<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:53:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g14460" ref_strand="+" ref_description="C2_At5g14460">
      <seq>tatcaattggagaagaagttttttcccgatcagggttttgataaggcttttcttgatcctgggcagtcgaatgagaatgtaaagaggagtaaaaagaaattggggaagaaggaaaatataatagaaaaagatattgatggtggggatggtaaaagtttgatctttttcgaagaggaagaaaaaagtgtcagctctgaaactaaagaggaagctaaagttgatgtatcggaaaagaaagtggaagagttcttcaagtgtttgaagaaagttccaaataaggaaaatggtgttgccagtgccgagccatttctagcgacaaggagtacagggcttcctcctaaatgggatagtccgggtgggactgttgtattagtgaacaaaccaaaaggttggacttcttttactgtttgtggaaagttgcgtcgcttaacaaaagtgaaaaaggttggccatgctggaacacttgatcctatggcaactggcttattgattgtatgtgttggtagatctacgaagatcgttgacagctatcagggtatgatgaagggctacagtggaatcttccgtttgggagaagccacctctacctgngatgcagattccccggttattcaacgagatccatgggagcatatcaaggatgaggacataaagaaaacggcagcatcctttttggagagatatggcaagtccctccgatgttctcagcaatcaaagttggtggtgaaaagatgtatgataaagcaagaagaggagaaagcatcgaacttgcaccgagaaggatttcaattttcgaatttgacgtgaagcggagtttagatgacagacagaatgtgattttccgagtaagatgctcaaaaggtacctatgtccgatcactttgtgcagacttcgggaaagctcttggcagttgtgctcacttgacagctctgcgacgagattcaattggagagtatacagcggatgatgcttgggaatttcaagaattggaagaggcaatcaccaaaggatatttgtaagattctttttgagattacatgggcagagttatccagtacatgtgctggtgagaagctgcaggtatcagcagaaaagtagatgcccacaggctggcctggacaccaccattacagaagaaacagttcttggaaaatcctcatttttggtggcaattggagatctatacatatttatgttctgtctagctacctcaacaaagagataatagtattttcaccttctccacattacctctttccttggcccccaattttgcttcgtttctgggcgaaagtggtgttagaaccttttataacatatagattaggatgagttgtaatatatctttgtatttcaagaaatgctgggaatcaaaagatttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0034H10.2" temp_strand="-" temp_description="C02SLe0034H10.2  AC215453.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0034H10 sequenced_by:kribb upload_account_name:korea">
        <position start="66011" stop="60789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65711" g_stop="65324" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65323" i_stop="64750" i_length="574">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64749" g_stop="64694" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="444" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64693" i_stop="63898" i_length="796">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63897" g_stop="63815" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="527" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63814" i_stop="63661" i_length="154">
            <donor d_prob="0.042" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63660" g_stop="63582" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="606" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63581" i_stop="63329" i_length="253">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63328" g_stop="63218" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="716" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63217" i_stop="62686" i_length="532">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62685" g_stop="62576" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="826" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62575" i_stop="62073" i_length="503">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62072" g_stop="61989" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="910" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61988" i_stop="61832" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61831" g_stop="61794" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="948" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61793" i_stop="61502" i_length="292">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61501" g_stop="61180" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="949" r_stop="1261" r_length="313" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0034H10.2" gen_strand="-" ref_id="C2_At5g14460" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>1271</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0034H10.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g14460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65711" e_stop="65324"/>
          <exon e_start="64749" e_stop="64694"/>
          <exon e_start="63897" e_stop="63815"/>
          <exon e_start="63660" e_stop="63582"/>
          <exon e_start="63328" e_stop="63218"/>
          <exon e_start="62685" e_stop="62576"/>
          <exon e_start="62072" e_stop="61989"/>
          <exon e_start="61831" e_stop="61794"/>
          <exon e_start="61501" e_stop="61180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAATTGGAGAAGAAGTTTTTTCCTGATCAGGGTTTTGATAAGGCTTTTCTTGATCCTGGGCAGTCAAATGAGAATGTAAACAGGAGTAAAAAGAAATTGGGGAAGAAGGAAAATTTAATAGAAAAAGATATTGATGGTGGGGATGGTAAAAGTTTGATCTTTTTCGAAGAGGAAGAAAAAAGCGTCAGCTCTGAAACTAAGAAGGAAGCTAAAGTTGATGTAGCGGAAAAGAAAGTGGAAGATTTCTTCAAGTGTTTGAAGAAAGTTCCAAATAAGGAAAATGGTGTTGTTAGTGCTGAGCCATTTCTAGCGACAAGGAGTACAGGGCTTCCTCCTAAATGGGATAGTCCGGGTGGGACAGTTGTATTAGTAAACAAACCAAAAGGTGAGTTTGAGCTCCTAATTGGTATAACACTTGGATTTATCTTGCAAAAGATGATCATATTTTAGATGTTGACGTGATTCTGAAGAATTAAAGTAAGTGTGTTAAGTTCTCATGTGAAGTCAAAGTTAGGTGTTTTGAGTTTCTAACTGAAACAAGAAGCATTACAAGTAGAGATGCTGAATGCAATTCTTGCTTTAGAAGTTTGAGTACATTTGGTTGTTTAATTTTTAAATGAGAGGTGTACACTCTGGGAGTCGTATAGTCAGAAATAAATTAAATTTGTTTGGGAGTGTATGGGTAATTAATGAAAACTGCTCAAGCAACTCGTATGTTTTAGTGTTGTGCTCACAAAGCTCATAAAGGACTTTTACGTTCTTAGGCAAAAATACATTCGCATAAAAACAGAATTAGTATGGAATTAGGATTACATTGGGTATGTTGTTGTTGTGTTGATTGCCTTTTATTATCCAACATTGTAAATTCAAACAATGATTTGGACACTCTTGCATGAATTTTGTTATAAAAGCTTGGTTTCCTTCTTTCTTTTGTAACTAGTGTCTGAATTGCCTTACAGGTTGGACTTCTTTTACTGTTTGTGGAAAGTTGCGTCGCTTAACAAAAGTGAAAAAGGTATATCTTTCCTAAGAACAATGTAGGGACTATTTGATATGGTCTTGGAGAAGCAGTATGCAAACTCGCTTTAAAAATATTTCAGGATAAGCTTTTTATGGTAATCTTTTGTATTTGAAGGTGCATTAGCACGTCAGTCTTAGGAAGAAGAATGCAAGTTAAAATTATTTGGATGAATGTTTTCACTTTAACTTTGAGTCTGTACTTTGGTTATATCCATGCTGATTAATAGAACTCTTACATTAAAAAGTAGGAGCTTGAATAAAGTTTTGATTTTTGTCTGTAGATTTACTATTTTGATTTTCTTCTAAGATATCCATTCCTAATGTAAGATACTGAAATCTTAGAATTCTAACATGAGTATCAATTCCCTTCATCAAGTTTTCTTTATTCTTTTTGGTGTTGGACCCTCCATTAAATCTAGTCTGCTAGCCAGAAGACTTTATTCAGTAAAGTTAGAGCTGTGGAGTATGGGCTTAAGAAGATGCTGGGCATATAGAAAAAAAGAGTATCTAGAAAATTTTGGGGAATTAGGGTACATTTCTAAGCATTTTGTTACCTCCTCCACCAAATTTTTATTTTAAATTGAAGACCTTCAAACAAACTTCTGTTTCTAAAAAAATTGTGCCACTCTATCAGGAGGGGGCAGGTTTTTATGTCTTATTCATTTGATTTGATTGGGGGTTTTATGCTTATGTTCACGTGGTTGGGGGCATTTTTCACTTTCTGACTTAATACAAACTGCACTGAGGCATTTCATGCTTACCAGCTTCTCGTTCAATGTAATCTTTTGCAGGTTGGCCATGCTGGAACACTTGATCCTATGGCAACTGGATTATTGATTGTATGTGTTGGTAAATCTACAAAGATCGTTGACAGGTAATAAGGTTTTAGATGATTAAACTGAGGGAGATTTCAGGGGTTCCTAAAATTTCATGAGACTTTCTTCCTGCTAATTTCCCTCTGTCTTAAGAGAACTTATCCATGTCTATGGGAAGTTATGTAATAACTTAAGTTGAATTGTTCTTGGCAGCTATCAGGGTATGACTAAGGGCTACAGTGGGATCTTCCGTTTGGGAGAAGCCACCTCTACCTGGGATGCAGATTCCCCGGTATTTAGTTGTTTTTTTTGAAGTTATATTTCTTCAGATAAATCTGGAATGTGTGGCTTATTTCACCCACACGAAAGTCTCATTTAATCATCAGCAACACAAATTAAGATGGAAAGATGAGAAATTTCGTGATAAAGCCATCATGAATAAAGTCTACACACTCACACTAGTTGATGTTACATAAACAGGATCTAGTTATTTGTTTACCCCAGGTTTCATCTTACCTATGAATTTTGGATTTTGCAATGTTCAGGTTATTCAACGAGAGCCATGGGAGCATATCAAGGATGAGGACATAAAGAAAACGGCAGCATCCTTTTTTGGAGAGATATGGCAAGTCCCTCCGATGTTCTCAGCAATCAAAGTAAGTTTATTTTTGTTGCAGCACTTCCGATCGTCCAATTTTTTATTTTGCTGAACATGTAGTGTGCCTCTGCATATTTTGATAATGTACCGAATTATTACATCACTTCCTTACCCTGGAGAATAGAATTAGTGATACCAAATTAACACTTCCTCAAACAATTCATTCTTAAAGTTTTCAACATGCTTAATTGTATTGAAGTCATGTTGTTTATCGATCTCATGAAAAGAAAGCGTGTTGAATCAACTTCAGCTATATCTCAAGTCCATGTAATGCAGAGATATTGCTGCTGATACTAATTGTGATTGGACATAAGCTTAAATAGAAGAGCATGCTGATTTAGAAAAGCTAGGTGCTACTTCTGTAGTCTGTAATCGCTTGAGTGGTATTTTATCTTTTCTTTTGTAGGTTCTTAAGCTCTTTCAATTTTTGTCAGCGTCATCAGAATTTCTCTTGGGTGACCAAGGTATGAATGGGATTCGGTATACTGTTTTACACTTCTGCTTATTAGACTCCTGTCTACTTATGATAGGTTGGTGGTGAAAAGATGTATGATAAAGCAAGAAGAGGAGAAAGCATCGAACTTGCACCAAGAAGGATTTCAATTTTCGAATTTGACGTGAAGCGGAGTTTAGATGACAGGTTATCTTGTTAAGATCTTCTTGTACTAATCTTGTACCATATGGATGCTCAACTCTTGAGAACTCATATCTATGTGGGTAGTGTGTGTGTGTAACAGTGTGTGAGTTAAAAGCTCTAGCCAAGGTTCTCTCAAGTGTCTAACATTCCTTGGGTGCTCCCAAAGTGTCTTACCATCCCTCTATACTGCATTGAATACTTTAGTGCTAGTTGTACACTGAAGCATGTTTATATTTGAAACGCACTTTCATGTGAAGCATGTTATATCCCATCCAGTTACTCTCGAGGGAATCTGAGTATTTCTTGAAGCTCATGAATATCTATATGTCAGACATTCTTTCATGTGAAGCAGTATAATACATATTGGGACAGAAATGCTTATAATTTACTTGTCTTGATGAGCAAGTACTTTTGTTGCTGAAGGTTGTCACTCCACTATAGTTGGCTTATCACTTCGTGAAATCATATTGAAGATATTTCTTTTCCCCTTCTTTTTTTATTGGCAGACAGAATGTGATTTTCCGAGTAAGATGCTCAAAAGGTACCTATGTCCGATCACTTTGTGCAGACTTCGGGAAAGCTCTTGGCAGGTACCATATAAAGATAATATTTGTTTTAATACTTTAAGGTTTTCCTTTTGTGGTAGATGATGAGAAATGACAAATCTCTCGGTGATGCATAATTCCTTTTTAATTCTTAATGTTCTTATAAGTGGATTCAAACCCAAGCTGAAATTTTATCATGCAGTTGTGCTCACTTGACAGCTCTGCGACGAGATTCAATTGGTAAGACACTGTTATTTTGAATTCGGTTATTTATAGTTAGTCCTGAAAGTCTAGCTTGTCATGTTTACATACGAGAGGTCTGCATTGCTGCCTGTGAGCAGATCGTAGTCAGGGTTTACAACAATGTTATTGTAGTATTAGAGAATGTTGCCTGAATCTTGCTCCTAATAACATGGCAAGAACACCATTATATGCCTTTTATCTGAAGTAGTCTTGAATTCCACAAGCCAAATCAATCCTGATTCCTTCAAGTACTTGTTCAGTAGCTCATTGTGCTCTCTTTACCTCACAGGAGAGTATACAGCGGATGATGCTTGGGAATTTAAAGAATTGGAAGAGGCAATCACCAAAGGATATTTGTAAGATT-TTTTTGAGGTTCCATGGGACAGAGTTATCCAGTACATGTCTGTGCTGGTAAGAAGCTGCAGGTATCAGCGGAATAGTCTGGGTGCCAACAAGCTGGCTTGCACACCACCATTGAAGAAGAAACAGTTGTTGGAAATTCCACATTTTTGGTGGCAATTGGAGATCTATACATACTTATCTTCTGTCTAGCTACTTCAACAAAGGGACAGTAGTTTTTTCACCTTCTCCTCCACATTACCTCTTTCCTT</genome_strand>
        <mrna_strand>TATCAATTGGAGAAGAAGTTTTTTCCCGATCAGGGTTTTGATAAGGCTTTTCTTGATCCTGGGCAGTCGAATGAGAATGTAAAGAGGAGTAAAAAGAAATTGGGGAAGAAGGAAAATATAATAGAAAAAGATATTGATGGTGGGGATGGTAAAAGTTTGATCTTTTTCGAAGAGGAAGAAAAAAGTGTCAGCTCTGAAACTAAAGAGGAAGCTAAAGTTGATGTATCGGAAAAGAAAGTGGAAGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAAATAAGGAAAATGGTGTTGCCAGTGCCGAGCCATTTCTAGCGACAAGGAGTACAGGGCTTCCTCCTAAATGGGATAGTCCGGGTGGGACTGTTGTATTAGTGAACAAACCAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACTTCTTTTACTGTTTGTGGAAAGTTGCGTCGCTTAACAAAAGTGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCATGCTGGAACACTTGATCCTATGGCAACTGGCTTATTGATTGTATGTGTTGGTAGATCTACGAAGATCGTTGACAG..........................................................................................................................................................CTATCAGGGTATGATGAAGGGCTACAGTGGAATCTTCCGTTTGGGAGAAGCCACCTCTACCTGNGATGCAGATTCCCCG.............................................................................................................................................................................................................................................................GTTATTCAACGAGATCCATGGGAGCATATCAAGGATGAGGACATAAAGAAAACGGCAGCATCC-TTTTTGGAGAGATATGGCAAGTCCCTCCGATGTTCTCAGCAATCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGGTGAAAAGATGTATGATAAAGCAAGAAGAGGAGAAAGCATCGAACTTGCACCGAGAAGGATTTCAATTTTCGAATTTGACGTGAAGCGGAGTTTAGATGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAATGTGATTTTCCGAGTAAGATGCTCAAAAGGTACCTATGTCCGATCACTTTGTGCAGACTTCGGGAAAGCTCTTGGCAG.............................................................................................................................................................TTGTGCTCACTTGACAGCTCTGCGACGAGATTCAATTG....................................................................................................................................................................................................................................................................................................GAGAGTATACAGCGGATGATGCTTGGGAATTTCAAGAATTGGAAGAGGCAATCACCAAAGGATATTTGTAAGATTCTTTTTGAGATTACATGGG-CAGAGTTATCCAGTACA----TGTGCTGGTGAGAAGCTGCAGGTATCAGCAGAAAAG--TAGATGCCCACAGGCTGGCCTGGACACCACCATTACAGAAGAAACAGTTCTTGGAAAATCCTCATTTTTGGTGGCAATTGGAGATCTATACATATTTATGTTCTGTCTAGCTACCTCAACAAAGAGATAATAGTATTTTCACC-T-T-CTCCACATTACCTCTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cTOB-6-I3" ref_strand="+" ref_description="cTOB-6-I3">
      <seq>ggctgggctgcaggtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatcttctcccacctctttatctgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0034H10.2" temp_strand="-" temp_description="C02SLe0034H10.2  AC215453.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0034H10 sequenced_by:kribb upload_account_name:korea">
        <position start="74925" stop="72858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74630" g_stop="74430" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74429" i_stop="74164" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74163" g_stop="74014" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="352" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74013" i_stop="73530" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73529" g_stop="73341" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="541" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73340" i_stop="73247" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73246" g_stop="73158" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="630" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0034H10.2" gen_strand="-" ref_id="cTOB-6-I3" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0034H10.2" gen_strand="-"/>
        <rDNA rDNA_id="cTOB-6-I3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74630" e_stop="74430"/>
          <exon e_start="74163" e_stop="74014"/>
          <exon e_start="73529" e_stop="73341"/>
          <exon e_start="73246" e_stop="73158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCGGCAG-TGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTA</genome_strand>
        <mrna_strand>GGCTGGGCTGCAGGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT24-F" ref_strand="+" ref_description="CT24-F">
      <seq>cttttttttttttttttaacgacgagagtcaattgaggattaacaaaatataagagtacaggtctttggatggaccttattttttacaactataatatacatcacagcgacccaactcctcacaattaagtcacaacgctgagtctatatcatgcatcttcctgcaacaacgtccttcacctttgaattaccatggctaaaactcaaaagtgtacctttttatcttatgtggaagaaagaccaaaagctaacttatctaatgacatatctgggctaaacattttgtgagcttactattgtataataagatagctcacctccgagtattttctaaagaattaacaaacttttcccttggggatcagtagcagtggttgaaacagaagaagaaacctcttggctgattctccatgggcgttttagggggctcaaccgagtcatcacgcttggacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0034H10.2" temp_strand="+" temp_description="C02SLe0034H10.2  AC215453.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0034H10 sequenced_by:kribb upload_account_name:korea">
        <position start="99585" stop="100631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99876" g_stop="100331" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0034H10.2" gen_strand="+" ref_id="CT24-F" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0034H10.2" gen_strand="+"/>
        <rDNA rDNA_id="CT24-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99876" e_stop="100331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATCAGTTCATATAAACGACGAGAGTCAATTGAGGTTTAACAAAATATAGGAGTACAGGTCTTTGGATGGACCTTATTTTTTACAACTATAATATACATCACAGCAACCCAACTCCTCACAATTAAGTCAGAACGC-GAGTCTAGATCATGCATCTTCCTGCAACAACGTCCTTCACCTTTGAATTACCATGGCTAAAACTCAAAAGTGTACCTTTTTATCTTATGTGGAAGAAAGACCAAAAGCTAAGTTATCTAGTGACATATCTGGGCTAAACATTTTGTGAGCTTACTATTGTATAATAAGATAGCTCAACTCCGAGTATTTTCTAGAGAATTAACAAACTTTTCCCTTGGGGATCAGTAGCATTGGTTAAAACAGAAGAAGAAACCTCTTGGCTGATTCTCCATGGGTGTTTTAGGGGTCTCAACCGAGTCATCACGCTTGGACATTAA</genome_strand>
        <mrna_strand>CTTTTTTTTTTTTTTTTAACGACGAGAGTCAATTGAGGATTAACAAAATATAAGAGTACAGGTCTTTGGATGGACCTTATTTTTTACAACTATAATATACATCACAGCGACCCAACTCCTCACAATTAAGTCACAACGCTGAGTCTATATCATGCATCTTCCTGCAACAACGTCCTTCACCTTTGAATTACCATGGCTAAAACTCAAAAGTGTACCTTTTTATCTTATGTGGAAGAAAGACCAAAAGCTAACTTATCTAATGACATATCTGGGCTAAACATTTTGTGAGCTTACTATTGTATAATAAGATAGCTCACCTCCGAGTATTTTCTAAAGAATTAACAAACTTTTCCCTTGGGGATCAGTAGCAGTGGTTGAAACAGAAGAAGAAACCTCTTGGCTGATTCTCCATGGGCGTTTTAGGGGGCTCAACCGAGTCATCACGCTTGGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT24-R" ref_strand="+" ref_description="CT24-R">
      <seq>ttttcttttttttctctcttcagtttcccctccggaaccagtaataccagctaggattttcacttcagagaatcatgtattaccaccggagtctccaggtaccagctcgttaatgtccaagcgtgatgactcggttgagacccctaaaacacccatggagaatcagccaagaggtttcttcttctgttttaaccaatgctactgatccccaagggaaaagtttgttaattctctagaaaatactcggagttgagctatcttattatacaatagtaagctcacaaaatgtttagcccagatatgtcactagataacttagcttttggtctttcttccacataagataaaaaggtacacttttgagttttagccatggtaattcaaaggtgaaggacgttgttgcaggaagatgcatgatctagactcgcgttctgacttaattgtgaggagttgggttgctgtgatgtatattatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0034H10-9CaQU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0034H10.2" temp_strand="-" temp_description="C02SLe0034H10.2  AC215453.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0034H10 sequenced_by:kribb upload_account_name:korea">
        <position start="100738" stop="99663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100440" g_stop="99963" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0034H10.2" gen_strand="-" ref_id="CT24-R" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0034H10.2" gen_strand="-"/>
        <rDNA rDNA_id="CT24-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100440" e_stop="99963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAATGTTTAGCCCAGATATGTCACTAGATAACTTAGCTTTTGGTCTTTCTTCCACATAAGATAAAAAGGTACACTTTTGAGTTTTAGCCATGGTAATTCAAAGGTGAAGGACGTTGTTGCAGGAAGATGCATGATCTAGACTCGCGTTCTGACTTAATTGTGAGGAGTTGGGTTGCTGTGATGTATATTATAGTT</genome_strand>
        <mrna_strand>TTTTCTTTTTTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAATGTTTAGCCCAGATATGTCACTAGATAACTTAGCTTTTGGTCTTTCTTCCACATAAGATAAAAAGGTACACTTTTGAGTTTTAGCCATGGTAATTCAAAGGTGAAGGACGTTGTTGCAGGAAGATGCATGATCTAGACTCGCGTTCTGACTTAATTGTGAGGAGTTGGGTTGCTGTGATGTATATTATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="65711" PGL_stop="61180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65711" e_stop="65324"/>
            <exon e_start="64749" e_stop="64694"/>
            <exon e_start="63897" e_stop="63815"/>
            <exon e_start="63660" e_stop="63582"/>
            <exon e_start="63328" e_stop="63218"/>
            <exon e_start="62685" e_stop="62576"/>
            <exon e_start="62072" e_stop="61989"/>
            <exon e_start="61831" e_stop="61794"/>
            <exon e_start="61501" e_stop="61180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.929" e_score="0.964"/>
          <exon-intron don_prob="0.687" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.042" acc_prob="0.996" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="0.949"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.890" acc_prob="0.986" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.888"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="65711" e_stop="65324" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.929">
            <gDNA_intron_boundary i_start="65323" i_stop="64750" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64749" e_stop="64694" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.687" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64693" i_stop="63898" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="63897" e_stop="63815" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.042" acc_prob="0.996">
            <gDNA_intron_boundary i_start="63814" i_stop="63661" i_length="154"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="63660" e_stop="63582" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63581" i_stop="63329" i_length="253"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="63328" e_stop="63218" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63217" i_stop="62686" i_length="532"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="62685" e_stop="62576" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.890" acc_prob="0.986">
            <gDNA_intron_boundary i_start="62575" i_stop="62073" i_length="503"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62072" e_stop="61989" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.939">
            <gDNA_intron_boundary i_start="61988" i_stop="61832" i_length="157"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="61831" e_stop="61794" e_length="38"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.949">
            <gDNA_intron_boundary i_start="61793" i_stop="61502" i_length="292"/>
          </intron>
          <exon e_serial="9" e_score="0.888">
            <gDNA_exon_boundary e_start="61501" e_stop="61180" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65711" stop="65324"/>
              <exon start="64749" stop="64694"/>
              <exon start="63897" stop="63815"/>
              <exon start="63660" stop="63582"/>
              <exon start="63328" stop="63218"/>
              <exon start="62685" stop="62576"/>
              <exon start="62072" stop="61989"/>
              <exon start="61831" stop="61794"/>
              <exon start="61501" stop="61180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g14460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCAATTGGAGAAGAAGTTTTTTCCTGATCAGGGTTTTGATAAGGCTTTTCTTGATCCTGGGCAGTCAAATGAGAATGTAAACAGGAGTAAAAAGAAATTGGGGAAGAAGGAAAATTTAATAGAAAAAGATATTGATGGTGGGGATGGTAAAAGTTTGATCTTTTTCGAAGAGGAAGAAAAAAGCGTCAGCTCTGAAACTAAGAAGGAAGCTAAAGTTGATGTAGCGGAAAAGAAAGTGGAAGATTTCTTCAAGTGTTTGAAGAAAGTTCCAAATAAGGAAAATGGTGTTGTTAGTGCTGAGCCATTTCTAGCGACAAGGAGTACAGGGCTTCCTCCTAAATGGGATAGTCCGGGTGGGACAGTTGTATTAGTAAACAAACCAAAAG : GTTGGACTTCTTTTACTGTTTGTGGAAAGTTGCGTCGCTTAACAAAAGTGAAAAAG : GTTGGCCATGCTGGAACACTTGATCCTATGGCAACTGGATTATTGATTGTATGTGTTGGTAAATCTACAAAGATCGTTGACAG : CTATCAGGGTATGACTAAGGGCTACAGTGGGATCTTCCGTTTGGGAGAAGCCACCTCTACCTGGGATGCAGATTCCCCG : GTTATTCAACGAGAGCCATGGGAGCATATCAAGGATGAGGACATAAAGAAAACGGCAGCATCCTTTTTTGGAGAGATATGGCAAGTCCCTCCGATGTTCTCAGCAATCAAA : GTTGGTGGTGAAAAGATGTATGATAAAGCAAGAAGAGGAGAAAGCATCGAACTTGCACCAAGAAGGATTTCAATTTTCGAATTTGACGTGAAGCGGAGTTTAGATGACAG : ACAGAATGTGATTTTCCGAGTAAGATGCTCAAAAGGTACCTATGTCCGATCACTTTGTGCAGACTTCGGGAAAGCTCTTGGCAG : TTGTGCTCACTTGACAGCTCTGCGACGAGATTCAATTG : GAGAGTATACAGCGGATGATGCTTGGGAATTTAAAGAATTGGAAGAGGCAATCACCAAAGGATATTTGTAAGATTTTTTTGAGGTTCCATGGGACAGAGTTATCCAGTACATGTCTGTGCTGGTAAGAAGCTGCAGGTATCAGCGGAATAGTCTGGGTGCCAACAAGCTGGCTTGCACACCACCATTGAAGAAGAAACAGTTGTTGGAAATTCCACATTTTTGGTGGCAATTGGAGATCTATACATACTTATCTTCTGTCTAGCTACTTCAACAAAGGGACAGTAGTTTTTTCACCTTCTCCTCCACATTACCTCTTTCCTT</gDNA_template>
            <first_frame> Y  Q  L  E  K  K  F  F  P  D  Q  G  F  D  K  A  F  L  D  P  G  Q  S  N  E  N  V  N  R  S  K  K  K  L  G  K  K  E  N  L  I  E  K  D  I  D  G  G  D  G  K  S  L  I  F  F  E  E  E  E  K  S  V  S  S  E  T  K  K  E  A  K  V  D  V  A  E  K  K  V  E  D  F  F  K  C  L  K  K  V  P  N  K  E  N  G  V  V  S  A  E  P  F  L  A  T  R  S  T  G  L  P  P  K  W  D  S  P  G  G  T  V  V  L  V  N  K  P  K   : G  W  T  S  F  T  V  C  G  K  L  R  R  L  T  K  V  K  K  :  V  G  H  A  G  T  L  D  P  M  A  T  G  L  L  I  V  C  V  G  K  S  T  K  I  V  D  S :   Y  Q  G  M  T  K  G  Y  S  G  I  F  R  L  G  E  A  T  S  T  W  D  A  D  S  P  :  V  I  Q  R  E  P  W  E  H  I  K  D  E  D  I  K  K  T  A  A  S  F  F  G  E  I  W  Q  V  P  P  M  F  S  A  I  K  :  V  G  G  E  K  M  Y  D  K  A  R  R  G  E  S  I  E  L  A  P  R  R  I  S  I  F  E  F  D  V  K  R  S  L  D  D  R :   Q  N  V  I  F  R  V  R  C  S  K  G  T  Y  V  R  S  L  C  A  D  F  G  K  A  L  G  S :   C  A  H  L  T  A  L  R  R  D  S  I   : G  E  Y  T  A  D  D  A  W  E  F  K  E  L  E  E  A  I  T  K  G  Y  L  *  D  F  F  E  V  P  W  D  R  V  I  Q  Y  M  S  V  L  V  R  S  C  R  Y  Q  R  N  S  L  G  A  N  K  L  A  C  T  P  P  L  K  K  K  Q  L  L  E  I  P  H  F  W  W  Q  L  E  I  Y  T  Y  L  S  S  V  *  L  L  Q  Q  R  D  S  S  F  F  T  F  S  S  T  L  P  L  S   </first_frame>
            <second_frame>  I  N  W  R  R  S  F  F  L  I  R  V  L  I  R  L  F  L  I  L  G  S  Q  M  R  M  *  T  G  V  K  R  N  W  G  R  R  K  I  *  *  K  K  I  L  M  V  G  M  V  K  V  *  S  F  S  K  R  K  K  K  A  S  A  L  K  L  R  R  K  L  K  L  M  *  R  K  R  K  W  K  I  S  S  S  V  *  R  K  F  Q  I  R  K  M  V  L  L  V  L  S  H  F  *  R  Q  G  V  Q  G  F  L  L  N  G  I  V  R  V  G  Q  L  Y  *  *  T  N  Q  K  :  V  G  L  L  L  L  F  V  E  S  C  V  A  *  Q  K  *  K  R :   L  A  M  L  E  H  L  I  L  W  Q  L  D  Y  *  L  Y  V  L  V  N  L  Q  R  S  L  T   : A  I  R  V  *  L  R  A  T  V  G  S  S  V  W  E  K  P  P  L  P  G  M  Q  I  P  R :   L  F  N  E  S  H  G  S  I  S  R  M  R  T  *  R  K  R  Q  H  P  F  L  E  R  Y  G  K  S  L  R  C  S  Q  Q  S  K :   L  V  V  K  R  C  M  I  K  Q  E  E  E  K  A  S  N  L  H  Q  E  G  F  Q  F  S  N  L  T  *  S  G  V  *  M  T   : D  R  M  *  F  S  E  *  D  A  Q  K  V  P  M  S  D  H  F  V  Q  T  S  G  K  L  L  A   : V  V  L  T  *  Q  L  C  D  E  I  Q  L  :  E  S  I  Q  R  M  M  L  G  N  L  K  N  W  K  R  Q  S  P  K  D  I  C  K  I  F  L  R  F  H  G  T  E  L  S  S  T  C  L  C  W  *  E  A  A  G  I  S  G  I  V  W  V  P  T  S  W  L  A  H  H  H  *  R  R  N  S  C  W  K  F  H  I  F  G  G  N  W  R  S  I  H  T  Y  L  L  S  S  Y  F  N  K  G  T  V  V  F  S  P  S  P  P  H  Y  L  F  P  </second_frame>
            <third_frame>   S  I  G  E  E  V  F  S  *  S  G  F  *  *  G  F  S  *  S  W  A  V  K  *  E  C  K  Q  E  *  K  E  I  G  E  E  G  K  F  N  R  K  R  Y  *  W  W  G  W  *  K  F  D  L  F  R  R  G  R  K  K  R  Q  L  *  N  *  E  G  S  *  S  *  C  S  G  K  E  S  G  R  F  L  Q  V  F  E  E  S  S  K  *  G  K  W  C  C  *  C  *  A  I  S  S  D  K  E  Y  R  A  S  S  *  M  G  *  S  G  W  D  S  C  I  S  K  Q  T  K  R :   L  D  F  F  Y  C  L  W  K  V  A  S  L  N  K  S  E  K   : G  W  P  C  W  N  T  *  S  Y  G  N  W  I  I  D  C  M  C  W  *  I  Y  K  D  R  *  Q  :  L  S  G  Y  D  *  G  L  Q  W  D  L  P  F  G  R  S  H  L  Y  L  G  C  R  F  P   : G  Y  S  T  R  A  M  G  A  Y  Q  G  *  G  H  K  E  N  G  S  I  L  F  W  R  D  M  A  S  P  S  D  V  L  S  N  Q   : S  W  W  *  K  D  V  *  *  S  K  K  R  R  K  H  R  T  C  T  K  K  D  F  N  F  R  I  *  R  E  A  E  F  R  *  Q  :  T  E  C  D  F  P  S  K  M  L  K  R  Y  L  C  P  I  T  L  C  R  L  R  E  S  S  W  Q  :  L  C  S  L  D  S  S  A  T  R  F  N  W :   R  V  Y  S  G  *  C  L  G  I  *  R  I  G  R  G  N  H  Q  R  I  F  V  R  F  F  *  G  S  M  G  Q  S  Y  P  V  H  V  C  A  G  K  K  L  Q  V  S  A  E  *  S  G  C  Q  Q  A  G  L  H  T  T  I  E  E  E  T  V  V  G  N  S  T  F  L  V  A  I  G  D  L  Y  I  L  I  F  C  L  A  T  S  T  K  G  Q  *  F  F  H  L  L  L  H  I  T  S  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0034H10.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65711" stop="65324"/>
                    <exon start="64749" stop="64694"/>
                    <exon start="63897" stop="63815"/>
                    <exon start="63660" stop="63582"/>
                    <exon start="63328" stop="63218"/>
                    <exon start="62685" stop="62576"/>
                    <exon start="62072" stop="61989"/>
                    <exon start="61831" stop="61794"/>
                    <exon start="61501" stop="61431"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQLEKKFFPDQGFDKAFLDPGQSNENVNRSKKKLGKKENLIEKDIDGGDGKSLIFFEEEEKSVSSETKKEAKVDVAEKKVEDFFKCLKKVPNKENGVVSAEPFLATRSTGLPPKWDSPGGTVVLVNKPKGWTSFTVCGKLRRLTKVKKVGHAGTLDPMATGLLIVCVGKSTKIVDSYQGMTKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDEDIKKTAASFFGEIWQVPPMFSAIKVGGEKMYDKARRGESIELAPRRISIFEFDVKRSLDDRQNVIFRVRCSKGTYVRSLCADFGKALGSCAHLTALRRDSIGEYTADDAWEFKELEEAITKGYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="74630" PGL_stop="73158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74630" e_stop="74430"/>
            <exon e_start="74163" e_stop="74014"/>
            <exon e_start="73529" e_stop="73341"/>
            <exon e_start="73246" e_stop="73158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.960"/>
          <exon-intron don_prob="0.976" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.668" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="74630" e_stop="74430" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74429" i_stop="74164" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74163" e_stop="74014" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.871">
            <gDNA_intron_boundary i_start="74013" i_stop="73530" i_length="484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73529" e_stop="73341" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.668" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73340" i_stop="73247" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73246" e_stop="73158" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74630" stop="74430"/>
              <exon start="74163" stop="74014"/>
              <exon start="73529" stop="73341"/>
              <exon start="73246" stop="73158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cTOB-6-I3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG : GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG : ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG : GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTA</gDNA_template>
            <first_frame> T  M  A  A  V  I  E  H  K  S  Y  A  R  V  G  L  L  G  N  P  S  D  V  Y  F  G  N  T  I  S  F  S  L  G  N  F  W  A  S  V  R  L  E  P  S  I  D  L  V  I  V  P  H  P  S  H  D  L  V  Q  F  N  S  I  S  H  L  :  V  N  R  L  Q  N  E  G  Y  Y  G  G  V  R  L  L  M  A  I  V  K  I  F  H  N  Y  C  K  E  S  N  I  T  L  H  D  G  N  F  T  L  S  Y  D  T  N  I  P  R  Q  :  T  G  L  S  G  S  S  A  I  V  S  A  A  L  S  C  L  L  D  F  Y  K  V  R  H  L  I  K  V  E  V  R  P  N  L  V  L  N  A  E  K  E  L  G  I  V  A  G  L  Q  D  R  V  A  Q  V  Y  G  G  V  V  Y  M  :  D  F  D  K  N  H  M  D  E  L  G  H  G  I  Y  T  P  M  D  V  D  L  L  P  P  L  Y  L  I   </first_frame>
            <second_frame>  Q  W  R  Q  *  S  S  T  S  L  T  L  E  L  D  C  L  E  T  L  A  M  F  I  L  G  T  L  Y  P  S  A  S  G  I  F  G  L  L  F  V  W  N  L  L  *  I  S  S  L  F  L  I  L  L  T  I  S  S  N  S  I  Q  F  L  T  W :   *  T  G  C  R  M  R  G  T  M  E  G  F  V  Y  L  W  Q  S  L  K  Y  F  T  T  I  A  K  R  A  T  S  P  Y  M  M  G  I  S  L  S  R  M  T  L  T  F  P  A  R :   Q  G  F  Q  V  L  V  Q  S  *  V  L  H  *  V  A  F  L  I  F  T  K  S  D  I  S  S  K  L  R  *  G  R  T  L  S  L  M  Q  R  R  N  L  E  L  L  Q  V  F  K  I  E  W  P  R  C  M  E  A  L  Y  I  W :   T  L  T  R  I  T  W  M  N  *  V  M  A  Y  I  H  P  W  M  L  I  F  S  H  L  F  I  *  S  </second_frame>
            <third_frame>   N  G  G  S  D  R  A  Q  V  L  R  *  S  W  T  A  W  K  P  *  R  C  L  F  W  E  H  Y  I  L  Q  P  R  E  F  L  G  F  C  S  F  G  T  F  Y  R  S  R  H  C  S  S  S  F  S  R  S  R  P  I  Q  F  N  F  S  P   : G  E  Q  V  A  E  *  G  V  L  W  R  G  S  F  T  Y  G  N  R  *  N  I  S  Q  L  L  Q  R  E  Q  H  H  L  T  *  W  E  F  H  S  L  V  *  H  *  H  S  P  P   : D  R  A  F  R  F  *  C  N  R  K  C  C  T  E  L  P  S  *  F  L  Q  S  Q  T  S  H  Q  S  *  G  K  A  E  P  C  P  *  C  R  E  G  T  W  N  C  C  R  S  S  R  *  S  G  P  G  V  W  R  R  C  I  Y   : G  L  *  Q  E  S  H  G  *  I  R  S  W  H  I  Y  T  H  G  C  *  S  S  P  T  S  L  S  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0034H10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74630" stop="74430"/>
                    <exon start="74163" stop="74014"/>
                    <exon start="73529" stop="73341"/>
                    <exon start="73246" stop="73160"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAAVIEHKSYARVGLLGNPSDVYFGNTISFSLGNFWASVRLEPSIDLVIVPHPSHDLVQFNSISHLVNRLQNEGYYGGVRLLMAIVKIFHNYCKESNITLHDGNFTLSYDTNIPRQTGLSGSSAIVSAALSCLLDFYKVRHLIKVEVRPNLVLNAEKELGIVAGLQDRVAQVYGGVVYMDFDKNHMDELGHGIYTPMDVDLLPPLYLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="99876" PGL_stop="100331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99876" e_stop="100331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="99876" e_stop="100331" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99876" stop="100331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT24-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATCAGTTCATATAAACGACGAGAGTCAATTGAGGTTTAACAAAATATAGGAGTACAGGTCTTTGGATGGACCTTATTTTTTACAACTATAATATACATCACAGCAACCCAACTCCTCACAATTAAGTCAGAACGCGAGTCTAGATCATGCATCTTCCTGCAACAACGTCCTTCACCTTTGAATTACCATGGCTAAAACTCAAAAGTGTACCTTTTTATCTTATGTGGAAGAAAGACCAAAAGCTAAGTTATCTAGTGACATATCTGGGCTAAACATTTTGTGAGCTTACTATTGTATAATAAGATAGCTCAACTCCGAGTATTTTCTAGAGAATTAACAAACTTTTCCCTTGGGGATCAGTAGCATTGGTTAAAACAGAAGAAGAAACCTCTTGGCTGATTCTCCATGGGTGTTTTAGGGGTCTCAACCGAGTCATCACGCTTGGACATTAA</gDNA_template>
            <first_frame> I  N  Q  F  I  *  T  T  R  V  N  *  G  L  T  K  Y  R  S  T  G  L  W  M  D  L  I  F  Y  N  Y  N  I  H  H  S  N  P  T  P  H  N  *  V  R  T  R  V  *  I  M  H  L  P  A  T  T  S  F  T  F  E  L  P  W  L  K  L  K  S  V  P  F  Y  L  M  W  K  K  D  Q  K  L  S  Y  L  V  T  Y  L  G  *  T  F  C  E  L  T  I  V  *  *  D  S  S  T  P  S  I  F  *  R  I  N  K  L  F  P  W  G  S  V  A  L  V  K  T  E  E  E  T  S  W  L  I  L  H  G  C  F  R  G  L  N  R  V  I  T  L  G  H  * </first_frame>
            <second_frame>  L  I  S  S  Y  K  R  R  E  S  I  E  V  *  Q  N  I  G  V  Q  V  F  G  W  T  L  F  F  T  T  I  I  Y  I  T  A  T  Q  L  L  T  I  K  S  E  R  E  S  R  S  C  I  F  L  Q  Q  R  P  S  P  L  N  Y  H  G  *  N  S  K  V  Y  L  F  I  L  C  G  R  K  T  K  S  *  V  I  *  *  H  I  W  A  K  H  F  V  S  L  L  L  Y  N  K  I  A  Q  L  R  V  F  S  R  E  L  T  N  F  S  L  G  D  Q  *  H  W  L  K  Q  K  K  K  P  L  G  *  F  S  M  G  V  L  G  V  S  T  E  S  S  R  L  D  I   </second_frame>
            <third_frame>   *  S  V  H  I  N  D  E  S  Q  L  R  F  N  K  I  *  E  Y  R  S  L  D  G  P  Y  F  L  Q  L  *  Y  T  S  Q  Q  P  N  S  S  Q  L  S  Q  N  A  S  L  D  H  A  S  S  C  N  N  V  L  H  L  *  I  T  M  A  K  T  Q  K  C  T  F  L  S  Y  V  E  E  R  P  K  A  K  L  S  S  D  I  S  G  L  N  I  L  *  A  Y  Y  C  I  I  R  *  L  N  S  E  Y  F  L  E  N  *  Q  T  F  P  L  G  I  S  S  I  G  *  N  R  R  R  N  L  L  A  D  S  P  W  V  F  *  G  S  Q  P  S  H  H  A  W  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0034H10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="100440" PGL_stop="99963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100440" e_stop="99963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="100440" e_stop="99963" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100440" stop="99963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT24-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAATGTTTAGCCCAGATATGTCACTAGATAACTTAGCTTTTGGTCTTTCTTCCACATAAGATAAAAAGGTACACTTTTGAGTTTTAGCCATGGTAATTCAAAGGTGAAGGACGTTGTTGCAGGAAGATGCATGATCTAGACTCGCGTTCTGACTTAATTGTGAGGAGTTGGGTTGCTGTGATGTATATTATAGTT</gDNA_template>
            <first_frame> A  S  S  F  S  L  F  S  F  P  S  G  T  S  N  T  S  *  D  F  H  F  R  E  S  C  I  T  T  G  V  S  R  Y  Q  L  V  N  V  Q  A  *  *  L  G  *  D  P  *  N  T  H  G  E  S  A  K  R  F  L  L  L  F  *  P  M  L  L  I  P  K  G  K  V  C  *  F  S  R  K  Y  S  E  L  S  Y  L  I  I  Q  *  *  A  H  K  M  F  S  P  D  M  S  L  D  N  L  A  F  G  L  S  S  T  *  D  K  K  V  H  F  *  V  L  A  M  V  I  Q  R  *  R  T  L  L  Q  E  D  A  *  S  R  L  A  F  *  L  N  C  E  E  L  G  C  C  D  V  Y  Y  S  </first_frame>
            <second_frame>  L  L  H  F  L  S  S  V  S  P  P  E  P  V  I  P  A  R  I  F  T  S  E  N  H  V  L  P  P  E  S  P  G  T  S  S  L  M  S  K  R  D  D  S  V  E  T  P  K  T  P  M  E  N  Q  P  R  G  F  F  F  C  F  N  Q  C  Y  *  S  P  R  E  K  F  V  N  S  L  E  N  T  R  S  *  A  I  L  L  Y  N  S  K  L  T  K  C  L  A  Q  I  C  H  *  I  T  *  L  L  V  F  L  P  H  K  I  K  R  Y  T  F  E  F  *  P  W  *  F  K  G  E  G  R  C  C  R  K  M  H  D  L  D  S  R  S  D  L  I  V  R  S  W  V  A  V  M  Y  I  I  V </second_frame>
            <third_frame>   F  F  I  F  S  L  Q  F  P  L  R  N  Q  *  Y  Q  L  G  F  S  L  Q  R  I  M  Y  Y  H  R  S  L  Q  V  P  A  R  *  C  P  S  V  M  T  R  L  R  P  L  K  H  P  W  R  I  S  Q  E  V  S  S  S  V  L  T  N  A  T  D  P  Q  G  K  S  L  L  I  L  *  K  I  L  G  V  E  L  S  Y  Y  T  I  V  S  S  Q  N  V  *  P  R  Y  V  T  R  *  L  S  F  W  S  F  F  H  I  R  *  K  G  T  L  L  S  F  S  H  G  N  S  K  V  K  D  V  V  A  G  R  C  M  I  *  T  R  V  L  T  *  L  *  G  V  G  L  L  *  C  I  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0034H10.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100439" stop="100236"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHFLSSVSPPEPVIPARIFTSENHVLPPESPGTSSLMSKRDDSVETPKTPMENQPRGFFFCFNQCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 98 chains have been computed
$ 
$ memory statistics:
$ 8640 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2160 bytes was the average size of a spliced alignment
$ 9408 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 98 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:53:49
-->
