  R  Y  Q  L  F  *  L  P  T  A  S  S  S  N  K  I  T  S  T  D  S  S  V  A  C  F  Q  E  P  V  L  N  I  P  G  *  G  L  *  E  *  L  W  H  A  Q  R  I  I  R  A  I  *  R  C  Q  F  L  T  *  *  A  E  L  I  S  A  T  D  L  T  Q  T  C  F  M  E  A  P  F  G  S  V  R  C  L  S  M  K  N  Q  F  F  K  Y  *  L  H  D  *  K  Y  T  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30138" stop="29902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKNKKKSTNHKAAHPTVSAVLTSDSLFIKQDNFNRFLRGLLPGTCAQYTRIGFIRIAVACTKDHQSYLEMSIFNMIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29847" PGL_stop="30363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29847" e_stop="30363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29847" e_stop="30363" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29847" stop="30363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316896" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAATGGTGCCTCCATGAAACATGTTTGTGTCAAGTCTGTCGCTGATATCAATTCAGCCTATCATGTTAAAAATTGACATCTCTAAATAGCTCTGATGATCCTTTGTGCATGCCACAGCTATTCTTATAAACCCTATCCTGGTATATTGAGCACAGGTTCCTGGAAGCAAGCCACGGAGGAATCTGTTGAAGTTATCTTGTTTGATGAAGAGGCTGTCGGAAGTTAGAACAGCTGATACCGTTGGATGTGCAGCTTTGTGGTTTGTGCTTTTCTTTTTGTTTTTAATCATTCAAAGGAAACTTGTTTCTCTCTTTGCTTTTAATGAGAGAGAAAATTGTGTGAGTACTGATCATTATATTACCCACATCAGTACCCAACTCTAGGATTTTAGATCTCGAAAAACTCGCTATTCTTTTATTATAGAAGTGTGAACTGTTAAGAAGCTTGTTTTGCCCATTATAACCAAATTTCAGTTTCACCTTGATGCTTCAACGATCAAGTGTGGAATTGAGAG</gDNA_template>
            <first_frame> P  K  W  C  L  H  E  T  C  L  C  Q  V  C  R  *  Y  Q  F  S  L  S  C  *  K  L  T  S  L  N  S  S  D  D  P  L  C  M  P  Q  L  F  L  *  T  L  S  W  Y  I  E  H  R  F  L  E  A  S  H  G  G  I  C  *  S  Y  L  V  *  *  R  G  C  R  K  L  E  Q  L  I  P  L  D  V  Q  L  C  G  L  C  F  S  F  C  F  *  S  F  K  G  N  L  F  L  S  L  L  L  M  R  E  K  I  V  *  V  L  I  I  I  L  P  T  S  V  P  N  S  R  I  L  D  L  E  K  L  A  I  L  L  L  *  K  C  E  L  L  R  S  L  F  C  P  L  *  P  N  F  S  F  T  L  M  L  Q  R  S  S  V  E  L  R  </first_frame>
            <second_frame>  P  N  G  A  S  M  K  H  V  C  V  K  S  V  A  D  I  N  S  A  Y  H  V  K  N  *  H  L  *  I  A  L  M  I  L  C  A  C  H  S  Y  S  Y  K  P  Y  P  G  I  L  S  T  G  S  W  K  Q  A  T  E  E  S  V  E  V  I  L  F  D  E  E  A  V  G  S  *  N  S  *  Y  R  W  M  C  S  F  V  V  C  A  F  L  F  V  F  N  H  S  K  E  T  C  F  S  L  C  F  *  *  E  R  K  L  C  E  Y  *  S  L  Y  Y  P  H  Q  Y  P  T  L  G  F  *  I  S  K  N  S  L  F  F  Y  Y  R  S  V  N  C  *  E  A  C  F  A  H  Y  N  Q  I  S  V  S  P  *  C  F  N  D  Q  V  W  N  *  E </second_frame>
            <third_frame>   Q  M  V  P  P  *  N  M  F  V  S  S  L  S  L  I  S  I  Q  P  I  M  L  K  I  D  I  S  K  *  L  *  *  S  F  V  H  A  T  A  I  L  I  N  P  I  L  V  Y  *  A  Q  V  P  G  S  K  P  R  R  N  L  L  K  L  S  C  L  M  K  R  L  S  E  V  R  T  A  D  T  V  G  C  A  A  L  W  F  V  L  F  F  L  F  L  I  I  Q  R  K  L  V  S  L  F  A  F  N  E  R  E  N  C  V  S  T  D  H  Y  I  T  H  I  S  T  Q  L  *  D  F  R  S  R  K  T  R  Y  S  F  I  I  E  V  *  T  V  K  K  L  V  L  P  I  I  T  K  F  Q  F  H  L  D  A  S  T  I  K  C  G  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29999" stop="30232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQVPGSKPRRNLLKLSCLMKRLSEVRTADTVGCAALWFVLFFLFLIIQRKLVSLFAFNERENCVSTDHYITHISTQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46937" PGL_stop="47769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46937" e_stop="47769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="46937" e_stop="47769" e_length="833"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46937" stop="47769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46938" stop="47650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCAAGAACTTGTTGGTTTTTTAAGATGCGTGTTTTAAGGTATTCTTAGATTATTTTGTAATACATGTTTTAAGCGAAAGTGTGAGGCTATTTGGAGCGCAGTTCGGTCAGGGTCTGATCAATTTTCCGATCAAAAAAATAAGATTTTTGCATGCATTGTTTTCAAGAACTTGCTTTCTGAAGTTACATTGTTATTCTTAGGTGCATATGAAATAAAAGAAACTGTTGTTTTCAAGAATATATTGTGTTGTCAAGGAAATTCAAGAAATCTATTTTTTTTTAGAAGAATTGTGTTGTCATTCTCTATATGTATCGTCTAGACTAATGATTTTGATTGTTTCTTAGAGAATGGGAATTATATGTTCTCTGATTTTGTTATTTGAGATGGCCTTTTTGATCTCATTCGTATTCCAAGTTTGAGTTTCAGCCTGCCTTCCACCGAATATAAAATAGAGGCGAGCTGCTGAGGAAATGGCAAGTCTTGCTGTTATGCAATTTAATCACTTAGACTAGTTGCTCAAACTCTTCAGTGAGTTCTTATGTTCCTTCATTTGTTACTTCTGATATTGAGGGCATATGTTTTATACCAAAATTGATATACATTTTCTCCTCTTAGTATGATGTTCCATTCTAGTATTATAACTTTTTCTTATTCATATGAATATATATGACAACTTATATCTTTTTGCCATGAGATTTGTTTTCCCTATAGGGCTGTTATTTTTATGTTTGTTATTTTTTTTAACTAGTGTACTCCTATTTTGAACCTAACCTAGTTTCCGCCAGGTATCTGTTGCTATAGACATTACGACCTGCTATGTTAAGGTGG</gDNA_template>
            <first_frame> K  N  Q  E  L  V  G  F  L  R  C  V  F  *  G  I  L  R  L  F  C  N  T  C  F  K  R  K  C  E  A  I  W  S  A  V  R  S  G  S  D  Q  F  S  D  Q  K  N  K  I  F  A  C  I  V  F  K  N  L  L  S  E  V  T  L  L  F  L  G  A  Y  E  I  K  E  T  V  V  F  K  N  I  L  C  C  Q  G  N  S  R  N  L  F  F  F  R  R  I  V  L  S  F  S  I  C  I  V  *  T  N  D  F  D  C  F  L  E  N  G  N  Y  M  F  S  D  F  V  I  *  D  G  L  F  D  L  I  R  I  P  S  L  S  F  S  L  P  S  T  E  Y  K  I  E  A  S  C  *  G  N  G  K  S  C  C  Y  A  I  *  S  L  R  L  V  A  Q  T  L  Q  *  V  L  M  F  L  H  L  L  L  L  I  L  R  A  Y  V  L  Y  Q  N  *  Y  T  F  S  P  L  S  M  M  F  H  S  S  I  I  T  F  S  Y  S  Y  E  Y  I  *  Q  L  I  S  F  C  H  E  I  C  F  P  Y  R  A  V  I  F  M  F  V  I  F  F  N  *  C  T  P  I  L  N  L  T  *  F  P  P  G  I  C  C  Y  R  H  Y  D  L  L  C  *  G   </first_frame>
            <second_frame>  K  T  K  N  L  L  V  F  *  D  A  C  F  K  V  F  L  D  Y  F  V  I  H  V  L  S  E  S  V  R  L  F  G  A  Q  F  G  Q  G  L  I  N  F  P  I  K  K  I  R  F  L  H  A  L  F  S  R  T  C  F  L  K  L  H  C  Y  S  *  V  H  M  K  *  K  K  L  L  F  S  R  I  Y  C  V  V  K  E  I  Q  E  I  Y  F  F  L  E  E  L  C  C  H  S  L  Y  V  S  S  R  L  M  I  L  I  V  S  *  R  M  G  I  I  C  S  L  I  L  L  F  E  M  A  F  L  I  S  F  V  F  Q  V  *  V  S  A  C  L  P  P  N  I  K  *  R  R  A  A  E  E  M  A  S  L  A  V  M  Q  F  N  H  L  D  *  L  L  K  L  F  S  E  F  L  C  S  F  I  C  Y  F  *  Y  *  G  H  M  F  Y  T  K  I  D  I  H  F  L  L  L  V  *  C  S  I  L  V  L  *  L  F  L  I  H  M  N  I  Y  D  N  L  Y  L  F  A  M  R  F  V  F  P  I  G  L  L  F  L  C  L  L  F  F  L  T  S  V  L  L  F  *  T  *  P  S  F  R  Q  V  S  V  A  I  D  I  T  T  C  Y  V  K  V  </second_frame>
            <third_frame>   K  P  R  T  C  W  F  F  K  M  R  V  L  R  Y  S  *  I  I  L  *  Y  M  F  *  A  K  V  *  G  Y  L  E  R  S  S  V  R  V  *  S  I  F  R  S  K  K  *  D  F  C  M  H  C  F  Q  E  L  A  F  *  S  Y  I  V  I  L  R  C  I  *  N  K  R  N  C  C  F  Q  E  Y  I  V  L  S  R  K  F  K  K  S  I  F  F  *  K  N  C  V  V  I  L  Y  M  Y  R  L  D  *  *  F  *  L  F  L  R  E  W  E  L  Y  V  L  *  F  C  Y  L  R  W  P  F  *  S  H  S  Y  S  K  F  E  F  Q  P  A  F  H  R  I  *  N  R  G  E  L  L  R  K  W  Q  V  L  L  L  C  N  L  I  T  *  T  S  C  S  N  S  S  V  S  S  Y  V  P  S  F  V  T  S  D  I  E  G  I  C  F  I  P  K  L  I  Y  I  F  S  S  *  Y  D  V  P  F  *  Y  Y  N  F  F  L  F  I  *  I  Y  M  T  T  Y  I  F  L  P  *  D  L  F  S  L  *  G  C  Y  F  Y  V  C  Y  F  F  *  L  V  Y  S  Y  F  E  P  N  L  V  S  A  R  Y  L  L  L  *  T  L  R  P  A  M  L  R  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46979" stop="47260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILRLFCNTCFKRKCEAIWSAVRSGSDQFSDQKNKIFACIVFKNLLSEVTLLFLGAYEIKETVVFKNILCCQGNSRNLFFFRRIVLSFSICIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54125" PGL_stop="54759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54125" e_stop="54150"/>
            <exon e_start="54230" e_stop="54389"/>
            <exon e_start="54478" e_stop="54493"/>
            <exon e_start="54608" e_stop="54759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.936" e_score="0.962"/>
          <exon-intron don_prob="0.918" acc_prob="0.674" e_score="0.975"/>
          <exon-intron don_prob="0.000" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="54125" e_stop="54150" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.936">
            <gDNA_intron_boundary i_start="54151" i_stop="54229" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="54230" e_stop="54389" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.918" acc_prob="0.674">
            <gDNA_intron_boundary i_start="54390" i_stop="54477" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54478" e_stop="54493" e_length="16"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.833">
            <gDNA_intron_boundary i_start="54494" i_stop="54607" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54608" e_stop="54759" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54125" stop="54150"/>
              <exon start="54230" stop="54389"/>
              <exon start="54478" stop="54493"/>
              <exon start="54608" stop="54759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTTAAAATTGTTGATATTGAAAG : TGAGGATGACCTGCTTTGCACTCGTGCTTCTCCTTCTCCATTGCCGCTATTGTCCAGTGAGTTTGGAATTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATTCAAGCTCTCAGGATACATTTCAGATCCTGATGTTTACACAGTGAAG : GTCCTTCAATATTTCT : ATATCAATTCAAGATTTGTTTCCAAAGGACCAATACATAAATTACTTAATAACACAGCTATGAGTTTTGACAGAGCTTCTGACATTGAGAAGCGAAGTAGATCTCAGATATATCCTCTGTTTATGCTGAACCTAAACTGTCCAAGATCTTTT</gDNA_template>
            <first_frame> S  F  K  I  V  D  I  E  S :   E  D  D  L  L  C  T  R  A  S  P  S  P  L  P  L  L  S  S  E  F  G  I  H  L  S  S  L  N  K  L  N  A  S  D  G  S  F  K  L  S  G  Y  I  S  D  P  D  V  Y  T  V  K  :  V  L  Q  Y  F   : Y  I  N  S  R  F  V  S  K  G  P  I  H  K  L  L  N  N  T  A  M  S  F  D  R  A  S  D  I  E  K  R  S  R  S  Q  I  Y  P  L  F  M  L  N  L  N  C  P  R  S  F </first_frame>
            <second_frame>  P  L  K  L  L  I  L  K   : V  R  M  T  C  F  A  L  V  L  L  L  L  H  C  R  Y  C  P  V  S  L  E  F  I  *  V  P  L  T  N  *  M  Q  V  M  V  H  S  S  S  Q  D  T  F  Q  I  L  M  F  T  Q  *  R :   S  F  N  I  S  :  I  S  I  Q  D  L  F  P  K  D  Q  Y  I  N  Y  L  I  T  Q  L  *  V  L  T  E  L  L  T  L  R  S  E  V  D  L  R  Y  I  L  C  L  C  *  T  *  T  V  Q  D  L   </second_frame>
            <third_frame>   L  *  N  C  *  Y  *  K  :  *  G  *  P  A  L  H  S  C  F  S  F  S  I  A  A  I  V  Q  *  V  W  N  S  S  E  F  P  *  Q  I  E  C  K  *  W  F  I  Q  A  L  R  I  H  F  R  S  *  C  L  H  S  E   : G  P  S  I  F  L :   Y  Q  F  K  I  C  F  Q  R  T  N  T  *  I  T  *  *  H  S  Y  E  F  *  Q  S  F  *  H  *  E  A  K  *  I  S  D  I  S  S  V  Y  A  E  P  K  L  S  K  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54125" stop="54150"/>
                    <exon start="54230" stop="54389"/>
                    <exon start="54478" stop="54493"/>
                    <exon start="54608" stop="54759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFKIVDIESEDDLLCTRASPSPLPLLSSEFGIHLSSLNKLNASDGSFKLSGYISDPDVYTVKVLQYFYINSRFVSKGPIHKLLNNTAMSFDRASDIEKRSRSQIYPLFMLNLNCPRSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="58810" PGL_stop="63122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58810" e_stop="59106"/>
            <exon e_start="59196" e_stop="59325"/>
            <exon e_start="59424" e_stop="59518"/>
            <exon e_start="59926" e_stop="60002"/>
            <exon e_start="60094" e_stop="60291"/>
            <exon e_start="60997" e_stop="61041"/>
            <exon e_start="61111" e_stop="61164"/>
            <exon e_start="61293" e_stop="61399"/>
            <exon e_start="61556" e_stop="61604"/>
            <exon e_start="62501" e_stop="62654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.884" e_score="0.997"/>
          <exon-intron don_prob="0.929" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.640" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.192" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.022" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.918"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="58810" e_stop="59106" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.884">
            <gDNA_intron_boundary i_start="59107" i_stop="59195" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59196" e_stop="59325" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.856">
            <gDNA_intron_boundary i_start="59326" i_stop="59423" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59424" e_stop="59518" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.640" acc_prob="0.972">
            <gDNA_intron_boundary i_start="59519" i_stop="59925" i_length="407"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59926" e_stop="60002" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.192" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60003" i_stop="60093" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60094" e_stop="60291" e_length="198"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60292" i_stop="60996" i_length="705"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60997" e_stop="61041" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.912" acc_prob="0.022">
            <gDNA_intron_boundary i_start="61042" i_stop="61110" i_length="69"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61111" e_stop="61164" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.995">
            <gDNA_intron_boundary i_start="61165" i_stop="61292" i_length="128"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="61293" e_stop="61399" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61400" i_stop="61555" i_length="156"/>
          </intron>
          <exon e_serial="9" e_score="0.918">
            <gDNA_exon_boundary e_start="61556" e_stop="61604" e_length="49"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="61605" i_stop="62500" i_length="896"/>
          </intron>
          <exon e_serial="10" e_score="0.948">
            <gDNA_exon_boundary e_start="62501" e_stop="62654" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58810" stop="59106"/>
              <exon start="59196" stop="59325"/>
              <exon start="59424" stop="59490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59221" stop="59325"/>
              <exon start="59424" stop="59518"/>
              <exon start="59926" stop="60002"/>
              <exon start="60094" stop="60291"/>
              <exon start="60997" stop="61041"/>
              <exon start="61111" stop="61164"/>
              <exon start="61293" stop="61395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59474" stop="59518"/>
              <exon start="59926" stop="60002"/>
              <exon start="60094" stop="60291"/>
              <exon start="60997" stop="61041"/>
              <exon start="61111" stop="61164"/>
              <exon start="61293" stop="61399"/>
              <exon start="61556" stop="61604"/>
              <exon start="62501" stop="62654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAATCCTATTATGATGGAGATGATTTGTCACATACACATTCTCATGGTGAAAATCTTACTAATTGTTTGACACCACGAGCTATGCTCTCCTCTTGGGTGGATGGGAATTCGCATAAATGGAATGATGCTGGGAGTCGAGGTAACACAGATAAGCTTATAAGGAAGAAGAGTAGAAGTCATTCAGCTCCTCCATTTTATCAAGGCAAGAAGAAGTTTTTTGCCACGAGCGAGTCTTCAAAAACGGCAGCAGGAAATAACATTATTAAGACTGTTCATGATGTGCCACTCATGCCAG : AAACTAGAGCAGTAAGAAGACTGGGGGATTCTACAGAAGCTATCTGCTCGGAGCTTCCACAGCAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGTGGTGATGGTGTTTATTCTGATGAAAG : GCTAAGTGTTAAAATGAAACTTGTTGACATCTGGAATAGCAAATTACAAACTCAAGGAGAGTGCATAAGTACACGCTATGGGGAGTTAAAAGAAG : AATTTGCACCAACAAAAGAAACTCAAAGTATCTTAGATTCTGGGACAAAATGGAGGGACTTCTGTCCAGAGATTACA : AGCGGCGCTGGAACAAAGAGTCGTAAGAATCAGGATACTGTACTCAATGTCACTTCTGGCATATTGCATTTTCTTGGTGATTCATTGGTTCCTAATACCATTGATAGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAG : CATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAG : GTTCTATCTGGACAAAAAAGAACAACAACCTATCTTGATTCCGAGCAAGAATTG : GTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTACCAG : GAACTTGAATCTGATTCACAAGCAGCAAACATCTGTCAGGCTTCTTGCG : CTTGCTGACACAGATGGATCATCAATAGTACCTCCATCAGTGAATCGTATCCTGAATAACAAGGCTTGCAGGAGTAAGTTAATATTTAATTTATGAATTTGGAGCTACCTTGAAGGCTCTCTCACCTCCACCCACCCCCACGTAAGAAAAAGAG</gDNA_template>
            <first_frame> L  N  P  I  M  M  E  M  I  C  H  I  H  I  L  M  V  K  I  L  L  I  V  *  H  H  E  L  C  S  P  L  G  W  M  G  I  R  I  N  G  M  M  L  G  V  E  V  T  Q  I  S  L  *  G  R  R  V  E  V  I  Q  L  L  H  F  I  K  A  R  R  S  F  L  P  R  A  S  L  Q  K  R  Q  Q  E  I  T  L  L  R  L  F  M  M  C  H  S  C  Q  :  K  L  E  Q  *  E  D  W  G  I  L  Q  K  L  S  A  R  S  F  H  S  S  H  P  I  N  V  I  N  L  P  P  Q  V  V  V  M  V  F  I  L  M  K   : G  *  V  L  K  *  N  L  L  T  S  G  I  A  N  Y  K  L  K  E  S  A  *  V  H  A  M  G  S  *  K  K  :  N  L  H  Q  Q  K  K  L  K  V  S  *  I  L  G  Q  N  G  G  T  S  V  Q  R  L  Q :   A  A  L  E  Q  R  V  V  R  I  R  I  L  Y  S  M  S  L  L  A  Y  C  I  F  L  V  I  H  W  F  L  I  P  L  I  E  T  A  W  V  V  P  K  Y  S  N  R  L  I  R  S  L  F  R  L  W  A  A  Q  H  L  L  *  L  I  S :   M  L  Q  T  S  E  F  V  W  K  N  C  V  R  R :   F  Y  L  D  K  K  E  Q  Q  P  I  L  I  P  S  K  N  W :   S  C  L  K  L  V  I  N  Y  Y  T  T  M  L  T  K  F  K  T  G  V  G  S  A  T  F  I  L  K  L  Q  N  H  L  P   : G  T  *  I  *  F  T  S  S  K  H  L  S  G  F  L  R :   L  L  T  Q  M  D  H  Q  *  Y  L  H  Q  *  I  V  S  *  I  T  R  L  A  G  V  S  *  Y  L  I  Y  E  F  G  A  T  L  K  A  L  S  P  P  P  T  P  T  *  E  K  E </first_frame>
            <second_frame>  *  I  L  L  *  W  R  *  F  V  T  Y  T  F  S  W  *  K  S  Y  *  L  F  D  T  T  S  Y  A  L  L  L  G  G  W  E  F  A  *  M  E  *  C  W  E  S  R  *  H  R  *  A  Y  K  E  E  E  *  K  S  F  S  S  S  I  L  S  R  Q  E  E  V  F  C  H  E  R  V  F  K  N  G  S  R  K  *  H  Y  *  D  C  S  *  C  A  T  H  A  R :   N  *  S  S  K  K  T  G  G  F  Y  R  S  Y  L  L  G  A  S  T  A  V  I  P  S  M  *  S  I  F  H  P  K  L  W  *  W  C  L  F  *  *  K  :  A  K  C  *  N  E  T  C  *  H  L  E  *  Q  I  T  N  S  R  R  V  H  K  Y  T  L  W  G  V  K  R  R :   I  C  T  N  K  R  N  S  K  Y  L  R  F  W  D  K  M  E  G  L  L  S  R  D  Y   : K  R  R  W  N  K  E  S  *  E  S  G  Y  C  T  Q  C  H  F  W  H  I  A  F  S  W  *  F  I  G  S  *  Y  H  *  *  K  L  P  G  W  C  Q  S  T  P  T  G  *  *  E  V  Y  S  D  C  G  R  H  N  T  C  Y  N  *  S   : A  C  C  R  R  A  N  S  F  G  R  T  A  *  E   : G  S  I  W  T  K  K  N  N  N  L  S  *  F  R  A  R  I   : G  H  A  *  N  W  L  S  I  I  T  Q  L  C  *  P  N  S  K  L  G  L  D  L  Q  H  S  F  S  S  F  K  I  I  Y  Q  :  E  L  E  S  D  S  Q  A  A  N  I  C  Q  A  S  C   : A  C  *  H  R  W  I  I  N  S  T  S  I  S  E  S  Y  P  E  *  Q  G  L  Q  E  *  V  N  I  *  F  M  N  L  E  L  P  *  R  L  S  H  L  H  P  P  P  R  K  K  K   </second_frame>
            <third_frame>   E  S  Y  Y  D  G  D  D  L  S  H  T  H  S  H  G  E  N  L  T  N  C  L  T  P  R  A  M  L  S  S  W  V  D  G  N  S  H  K  W  N  D  A  G  S  R  G  N  T  D  K  L  I  R  K  K  S  R  S  H  S  A  P  P  F  Y  Q  G  K  K  K  F  F  A  T  S  E  S  S  K  T  A  A  G  N  N  I  I  K  T  V  H  D  V  P  L  M  P   : E  T  R  A  V  R  R  L  G  D  S  T  E  A  I  C  S  E  L  P  Q  Q  S  S  H  Q  C  D  Q  S  S  T  P  S  C  G  D  G  V  Y  S  D  E  R :   L  S  V  K  M  K  L  V  D  I  W  N  S  K  L  Q  T  Q  G  E  C  I  S  T  R  Y  G  E  L  K  E   : E  F  A  P  T  K  E  T  Q  S  I  L  D  S  G  T  K  W  R  D  F  C  P  E  I  T  :  S  G  A  G  T  K  S  R  K  N  Q  D  T  V  L  N  V  T  S  G  I  L  H  F  L  G  D  S  L  V  P  N  T  I  D  R  N  C  L  G  G  A  K  V  L  Q  Q  V  D  K  K  F  I  P  I  V  G  G  T  T  L  A  I  I  D  Q  :  H  A  A  D  E  R  I  R  L  E  E  L  R  E  K  :  V  L  S  G  Q  K  R  T  T  T  Y  L  D  S  E  Q  E  L  :  V  M  P  E  I  G  Y  Q  L  L  H  N  Y  A  D  Q  I  Q  N  W  G  W  I  C  N  I  H  S  Q  A  S  K  S  F  T  R :   N  L  N  L  I  H  K  Q  Q  T  S  V  R  L  L  A  :  L  A  D  T  D  G  S  S  I  V  P  P  S  V  N  R  I  L  N  N  K  A  C  R  S  K  L  I  F  N  L  *  I  W  S  Y  L  E  G  S  L  T  S  T  H  P  H  V  R  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58812" stop="59106"/>
                    <exon start="59196" stop="59325"/>
                    <exon start="59424" stop="59518"/>
                    <exon start="59926" stop="60002"/>
                    <exon start="60094" stop="60291"/>
                    <exon start="60997" stop="61041"/>
                    <exon start="61111" stop="61164"/>
                    <exon start="61293" stop="61399"/>
                    <exon start="61556" stop="61604"/>
                    <exon start="62501" stop="62596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESYYDGDDLSHTHSHGENLTNCLTPRAMLSSWVDGNSHKWNDAGSRGNTDKLIRKKSRSHSAPPFYQGKKKFFATSESSKTAAGNNIIKTVHDVPLMPETRAVRRLGDSTEAICSELPQQSSHQCDQSSTPSCGDGVYSDERLSVKMKLVDIWNSKLQTQGECISTRYGELKEEFAPTKETQSILDSGTKWRDFCPEITSGAGTKSRKNQDTVLNVTSGILHFLGDSLVPNTIDRNCLGGAKVLQQVDKKFIPIVGGTTLAIIDQHAADERIRLEELREKVLSGQKRTTTYLDSEQELVMPEIGYQLLHNYADQIQNWGWICNIHSQASKSFTRNLNLIHKQQTSVRLLALADTDGSSIVPPSVNRILNNKACRSKLIFNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60199" e_stop="60291"/>
            <exon e_start="60997" e_stop="61041"/>
            <exon e_start="61131" e_stop="61164"/>
            <exon e_start="61293" e_stop="61399"/>
            <exon e_start="61556" e_stop="61604"/>
            <exon e_start="62300" e_stop="62359"/>
            <exon e_start="62501" e_stop="62573"/>
            <exon e_start="62856" e_stop="62941"/>
            <exon e_start="63054" e_stop="63122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.327" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60199" e_stop="60291" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60292" i_stop="60996" i_length="705"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60997" e_stop="61041" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61042" i_stop="61130" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61131" e_stop="61164" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.663" acc_prob="0.995">
            <gDNA_intron_boundary i_start="61165" i_stop="61292" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61293" e_stop="61399" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61400" i_stop="61555" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61556" e_stop="61604" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="61605" i_stop="62299" i_length="695"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62300" e_stop="62359" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="62360" i_stop="62500" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62501" e_stop="62573" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.942" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62574" i_stop="62855" i_length="282"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62856" e_stop="62941" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.327" acc_prob="0.974">
            <gDNA_intron_boundary i_start="62942" i_stop="63053" i_length="112"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63122" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60199" stop="60291"/>
              <exon start="60997" stop="61041"/>
              <exon start="61131" stop="61164"/>
              <exon start="61293" stop="61399"/>
              <exon start="61556" stop="61604"/>
              <exon start="62300" stop="62359"/>
              <exon start="62501" stop="62573"/>
              <exon start="62856" stop="62941"/>
              <exon start="63054" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACTGCCTGGGTGGTGCCAAAGTACTCCAACAGGTTGATAAGAAGTTTATTCCGATTGTGGGCGGCACAACACTTGCTATAATTGATCAG : CATGCTGCAGACGAGCGAATTCGTTTGGAAGAACTGCGTGAGAAG : AACAACAACCTATCTTGATTCCGAGCAAGAATTG : GTCATGCCTGAAATTGGTTATCAATTATTACACAACTATGCTGACCAAATTCAAAACTGGGGTTGGATCTGCAACATTCATTCTCAAGCTTCAAAATCATTTACCAG : GAACTTGAATCTGATTCACAAGCAGCAAACATCTGTCAGGCTTCTTGCG : GTTCCCTGTATTCTGGGTGTTAATCTAACAGATGTGGATCTGTTAGAATTTCTTCAACAG : CTTGCTGACACAGATGGATCATCAATAGTACCTCCATCAGTGAATCGTATCCTGAATAACAAGGCTTGCAGGA : GCGCAATTATGTTTGGAGATGCATTGTTGCCTTCAGAGTGTTCTCTCATTGTTGAGGAGTTGAAGCAGACTTCATTGTGTTTTCAA : TGTGCTCATGGGCGGCCAACTACTGTACCTCTTGTCAACTTGGGCTCTCTGCATGAGCAGATTGCTAAG</gDNA_template>
            <first_frame> R  N  C  L  G  G  A  K  V  L  Q  Q  V  D  K  K  F  I  P  I  V  G  G  T  T  L  A  I  I  D  Q  :  H  A  A  D  E  R  I  R  L  E  E  L  R  E  K  :  N  N  N  L  S  *  F  R  A  R  I   : G  H  A  *  N  W  L  S  I  I  T  Q  L  C  *  P  N  S  K  L  G  L  D  L  Q  H  S  F  S  S  F  K  I  I  Y  Q  :  E  L  E  S  D  S  Q  A  A  N  I  C  Q  A  S  C   : G  S  L  Y  S  G  C  *  S  N  R  C  G  S  V  R  I  S  S  T   : A  C  *  H  R  W  I  I  N  S  T  S  I  S  E  S  Y  P  E  *  Q  G  L  Q  E :   R  N  Y  V  W  R  C  I  V  A  F  R  V  F  S  H  C  *  G  V  E  A  D  F  I  V  F  S   : M  C  S  W  A  A  N  Y  C  T  S  C  Q  L  G  L  S  A  *  A  D  C  *  </first_frame>
            <second_frame>  E  T  A  W  V  V  P  K  Y  S  N  R  L  I  R  S  L  F  R  L  W  A  A  Q  H  L  L  *  L  I  S :   M  L  Q  T  S  E  F  V  W  K  N  C  V  R  R :   T  T  T  Y  L  D  S  E  Q  E  L  :  V  M  P  E  I  G  Y  Q  L  L  H  N  Y  A  D  Q  I  Q  N  W  G  W  I  C  N  I  H  S  Q  A  S  K  S  F  T  R :   N  L  N  L  I  H  K  Q  Q  T  S  V  R  L  L  A  :  V  P  C  I  L  G  V  N  L  T  D  V  D  L  L  E  F  L  Q  Q  :  L  A  D  T  D  G  S  S  I  V  P  P  S  V  N  R  I  L  N  N  K  A  C  R   : S  A  I  M  F  G  D  A  L  L  P  S  E  C  S  L  I  V  E  E  L  K  Q  T  S  L  C  F  Q  :  C  A  H  G  R  P  T  T  V  P  L  V  N  L  G  S  L  H  E  Q  I  A  K </second_frame>
            <third_frame>   K  L  P  G  W  C  Q  S  T  P  T  G  *  *  E  V  Y  S  D  C  G  R  H  N  T  C  Y  N  *  S   : A  C  C  R  R  A  N  S  F  G  R  T  A  *  E   : E  Q  Q  P  I  L  I  P  S  K  N  W :   S  C  L  K  L  V  I  N  Y  Y  T  T  M  L  T  K  F  K  T  G  V  G  S  A  T  F  I  L  K  L  Q  N  H  L  P   : G  T  *  I  *  F  T  S  S  K  H  L  S  G  F  L  R :   F  P  V  F  W  V  L  I  *  Q  M  W  I  C  *  N  F  F  N  S :   L  L  T  Q  M  D  H  Q  *  Y  L  H  Q  *  I  V  S  *  I  T  R  L  A  G  :  A  Q  L  C  L  E  M  H  C  C  L  Q  S  V  L  S  L  L  R  S  *  S  R  L  H  C  V  F  N :   V  L  M  G  G  Q  L  L  Y  L  L  S  T  W  A  L  C  M  S  R  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60284" stop="60291"/>
                    <exon start="60997" stop="61041"/>
                    <exon start="61131" stop="61164"/>
                    <exon start="61293" stop="61399"/>
                    <exon start="61556" stop="61604"/>
                    <exon start="62300" stop="62359"/>
                    <exon start="62501" stop="62573"/>
                    <exon start="62856" stop="62941"/>
                    <exon start="63054" stop="63122"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LISMLQTSEFVWKNCVRRTTTYLDSEQELVMPEIGYQLLHNYADQIQNWGWICNIHSQASKSFTRNLNLIHKQQTSVRLLAVPCILGVNLTDVDLLEFLQQLADTDGSSIVPPSVNRILNNKACRSAIMFGDALLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVNLGSLHEQIAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="67312" PGL_stop="64236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67312" e_stop="66962"/>
            <exon e_start="65915" e_stop="65391"/>
            <exon e_start="64779" e_stop="64592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67312" e_stop="66962" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.899">
            <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65915" e_stop="65391" e_length="525"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.976">
            <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="64779" e_stop="64592" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67312" stop="66962"/>
              <exon start="65915" stop="65499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67307" stop="66962"/>
              <exon start="65915" stop="65717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67307" stop="67007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67274" stop="66962"/>
              <exon start="65915" stop="65395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67260" stop="66962"/>
              <exon start="65915" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="66962"/>
              <exon start="65915" stop="65392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67229" stop="66962"/>
              <exon start="65915" stop="65633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67176" stop="66962"/>
              <exon start="65915" stop="65391"/>
              <exon start="64779" stop="64592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67158" stop="66962"/>
              <exon start="65915" stop="65391"/>
              <exon start="64779" stop="64700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67158" stop="66962"/>
              <exon start="65915" stop="65554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67146" stop="66962"/>
              <exon start="65915" stop="65556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65855" stop="65391"/>
              <exon start="64779" stop="64702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65777" stop="65435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGTTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG : GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA : GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAGTTTTTGATCCTACTGTGCGTTAGCCACTGATTGA</gDNA_template>
            <first_frame> S  S  F  L  L  F  S  P  A  F  A  L  L  S  G  Y  P  F  F  T  H  S  L  C  L  L  Q  R  Y  N  F  V  M  T  L  L  R  N  *  L  K  Q  R  G  K  L  W  I  G  K  N  S  S  S  S  H  R  C  R  R  R  S  R  R  R  R  N  *  T  E  Q  S  V  V  G  C  L  *  K  *  *  R  M  S  K  W  K  F  *  G  S  K  S  L  F  M  L  L  F  V  N  S  L  L  I  C  I  N  P  W  L  H  N  T  I  L  L  :  E  P  G  W  E  I  C  T  A  I  H  W  *  H  L  L  V  I  K  S  L  V  D  N  A  G  L  Q  H  L  C  N  F  R  F  L  S  A  Y  L  N  K  A  M  E  L  Q  P  N  R  R  S  K  R  *  L  L  N  Y  L  N  M  A  K  F  L  K  Q  M  C  I  I  G  F  K  I  G  V  L  D  Q  K  G  S  N  R  L  Q  Q  Q  T  T  L  N  Q  R  W  R  Q  R  L  S  R  P  M  K  R  K  Q  S  Q  R  I  C  S  L  L  T  C  L  L  Q  W  L  K  I  L  A  M  R  T  L  T  *  A  L  E  C  I  H  *  I  H  E  P  V  N  P  S  L  C  F  H  Q  T  V  V  Q  N  L  L  Q  V  M  A  K  C  P  S  M  E  C  L  I  Q  :  E  W  T  S  *  W  E  R  W  K  C  L  G  A  I  I  H  I  Y  M  Q  T  T  T  T  *  P  A  N  Y  Q  F  G  N  *  V  S  A  N  *  N  E  T  R  S  P  K  T  L  A  G  V  F  D  P  T  V  R  *  P  L  I   </first_frame>
            <second_frame>  V  V  F  F  S  S  L  P  L  L  L  Y  F  L  V  T  L  F  L  L  T  L  S  V  Y  F  K  D  T  I  L  *  *  P  F  *  G  I  D  *  N  K  E  E  N  Y  G  L  G  K  T  A  A  A  A  T  G  V  G  A  A  A  D  G  G  G  I  E  R  N  S  Q  W  W  D  V  C  E  S  D  D  G  *  A  N  G  S  F  K  E  A  N  R  C  L  C  Y  Y  L  *  T  A  C  *  F  A  *  I  H  G  F  T  T  R  S  C  W :   S  Q  A  G  K  S  V  L  R  S  T  G  D  I  C  W  S  *  N  H  W  *  T  T  L  D  S  N  T  Y  A  T  S  D  S  *  A  H  I  *  T  R  Q  W  N  S  N  Q  T  E  D  Q  R  D  N  F  *  I  I  S  T  W  P  N  F  *  N  K  C  V  *  L  V  S  K  *  A  C  S  I  K  K  E  A  T  G  C  S  N  K  Q  H  *  I  R  G  G  D  R  G  *  V  A  Q  *  K  E  N  K  A  R  G  S  A  V  F  S  H  A  Y  F  N  G  *  R  S  W  L  *  E  P  *  R  E  L  W  N  A  F  T  R  S  T  N  Q  *  T  R  A  Y  V  S  I  R  R  *  F  K  T  C  C  K  L  W  P  N  V  L  L  W  N  V  *  S  K :   N  G  P  A  N  G  K  D  G  S  A  W  E  L  S  S  I  Y  T  C  R  R  L  Q  H  D  R  L  T  T  N  L  E  T  K  F  Q  Q  I  R  M  R  L  E  A  P  K  L  *  P  E  F  L  I  L  L  C  V  S  H  *  L  </second_frame>
            <third_frame>   *  F  S  S  L  L  S  R  F  C  F  T  F  W  L  P  F  F  Y  S  L  S  L  F  T  S  K  I  Q  F  C  D  D  P  F  K  E  L  T  K  T  K  R  K  I  M  D  W  E  K  Q  Q  Q  Q  P  P  V  S  A  P  Q  Q  T  A  E  E  L  N  G  T  V  S  G  G  M  F  V  K  V  M  T  D  E  Q  M  E  V  L  R  K  Q  I  A  V  Y  A  T  I  C  E  Q  L  V  D  L  H  K  S  M  A  S  Q  H  D  L  A   : G  A  R  L  G  N  L  Y  C  D  P  L  V  T  S  A  G  H  K  I  T  G  R  Q  R  W  T  P  T  P  M  Q  L  Q  I  L  E  R  I  F  E  Q  G  N  G  T  P  T  K  Q  K  I  K  E  I  T  S  E  L  S  Q  H  G  Q  I  S  E  T  N  V  Y  N  W  F  Q  N  R  R  A  R  S  K  R  K  Q  Q  V  A  A  T  N  N  T  E  S  E  V  E  T  E  V  E  S  P  N  E  K  K  T  K  P  E  D  L  Q  S  S  H  M  P  T  S  M  A  E  D  L  G  Y  E  N  P  D  V  S  S  G  M  H  S  L  D  P  R  T  S  K  P  E  P  M  F  P  S  D  G  S  S  K  P  A  A  S  Y  G  Q  M  S  F  Y  G  M  S  N  P   : R  M  D  Q  L  M  G  K  M  E  V  P  G  S  Y  H  P  Y  I  H  A  D  D  Y  N  M  T  G  *  L  P  I  W  K  L  S  F  S  K  L  E  *  D  *  K  P  Q  N  S  S  R  S  F  *  S  Y  C  A  L  A  T  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67307" stop="66962"/>
                    <exon start="65915" stop="65391"/>
                    <exon start="64779" stop="64694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLLSRFCFTFWLPFFYSLSLFTSKIQFCDDPFKELTKTKRKIMDWEKQQQQPPVSAPQQTAEELNGTVSGGMFVKVMTDEQMEVLRKQIAVYATICEQLVDLHKSMASQHDLAGARLGNLYCDPLVTSAGHKITGRQRWTPTPMQLQILERIFEQGNGTPTKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQVAATNNTESEVETEVESPNEKKTKPEDLQSSHMPTSMAEDLGYENPDVSSGMHSLDPRTSKPEPMFPSDGSSKPAASYGQMSFYGMSNPRMDQLMGKMEVPGSYHPYIHADDYNMTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67312" e_stop="66962"/>
            <exon e_start="65915" e_stop="65391"/>
            <exon e_start="64779" e_stop="64612"/>
            <exon e_start="64561" e_stop="64412"/>
            <exon e_start="64243" e_stop="64236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.398" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.887" e_score="0.880"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67312" e_stop="66962" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.899">
            <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65915" e_stop="65391" e_length="525"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.976">
            <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="64779" e_stop="64612" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.398" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64611" i_stop="64562" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.880">
            <gDNA_exon_boundary e_start="64561" e_stop="64412" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.887">
            <gDNA_intron_boundary i_start="64411" i_stop="64244" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="64243" e_stop="64236" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67312" stop="66962"/>
              <exon start="65915" stop="65499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67307" stop="66962"/>
              <exon start="65915" stop="65717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67307" stop="67007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67274" stop="66962"/>
              <exon start="65915" stop="65395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67260" stop="66962"/>
              <exon start="65915" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="66962"/>
              <exon start="65915" stop="65392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67229" stop="66962"/>
              <exon start="65915" stop="65633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67158" stop="66962"/>
              <exon start="65915" stop="65391"/>
              <exon start="64779" stop="64700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67158" stop="66962"/>
              <exon start="65915" stop="65554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67146" stop="66962"/>
              <exon start="65915" stop="65556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65855" stop="65391"/>
              <exon start="64779" stop="64702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65777" stop="65435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65666" stop="65391"/>
              <exon start="64779" stop="64612"/>
              <exon start="64561" stop="64412"/>
              <exon start="64243" stop="64236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGTTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG : GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA : GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAGTTTTTGATCCTACT : TGAAAAAATGTACTTATGGACCATGCTTATAGGAACTATATAGTAAATAGTATTTTCATTTTGATTTCTCCATTTGCTCTGTAATTTTTACTTTTGGAATGAAGATTTTGTCAAAACATGATGCAGGGTTGTGCTCTGAATTTCAAAGAA : AAACCAAA</gDNA_template>
            <first_frame> S  S  F  L  L  F  S  P  A  F  A  L  L  S  G  Y  P  F  F  T  H  S  L  C  L  L  Q  R  Y  N  F  V  M  T  L  L  R  N  *  L  K  Q  R  G  K  L  W  I  G  K  N  S  S  S  S  H  R  C  R  R  R  S  R  R  R  R  N  *  T  E  Q  S  V  V  G  C  L  *  K  *  *  R  M  S  K  W  K  F  *  G  S  K  S  L  F  M  L  L  F  V  N  S  L  L  I  C  I  N  P  W  L  H  N  T  I  L  L  :  E  P  G  W  E  I  C  T  A  I  H  W  *  H  L  L  V  I  K  S  L  V  D  N  A  G  L  Q  H  L  C  N  F  R  F  L  S  A  Y  L  N  K  A  M  E  L  Q  P  N  R  R  S  K  R  *  L  L  N  Y  L  N  M  A  K  F  L  K  Q  M  C  I  I  G  F  K  I  G  V  L  D  Q  K  G  S  N  R  L  Q  Q  Q  T  T  L  N  Q  R  W  R  Q  R  L  S  R  P  M  K  R  K  Q  S  Q  R  I  C  S  L  L  T  C  L  L  Q  W  L  K  I  L  A  M  R  T  L  T  *  A  L  E  C  I  H  *  I  H  E  P  V  N  P  S  L  C  F  H  Q  T  V  V  Q  N  L  L  Q  V  M  A  K  C  P  S  M  E  C  L  I  Q  :  E  W  T  S  *  W  E  R  W  K  C  L  G  A  I  I  H  I  Y  M  Q  T  T  T  T  *  P  A  N  Y  Q  F  G  N  *  V  S  A  N  *  N  E  T  R  S  P  K  T  L  A  G  V  F  D  P  T  :  *  K  N  V  L  M  D  H  A  Y  R  N  Y  I  V  N  S  I  F  I  L  I  S  P  F  A  L  *  F  L  L  L  E  *  R  F  C  Q  N  M  M  Q  G  C  A  L  N  F  K  E  :  K  P   </first_frame>
            <second_frame>  V  V  F  F  S  S  L  P  L  L  L  Y  F  L  V  T  L  F  L  L  T  L  S  V  Y  F  K  D  T  I  L  *  *  P  F  *  G  I  D  *  N  K  E  E  N  Y  G  L  G  K  T  A  A  A  A  T  G  V  G  A  A  A  D  G  G  G  I  E  R  N  S  Q  W  W  D  V  C  E  S  D  D  G  *  A  N  G  S  F  K  E  A  N  R  C  L  C  Y  Y  L  *  T  A  C  *  F  A  *  I  H  G  F  T  T  R  S  C  W :   S  Q  A  G  K  S  V  L  R  S  T  G  D  I  C  W  S  *  N  H  W  *  T  T  L  D  S  N  T  Y  A  T  S  D  S  *  A  H  I  *  T  R  Q  W  N  S  N  Q  T  E  D  Q  R  D  N  F  *  I  I  S  T  W  P  N  F  *  N  K  C  V  *  L  V  S  K  *  A  C  S  I  K  K  E  A  T  G  C  S  N  K  Q  H  *  I  R  G  G  D  R  G  *  V  A  Q  *  K  E  N  K  A  R  G  S  A  V  F  S  H  A  Y  F  N  G  *  R  S  W  L  *  E  P  *  R  E  L  W  N  A  F  T  R  S  T  N  Q  *  T  R  A  Y  V  S  I  R  R  *  F  K  T  C  C  K  L  W  P  N  V  L  L  W  N  V  *  S  K :   N  G  P  A  N  G  K  D  G  S  A  W  E  L  S  S  I  Y  T  C  R  R  L  Q  H  D  R  L  T  T  N  L  E  T  K  F  Q  Q  I  R  M  R  L  E  A  P  K  L  *  P  E  F  L  I  L  L :   E  K  M  Y  L  W  T  M  L  I  G  T  I  *  *  I  V  F  S  F  *  F  L  H  L  L  C  N  F  Y  F  W  N  E  D  F  V  K  T  *  C  R  V  V  L  *  I  S  K  K :   N  Q  </second_frame>
            <third_frame>   *  F  S  S  L  L  S  R  F  C  F  T  F  W  L  P  F  F  Y  S  L  S  L  F  T  S  K  I  Q  F  C  D  D  P  F  K  E  L  T  K  T  K  R  K  I  M  D  W  E  K  Q  Q  Q  Q  P  P  V  S  A  P  Q  Q  T  A  E  E  L  N  G  T  V  S  G  G  M  F  V  K  V  M  T  D  E  Q  M  E  V  L  R  K  Q  I  A  V  Y  A  T  I  C  E  Q  L  V  D  L  H  K  S  M  A  S  Q  H  D  L  A   : G  A  R  L  G  N  L  Y  C  D  P  L  V  T  S  A  G  H  K  I  T  G  R  Q  R  W  T  P  T  P  M  Q  L  Q  I  L  E  R  I  F  E  Q  G  N  G  T  P  T  K  Q  K  I  K  E  I  T  S  E  L  S  Q  H  G  Q  I  S  E  T  N  V  Y  N  W  F  Q  N  R  R  A  R  S  K  R  K  Q  Q  V  A  A  T  N  N  T  E  S  E  V  E  T  E  V  E  S  P  N  E  K  K  T  K  P  E  D  L  Q  S  S  H  M  P  T  S  M  A  E  D  L  G  Y  E  N  P  D  V  S  S  G  M  H  S  L  D  P  R  T  S  K  P  E  P  M  F  P  S  D  G  S  S  K  P  A  A  S  Y  G  Q  M  S  F  Y  G  M  S  N  P   : R  M  D  Q  L  M  G  K  M  E  V  P  G  S  Y  H  P  Y  I  H  A  D  D  Y  N  M  T  G  *  L  P  I  W  K  L  S  F  S  K  L  E  *  D  *  K  P  Q  N  S  S  R  S  F  *  S  Y   : L  K  K  C  T  Y  G  P  C  L  *  E  L  Y  S  K  *  Y  F  H  F  D  F  S  I  C  S  V  I  F  T  F  G  M  K  I  L  S  K  H  D  A  G  L  C  S  E  F  Q  R   : K  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67307" stop="66962"/>
                    <exon start="65915" stop="65391"/>
                    <exon start="64779" stop="64694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLLSRFCFTFWLPFFYSLSLFTSKIQFCDDPFKELTKTKRKIMDWEKQQQQPPVSAPQQTAEELNGTVSGGMFVKVMTDEQMEVLRKQIAVYATICEQLVDLHKSMASQHDLAGARLGNLYCDPLVTSAGHKITGRQRWTPTPMQLQILERIFEQGNGTPTKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQVAATNNTESEVETEVESPNEKKTKPEDLQSSHMPTSMAEDLGYENPDVSSGMHSLDPRTSKPEPMFPSDGSSKPAASYGQMSFYGMSNPRMDQLMGKMEVPGSYHPYIHADDYNMTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="67312" e_stop="66962"/>
            <exon e_start="65915" e_stop="65391"/>
            <exon e_start="64779" e_stop="64612"/>
            <exon e_start="64561" e_stop="64407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.398" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67312" e_stop="66962" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.899">
            <gDNA_intron_boundary i_start="66961" i_stop="65916" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65915" e_stop="65391" e_length="525"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.976">
            <gDNA_intron_boundary i_start="65390" i_stop="64780" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="64779" e_stop="64612" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.398" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64611" i_stop="64562" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.884">
            <gDNA_exon_boundary e_start="64561" e_stop="64407" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67312" stop="66962"/>
              <exon start="65915" stop="65499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67307" stop="66962"/>
              <exon start="65915" stop="65717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67307" stop="67007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67274" stop="66962"/>
              <exon start="65915" stop="65395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67260" stop="66962"/>
              <exon start="65915" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="66962"/>
              <exon start="65915" stop="65392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67229" stop="66962"/>
              <exon start="65915" stop="65633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67158" stop="66962"/>
              <exon start="65915" stop="65391"/>
              <exon start="64779" stop="64700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67158" stop="66962"/>
              <exon start="65915" stop="65554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67146" stop="66962"/>
              <exon start="65915" stop="65556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65855" stop="65391"/>
              <exon start="64779" stop="64702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65777" stop="65435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65669" stop="65391"/>
              <exon start="64779" stop="64612"/>
              <exon start="64561" stop="64407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGTTTTCTTCTCTTCTCTCCCGCTTTTGCTTTACTTTCTGGTTACCCTTTTTTTACTCACTCTCTCTGTTTACTTCAAAGATACAATTTTGTGATGACCCTTTTAAGGAATTGACTAAAACAAAGAGGAAAATTATGGATTGGGAAAAACAGCAGCAGCAGCCACCGGTGTCGGCGCCGCAGCAGACGGCGGAGGAATTGAACGGAACAGTCAGTGGTGGGATGTTTGTGAAAGTGATGACGGATGAGCAAATGGAAGTTTTAAGGAAGCAAATCGCTGTTTATGCTACTATTTGTGAACAGCTTGTTGATTTGCATAAATCCATGGCTTCACAACACGATCTTGCTG : GAGCCAGGCTGGGAAATCTGTACTGCGATCCACTGGTGACATCTGCTGGTCATAAAATCACTGGTAGACAACGCTGGACTCCAACACCTATGCAACTTCAGATTCTTGAGCGCATATTTGAACAAGGCAATGGAACTCCAACCAAACAGAAGATCAAAGAGATAACTTCTGAATTATCTCAACATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAAAATAGGCGTGCTCGATCAAAAAGGAAGCAACAGGTTGCAGCAACAAACAACACTGAATCAGAGGTGGAGACAGAGGTTGAGTCGCCCAATGAAAAGAAAACAAAGCCAGAGGATCTGCAGTCTTCTCACATGCCTACTTCAATGGCTGAAGATCTTGGCTATGAGAACCCTGACGTGAGCTCTGGAATGCATTCACTAGATCCACGAACCAGTAAACCCGAGCCTATGTTTCCATCAGACGGTAGTTCAAAACCTGCTGCAAGTTATGGCCAAATGTCCTTCTATGGAATGTCTAATCCAA : GAATGGACCAGCTAATGGGAAAGATGGAAGTGCCTGGGAGCTATCATCCATATATACATGCAGACGACTACAACATGACCGGCTAACTACCAATTTGGAAACTAAGTTTCAGCAAATTAGAATGAGACTAGAAGCCCCAAAACTCTAGCCGGAGTTTTTGATCCTACT : TGAAAAAATGTACTTATGGACCATGCTTATAGGAACTATATAGTAAATAGTATTTTCATTTTGATTTCTCCATTTGCTCTGTAATTTTTACTTTTGGAATGAAGATTTTGTCAAAACATGATGCAGGGTTGTGCTCTGAATTTCAAAGAAATGTT</gDNA_template>
            <first_frame> S  S  F  L  L  F  S  P  A  F  A  L  L  S  G  Y  P  F  F  T  H  S  L  C  L  L  Q  R  Y  N  F  V  M  T  L  L  R  N  *  L  K  Q  R  G  K  L  W  I  G  K  N  S  S  S  S  H  R  C  R  R  R  S  R  R  R  R  N  *  T  E  Q  S  V  V  G  C  L  *  K  *  *  R  M  S  K  W  K  F  *  G  S  K  S  L  F  M  L  L  F  V  N  S  L  L  I  C  I  N  P  W  L  H  N  T  I  L  L  :  E  P  G  W  E  I  C  T  A  I  H  W  *  H  L  L  V  I  K  S  L  V  D  N  A  G  L  Q  H  L  C  N  F  R  F  L  S  A  Y  L  N  K  A  M  E  L  Q  P  N  R  R  S  K  R  *  L  L  N  Y  L  N  M  A  K  F  L  K  Q  M  C  I  I  G  F  K  I  G  V  L  D  Q  K  G  S  N  R  L  Q  Q  Q  T  T  L  N  Q  R  W  R  Q  R  L  S  R  P  M  K  R  K  Q  S  Q  R  I  C  S  L  L  T  C  L  L  Q  W  L  K  I  L  A  M  R  T  L  T  *  A  L  E  C  I  H  *  I  H  E  P  V  N  P  S  L  C  F  H  Q  T  V  V  Q  N  L  L  Q  V  M  A  K  C  P  S  M  E  C  L  I  Q  :  E  W  T  S  *  W  E  R  W  K  C  L  G  A  I  I  H  I  Y  M  Q  T  T  T  T  *  P  A  N  Y  Q  F  G  N  *  V  S  A  N  *  N  E  T  R  S  P  K  T  L  A  G  V  F  D  P  T  :  *  K  N  V  L  M  D  H  A  Y  R  N  Y  I  V  N  S  I  F  I  L  I  S  P  F  A  L  *  F  L  L  L  E  *  R  F  C  Q  N  M  M  Q  G  C  A  L  N  F  K  E  M   </first_frame>
            <second_frame>  V  V  F  F  S  S  L  P  L  L  L  Y  F  L  V  T  L  F  L  L  T  L  S  V  Y  F  K  D  T  I  L  *  *  P  F  *  G  I  D  *  N  K  E  E  N  Y  G  L  G  K  T  A  A  A  A  T  G  V  G  A  A  A  D  G  G  G  I  E  R  N  S  Q  W  W  D  V  C  E  S  D  D  G  *  A  N  G  S  F  K  E  A  N  R  C  L  C  Y  Y  L  *  T  A  C  *  F  A  *  I  H  G  F  T  T  R  S  C  W :   S  Q  A  G  K  S  V  L  R  S  T  G  D  I  C  W  S  *  N  H  W  *  T  T  L  D  S  N  T  Y  A  T  S  D  S  *  A  H  I  *  T  R  Q  W  N  S  N  Q  T  E  D  Q  R  D  N  F  *  I  I  S  T  W  P  N  F  *  N  K  C  V  *  L  V  S  K  *  A  C  S  I  K  K  E  A  T  G  C  S  N  K  Q  H  *  I  R  G  G  D  R  G  *  V  A  Q  *  K  E  N  K  A  R  G  S  A  V  F  S  H  A  Y  F  N  G  *  R  S  W  L  *  E  P  *  R  E  L  W  N  A  F  T  R  S  T  N  Q  *  T  R  A  Y  V  S  I  R  R  *  F  K  T  C  C  K  L  W  P  N  V  L  L  W  N  V  *  S  K :   N  G  P  A  N  G  K  D  G  S  A  W  E  L  S  S  I  Y  T  C  R  R  L  Q  H  D  R  L  T  T  N  L  E  T  K  F  Q  Q  I  R  M  R  L  E  A  P  K  L  *  P  E  F  L  I  L  L :   E  K  M  Y  L  W  T  M  L  I  G  T  I  *  *  I  V  F  S  F  *  F  L  H  L  L  C  N  F  Y  F  W  N  E  D  F  V  K  T  *  C  R  V  V  L  *  I  S  K  K  C  </second_frame>
            <third_frame>   *  F  S  S  L  L  S  R  F  C  F  T  F  W  L  P  F  F  Y  S  L  S  L  F  T  S  K  I  Q  F  C  D  D  P  F  K  E  L  T  K  T  K  R  K  I  M  D  W  E  K  Q  Q  Q  Q  P  P  V  S  A  P  Q  Q  T  A  E  E  L  N  G  T  V  S  G  G  M  F  V  K  V  M  T  D  E  Q  M  E  V  L  R  K  Q  I  A  V  Y  A  T  I  C  E  Q  L  V  D  L  H  K  S  M  A  S  Q  H  D  L  A   : G  A  R  L  G  N  L  Y  C  D  P  L  V  T  S  A  G  H  K  I  T  G  R  Q  R  W  T  P  T  P  M  Q  L  Q  I  L  E  R  I  F  E  Q  G  N  G  T  P  T  K  Q  K  I  K  E  I  T  S  E  L  S  Q  H  G  Q  I  S  E  T  N  V  Y  N  W  F  Q  N  R  R  A  R  S  K  R  K  Q  Q  V  A  A  T  N  N  T  E  S  E  V  E  T  E  V  E  S  P  N  E  K  K  T  K  P  E  D  L  Q  S  S  H  M  P  T  S  M  A  E  D  L  G  Y  E  N  P  D  V  S  S  G  M  H  S  L  D  P  R  T  S  K  P  E  P  M  F  P  S  D  G  S  S  K  P  A  A  S  Y  G  Q  M  S  F  Y  G  M  S  N  P   : R  M  D  Q  L  M  G  K  M  E  V  P  G  S  Y  H  P  Y  I  H  A  D  D  Y  N  M  T  G  *  L  P  I  W  K  L  S  F  S  K  L  E  *  D  *  K  P  Q  N  S  S  R  S  F  *  S  Y   : L  K  K  C  T  Y  G  P  C  L  *  E  L  Y  S  K  *  Y  F  H  F  D  F  S  I  C  S  V  I  F  T  F  G  M  K  I  L  S  K  H  D  A  G  L  C  S  E  F  Q  R  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67307" stop="66962"/>
                    <exon start="65915" stop="65391"/>
                    <exon start="64779" stop="64694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLLSRFCFTFWLPFFYSLSLFTSKIQFCDDPFKELTKTKRKIMDWEKQQQQPPVSAPQQTAEELNGTVSGGMFVKVMTDEQMEVLRKQIAVYATICEQLVDLHKSMASQHDLAGARLGNLYCDPLVTSAGHKITGRQRWTPTPMQLQILERIFEQGNGTPTKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQVAATNNTESEVETEVESPNEKKTKPEDLQSSHMPTSMAEDLGYENPDVSSGMHSLDPRTSKPEPMFPSDGSSKPAASYGQMSFYGMSNPRMDQLMGKMEVPGSYHPYIHADDYNMTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78973" PGL_stop="76307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78973" e_stop="78784"/>
            <exon e_start="78032" e_stop="77888"/>
            <exon e_start="77476" e_stop="77397"/>
            <exon e_start="76897" e_stop="76307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.988" e_score="0.979"/>
          <exon-intron don_prob="0.701" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.988"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="78973" e_stop="78784" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.988">
            <gDNA_intron_boundary i_start="78783" i_stop="78033" i_length="751"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="78032" e_stop="77888" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.701" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77887" i_stop="77477" i_length="411"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="77476" e_stop="77397" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="77396" i_stop="76898" i_length="499"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="76897" e_stop="76307" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78973" stop="78784"/>
              <exon start="78032" stop="77888"/>
              <exon start="77476" stop="77397"/>
              <exon start="76897" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76877" stop="76307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACTTTCTTCTTCTTCTTGAAAAAAAAACTAAACGTCAACTCCAGCTCTTACAAACAGCTTTTCTCTCTGTCAATACACATACATTCCTCTTCTTTTTTTTTAATAATAATAATTTTCTCTGTTTCTTCAAACAAGCTTGAGTTTTATGATGAAAACTTTTTCTATGGTTATTGAAAGTTGAAATGATG : GGTGTGGACTAGACATGGAGTTACTAGCTCTTTAGGATTATTGTGCAAGTTGGGATTTTCTGCTGCATGAGAAGCTTGTTGGATCTCATTGATTTTGATCAAGGAGGGATGGCAAGGAAGTTTCTTTCACAAAAAAGACATGGTG : GTGTCGATACTCCTAGAAATAGCTTGGAGCTTCCTGTTGAAGCGTCTCAATGGTTCTATGCTGGAGGGGACAAAGCACAG : TGCGCTTATCAGATGATTGATTGGCAAGAGAAGAACTGTTACGGGTACGAGGCTCCAATGAAGAAACTGATCAGTGAAGAAATAGCCAGAAGACCAAACACAGGATATAATGCACCTAGTGTGGTAGCACGTCTAATGGGAGTTGATACGTTACCATTAGATACAAGACCATTACCAAAGCATGTAGAGAAAAAGAATGAAATGAAGGATGGGAACCCTTCTAAAGAGGAATGGTTGAGAAAGGTTTCCATTGATCATGCAACCCAGTCCTCCAGACAGAAAATCTCAATTCCCTTTAACCATGATGAATCATGTGACTCTGACCGACAGATTGATAGCCGAAAACCAAACAAATATAAACCTCGTGAACATCCTCAGGAGGAGGAACTACAGAAGTTCAAAAAAGATTTTGAAGCATGGCAAGCAGCAAGGTTCAAGGAATGTTCGAAGTTTGTTGAACATGGCACCAGTCCAAGTCAATGGTTAGCACAGCAAAGCCTGAACAAGGAAAAGTTGACTCTTTATGCAAATTCAATGAGAACCGCAGCTTCTGAGAAACCTACAGAGCTTAGAGGGCATACAGTAGCAGTG</gDNA_template>
            <first_frame> P  L  S  S  S  S  *  K  K  N  *  T  S  T  P  A  L  T  N  S  F  S  L  C  Q  Y  T  Y  I  P  L  L  F  F  *  *  *  *  F  S  L  F  L  Q  T  S  L  S  F  M  M  K  T  F  S  M  V  I  E  S  *  N  D   : G  C  G  L  D  M  E  L  L  A  L  *  D  Y  C  A  S  W  D  F  L  L  H  E  K  L  V  G  S  H  *  F  *  S  R  R  D  G  K  E  V  S  F  T  K  K  T  W  W :   C  R  Y  S  *  K  *  L  G  A  S  C  *  S  V  S  M  V  L  C  W  R  G  Q  S  T   : V  R  L  S  D  D  *  L  A  R  E  E  L  L  R  V  R  G  S  N  E  E  T  D  Q  *  R  N  S  Q  K  T  K  H  R  I  *  C  T  *  C  G  S  T  S  N  G  S  *  Y  V  T  I  R  Y  K  T  I  T  K  A  C  R  E  K  E  *  N  E  G  W  E  P  F  *  R  G  M  V  E  K  G  F  H  *  S  C  N  P  V  L  Q  T  E  N  L  N  S  L  *  P  *  *  I  M  *  L  *  P  T  D  *  *  P  K  T  K  Q  I  *  T  S  *  T  S  S  G  G  G  T  T  E  V  Q  K  R  F  *  S  M  A  S  S  K  V  Q  G  M  F  E  V  C  *  T  W  H  Q  S  K  S  M  V  S  T  A  K  P  E  Q  G  K  V  D  S  L  C  K  F  N  E  N  R  S  F  *  E  T  Y  R  A  *  R  A  Y  S  S  S  </first_frame>
            <second_frame>  H  F  L  L  L  L  E  K  K  T  K  R  Q  L  Q  L  L  Q  T  A  F  L  S  V  N  T  H  T  F  L  F  F  F  F  N  N  N  N  F  L  C  F  F  K  Q  A  *  V  L  *  *  K  L  F  L  W  L  L  K  V  E  M  M  :  G  V  D  *  T  W  S  Y  *  L  F  R  I  I  V  Q  V  G  I  F  C  C  M  R  S  L  L  D  L  I  D  F  D  Q  G  G  M  A  R  K  F  L  S  Q  K  R  H  G   : G  V  D  T  P  R  N  S  L  E  L  P  V  E  A  S  Q  W  F  Y  A  G  G  D  K  A  Q  :  C  A  Y  Q  M  I  D  W  Q  E  K  N  C  Y  G  Y  E  A  P  M  K  K  L  I  S  E  E  I  A  R  R  P  N  T  G  Y  N  A  P  S  V  V  A  R  L  M  G  V  D  T  L  P  L  D  T  R  P  L  P  K  H  V  E  K  K  N  E  M  K  D  G  N  P  S  K  E  E  W  L  R  K  V  S  I  D  H  A  T  Q  S  S  R  Q  K  I  S  I  P  F  N  H  D  E  S  C  D  S  D  R  Q  I  D  S  R  K  P  N  K  Y  K  P  R  E  H  P  Q  E  E  E  L  Q  K  F  K  K  D  F  E  A  W  Q  A  A  R  F  K  E  C  S  K  F  V  E  H  G  T  S  P  S  Q  W  L  A  Q  Q  S  L  N  K  E  K  L  T  L  Y  A  N  S  M  R  T  A  A  S  E  K  P  T  E  L  R  G  H  T  V  A  V </second_frame>
            <third_frame>   T  F  F  F  F  L  K  K  K  L  N  V  N  S  S  S  Y  K  Q  L  F  S  L  S  I  H  I  H  S  S  S  F  F  L  I  I  I  I  F  S  V  S  S  N  K  L  E  F  Y  D  E  N  F  F  Y  G  Y  *  K  L  K  *  W :   V  W  T  R  H  G  V  T  S  S  L  G  L  L  C  K  L  G  F  S  A  A  *  E  A  C  W  I  S  L  I  L  I  K  E  G  W  Q  G  S  F  F  H  K  K  D  M  V  :  V  S  I  L  L  E  I  A  W  S  F  L  L  K  R  L  N  G  S  M  L  E  G  T  K  H  S :   A  L  I  R  *  L  I  G  K  R  R  T  V  T  G  T  R  L  Q  *  R  N  *  S  V  K  K  *  P  E  D  Q  T  Q  D  I  M  H  L  V  W  *  H  V  *  W  E  L  I  R  Y  H  *  I  Q  D  H  Y  Q  S  M  *  R  K  R  M  K  *  R  M  G  T  L  L  K  R  N  G  *  E  R  F  P  L  I  M  Q  P  S  P  P  D  R  K  S  Q  F  P  L  T  M  M  N  H  V  T  L  T  D  R  L  I  A  E  N  Q  T  N  I  N  L  V  N  I  L  R  R  R  N  Y  R  S  S  K  K  I  L  K  H  G  K  Q  Q  G  S  R  N  V  R  S  L  L  N  M  A  P  V  Q  V  N  G  *  H  S  K  A  *  T  R  K  S  *  L  F  M  Q  I  Q  *  E  P  Q  L  L  R  N  L  Q  S  L  E  G  I  Q  *  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78005" stop="77888"/>
                    <exon start="77476" stop="77397"/>
                    <exon start="76897" stop="76307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFRIIVQVGIFCCMRSLLDLIDFDQGGMARKFLSQKRHGGVDTPRNSLELPVEASQWFYAGGDKAQCAYQMIDWQEKNCYGYEAPMKKLISEEIARRPNTGYNAPSVVARLMGVDTLPLDTRPLPKHVEKKNEMKDGNPSKEEWLRKVSIDHATQSSRQKISIPFNHDESCDSDRQIDSRKPNKYKPREHPQEEELQKFKKDFEAWQAARFKECSKFVEHGTSPSQWLAQQSLNKEKLTLYANSMRTAASEKPTELRGHTVAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="88176" PGL_stop="96203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88176" e_stop="88277"/>
            <exon e_start="89470" e_stop="89600"/>
            <exon e_start="94147" e_stop="94231"/>
            <exon e_start="94372" e_stop="94425"/>
            <exon e_start="94605" e_stop="94696"/>
            <exon e_start="94781" e_stop="94884"/>
            <exon e_start="95302" e_stop="95374"/>
            <exon e_start="96102" e_stop="96203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="0.951"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.916"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.965"/>
          <exon-intron don_prob="1.000" acc_prob="0.852" e_score="0.981"/>
          <exon-intron don_prob="0.882" acc_prob="0.986" e_score="0.957"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.986"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="88176" e_stop="88277" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="88278" i_stop="89469" i_length="1192"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="89470" e_stop="89600" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89601" i_stop="94146" i_length="4546"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="94147" e_stop="94231" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94232" i_stop="94371" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="94372" e_stop="94425" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.852">
            <gDNA_intron_boundary i_start="94426" i_stop="94604" i_length="179"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="94605" e_stop="94696" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.882" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94697" i_stop="94780" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="94781" e_stop="94884" e_length="104"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94885" i_stop="95301" i_length="417"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="95302" e_stop="95374" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="95375" i_stop="96101" i_length="727"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="96102" e_stop="96203" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88176" stop="88277"/>
              <exon start="89470" stop="89600"/>
              <exon start="94147" stop="94231"/>
              <exon start="94372" stop="94425"/>
              <exon start="94605" stop="94696"/>
              <exon start="94781" stop="94884"/>
              <exon start="95302" stop="95374"/>
              <exon start="96102" stop="96203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88176" stop="88277"/>
              <exon start="89470" stop="89600"/>
              <exon start="94147" stop="94231"/>
              <exon start="94372" stop="94425"/>
              <exon start="94605" stop="94696"/>
              <exon start="94781" stop="94884"/>
              <exon start="95302" stop="95374"/>
              <exon start="96102" stop="96196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGCCTCGATCTGTACGATTCCGGCGATTTTCCGGCAGAATAAGTAATATTTATGAGTATGTTGAAGAAGCTTGTTGAGAAGGCTTCTTTTGTCAAGAAG : CCTCGAGGAGATTTAGATGTTTTGAAGTCTGATGATGTAAATCCCCGATGTGTTTTCCATTACGGCATTCCATCAGGATCTGTGCTATCGGCATATGACTCTATCCAAAATATTATTGCCCTTGCTACAAA : AGATGGACGGATCAAATTATTTGGGAAAGATAGCACACAAGCTCTGCTGGTATCATCAGAGATGGTGTCAAGCAAATTTTTGCAG : TTTATGGAGAACCAAGGCCTCCTCATTAACATAAACTCCAATAACCGAATAGAG : GTCTGGGATGTAGAACAAAGGTATTTGTGTAATGTTCATGACTTCGACCGGGATATCACATCTTTTACAGTCATACAGCACACTATCTACCT : GTATCTTGGAGACTCGTCAGGACATGTTTCAGTTATGAAGGTTGTTAAAGAACCCTGTAATATAGAGAAAATGAAATACTGTATCCCTCTTTCGGCATCTCATG : GCCTATCAAATGAAGTTTCCGGGGATGCTGCTGTAGCCCATATACTACCTCAACCTGCTGCAGAAACTAAGAG : GGTGGCTATTGTTTACAAAGATGGTGTTATAACACTTTGGTCAATCCATGAAAGTAAAGCAATCTTTATAACCGGGGGGAGTCCTCTGCAATCTATGGGTCA</gDNA_template>
            <first_frame> Q  S  L  D  L  Y  D  S  G  D  F  P  A  E  *  V  I  F  M  S  M  L  K  K  L  V  E  K  A  S  F  V  K  K  :  P  R  G  D  L  D  V  L  K  S  D  D  V  N  P  R  C  V  F  H  Y  G  I  P  S  G  S  V  L  S  A  Y  D  S  I  Q  N  I  I  A  L  A  T  K :   D  G  R  I  K  L  F  G  K  D  S  T  Q  A  L  L  V  S  S  E  M  V  S  S  K  F  L  Q  :  F  M  E  N  Q  G  L  L  I  N  I  N  S  N  N  R  I  E  :  V  W  D  V  E  Q  R  Y  L  C  N  V  H  D  F  D  R  D  I  T  S  F  T  V  I  Q  H  T  I  Y  L :   Y  L  G  D  S  S  G  H  V  S  V  M  K  V  V  K  E  P  C  N  I  E  K  M  K  Y  C  I  P  L  S  A  S  H   : G  L  S  N  E  V  S  G  D  A  A  V  A  H  I  L  P  Q  P  A  A  E  T  K  R :   V  A  I  V  Y  K  D  G  V  I  T  L  W  S  I  H  E  S  K  A  I  F  I  T  G  G  S  P  L  Q  S  M  G   </first_frame>
            <second_frame>  R  A  S  I  C  T  I  P  A  I  F  R  Q  N  K  *  Y  L  *  V  C  *  R  S  L  L  R  R  L  L  L  S  R  S :   L  E  E  I  *  M  F  *  S  L  M  M  *  I  P  D  V  F  S  I  T  A  F  H  Q  D  L  C  Y  R  H  M  T  L  S  K  I  L  L  P  L  L  Q   : K  M  D  G  S  N  Y  L  G  K  I  A  H  K  L  C  W  Y  H  Q  R  W  C  Q  A  N  F  C  S :   L  W  R  T  K  A  S  S  L  T  *  T  P  I  T  E  *  R :   S  G  M  *  N  K  G  I  C  V  M  F  M  T  S  T  G  I  S  H  L  L  Q  S  Y  S  T  L  S  T   : C  I  L  E  T  R  Q  D  M  F  Q  L  *  R  L  L  K  N  P  V  I  *  R  K  *  N  T  V  S  L  F  R  H  L  M  :  A  Y  Q  M  K  F  P  G  M  L  L  *  P  I  Y  Y  L  N  L  L  Q  K  L  R   : G  W  L  L  F  T  K  M  V  L  *  H  F  G  Q  S  M  K  V  K  Q  S  L  *  P  G  G  V  L  C  N  L  W  V  </second_frame>
            <third_frame>   E  P  R  S  V  R  F  R  R  F  S  G  R  I  S  N  I  Y  E  Y  V  E  E  A  C  *  E  G  F  F  C  Q  E   : A  S  R  R  F  R  C  F  E  V  *  *  C  K  S  P  M  C  F  P  L  R  H  S  I  R  I  C  A  I  G  I  *  L  Y  P  K  Y  Y  C  P  C  Y  K  :  R  W  T  D  Q  I  I  W  E  R  *  H  T  S  S  A  G  I  I  R  D  G  V  K  Q  I  F  A   : V  Y  G  E  P  R  P  P  H  *  H  K  L  Q  *  P  N  R   : G  L  G  C  R  T  K  V  F  V  *  C  S  *  L  R  P  G  Y  H  I  F  Y  S  H  T  A  H  Y  L  P  :  V  S  W  R  L  V  R  T  C  F  S  Y  E  G  C  *  R  T  L  *  Y  R  E  N  E  I  L  Y  P  S  F  G  I  S  W :   P  I  K  *  S  F  R  G  C  C  C  S  P  Y  T  T  S  T  C  C  R  N  *  E  :  G  G  Y  C  L  Q  R  W  C  Y  N  T  L  V  N  P  *  K  *  S  N  L  Y  N  R  G  E  S  S  A  I  Y  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88221" stop="88277"/>
                    <exon start="89470" stop="89600"/>
                    <exon start="94147" stop="94231"/>
                    <exon start="94372" stop="94425"/>
                    <exon start="94605" stop="94696"/>
                    <exon start="94781" stop="94884"/>
                    <exon start="95302" stop="95374"/>
                    <exon start="96102" stop="96201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIFMSMLKKLVEKASFVKKPRGDLDVLKSDDVNPRCVFHYGIPSGSVLSAYDSIQNIIALATKDGRIKLFGKDSTQALLVSSEMVSSKFLQFMENQGLLININSNNRIEVWDVEQRYLCNVHDFDRDITSFTVIQHTIYLYLGDSSGHVSVMKVVKEPCNIEKMKYCIPLSASHGLSNEVSGDAAVAHILPQPAAETKRVAIVYKDGVITLWSIHESKAIFITGGSPLQSMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="97785" PGL_stop="101238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97785" e_stop="97887"/>
            <exon e_start="97971" e_stop="98034"/>
            <exon e_start="98208" e_stop="98329"/>
            <exon e_start="98807" e_stop="99053"/>
            <exon e_start="99163" e_stop="99314"/>
            <exon e_start="99403" e_stop="99524"/>
            <exon e_start="100692" e_stop="100815"/>
            <exon e_start="100909" e_stop="100967"/>
            <exon e_start="101150" e_stop="101238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="0.816" e_score="0.990"/>
          <exon-intron don_prob="0.897" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.701" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.890" e_score="0.943"/>
          <exon-intron don_prob="0.953" acc_prob="0.950" e_score="0.976"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.865"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="97785" e_stop="97887" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="0.816">
            <gDNA_intron_boundary i_start="97888" i_stop="97970" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97971" e_stop="98034" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.897" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98035" i_stop="98207" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98208" e_stop="98329" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="98330" i_stop="98806" i_length="477"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98807" e_stop="99053" e_length="247"/>
          </exon>
          <intron i_serial="4" don_prob="0.701" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99054" i_stop="99162" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99163" e_stop="99314" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.891" acc_prob="0.815">
            <gDNA_intron_boundary i_start="99315" i_stop="99402" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="99403" e_stop="99524" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.890">
            <gDNA_intron_boundary i_start="99525" i_stop="100691" i_length="1167"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="100692" e_stop="100815" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.953" acc_prob="0.950">
            <gDNA_intron_boundary i_start="100816" i_stop="100908" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100909" e_stop="100967" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100968" i_stop="101149" i_length="182"/>
          </intron>
          <exon e_serial="9" e_score="0.865">
            <gDNA_exon_boundary e_start="101150" e_stop="101238" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="97887"/>
              <exon start="97971" stop="98034"/>
              <exon start="98208" stop="98329"/>
              <exon start="98807" stop="99053"/>
              <exon start="99163" stop="99314"/>
              <exon start="99403" stop="99496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="97887"/>
              <exon start="97971" stop="98034"/>
              <exon start="98208" stop="98329"/>
              <exon start="98807" stop="99053"/>
              <exon start="99163" stop="99314"/>
              <exon start="99403" stop="99458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="97887"/>
              <exon start="97971" stop="98034"/>
              <exon start="98208" stop="98329"/>
              <exon start="98807" stop="99041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98880" stop="99053"/>
              <exon start="99163" stop="99314"/>
              <exon start="99403" stop="99524"/>
              <exon start="100692" stop="100815"/>
              <exon start="100909" stop="100967"/>
              <exon start="101150" stop="101238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425866" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGCAGAGTGAGGACAACCTTTCCTTAAGTGGTGTACCCTTAACGGCATTATGTCTTACATCTGACTTACATATCCTCATTTCTGGTGATCAAAGTGGAACG : GTACGTATCTACAAGTTCAAAACTGAGTTTTTTGCCCCAGATACTAGTTTTCTATCCTTTCAAG : GTTCAAAGAAAGGAAGCAACCCAATCCAGAGCATTAAGCTTGTCAAAGTTAATGGAGCTGTACTTTCTATAAGTACCAGTGAGGATTCTAAGTATTTTGCTGTTGGTTCTGACCAAGGATAT : GTGGTATTAATTGATTCTGACAGCAAGACTATACTGTATCAAACACATATTGCCAGTGAACTCTGTGCAGGTGTCATGTCTATGCAGTTCAACACGTGTAGCTTGCATGGATTCGACAAGAATATCTTAGTGGTAGCGACTAAGGATTCATCAGTCTTGGCCCTTGAGACAGAAACAGGAAATATATTAAGCCCTTCCAGTGTCCATCCAAAGAAACCTTCCAGAGCTTTACTTATGCAGATTTTGG : ATGGACTTGAAATGTCTGGTCGAGGATTAAGCATTTCAGATGGTATAGACATTATTAAGGGGAATTCGGATAATGTTGCATCAAAGCAACCATTAGTATTGATCTGTTCTGAAAAGGCTGTGTATGTCTATTCCTTATTGCATATTATTCAG : GGTATTAAGAAAGTATACTACAAAAAGAAGTTCCATTCCACGCTATGTTGCTGGGCATCAACATTTGACATGCCTGAGGCGGGCCTTATGCTTCTCTTCTCGAATGGAAAGATTGAGATTAG : GTCTCTTCCAGAGTTGTCCCTTTTAAAGGAAACTTCAGTTAGAGGCCTCGTACTTTCGCCACCGAAGGCAAACGCCATAGCTGACCATTCAGTATGCGCTTCAAAAACTGGTGAACTCATAGTG : GTTGACAGGGATCAAGAAATGTTCTTCGTCTCAGTTTCCTTGCAAAATGACACCTTCAG : GTTCCTGGACTCTGCTTCTCATGTTTATGATAGAGATTTAGTGGTTGAACCAGGGAAGATCTATGCACCCATCATCCAAAAAGAAAAGA</gDNA_template>
            <first_frame> S  A  E  *  G  Q  P  F  L  K  W  C  T  L  N  G  I  M  S  Y  I  *  L  T  Y  P  H  F  W  *  S  K  W  N   : G  T  Y  L  Q  V  Q  N  *  V  F  C  P  R  Y  *  F  S  I  L  S  R :   F  K  E  R  K  Q  P  N  P  E  H  *  A  C  Q  S  *  W  S  C  T  F  Y  K  Y  Q  *  G  F  *  V  F  C  C  W  F  *  P  R  I   : C  G  I  N  *  F  *  Q  Q  D  Y  T  V  S  N  T  Y  C  Q  *  T  L  C  R  C  H  V  Y  A  V  Q  H  V  *  L  A  W  I  R  Q  E  Y  L  S  G  S  D  *  G  F  I  S  L  G  P  *  D  R  N  R  K  Y  I  K  P  F  Q  C  P  S  K  E  T  F  Q  S  F  T  Y  A  D  F  G :   W  T  *  N  V  W  S  R  I  K  H  F  R  W  Y  R  H  Y  *  G  E  F  G  *  C  C  I  K  A  T  I  S  I  D  L  F  *  K  G  C  V  C  L  F  L  I  A  Y  Y  S   : G  Y  *  E  S  I  L  Q  K  E  V  P  F  H  A  M  L  L  G  I  N  I  *  H  A  *  G  G  P  Y  A  S  L  L  E  W  K  D  *  D  *  :  V  S  S  R  V  V  P  F  K  G  N  F  S  *  R  P  R  T  F  A  T  E  G  K  R  H  S  *  P  F  S  M  R  F  K  N  W  *  T  H  S   : G  *  Q  G  S  R  N  V  L  R  L  S  F  L  A  K  *  H  L  Q  :  V  P  G  L  C  F  S  C  L  *  *  R  F  S  G  *  T  R  E  D  L  C  T  H  H  P  K  R  K   </first_frame>
            <second_frame>  L  Q  S  E  D  N  L  S  L  S  G  V  P  L  T  A  L  C  L  T  S  D  L  H  I  L  I  S  G  D  Q  S  G  T  :  V  R  I  Y  K  F  K  T  E  F  F  A  P  D  T  S  F  L  S  F  Q   : G  S  K  K  G  S  N  P  I  Q  S  I  K  L  V  K  V  N  G  A  V  L  S  I  S  T  S  E  D  S  K  Y  F  A  V  G  S  D  Q  G  Y  :  V  V  L  I  D  S  D  S  K  T  I  L  Y  Q  T  H  I  A  S  E  L  C  A  G  V  M  S  M  Q  F  N  T  C  S  L  H  G  F  D  K  N  I  L  V  V  A  T  K  D  S  S  V  L  A  L  E  T  E  T  G  N  I  L  S  P  S  S  V  H  P  K  K  P  S  R  A  L  L  M  Q  I  L   : D  G  L  E  M  S  G  R  G  L  S  I  S  D  G  I  D  I  I  K  G  N  S  D  N  V  A  S  K  Q  P  L  V  L  I  C  S  E  K  A  V  Y  V  Y  S  L  L  H  I  I  Q  :  G  I  K  K  V  Y  Y  K  K  K  F  H  S  T  L  C  C  W  A  S  T  F  D  M  P  E  A  G  L  M  L  L  F  S  N  G  K  I  E  I  R :   S  L  P  E  L  S  L  L  K  E  T  S  V  R  G  L  V  L  S  P  P  K  A  N  A  I  A  D  H  S  V  C  A  S  K  T  G  E  L  I  V  :  V  D  R  D  Q  E  M  F  F  V  S  V  S  L  Q  N  D  T  F  R :   F  L  D  S  A  S  H  V  Y  D  R  D  L  V  V  E  P  G  K  I  Y  A  P  I  I  Q  K  E  K  </second_frame>
            <third_frame>   C  R  V  R  T  T  F  P  *  V  V  Y  P  *  R  H  Y  V  L  H  L  T  Y  I  S  S  F  L  V  I  K  V  E  R :   Y  V  S  T  S  S  K  L  S  F  L  P  Q  I  L  V  F  Y  P  F  K  :  V  Q  R  K  E  A  T  Q  S  R  A  L  S  L  S  K  L  M  E  L  Y  F  L  *  V  P  V  R  I  L  S  I  L  L  L  V  L  T  K  D  M :   W  Y  *  L  I  L  T  A  R  L  Y  C  I  K  H  I  L  P  V  N  S  V  Q  V  S  C  L  C  S  S  T  R  V  A  C  M  D  S  T  R  I  S  *  W  *  R  L  R  I  H  Q  S  W  P  L  R  Q  K  Q  E  I  Y  *  A  L  P  V  S  I  Q  R  N  L  P  E  L  Y  L  C  R  F  W  :  M  D  L  K  C  L  V  E  D  *  A  F  Q  M  V  *  T  L  L  R  G  I  R  I  M  L  H  Q  S  N  H  *  Y  *  S  V  L  K  R  L  C  M  S  I  P  Y  C  I  L  F  R :   V  L  R  K  Y  T  T  K  R  S  S  I  P  R  Y  V  A  G  H  Q  H  L  T  C  L  R  R  A  L  C  F  S  S  R  M  E  R  L  R  L   : G  L  F  Q  S  C  P  F  *  R  K  L  Q  L  E  A  S  Y  F  R  H  R  R  Q  T  P  *  L  T  I  Q  Y  A  L  Q  K  L  V  N  S  *  W :   L  T  G  I  K  K  C  S  S  S  Q  F  P  C  K  M  T  P  S   : G  S  W  T  L  L  L  M  F  M  I  E  I  *  W  L  N  Q  G  R  S  M  H  P  S  S  K  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97786" stop="97887"/>
                    <exon start="97971" stop="98034"/>
                    <exon start="98208" stop="98329"/>
                    <exon start="98807" stop="99053"/>
                    <exon start="99163" stop="99314"/>
                    <exon start="99403" stop="99524"/>
                    <exon start="100692" stop="100815"/>
                    <exon start="100909" stop="100967"/>
                    <exon start="101150" stop="101237"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQSEDNLSLSGVPLTALCLTSDLHILISGDQSGTVRIYKFKTEFFAPDTSFLSFQGSKKGSNPIQSIKLVKVNGAVLSISTSEDSKYFAVGSDQGYVVLIDSDSKTILYQTHIASELCAGVMSMQFNTCSLHGFDKNILVVATKDSSVLALETETGNILSPSSVHPKKPSRALLMQILDGLEMSGRGLSISDGIDIIKGNSDNVASKQPLVLICSEKAVYVYSLLHIIQGIKKVYYKKKFHSTLCCWASTFDMPEAGLMLLFSNGKIEIRSLPELSLLKETSVRGLVLSPPKANAIADHSVCASKTGELIVVDRDQEMFFVSVSLQNDTFRFLDSASHVYDRDLVVEPGKIYAPIIQKEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="105809" PGL_stop="101238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105809" e_stop="105692"/>
            <exon e_start="105592" e_stop="105547"/>
            <exon e_start="105415" e_stop="105314"/>
            <exon e_start="105227" e_stop="105170"/>
            <exon e_start="105069" e_stop="105025"/>
            <exon e_start="104910" e_stop="104830"/>
            <exon e_start="104738" e_stop="104655"/>
            <exon e_start="104558" e_stop="104223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.769" acc_prob="0.547" e_score="0.890"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.890">
            <gDNA_exon_boundary e_start="105809" e_stop="105692" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.769" acc_prob="0.547">
            <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105592" e_stop="105547" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105415" e_stop="105314" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.977">
            <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105227" e_stop="105170" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.674" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105069" e_stop="105025" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104910" e_stop="104830" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104738" e_stop="104655" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.973">
            <gDNA_exon_boundary e_start="104558" e_stop="104223" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105809" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105754" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105749" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105743" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105740" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105739" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105739" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105734" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105733" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105730" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105728" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105725" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105722" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105722" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105720" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105408" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105346" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105207" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105204" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105202" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105182" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104896" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104893" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104862" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104709" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104557" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104533" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104504" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCCCTTGTTATTTCTCGCTCCCCTTCATATAGACCCCTTTCCCATTCACAACTCAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG : GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA : GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT : GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT : GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA : GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG : GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG : GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAAC</gDNA_template>
            <first_frame> K  A  L  V  I  S  R  S  P  S  Y  R  P  L  S  H  S  Q  L  N  T  Y  K  A  T  H  Q  I  H  T  N  E  *  Y  P  I  L  S  R   : G  F  I  M  K  G  A  K  S  K  A  K  A  D  T  K :   L  G  V  R  K  K  A  T  E  S  K  K  A  K  N  A  A  K  D  P  N  K  P  K  R  P  P  S  A  F  F  V  F  M :   E  E  F  R  K  T  Y  K  E  K  H  P  N  N  K  S  V  A  V  :  V  G  K  A  G  G  D  K  W  K  Q  L  S  D  E  :  E  K  A  P  Y  Q  A  K  A  E  K  R  K  A  E  Y  Q  K  S  M  D  A  Y  N  K  K  L  :  A  A  G  D  A  D  D  E  S  D  K  S  K  S  E  V  H  D  D  D  E  D  D  D  G  S  E  E  :  E  D  D  D  *  T  I  S  R  L  L  K  F  R  E  *  W  I  S  S  C  R  N  C  S  V  L  P  *  *  I  D  A  L  F  F  Y  I  F  C  L  V  F  V  L  *  G  F  S  L  D  R  K  V  K  F  R  *  L  A  L  K  A  Q  V  V  Y  V  I  S  L  F  C  *  C  *  *  K  F  S  L  E  I  P  S  V  A  S  I  H  F  S  L  S  Y  L  M  L  N  S  I  F  L  F  S  F  *  Y  Y  *  I  N </first_frame>
            <second_frame>  K  P  L  L  F  L  A  P  L  H  I  D  P  F  P  I  H  N  S  T  L  T  R  Q  R  T  K  S  T  Q  T  N  N  I  Q  F  S  L  E  :  V  S  S  *  K  E  L  N  Q  R  L  K  L  I  P   : S  L  V  *  G  R  R  L  L  R  V  R  R  R  R  T  L  L  R  I  Q  T  S  L  R  G  L  Q  V  P  S  S  F  S   : W  R  S  L  G  R  P  T  R  R  S  T  Q  T  T  N  L  L  L  L :   L  A  K  L  V  E  T  S  G  N  S  C  Q  M  K :   R  K  L  L  T  K  P  R  L  R  R  G  R  L  S  T  K  R  A  W  M  H  I  T  R  N  W :   L  L  V  M  L  M  M  S  L  T  S  P  S  L  R  Y  M  M  M  M  R  T  M  M  E  V  K  R :   R  M  M  I  K  Q  S  V  G  C  *  N  S  E  N  D  G  *  V  H  V  G  I  A  Q  S  F  L  D  K  *  M  P  S  F  F  T  F  F  V  *  F  L  F  F  E  G  L  V  W  T  E  R  *  N  S  D  D  L  P  *  K  L  K  *  F  M  *  F  L  Y  F  A  D  V  N  E  N  L  A  W  K  F  L  L  L  L  V  Y  I  S  V  Y  H  I  *  C  *  I  V  S  S  C  F  R  F  N  I  I  E  S   </second_frame>
            <third_frame>   S  P  C  Y  F  S  L  P  F  I  *  T  P  F  P  F  T  T  Q  H  L  Q  G  N  A  P  N  P  H  K  R  I  I  S  N  S  L  *  R :   F  H  H  E  R  S  *  I  K  G  *  S  *  Y  Q  :  A  W  C  K  E  E  G  Y  *  E  *  E  G  E  E  R  C  *  G  S  K  Q  A  *  E  A  S  K  C  L  L  R  F  H  :  G  G  V  *  E  D  L  Q  G  E  A  P  K  Q  Q  I  C  C  C   : C  W  Q  S  W  W  R  Q  V  E  T  V  V  R  *   : R  E  S  S  L  P  S  Q  G  *  E  E  E  G  *  V  P  K  E  H  G  C  I  *  Q  E  T   : G  C  W  *  C  *  *  *  V  *  Q  V  Q  V  *  G  T  *  *  *  *  G  R  *  W  K  *  R   : G  G  *  *  L  N  N  Q  *  A  V  E  I  Q  R  M  M  D  K  F  M  *  E  L  L  S  P  S  L  I  N  R  C  P  L  F  L  H  F  L  S  S  F  C  S  L  R  V  *  F  G  Q  K  G  E  I  Q  M  T  C  L  E  S  S  S  S  L  C  N  F  S  I  L  L  M  L  M  K  I  *  L  G  N  S  F  C  C  *  Y  T  F  Q  F  I  I  F  D  A  K  *  Y  L  L  V  F  V  L  I  L  L  N  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105710" stop="105692"/>
                    <exon start="105592" stop="105547"/>
                    <exon start="105415" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104544"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPILSRGFIMKGAKSKAKADTKLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKSMDAYNKKLAAGDADDESDKSKSEVHDDDEDDDGSEEEDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105404" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRLLRVRRRRTLLRIQTSLRGLQVPSSFSWRSLGRPTRRSTQTTNLLLLLAKLVETSGNSCQMKRKLLTKPRLRRGRLSTKRAWMHITRNWLLVMLMMSLTSPSLRYMMMMRTMMEVKRRMMIKQSVGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105809" e_stop="105692"/>
            <exon e_start="105592" e_stop="105547"/>
            <exon e_start="105415" e_stop="105314"/>
            <exon e_start="105227" e_stop="105170"/>
            <exon e_start="105069" e_stop="105025"/>
            <exon e_start="104910" e_stop="104830"/>
            <exon e_start="104738" e_stop="104655"/>
            <exon e_start="104558" e_stop="104311"/>
            <exon e_start="103257" e_stop="103226"/>
            <exon e_start="102444" e_stop="102428"/>
            <exon e_start="101998" e_stop="101993"/>
            <exon e_start="101841" e_stop="101819"/>
            <exon e_start="101260" e_stop="101238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.769" acc_prob="0.547" e_score="0.890"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.772" e_score="0.750"/>
          <exon-intron don_prob="0.294" acc_prob="0.385" e_score="0.471"/>
          <exon-intron don_prob="0.819" acc_prob="0.858" e_score="0.667"/>
          <exon-intron don_prob="0.098" acc_prob="0.264" e_score="0.565"/>
          <exon-only e_score="0.478"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.890">
            <gDNA_exon_boundary e_start="105809" e_stop="105692" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.769" acc_prob="0.547">
            <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105592" e_stop="105547" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105415" e_stop="105314" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.977">
            <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105227" e_stop="105170" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.674" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105069" e_stop="105025" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104910" e_stop="104830" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104738" e_stop="104655" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104558" e_stop="104311" e_length="248"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104310" i_stop="103258" i_length="1053"/>
          </intron>
          <exon e_serial="9" e_score="0.750">
            <gDNA_exon_boundary e_start="103257" e_stop="103226" e_length="32"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.772">
            <gDNA_intron_boundary i_start="103225" i_stop="102445" i_length="781"/>
          </intron>
          <exon e_serial="10" e_score="0.471">
            <gDNA_exon_boundary e_start="102444" e_stop="102428" e_length="17"/>
          </exon>
          <intron i_serial="10" don_prob="0.294" acc_prob="0.385">
            <gDNA_intron_boundary i_start="102427" i_stop="101999" i_length="429"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="101998" e_stop="101993" e_length="6"/>
          </exon>
          <intron i_serial="11" don_prob="0.819" acc_prob="0.858">
            <gDNA_intron_boundary i_start="101992" i_stop="101842" i_length="151"/>
          </intron>
          <exon e_serial="12" e_score="0.565">
            <gDNA_exon_boundary e_start="101841" e_stop="101819" e_length="23"/>
          </exon>
          <intron i_serial="12" don_prob="0.098" acc_prob="0.264">
            <gDNA_intron_boundary i_start="101818" i_stop="101261" i_length="558"/>
          </intron>
          <exon e_serial="13" e_score="0.478">
            <gDNA_exon_boundary e_start="101260" e_stop="101238" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105809" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105754" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105749" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105743" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105739" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105734" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105733" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105730" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105728" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105725" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105722" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105722" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105720" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105408" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105346" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105222" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104311"/>
              <exon start="103257" stop="103226"/>
              <exon start="102444" stop="102428"/>
              <exon start="101998" stop="101993"/>
              <exon start="101841" stop="101819"/>
              <exon start="101260" stop="101238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105207" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105204" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105182" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104896" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104893" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104862" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104709" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104533" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCCCTTGTTATTTCTCGCTCCCCTTCATATAGACCCCTTTCCCATTCACAACTCAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG : GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA : GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT : GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT : GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA : GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG : GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG : GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAAT : TATATAATAAATAAAAGAAAGAAGAAAAGAAA : CCAAACAAACTGGGAAT : AAAGAT : GGAAAACAGAAACTTAGCAGCAG : AGGTAGGAGAACCCAACCTTTTT</gDNA_template>
            <first_frame> K  A  L  V  I  S  R  S  P  S  Y  R  P  L  S  H  S  Q  L  N  T  Y  K  A  T  H  Q  I  H  T  N  E  *  Y  P  I  L  S  R   : G  F  I  M  K  G  A  K  S  K  A  K  A  D  T  K :   L  G  V  R  K  K  A  T  E  S  K  K  A  K  N  A  A  K  D  P  N  K  P  K  R  P  P  S  A  F  F  V  F  M :   E  E  F  R  K  T  Y  K  E  K  H  P  N  N  K  S  V  A  V  :  V  G  K  A  G  G  D  K  W  K  Q  L  S  D  E  :  E  K  A  P  Y  Q  A  K  A  E  K  R  K  A  E  Y  Q  K  S  M  D  A  Y  N  K  K  L  :  A  A  G  D  A  D  D  E  S  D  K  S  K  S  E  V  H  D  D  D  E  D  D  D  G  S  E  E  :  E  D  D  D  *  T  I  S  R  L  L  K  F  R  E  *  W  I  S  S  C  R  N  C  S  V  L  P  *  *  I  D  A  L  F  F  Y  I  F  C  L  V  F  V  L  *  G  F  S  L  D  R  K  V  K  F  R  *  L  A  L  K  A  Q  V  V  Y  V  I  S  L  F  C  *  C  *  *  K  F  S  L  E  I :   I  *  *  I  K  E  R  R  K  E   : T  K  Q  T  G  N  :  K  D  :  G  K  Q  K  L  S  S  R :   G  R  R  T  Q  P  F  </first_frame>
            <second_frame>  K  P  L  L  F  L  A  P  L  H  I  D  P  F  P  I  H  N  S  T  L  T  R  Q  R  T  K  S  T  Q  T  N  N  I  Q  F  S  L  E  :  V  S  S  *  K  E  L  N  Q  R  L  K  L  I  P   : S  L  V  *  G  R  R  L  L  R  V  R  R  R  R  T  L  L  R  I  Q  T  S  L  R  G  L  Q  V  P  S  S  F  S   : W  R  S  L  G  R  P  T  R  R  S  T  Q  T  T  N  L  L  L  L :   L  A  K  L  V  E  T  S  G  N  S  C  Q  M  K :   R  K  L  L  T  K  P  R  L  R  R  G  R  L  S  T  K  R  A  W  M  H  I  T  R  N  W :   L  L  V  M  L  M  M  S  L  T  S  P  S  L  R  Y  M  M  M  M  R  T  M  M  E  V  K  R :   R  M  M  I  K  Q  S  V  G  C  *  N  S  E  N  D  G  *  V  H  V  G  I  A  Q  S  F  L  D  K  *  M  P  S  F  F  T  F  F  V  *  F  L  F  F  E  G  L  V  W  T  E  R  *  N  S  D  D  L  P  *  K  L  K  *  F  M  *  F  L  Y  F  A  D  V  N  E  N  L  A  W  K   : L  Y  N  K  *  K  K  E  E  K  K  :  P  N  K  L  G  I :   K  M :   E  N  R  N  L  A  A   : E  V  G  E  P  N  L  F </second_frame>
            <third_frame>   S  P  C  Y  F  S  L  P  F  I  *  T  P  F  P  F  T  T  Q  H  L  Q  G  N  A  P  N  P  H  K  R  I  I  S  N  S  L  *  R :   F  H  H  E  R  S  *  I  K  G  *  S  *  Y  Q  :  A  W  C  K  E  E  G  Y  *  E  *  E  G  E  E  R  C  *  G  S  K  Q  A  *  E  A  S  K  C  L  L  R  F  H  :  G  G  V  *  E  D  L  Q  G  E  A  P  K  Q  Q  I  C  C  C   : C  W  Q  S  W  W  R  Q  V  E  T  V  V  R  *   : R  E  S  S  L  P  S  Q  G  *  E  E  E  G  *  V  P  K  E  H  G  C  I  *  Q  E  T   : G  C  W  *  C  *  *  *  V  *  Q  V  Q  V  *  G  T  *  *  *  *  G  R  *  W  K  *  R   : G  G  *  *  L  N  N  Q  *  A  V  E  I  Q  R  M  M  D  K  F  M  *  E  L  L  S  P  S  L  I  N  R  C  P  L  F  L  H  F  L  S  S  F  C  S  L  R  V  *  F  G  Q  K  G  E  I  Q  M  T  C  L  E  S  S  S  S  L  C  N  F  S  I  L  L  M  L  M  K  I  *  L  G  N  :  Y  I  I  N  K  R  K  K  K  R  N :   Q  T  N  W  E   : *  R   : W  K  T  E  T  *  Q  Q  :  R  *  E  N  P  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105710" stop="105692"/>
                    <exon start="105592" stop="105547"/>
                    <exon start="105415" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104544"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPILSRGFIMKGAKSKAKADTKLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKSMDAYNKKLAAGDADDESDKSKSEVHDDDEDDDGSEEEDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105404" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRLLRVRRRRTLLRIQTSLRGLQVPSSFSWRSLGRPTRRSTQTTNLLLLLAKLVETSGNSCQMKRKLLTKPRLRRGRLSTKRAWMHITRNWLLVMLMMSLTSPSLRYMMMMRTMMEVKRRMMIKQSVGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="105809" e_stop="105692"/>
            <exon e_start="105592" e_stop="105547"/>
            <exon e_start="105415" e_stop="105314"/>
            <exon e_start="105227" e_stop="105170"/>
            <exon e_start="105069" e_stop="105025"/>
            <exon e_start="104910" e_stop="104830"/>
            <exon e_start="104738" e_stop="104655"/>
            <exon e_start="104558" e_stop="104313"/>
            <exon e_start="103797" e_stop="103773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.769" acc_prob="0.547" e_score="0.890"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.323" e_score="1.000"/>
          <exon-only e_score="0.520"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.890">
            <gDNA_exon_boundary e_start="105809" e_stop="105692" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.769" acc_prob="0.547">
            <gDNA_intron_boundary i_start="105691" i_stop="105593" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105592" e_stop="105547" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105415" e_stop="105314" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.977">
            <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105227" e_stop="105170" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.674" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105069" e_stop="105025" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104910" e_stop="104830" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104738" e_stop="104655" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104558" e_stop="104313" e_length="246"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.323">
            <gDNA_intron_boundary i_start="104312" i_stop="103798" i_length="515"/>
          </intron>
          <exon e_serial="9" e_score="0.520">
            <gDNA_exon_boundary e_start="103797" e_stop="103773" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105809" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105754" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105749" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105743" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105741" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105739" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105734" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105733" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105730" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105725" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105722" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
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              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105722" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
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              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105720" stop="105692"/>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105408" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105346" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105207" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105204" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105182" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104896" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104893" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104862" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104709" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104549" stop="104313"/>
              <exon start="103797" stop="103773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104533" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCCCTTGTTATTTCTCGCTCCCCTTCATATAGACCCCTTTCCCATTCACAACTCAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG : GTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA : GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT : GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT : GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA : GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG : GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG : GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAA : GTGTAATCAAAACACAACTTCAATA</gDNA_template>
            <first_frame> K  A  L  V  I  S  R  S  P  S  Y  R  P  L  S  H  S  Q  L  N  T  Y  K  A  T  H  Q  I  H  T  N  E  *  Y  P  I  L  S  R   : G  F  I  M  K  G  A  K  S  K  A  K  A  D  T  K :   L  G  V  R  K  K  A  T  E  S  K  K  A  K  N  A  A  K  D  P  N  K  P  K  R  P  P  S  A  F  F  V  F  M :   E  E  F  R  K  T  Y  K  E  K  H  P  N  N  K  S  V  A  V  :  V  G  K  A  G  G  D  K  W  K  Q  L  S  D  E  :  E  K  A  P  Y  Q  A  K  A  E  K  R  K  A  E  Y  Q  K  S  M  D  A  Y  N  K  K  L  :  A  A  G  D  A  D  D  E  S  D  K  S  K  S  E  V  H  D  D  D  E  D  D  D  G  S  E  E  :  E  D  D  D  *  T  I  S  R  L  L  K  F  R  E  *  W  I  S  S  C  R  N  C  S  V  L  P  *  *  I  D  A  L  F  F  Y  I  F  C  L  V  F  V  L  *  G  F  S  L  D  R  K  V  K  F  R  *  L  A  L  K  A  Q  V  V  Y  V  I  S  L  F  C  *  C  *  *  K  F  S  L  E  :  V  *  S  K  H  N  F  N  </first_frame>
            <second_frame>  K  P  L  L  F  L  A  P  L  H  I  D  P  F  P  I  H  N  S  T  L  T  R  Q  R  T  K  S  T  Q  T  N  N  I  Q  F  S  L  E  :  V  S  S  *  K  E  L  N  Q  R  L  K  L  I  P   : S  L  V  *  G  R  R  L  L  R  V  R  R  R  R  T  L  L  R  I  Q  T  S  L  R  G  L  Q  V  P  S  S  F  S   : W  R  S  L  G  R  P  T  R  R  S  T  Q  T  T  N  L  L  L  L :   L  A  K  L  V  E  T  S  G  N  S  C  Q  M  K :   R  K  L  L  T  K  P  R  L  R  R  G  R  L  S  T  K  R  A  W  M  H  I  T  R  N  W :   L  L  V  M  L  M  M  S  L  T  S  P  S  L  R  Y  M  M  M  M  R  T  M  M  E  V  K  R :   R  M  M  I  K  Q  S  V  G  C  *  N  S  E  N  D  G  *  V  H  V  G  I  A  Q  S  F  L  D  K  *  M  P  S  F  F  T  F  F  V  *  F  L  F  F  E  G  L  V  W  T  E  R  *  N  S  D  D  L  P  *  K  L  K  *  F  M  *  F  L  Y  F  A  D  V  N  E  N  L  A  W  K :   C  N  Q  N  T  T  S  I </second_frame>
            <third_frame>   S  P  C  Y  F  S  L  P  F  I  *  T  P  F  P  F  T  T  Q  H  L  Q  G  N  A  P  N  P  H  K  R  I  I  S  N  S  L  *  R :   F  H  H  E  R  S  *  I  K  G  *  S  *  Y  Q  :  A  W  C  K  E  E  G  Y  *  E  *  E  G  E  E  R  C  *  G  S  K  Q  A  *  E  A  S  K  C  L  L  R  F  H  :  G  G  V  *  E  D  L  Q  G  E  A  P  K  Q  Q  I  C  C  C   : C  W  Q  S  W  W  R  Q  V  E  T  V  V  R  *   : R  E  S  S  L  P  S  Q  G  *  E  E  E  G  *  V  P  K  E  H  G  C  I  *  Q  E  T   : G  C  W  *  C  *  *  *  V  *  Q  V  Q  V  *  G  T  *  *  *  *  G  R  *  W  K  *  R   : G  G  *  *  L  N  N  Q  *  A  V  E  I  Q  R  M  M  D  K  F  M  *  E  L  L  S  P  S  L  I  N  R  C  P  L  F  L  H  F  L  S  S  F  C  S  L  R  V  *  F  G  Q  K  G  E  I  Q  M  T  C  L  E  S  S  S  S  L  C  N  F  S  I  L  L  M  L  M  K  I  *  L  G   : S  V  I  K  T  Q  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105710" stop="105692"/>
                    <exon start="105592" stop="105547"/>
                    <exon start="105415" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104544"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPILSRGFIMKGAKSKAKADTKLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKSMDAYNKKLAAGDADDESDKSKSEVHDDDEDDDGSEEEDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105404" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRLLRVRRRRTLLRIQTSLRGLQVPSSFSWRSLGRPTRRSTQTTNLLLLLAKLVETSGNSCQMKRKLLTKPRLRRGRLSTKRAWMHITRNWLLVMLMMSLTSPSLRYMMMMRTMMEVKRRMMIKQSVGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="105702" e_stop="105547"/>
            <exon e_start="105415" e_stop="105314"/>
            <exon e_start="105227" e_stop="105170"/>
            <exon e_start="105069" e_stop="105025"/>
            <exon e_start="104910" e_stop="104830"/>
            <exon e_start="104738" e_stop="104655"/>
            <exon e_start="104558" e_stop="104223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.955"/>
          <exon-intron don_prob="0.924" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="105702" e_stop="105547" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105415" e_stop="105314" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.977">
            <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105227" e_stop="105170" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.674" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105069" e_stop="105025" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104910" e_stop="104830" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104738" e_stop="104655" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="104558" e_stop="104223" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105702" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105702" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105594" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105408" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105346" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105207" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105204" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105202" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105182" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104896" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104893" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104862" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104709" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104557" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104533" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104504" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA : GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT : GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT : GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA : GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG : GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG : GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAAC</gDNA_template>
            <first_frame> S  L  *  R  *  T  L  R  R  F  T  H  Y  L  G  R  V  F  T  F  F  R  R  F  I  T  D  S  Q  R  F  S  C  F  R  C  R  F  H  H  E  R  S  *  I  K  G  *  S  *  Y  Q  :  A  W  C  K  E  E  G  Y  *  E  *  E  G  E  E  R  C  *  G  S  K  Q  A  *  E  A  S  K  C  L  L  R  F  H  :  G  G  V  *  E  D  L  Q  G  E  A  P  K  Q  Q  I  C  C  C   : C  W  Q  S  W  W  R  Q  V  E  T  V  V  R  *   : R  E  S  S  L  P  S  Q  G  *  E  E  E  G  *  V  P  K  E  H  G  C  I  *  Q  E  T   : G  C  W  *  C  *  *  *  V  *  Q  V  Q  V  *  G  T  *  *  *  *  G  R  *  W  K  *  R   : G  G  *  *  L  N  N  Q  *  A  V  E  I  Q  R  M  M  D  K  F  M  *  E  L  L  S  P  S  L  I  N  R  C  P  L  F  L  H  F  L  S  S  F  C  S  L  R  V  *  F  G  Q  K  G  E  I  Q  M  T  C  L  E  S  S  S  S  L  C  N  F  S  I  L  L  M  L  M  K  I  *  L  G  N  S  F  C  C  *  Y  T  F  Q  F  I  I  F  D  A  K  *  Y  L  L  V  F  V  L  I  L  L  N  Q  </first_frame>
            <second_frame>  L  S  R  G  K  P  Y  G  A  L  L  T  T  S  A  E  F  S  P  F  S  A  G  S  S  P  I  L  N  G  F  R  V  F  V  A  G  F  I  M  K  G  A  K  S  K  A  K  A  D  T  K :   L  G  V  R  K  K  A  T  E  S  K  K  A  K  N  A  A  K  D  P  N  K  P  K  R  P  P  S  A  F  F  V  F  M :   E  E  F  R  K  T  Y  K  E  K  H  P  N  N  K  S  V  A  V  :  V  G  K  A  G  G  D  K  W  K  Q  L  S  D  E  :  E  K  A  P  Y  Q  A  K  A  E  K  R  K  A  E  Y  Q  K  S  M  D  A  Y  N  K  K  L  :  A  A  G  D  A  D  D  E  S  D  K  S  K  S  E  V  H  D  D  D  E  D  D  D  G  S  E  E  :  E  D  D  D  *  T  I  S  R  L  L  K  F  R  E  *  W  I  S  S  C  R  N  C  S  V  L  P  *  *  I  D  A  L  F  F  Y  I  F  C  L  V  F  V  L  *  G  F  S  L  D  R  K  V  K  F  R  *  L  A  L  K  A  Q  V  V  Y  V  I  S  L  F  C  *  C  *  *  K  F  S  L  E  I  P  S  V  A  S  I  H  F  S  L  S  Y  L  M  L  N  S  I  F  L  F  S  F  *  Y  Y  *  I  N </second_frame>
            <third_frame>   S  L  E  V  N  P  T  A  L  Y  S  L  P  R  P  S  F  H  L  F  P  P  V  H  H  R  F  S  T  V  F  V  F  S  L  Q  V  S  S  *  K  E  L  N  Q  R  L  K  L  I  P   : S  L  V  *  G  R  R  L  L  R  V  R  R  R  R  T  L  L  R  I  Q  T  S  L  R  G  L  Q  V  P  S  S  F  S   : W  R  S  L  G  R  P  T  R  R  S  T  Q  T  T  N  L  L  L  L :   L  A  K  L  V  E  T  S  G  N  S  C  Q  M  K :   R  K  L  L  T  K  P  R  L  R  R  G  R  L  S  T  K  R  A  W  M  H  I  T  R  N  W :   L  L  V  M  L  M  M  S  L  T  S  P  S  L  R  Y  M  M  M  M  R  T  M  M  E  V  K  R :   R  M  M  I  K  Q  S  V  G  C  *  N  S  E  N  D  G  *  V  H  V  G  I  A  Q  S  F  L  D  K  *  M  P  S  F  F  T  F  F  V  *  F  L  F  F  E  G  L  V  W  T  E  R  *  N  S  D  D  L  P  *  K  L  K  *  F  M  *  F  L  Y  F  A  D  V  N  E  N  L  A  W  K  F  L  L  L  L  V  Y  I  S  V  Y  H  I  *  C  *  I  V  S  S  C  F  R  F  N  I  I  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105701" stop="105547"/>
                    <exon start="105415" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104544"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSRGKPYGALLTTSAEFSPFSAGSSPILNGFRVFVAGFIMKGAKSKAKADTKLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKSMDAYNKKLAAGDADDESDKSKSEVHDDDEDDDGSEEEDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="105766" e_stop="105692"/>
            <exon e_start="105601" e_stop="105547"/>
            <exon e_start="105415" e_stop="105314"/>
            <exon e_start="105227" e_stop="105170"/>
            <exon e_start="105069" e_stop="105025"/>
            <exon e_start="104910" e_stop="104830"/>
            <exon e_start="104738" e_stop="104655"/>
            <exon e_start="104558" e_stop="104223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.769" acc_prob="0.000" e_score="0.827"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.827">
            <gDNA_exon_boundary e_start="105766" e_stop="105692" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.769" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105691" i_stop="105602" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105601" e_stop="105547" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105546" i_stop="105416" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105415" e_stop="105314" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.977">
            <gDNA_intron_boundary i_start="105313" i_stop="105228" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105227" e_stop="105170" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.674" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105169" i_stop="105070" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105069" e_stop="105025" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105024" i_stop="104911" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104910" e_stop="104830" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104829" i_stop="104739" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104738" e_stop="104655" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104654" i_stop="104559" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.973">
            <gDNA_exon_boundary e_start="104558" e_stop="104223" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105766" stop="105692"/>
              <exon start="105601" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105594" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="105547"/>
              <exon start="105415" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105408" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105346" stop="105314"/>
              <exon start="105227" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105207" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105204" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105202" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105182" stop="105170"/>
              <exon start="105069" stop="105025"/>
              <exon start="104910" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104896" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104893" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104867" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104862" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104830"/>
              <exon start="104738" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104709" stop="104655"/>
              <exon start="104558" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104557" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104533" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104504" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCATTCACAACTCAACACTTACAAGGCAACGCACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAG : TCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAA : GCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCAT : GGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTT : GTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAA : GAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTG : GCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAG : GAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAAC</gDNA_template>
            <first_frame> P  I  H  N  S  T  L  T  R  Q  R  T  K  S  T  Q  T  N  N  I  Q  F  S  L  E  :  S  L  Q  V  S  S  *  K  E  L  N  Q  R  L  K  L  I  P   : S  L  V  *  G  R  R  L  L  R  V  R  R  R  R  T  L  L  R  I  Q  T  S  L  R  G  L  Q  V  P  S  S  F  S   : W  R  S  L  G  R  P  T  R  R  S  T  Q  T  T  N  L  L  L  L :   L  A  K  L  V  E  T  S  G  N  S  C  Q  M  K :   R  K  L  L  T  K  P  R  L  R  R  G  R  L  S  T  K  R  A  W  M  H  I  T  R  N  W :   L  L  V  M  L  M  M  S  L  T  S  P  S  L  R  Y  M  M  M  M  R  T  M  M  E  V  K  R :   R  M  M  I  K  Q  S  V  G  C  *  N  S  E  N  D  G  *  V  H  V  G  I  A  Q  S  F  L  D  K  *  M  P  S  F  F  T  F  F  V  *  F  L  F  F  E  G  L  V  W  T  E  R  *  N  S  D  D  L  P  *  K  L  K  *  F  M  *  F  L  Y  F  A  D  V  N  E  N  L  A  W  K  F  L  L  L  L  V  Y  I  S  V  Y  H  I  *  C  *  I  V  S  S  C  F  R  F  N  I  I  E  S   </first_frame>
            <second_frame>  P  F  T  T  Q  H  L  Q  G  N  A  P  N  P  H  K  R  I  I  S  N  S  L  *  S :   R  C  R  F  H  H  E  R  S  *  I  K  G  *  S  *  Y  Q  :  A  W  C  K  E  E  G  Y  *  E  *  E  G  E  E  R  C  *  G  S  K  Q  A  *  E  A  S  K  C  L  L  R  F  H  :  G  G  V  *  E  D  L  Q  G  E  A  P  K  Q  Q  I  C  C  C   : C  W  Q  S  W  W  R  Q  V  E  T  V  V  R  *   : R  E  S  S  L  P  S  Q  G  *  E  E  E  G  *  V  P  K  E  H  G  C  I  *  Q  E  T   : G  C  W  *  C  *  *  *  V  *  Q  V  Q  V  *  G  T  *  *  *  *  G  R  *  W  K  *  R   : G  G  *  *  L  N  N  Q  *  A  V  E  I  Q  R  M  M  D  K  F  M  *  E  L  L  S  P  S  L  I  N  R  C  P  L  F  L  H  F  L  S  S  F  C  S  L  R  V  *  F  G  Q  K  G  E  I  Q  M  T  C  L  E  S  S  S  S  L  C  N  F  S  I  L  L  M  L  M  K  I  *  L  G  N  S  F  C  C  *  Y  T  F  Q  F  I  I  F  D  A  K  *  Y  L  L  V  F  V  L  I  L  L  N  Q  </second_frame>
            <third_frame>   H  S  Q  L  N  T  Y  K  A  T  H  Q  I  H  T  N  E  *  Y  P  I  L  S  R   : V  V  A  G  F  I  M  K  G  A  K  S  K  A  K  A  D  T  K :   L  G  V  R  K  K  A  T  E  S  K  K  A  K  N  A  A  K  D  P  N  K  P  K  R  P  P  S  A  F  F  V  F  M :   E  E  F  R  K  T  Y  K  E  K  H  P  N  N  K  S  V  A  V  :  V  G  K  A  G  G  D  K  W  K  Q  L  S  D  E  :  E  K  A  P  Y  Q  A  K  A  E  K  R  K  A  E  Y  Q  K  S  M  D  A  Y  N  K  K  L  :  A  A  G  D  A  D  D  E  S  D  K  S  K  S  E  V  H  D  D  D  E  D  D  D  G  S  E  E  :  E  D  D  D  *  T  I  S  R  L  L  K  F  R  E  *  W  I  S  S  C  R  N  C  S  V  L  P  *  *  I  D  A  L  F  F  Y  I  F  C  L  V  F  V  L  *  G  F  S  L  D  R  K  V  K  F  R  *  L  A  L  K  A  Q  V  V  Y  V  I  S  L  F  C  *  C  *  *  K  F  S  L  E  I  P  S  V  A  S  I  H  F  S  L  S  Y  L  M  L  N  S  I  F  L  F  S  F  *  Y  Y  *  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105710" stop="105692"/>
                    <exon start="105601" stop="105547"/>
                    <exon start="105415" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPILSRVVAGFIMKGAKSKAKADTKLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKSMDAYNKKLAAGDADDESDKSKSEVHDDDEDDDGSEEEDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105404" stop="105314"/>
                    <exon start="105227" stop="105170"/>
                    <exon start="105069" stop="105025"/>
                    <exon start="104910" stop="104830"/>
                    <exon start="104738" stop="104655"/>
                    <exon start="104558" stop="104525"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRLLRVRRRRTLLRIQTSLRGLQVPSSFSWRSLGRPTRRSTQTTNLLLLLAKLVETSGNSCQMKRKLLTKPRLRRGRLSTKRAWMHITRNWLLVMLMMSLTSPSLRYMMMMRTMMEVKRRMMIKQSVGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="105733" e_stop="104223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="105733" e_stop="104223" e_length="1511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105733" stop="104933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="105303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105702" stop="105053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105702" stop="105279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105118" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104557" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="104313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104533" stop="104331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104504" stop="104223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAATCCACACAAACGAATAATATCCAATTCTCTCTAGAGGTAAACCCTACGGCGCTTTACTCACTACCTCGGCCGAGTTTTCACCTTTTTCCGCCGGTTCATCACCGATTCTCAACGGTTTTCGTGTTTTCGTTGCAGGTTTCATCATGAAAGGAGCTAAATCAAAGGCTAAAGCTGATACCAAGTGAGTTTGACTTTGTTTTAGTTGTGGTTTTGATTTGATTCGTGTTTACGGTTTCAGATCTAGGTTTTTGTGGTGTTTCTATGTGAGAATTTTTTCGATTCCTGTTGTTAAAGTTTGGTGAATTGTTATAGGCTTGGTGTAAGGAAGAAGGCTACTGAGAGTAAGAAGGCGAAGAACGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGTATGCATCTAATCGTTGTGTGTTTTGTGATTTTTATGTGTTTAAGGCCGATATACTAACGGTGTTCATTCCCTTTTTGAATGAAGGGAGGAGTTTAGGAAGACCTACAAGGAGAAGCACCCAAACAACAAATCTGTTGCTGTTGTGAGTAGTTTACCCTAAGTAGATCCTTATTTTCAGCAGCATCTGTCGGTTTTTGTTTTTTGACCTTTTGCTTAATTGATCTTTGTTCACTAAATTGTAGGTTGGCAAAGCTGGTGGAGACAAGTGGAAACAGTTGTCAGATGAAGTGAGTATAAGCCTCAAATCATATACTGGAAAATTCTATTCGAGTTGACTTTTTGACTTTATGCGTTTTGTCTTCAAACGAACTATGTACTGAAGTTCTGCTTTGTTCTTTTAGGAGAAAGCTCCTTACCAAGCCAAGGCTGAGAAGAGGAAGGCTGAGTACCAAAAGAGCATGGATGCATATAACAAGAAACTGGTAAATACTATATTCTCACTGATGTAACCTTAGTGTGTTCATGGTCTGCTTTTTCCATTTCTAATTTTTAATTTGATCCGATGCAACACAGGCTGCTGGTGATGCTGATGATGAGTCTGACAAGTCCAAGTCTGAGGTACATGATGATGATGAGGACGATGATGGAAGTGAAGAGGTTCGTATTTTTACGAGTCTAATTATCGTCTATTAGTTTGTTGATTTTTTGTGATTTGTGAGTTCTTATACATGATTTTTATTCATGTTTTCACAGGAGGATGATGATTAAACAATCAGTAGGCTGTTGAAATTCAGAGAATGATGGATAAGTTCATGTAGGAATTGCTCAGTCCTTCCTTGATAAATAGATGCCCTCTTTTTTTACATTTTTTGTCTAGTTTTTGTTCTTTGAGGGTTTAGTTTGGACAGAAAGGTGAAATTCAGATGACTTGCCTTGAAAGCTCAAGTAGTTTATGTAATTTCTCTATTTTGCTGATGTTAATGAAAATTTAGCTTGGAAATTCCTTCTGTTGCTAGTATACATTTCAGTTTATCATATTTGATGCTAAATAGTATCTTCTTGTTTTCGTTTTAATATTATTGAATCAAC</gDNA_template>
            <first_frame> T  K  S  T  Q  T  N  N  I  Q  F  S  L  E  V  N  P  T  A  L  Y  S  L  P  R  P  S  F  H  L  F  P  P  V  H  H  R  F  S  T  V  F  V  F  S  L  Q  V  S  S  *  K  E  L  N  Q  R  L  K  L  I  P  S  E  F  D  F  V  L  V  V  V  L  I  *  F  V  F  T  V  S  D  L  G  F  C  G  V  S  M  *  E  F  F  R  F  L  L  L  K  F  G  E  L  L  *  A  W  C  K  E  E  G  Y  *  E  *  E  G  E  E  R  C  *  G  S  K  Q  A  *  E  A  S  K  C  L  L  R  F  H  V  C  I  *  S  L  C  V  L  *  F  L  C  V  *  G  R  Y  T  N  G  V  H  S  L  F  E  *  R  E  E  F  R  K  T  Y  K  E  K  H  P  N  N  K  S  V  A  V  V  S  S  L  P  *  V  D  P  Y  F  Q  Q  H  L  S  V  F  V  F  *  P  F  A  *  L  I  F  V  H  *  I  V  G  W  Q  S  W  W  R  Q  V  E  T  V  V  R  *  S  E  Y  K  P  Q  I  I  Y  W  K  I  L  F  E  L  T  F  *  L  Y  A  F  C  L  Q  T  N  Y  V  L  K  F  C  F  V  L  L  G  E  S  S  L  P  S  Q  G  *  E  E  E  G  *  V  P  K  E  H  G  C  I  *  Q  E  T  G  K  Y  Y  I  L  T  D  V  T  L  V  C  S  W  S  A  F  S  I  S  N  F  *  F  D  P  M  Q  H  R  L  L  V  M  L  M  M  S  L  T  S  P  S  L  R  Y  M  M  M  M  R  T  M  M  E  V  K  R  F  V  F  L  R  V  *  L  S  S  I  S  L  L  I  F  C  D  L  *  V  L  I  H  D  F  Y  S  C  F  H  R  R  M  M  I  K  Q  S  V  G  C  *  N  S  E  N  D  G  *  V  H  V  G  I  A  Q  S  F  L  D  K  *  M  P  S  F  F  T  F  F  V  *  F  L  F  F  E  G  L  V  W  T  E  R  *  N  S  D  D  L  P  *  K  L  K  *  F  M  *  F  L  Y  F  A  D  V  N  E  N  L  A  W  K  F  L  L  L  L  V  Y  I  S  V  Y  H  I  *  C  *  I  V  S  S  C  F  R  F  N  I  I  E  S   </first_frame>
            <second_frame>  P  N  P  H  K  R  I  I  S  N  S  L  *  R  *  T  L  R  R  F  T  H  Y  L  G  R  V  F  T  F  F  R  R  F  I  T  D  S  Q  R  F  S  C  F  R  C  R  F  H  H  E  R  S  *  I  K  G  *  S  *  Y  Q  V  S  L  T  L  F  *  L  W  F  *  F  D  S  C  L  R  F  Q  I  *  V  F  V  V  F  L  C  E  N  F  F  D  S  C  C  *  S  L  V  N  C  Y  R  L  G  V  R  K  K  A  T  E  S  K  K  A  K  N  A  A  K  D  P  N  K  P  K  R  P  P  S  A  F  F  V  F  M  Y  A  S  N  R  C  V  F  C  D  F  Y  V  F  K  A  D  I  L  T  V  F  I  P  F  L  N  E  G  R  S  L  G  R  P  T  R  R  S  T  Q  T  T  N  L  L  L  L  *  V  V  Y  P  K  *  I  L  I  F  S  S  I  C  R  F  L  F  F  D  L  L  L  N  *  S  L  F  T  K  L  *  V  G  K  A  G  G  D  K  W  K  Q  L  S  D  E  V  S  I  S  L  K  S  Y  T  G  K  F  Y  S  S  *  L  F  D  F  M  R  F  V  F  K  R  T  M  Y  *  S  S  A  L  F  F  *  E  K  A  P  Y  Q  A  K  A  E  K  R  K  A  E  Y  Q  K  S  M  D  A  Y  N  K  K  L  V  N  T  I  F  S  L  M  *  P  *  C  V  H  G  L  L  F  P  F  L  I  F  N  L  I  R  C  N  T  G  C  W  *  C  *  *  *  V  *  Q  V  Q  V  *  G  T  *  *  *  *  G  R  *  W  K  *  R  G  S  Y  F  Y  E  S  N  Y  R  L  L  V  C  *  F  F  V  I  C  E  F  L  Y  M  I  F  I  H  V  F  T  G  G  *  *  L  N  N  Q  *  A  V  E  I  Q  R  M  M  D  K  F  M  *  E  L  L  S  P  S  L  I  N  R  C  P  L  F  L  H  F  L  S  S  F  C  S  L  R  V  *  F  G  Q  K  G  E  I  Q  M  T  C  L  E  S  S  S  S  L  C  N  F  S  I  L  L  M  L  M  K  I  *  L  G  N  S  F  C  C  *  Y  T  F  Q  F  I  I  F  D  A  K  *  Y  L  L  V  F  V  L  I  L  L  N  Q  </second_frame>
            <third_frame>   Q  I  H  T  N  E  *  Y  P  I  L  S  R  G  K  P  Y  G  A  L  L  T  T  S  A  E  F  S  P  F  S  A  G  S  S  P  I  L  N  G  F  R  V  F  V  A  G  F  I  M  K  G  A  K  S  K  A  K  A  D  T  K  *  V  *  L  C  F  S  C  G  F  D  L  I  R  V  Y  G  F  R  S  R  F  L  W  C  F  Y  V  R  I  F  S  I  P  V  V  K  V  W  *  I  V  I  G  L  V  *  G  R  R  L  L  R  V  R  R  R  R  T  L  L  R  I  Q  T  S  L  R  G  L  Q  V  P  S  S  F  S  C  M  H  L  I  V  V  C  F  V  I  F  M  C  L  R  P  I  Y  *  R  C  S  F  P  F  *  M  K  G  G  V  *  E  D  L  Q  G  E  A  P  K  Q  Q  I  C  C  C  C  E  *  F  T  L  S  R  S  L  F  S  A  A  S  V  G  F  C  F  L  T  F  C  L  I  D  L  C  S  L  N  C  R  L  A  K  L  V  E  T  S  G  N  S  C  Q  M  K  *  V  *  A  S  N  H  I  L  E  N  S  I  R  V  D  F  L  T  L  C  V  L  S  S  N  E  L  C  T  E  V  L  L  C  S  F  R  R  K  L  L  T  K  P  R  L  R  R  G  R  L  S  T  K  R  A  W  M  H  I  T  R  N  W  *  I  L  Y  S  H  *  C  N  L  S  V  F  M  V  C  F  F  H  F  *  F  L  I  *  S  D  A  T  Q  A  A  G  D  A  D  D  E  S  D  K  S  K  S  E  V  H  D  D  D  E  D  D  D  G  S  E  E  V  R  I  F  T  S  L  I  I  V  Y  *  F  V  D  F  L  *  F  V  S  S  Y  T  *  F  L  F  M  F  S  Q  E  D  D  D  *  T  I  S  R  L  L  K  F  R  E  *  W  I  S  S  C  R  N  C  S  V  L  P  *  *  I  D  A  L  F  F  Y  I  F  C  L  V  F  V  L  *  G  F  S  L  D  R  K  V  K  F  R  *  L  A  L  K  A  Q  V  V  Y  V  I  S  L  F  C  *  C  *  *  K  F  S  L  E  I  P  S  V  A  S  I  H  F  S  L  S  Y  L  M  L  N  S  I  F  L  F  S  F  *  Y  Y  *  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105435" stop="105166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVNCYRLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMYASNRCVFCDFYVFKADILTVFIPFLNEGRSLGRPTRRSTQTTNLLLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="101881" PGL_stop="104539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101881" e_stop="101949"/>
            <exon e_start="102291" e_stop="102409"/>
            <exon e_start="102755" e_stop="102814"/>
            <exon e_start="103005" e_stop="103324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101881" e_stop="101949" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101950" i_stop="102290" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102291" e_stop="102409" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102410" i_stop="102754" i_length="345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102755" e_stop="102814" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.936">
            <gDNA_intron_boundary i_start="102815" i_stop="103004" i_length="190"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="103005" e_stop="103324" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101881" stop="101949"/>
              <exon start="102291" stop="102409"/>
              <exon start="102755" stop="102814"/>
              <exon start="103005" stop="103324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251903" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGGGAAATCCAATGGTTGCAGCACTAAACAAGCAGAACCTTACAAATACATTTCAGGCTCTGAAAG : GAAAGTTTATGCCCATGAAGGTCAAAAACGATAAAGCCCCGATAAATGATGCACCACAAGATGACAAGGCAGATACTGTTGGTCAAATTAAGAAAAGATATGGGTATACTGCTTCAGCT : GAACCCAGTGCTACAGAGGCAGCAAAGTCAAAGCTCAGTGAAAATCTGAAGAAGTTGCAG : GGCATCAACATTAGAAGTGCTGAGATGCAGGACCAAGCCAAGTCATTTTCTTCCATGGCTAAAGAGGTGTTGCGATTTTCTGGAAATGACAAAGCAAATTCGTGATTGCTTCACTCCACACAAAGATGTTTTGCTGGAAATGTATAGTAAATTACAATTCTGAGTATTTTTCTTGATGTTTTACCTATTTATTCATTTCAATGAGACTTGGAGTTGGAGATTTTCTTTTCTTCTTTCTTTTATTTATTATATATATATGTAAATGGCACACAACATTTGATATGATTCTTTCACAGAGACGCTAGTTTTTAGGGGTAGAC</gDNA_template>
            <first_frame> R  R  E  I  Q  W  L  Q  H  *  T  S  R  T  L  Q  I  H  F  R  L  *  K  :  E  S  L  C  P  *  R  S  K  T  I  K  P  R  *  M  M  H  H  K  M  T  R  Q  I  L  L  V  K  L  R  K  D  M  G  I  L  L  Q  L :   N  P  V  L  Q  R  Q  Q  S  Q  S  S  V  K  I  *  R  S  C  R :   A  S  T  L  E  V  L  R  C  R  T  K  P  S  H  F  L  P  W  L  K  R  C  C  D  F  L  E  M  T  K  Q  I  R  D  C  F  T  P  H  K  D  V  L  L  E  M  Y  S  K  L  Q  F  *  V  F  F  L  M  F  Y  L  F  I  H  F  N  E  T  W  S  W  R  F  S  F  L  L  S  F  I  Y  Y  I  Y  M  *  M  A  H  N  I  *  Y  D  S  F  T  E  T  L  V  F  R  G  R  </first_frame>
            <second_frame>  E  G  K  S  N  G  C  S  T  K  Q  A  E  P  Y  K  Y  I  S  G  S  E  R :   K  V  Y  A  H  E  G  Q  K  R  *  S  P  D  K  *  C  T  T  R  *  Q  G  R  Y  C  W  S  N  *  E  K  I  W  V  Y  C  F  S   : *  T  Q  C  Y  R  G  S  K  V  K  A  Q  *  K  S  E  E  V  A   : G  H  Q  H  *  K  C  *  D  A  G  P  S  Q  V  I  F  F  H  G  *  R  G  V  A  I  F  W  K  *  Q  S  K  F  V  I  A  S  L  H  T  K  M  F  C  W  K  C  I  V  N  Y  N  S  E  Y  F  S  *  C  F  T  Y  L  F  I  S  M  R  L  G  V  G  D  F  L  F  F  F  L  L  F  I  I  Y  I  C  K  W  H  T  T  F  D  M  I  L  S  Q  R  R  *  F  L  G  V  D </second_frame>
            <third_frame>   K  G  N  P  M  V  A  A  L  N  K  Q  N  L  T  N  T  F  Q  A  L  K   : G  K  F  M  P  M  K  V  K  N  D  K  A  P  I  N  D  A  P  Q  D  D  K  A  D  T  V  G  Q  I  K  K  R  Y  G  Y  T  A  S  A  :  E  P  S  A  T  E  A  A  K  S  K  L  S  E  N  L  K  K  L  Q  :  G  I  N  I  R  S  A  E  M  Q  D  Q  A  K  S  F  S  S  M  A  K  E  V  L  R  F  S  G  N  D  K  A  N  S  *  L  L  H  S  T  Q  R  C  F  A  G  N  V  *  *  I  T  I  L  S  I  F  L  D  V  L  P  I  Y  S  F  Q  *  D  L  E  L  E  I  F  F  S  S  F  F  Y  L  L  Y  I  Y  V  N  G  T  Q  H  L  I  *  F  F  H  R  D  A  S  F  *  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0026H18.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101883" stop="101949"/>
                    <exon start="102291" stop="102409"/>
                    <exon start="102755" stop="102814"/>
                    <exon start="103005" stop="103109"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNPMVAALNKQNLTNTFQALKGKFMPMKVKNDKAPINDAPQDDKADTVGQIKKRYGYTASAEPSATEAAKSKLSENLKKLQGINIRSAEMQDQAKSFSSMAKEVLRFSGNDKANS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103225" e_stop="103262"/>
            <exon e_start="104313" e_stop="104539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.711"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.711">
            <gDNA_exon_boundary e_start="103225" e_stop="103262" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103263" i_stop="104312" i_length="1050"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="104313" e_stop="104539" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103225" stop="103262"/>
              <exon start="104313" stop="104539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234480" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTTTCTTCTTTCTTTTATTTATTATATATATAT : TTCCAAGCTAAATTTTCATTAACATCAGCAAAATAGAGAAATTACATAAACTACTTGAGCTTTCAAGGCAAGTCATCTGAATTTCACCTTTCTGTCCAAACTAAACCCTCAAAGAACAAAAACTAGACAAAAAATGTAAAAAAAGAGGGCATCTATTTATCAAGGAAGGACTGAGCAATTCCTACATGAACTTATCCATCATTCTCTGAATTTCAACAGCCTACTGA</gDNA_template>
            <first_frame> F  S  F  L  L  S  F  I  Y  Y  I  Y  I :   S  K  L  N  F  H  *  H  Q  Q  N  R  E  I  T  *  T  T  *  A  F  K  A  S  H  L  N  F  T  F  L  S  K  L  N  P  Q  R  T  K  T  R  Q  K  M  *  K  K  R  A  S  I  Y  Q  G  R  T  E  Q  F  L  H  E  L  I  H  H  S  L  N  F  N  S  L  L  </first_frame>
            <second_frame>  F  L  F  F  F  L  L  F  I  I  Y  I   : F  P  S  *  I  F  I  N  I  S  K  I  E  K  L  H  K  L  L  E  L  S  R  Q  V  I  *  I  S  P  F  C  P  N  *  T  L  K  E  Q  K  L  D  K  K  C  K  K  R  G  H  L  F  I  K  E  G  L  S  N  S  Y  M  N  L  S  I  I  L  *  I  S  T  A  Y  * </second_frame>
            <third_frame>   F  F  S  S  F  F  Y  L  L  Y  I  Y  :  F  Q  A  K  F  S  L  T  S  A  K  *  R  N  Y  I  N  Y  L  S  F  Q  G  K  S  S  E  F  H  L  S  V  Q  T  K  P  S  K  N  K  N  *  T  K  N  V  K  K  E  G  I  Y  L  S  R  K  D  *  A  I  P  T  *  T  Y  P  S  F  S  E  F  Q  Q  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0026H18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 240 chains have been computed
$ 
$ memory statistics:
$ 581888 bytes spliced alignments in total
$ 112 spliced alignments have been stored
$ 5195 bytes was the average size of a spliced alignment
$ 28224 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1881 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 313 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:54:41
-->
