<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:46:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539328" ref_strand="+" ref_description="SGN-E539328 [TUS-59-A12]">
      <seq>caaatgcacgttgcaaatattgccagtacgaattgaccaattcaaattaaataagctgagtactattgatacttgaaaaggaaacatcaatagtcagaattatttatcttattcacgcatgactcaaacatgtcctagacattttcttgataccaaaaatcacttcagctcctggtgttggcgtaatcctttggttcgtcatcgtcatccctgtagttcccttctgatgtttcctctccgagatgttcatttacagattgaattccctgatctgcactaacctgttcttggcttccattatatgatgcttcagatctcccaccaaatcccgtgttagcgaagctattattattgttactaggagctccaccaaagtcattcccactgttgccaccaccataaccacctgagaaactactgccttgaccagaataattgatgtttggagtgctgcttccgtagttgccaccctcaacaggggaactgttgttcccatagctgctactaccacctccatagctaccgtagcctccagcagaactgtgaccactagaaaatccaccaccgtaattgttggtttggtaacctccagaacctgcaaaatttctgccttcccccccgccatagttatagccactactgctaccgtagccacctcctccagcagaattgtagccacctcctccaggagaattgtagtcgagtgagcctttctacaaagagctagagcctacacctggtgacatgattcgcaatcaaagcttgtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="+" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="3583" stop="4883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3883" g_stop="4580" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="+" ref_id="SGN-E539328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3883" e_stop="4580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAATCCACCACCGTAATTGTTGGTTTGGTAACCTCCAGAACCTGCAAAATTTCTGCCTTCCCCCCCGCCATAGTTATAGCCACTACTGCTACCGTAGCCACCTCCTCCAGCAGAATTGTAGCCACCTCCTCCAGGAGAATTGTA</genome_strand>
        <mrna_strand>CAAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAATCCACCACCGTAATTGTTGGTTTGGTAACCTCCAGAACCTGCAAAATTTCTGCCTTCCCCCCCGCCATAGTTATAGCCACTACTGCTACCGTAGCCACCTCCTCCAGCAGAATTGTAGCCACCTCCTCCAGGAGAATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284080" ref_strand="+" ref_description="SGN-E284080 [cLER-13-K12]">
      <seq>aaatgcacgttgcaaatattgccagtacgaattgaccaattcaaattaaataagctgagtactattgatacttgaaaaggaaacatcaatagtcagaattatttatcttattcacgcatgactcaaacatgtcctagacattttcttgataccaaaaatcacttcagctcctggtgttggcgtaatcctttggttcgtcatcgtcatccctgtagttcccttctgatgtttcctctccgagatgttcatttacagattgaattccctgatctgcactaacctgttcttggcttccattatatgatgcttcagatctcccaccaaatcccgtgttagcgaagctattattattgttactaggagctccaccaaagtcattcccactgttgccaccaccataaccacctgagaaactactgccttgaccagaataattgatgtttggagtgctgcttccgtagttgccaccctcaacaggggaactgttgttcccatagctgctactaccacctccatagctaccgtagcctccagcagaactgtgaccactagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="+" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="3584" stop="4739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3884" g_stop="4439" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="+" ref_id="SGN-E284080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3884" e_stop="4439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAA</genome_strand>
        <mrna_strand>AAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587655" ref_strand="-" ref_description="SGN-E587655 [41191]">
      <seq>atggtggggaaggtggaaatgttgtaggtttctggaggttacccaaccaacaattacggtggtggagggggtggattttctagtggtaacagttctgctggaggatacggtagctatggaggtggtagtagcaactatgggaacaacagttcccctgttgagggtggtaactacggaagcagcactccanacatgaattattctggtcaaggcagtagtttttcaggtggttatggtggtggcaacagtgggaatgactttgttggggatcctagtaacaataatagcttcgctaacacgggatttggtgggagctctgaaacatcatataatggaagccaagaacaggttagtgcagatcagggaattcaatctatgaatgaacatctaggacaggaaacatcagaagggaactacagggatgacgatgacgaaccaaaggattacgccaacaccaggggctgaagaaatgtttagtatcaagagaatgtctaggacatgtttgagtcatatgcgtgaataagattagaaattctgtactattgatatttcctttgaagtatcaataatactcagcttattatatggtggactttgattggtcatttcgtactggcgatatgcgtgttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="4802" stop="3696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4666" g_stop="4585" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.793"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4584" i_stop="4432" i_length="153">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.049" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4431" g_stop="3935" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="579" r_length="496" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E587655" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4666" e_stop="4585"/>
          <exon e_start="4431" e_stop="3935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGAGAAGGTGGAAACTTTGCAGG-TGGTGGAGGTTATGCAGCCAGTAATTATGGAGGTGGAGGTGGTGGATTTTCTGGTGGCTACAATTCTCCTGGAGGAGGTGGCTACAATTCTGCTGGAGGAGGTGGCTACGGTAGCAGTAGTGGCTATAACTATGGCGGGGGGGAAGGCAGAAATTTTGCAGGTTCTGGAGGTTACCAAACCAACAATTACGGTGGTGGATTTTCTAGTGGTCACAGTTCTGCTGGAGGCTACGGTAGCTATGGAGGTGGTAGTAGCAGCTATGGGAACAACAGTTCCCCTGTTGAGGGTGGCAACTACGGAAGCAGCACTCCAAACATCAATTATTCTGGTCAAGGCAGTAGTTTCTCAGGTGGTTATGGTGGTGGCAACAGTGGGAATGACTTTGGTGGAGCTCCTAGTAACAATAATAATAGCTTCGCTAACACGGGATTTGGTGGGAGATCTGAAGCATCATATAATGGAAGCCAAGAACAGGTTAGTGCAGATCAGGGAATTCAATCTGTAAATGAACATCTCGGAGAGGAAACATCAGAAGGGAACTACAGGGATGACGATGACGAACCAAAGGATTACGCCAACACCAGGAGCTGAAGTGATTTTTGGTATCAAGAAAATGTCTAGGACATGTTTGAGTC--ATGCGTGAATAAGATAAATAATTCTG-ACTATTGATGTTTCCTTTTCAAGTATCAATAGTACTCAGCTT</genome_strand>
        <mrna_strand>ATGGTGGGGAAGGTGGAAATGTTGTAGGTTTCTGGAGGTTACCCAACCAACAATTACGGTGGTGGAGGGGGTGGATTTTCTAG.........................................................................................................................................................TGGTAACAGTTCTGCTGGAGGATACGGTAGCTATGGAGGTGGTAGTAGCAACTATGGGAACAACAGTTCCCCTGTTGAGGGTGGTAACTACGGAAGCAGCACTCCANACATGAATTATTCTGGTCAAGGCAGTAGTTTTTCAGGTGGTTATGGTGGTGGCAACAGTGGGAATGACTTTGTTGGGGATCCTAGTAAC---AATAATAGCTTCGCTAACACGGGATTTGGTGGGAGCTCTGAAACATCATATAATGGAAGCCAAGAACAGGTTAGTGCAGATCAGGGAATTCAATCTATGAATGAACATCTAGGACAGGAAACATCAGAAGGGAACTACAGGGATGACGATGACGAACCAAAGGATTACGCCAACACCAGGGGCTGAAGAAATGTTTAGTATCAAGAGAATGTCTAGGACATGTTTGAGTCATATGCGTGAATAAGATTAGAAATTCTGTACTATTGATATTTCC-TTTGAAGTATCAATAATACTCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312047" ref_strand="+" ref_description="SGN-E312047 [cTOA-11-G9]">
      <seq>tccaccaaaggttggattaaagatggcttttgtcaataaaattgggaatattcttagacatggtgtaggcaaaaacgcaaacttggaactctctgcctcaaatggttcacttttccagactataagaagcatgtcttcgtctaagcttttcgttgggggtctctcgtatggcactgatgaaagttctctgaaagagacattctctcaatatggtgaagtaatcgaagctagagttattctggatcgtgaaactgggaggtccagaggatttggttttattagttttccatcaagtgaagaagcaacaagtgccatgcaggccatggatggccaggatcttcatggaagacggataaaggtgaattatgccacagaaaaacgtcgtgatggttttggaggtggctatggtggagaaggtggaaactttgcaggtggtggaggttatgcagccagtaattatggaggtggaggtggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="6339" stop="4293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6037" g_stop="5890" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="158" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5889" i_stop="5807" i_length="83">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5806" g_stop="5738" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="227" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5737" i_stop="5334" i_length="404">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5333" g_stop="5227" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="334" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5226" i_stop="4737" i_length="490">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4736" g_stop="4593" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="478" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E312047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6037" e_stop="5890"/>
          <exon e_start="5806" e_stop="5738"/>
          <exon e_start="5333" e_stop="5227"/>
          <exon e_start="4736" e_stop="4593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTAAAGATGGCTTTTGTCAATAAAATTGGGAATATTCTTAGACATGGTGTAGGCAAAAACGCAAACTTGGAACTCTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGGGTGAGAAGATGTTTTTTTTGTGTGTAGCTCTTGTTATTTGCTCACTTCTTTTGTTTACTCTAATTGTGTATTGTTTACTGCAGGTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATCGAAGGTACTTGGGTTACTGTTTATGCATTTCATTTAAAAGGGATGAATCACTGTGTAGATGCAGCATTAGCTAATATCAAGTCTGTGGTGATTACTAATAGAAACAAGTTAGCACTTCCAATCATTATGGCATAGTGAATATGTAGAAGAAACAATTATTATCCATTGTTTTGAATTAGTTATGAAGTTGAAGTCAAATTCATTTCTCCTATTAATGAAACAAGACGTCTTTGGTCTTAACTGGATATGTTTCCTTATCAATTTAGTTCTTGGTGAAAGGTCTCAATTCTAATGATCCATGAGACAGATCTGTGTGCAGTCTCTCTGGAGATTTCTCTGAGGCCAGCTTCTTTTGCTGTGTGTTATTTAACTCAACTTTGGAATAAACTATTTCCTCCCCCTTTGCAGCTAGAGTTATTCTGGATCGTGAAACTGGGAGGTCCAGAGGATTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAGGTATGATGTTACTTCTAGTTGGAAAGGTATCCTTGTGAACACAAGCTACACAGATTTTTTTAGCAGTATCTGAAAAAGAAGAACTTGAACAGACCAATATGGATTTCATAGGGAAAGGACATCTTTACTTGTAATGCATATAGTTCAGAGGACAATATTTCACCGAAATCACACTTTGTATCTGCATGGAACAGTGACATCTTTTAGTTTGTTTAATAAATTTCATGAAGTAATTATCGTCATCACTTTACAGAGTAAAACTATTTGTAGAGAGTGAGAATCTTCTTGATAATCCTATCGCTTGTAATTCCACTCGCTTAAATATCTGTATAGCTTACCTGTTGCACCTGTCCCACCAAACGTCCTACCAGTTCCATCTTGGGTTGGGCGATCAATGTGATATTTACTAGCAAATTAAGCTCTCACTGGTCAATTTTGGATTTCTTTTAGTAATGGTGCTAAAGTAATTTATACTTTGTAACTTATTCAGGATCTTCATGGAAGACGGATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGAGGTGGCTATGGTGGAGAAGGTGGAAACTTTGCAGGTGGTGGAGGTTATGCAGCCAGTAATTATGGAGGTGGAGGTGGTGGA</genome_strand>
        <mrna_strand>GTTGGATTAAAGATGGCTTTTGTCAATAAAATTGGGAATATTCTTAGACATGGTGTAGGCAAAAACGCAAACTTGGAACTCTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGG...................................................................................GTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGTTATTCTGGATCGTGAAACTGGGAGGTCCAGAGGATTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCATGGAAGACGGATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGAGGTGGCTATGGTGGAGAAGGTGGAAACTTTGCAGGTGGTGGAGGTTATGCAGCCAGTAATTATGGAGGTGGAGGTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278882" ref_strand="+" ref_description="SGN-E278882 [cLER-2-E3]">
      <seq>aataatattgggaatattcttagacatggtgtatgcaaaaacgcaaacttggaactctctgcctcaaatggttcacttttccagactataagaagcatgtcttcgtctaagcttttcgttgggggtctctcgtatggcactgatgaaagttctctgaaagagacattctctcaatatggtgaagtaatcgaagctagagttattctggatcgtgaaactgggaggtccagaggatttggttttattagttttccatcaagtgaagaagcaacaagtgccatgcaggccatggatggccaggatcttcatggaagacggataaaggtgaattatgccacagaaaaacgtcgtgatggttttggaggtggctatggcggagaaggtggaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="6313" stop="4341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6013" g_stop="5890" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5889" i_stop="5807" i_length="83">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5806" g_stop="5738" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="193" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5737" i_stop="5334" i_length="404">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5333" g_stop="5227" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="300" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5226" i_stop="4737" i_length="490">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4736" g_stop="4641" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="396" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E278882" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6013" e_stop="5890"/>
          <exon e_start="5806" e_stop="5738"/>
          <exon e_start="5333" e_stop="5227"/>
          <exon e_start="4736" e_stop="4641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAATTGGGAATATTCTTAGACATGGTGTAGGCAAAAACGCAAACTTGGAACTCTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGGGTGAGAAGATGTTTTTTTTGTGTGTAGCTCTTGTTATTTGCTCACTTCTTTTGTTTACTCTAATTGTGTATTGTTTACTGCAGGTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATCGAAGGTACTTGGGTTACTGTTTATGCATTTCATTTAAAAGGGATGAATCACTGTGTAGATGCAGCATTAGCTAATATCAAGTCTGTGGTGATTACTAATAGAAACAAGTTAGCACTTCCAATCATTATGGCATAGTGAATATGTAGAAGAAACAATTATTATCCATTGTTTTGAATTAGTTATGAAGTTGAAGTCAAATTCATTTCTCCTATTAATGAAACAAGACGTCTTTGGTCTTAACTGGATATGTTTCCTTATCAATTTAGTTCTTGGTGAAAGGTCTCAATTCTAATGATCCATGAGACAGATCTGTGTGCAGTCTCTCTGGAGATTTCTCTGAGGCCAGCTTCTTTTGCTGTGTGTTATTTAACTCAACTTTGGAATAAACTATTTCCTCCCCCTTTGCAGCTAGAGTTATTCTGGATCGTGAAACTGGGAGGTCCAGAGGATTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAGGTATGATGTTACTTCTAGTTGGAAAGGTATCCTTGTGAACACAAGCTACACAGATTTTTTTAGCAGTATCTGAAAAAGAAGAACTTGAACAGACCAATATGGATTTCATAGGGAAAGGACATCTTTACTTGTAATGCATATAGTTCAGAGGACAATATTTCACCGAAATCACACTTTGTATCTGCATGGAACAGTGACATCTTTTAGTTTGTTTAATAAATTTCATGAAGTAATTATCGTCATCACTTTACAGAGTAAAACTATTTGTAGAGAGTGAGAATCTTCTTGATAATCCTATCGCTTGTAATTCCACTCGCTTAAATATCTGTATAGCTTACCTGTTGCACCTGTCCCACCAAACGTCCTACCAGTTCCATCTTGGGTTGGGCGATCAATGTGATATTTACTAGCAAATTAAGCTCTCACTGGTCAATTTTGGATTTCTTTTAGTAATGGTGCTAAAGTAATTTATACTTTGTAACTTATTCAGGATCTTCATGGAAGACGGATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGAGGTGGCTATGGTGGAGAAGGTGGAAACTTTGCA</genome_strand>
        <mrna_strand>AATAATATTGGGAATATTCTTAGACATGGTGTATGCAAAAACGCAAACTTGGAACTCTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGG...................................................................................GTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGTTATTCTGGATCGTGAAACTGGGAGGTCCAGAGGATTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCATGGAAGACGGATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGAGGTGGCTATGGCGGAGAAGGTGGAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444665" ref_strand="+" ref_description="SGN-E444665 [cSTA-43-D8]">
      <seq>tccttccaccaaaggtttaaagatggcttttctcaataaaattgggaatattcttaaacatggtgtaggcaaaaacacaaacttggaactttctgcctcaaatggttcacttttccagactataagaagcatgtcttcgtctaagcttttcgttgggggtctctcgtatggcactgatgaaagttctctgaaagagacattctctcaatatggtgaagtaattgaagctagagtcattctggatcgtgaaactgggaggtccagagggtttggttttattagttttccatcaagtgaagaagcaacaagtgccatgcaggccatggatggccaggatcttcatggaagacgcataaaggtgaattatgccacagaaaaacgtcgtgatggttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="6334" stop="4374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6037" g_stop="5890" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="158" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5889" i_stop="5807" i_length="83">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5806" g_stop="5738" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="227" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5737" i_stop="5334" i_length="404">
            <donor d_prob="0.879" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5333" g_stop="5227" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="334" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5226" i_stop="4737" i_length="490">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4736" g_stop="4674" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E444665" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6037" e_stop="5890"/>
          <exon e_start="5806" e_stop="5738"/>
          <exon e_start="5333" e_stop="5227"/>
          <exon e_start="4736" e_stop="4674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTAAAGATGGCTTTTGTCAATAAAATTGGGAATATTCTTAGACATGGTGTAGGCAAAAACGCAAACTTGGAACTCTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGGGTGAGAAGATGTTTTTTTTGTGTGTAGCTCTTGTTATTTGCTCACTTCTTTTGTTTACTCTAATTGTGTATTGTTTACTGCAGGTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATCGAAGGTACTTGGGTTACTGTTTATGCATTTCATTTAAAAGGGATGAATCACTGTGTAGATGCAGCATTAGCTAATATCAAGTCTGTGGTGATTACTAATAGAAACAAGTTAGCACTTCCAATCATTATGGCATAGTGAATATGTAGAAGAAACAATTATTATCCATTGTTTTGAATTAGTTATGAAGTTGAAGTCAAATTCATTTCTCCTATTAATGAAACAAGACGTCTTTGGTCTTAACTGGATATGTTTCCTTATCAATTTAGTTCTTGGTGAAAGGTCTCAATTCTAATGATCCATGAGACAGATCTGTGTGCAGTCTCTCTGGAGATTTCTCTGAGGCCAGCTTCTTTTGCTGTGTGTTATTTAACTCAACTTTGGAATAAACTATTTCCTCCCCCTTTGCAGCTAGAGTTATTCTGGATCGTGAAACTGGGAGGTCCAGAGGATTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAGGTATGATGTTACTTCTAGTTGGAAAGGTATCCTTGTGAACACAAGCTACACAGATTTTTTTAGCAGTATCTGAAAAAGAAGAACTTGAACAGACCAATATGGATTTCATAGGGAAAGGACATCTTTACTTGTAATGCATATAGTTCAGAGGACAATATTTCACCGAAATCACACTTTGTATCTGCATGGAACAGTGACATCTTTTAGTTTGTTTAATAAATTTCATGAAGTAATTATCGTCATCACTTTACAGAGTAAAACTATTTGTAGAGAGTGAGAATCTTCTTGATAATCCTATCGCTTGTAATTCCACTCGCTTAAATATCTGTATAGCTTACCTGTTGCACCTGTCCCACCAAACGTCCTACCAGTTCCATCTTGGGTTGGGCGATCAATGTGATATTTACTAGCAAATTAAGCTCTCACTGGTCAATTTTGGATTTCTTTTAGTAATGGTGCTAAAGTAATTTATACTTTGTAACTTATTCAGGATCTTCATGGAAGACGGATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGA</genome_strand>
        <mrna_strand>AAAGGTTTAAAGATGGCTTTTCTCAATAAAATTGGGAATATTCTTAAACATGGTGTAGGCAAAAACACAAACTTGGAACTTTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGG...................................................................................GTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGTCATTCTGGATCGTGAAACTGGGAGGTCCAGAGGGTTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCATGGAAGACGCATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539787" ref_strand="+" ref_description="SGN-E539787 [TUS-59-L15]">
      <seq>gaattccaatctaagaacactactaggtgatggttggatccgaaaacataattggaaattccaacatcatgcaatgagctatgagagagctacttggagctctatcctctctttcctcagagatgaagggctatataatccaggctcgaattctatctcgagaactcttctcaaggatagactaaacaacttttatctctcatttgaggatgtctacaagagccagacaggatggtctatcccagatagtcaacttcgtgaagatcttcgaatctcaacatcactcaaggttatccagggatacaggacatttgttggaagacacaccaaccatataagcgacaagcacataaagtatactgcggacgatttggagaacttccttttggatctgtttgagggatctccaagatctttacatggttcccacaggaagtgagctaatcagggatttcttccacacaggcttaatcctcaatcatcatactagtttacatttagatatatctatttttgtaatctaaatgaattcataacttgttgaatgtagaaatttggtgttatgtgcaaaaaggtcaaatgccatgtacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="7964" stop="6771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7664" g_stop="7071" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E539787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7664" e_stop="7071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCAATCTAAGAACACTACTAGGTGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCTCGAGAACTCTTCTCAAGGATAGACTAAACAACTTTTATCTCTCATTTGAGGATGTCTACAAGAGCCAGACAGGATGGTCTATCCCAGATAGTCAACTTCGTGAAGATCTTCGAATCTCAACATCACTCAAGGTTATCCAGGGATACAGGACATTTGTTGGAAGACACACCAACCATATAAGCGACAAGCACATAAAGTATACTGCGGACGATTTGGAGAACTTCCTTTTGGATCTGTTTGAGGGATCTCCAAGATCTTTACATGGTTCCCACAGGAAGTGAGCTAATCAGGGATTTCTTCCACACAGGCTTAATCCTCAATCATCATACTAGTTTACATTTAGATATATCTATTTTTGTAATCTAAATGAATTCATAACTTGTTGAATGTAGAAATTTGGTGTTATGTGCAAAAAGGTCAAATGCCATGTACTTAT</genome_strand>
        <mrna_strand>GAATTCCAATCTAAGAACACTACTAGGTGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCTCGAGAACTCTTCTCAAGGATAGACTAAACAACTTTTATCTCTCATTTGAGGATGTCTACAAGAGCCAGACAGGATGGTCTATCCCAGATAGTCAACTTCGTGAAGATCTTCGAATCTCAACATCACTCAAGGTTATCCAGGGATACAGGACATTTGTTGGAAGACACACCAACCATATAAGCGACAAGCACATAAAGTATACTGCGGACGATTTGGAGAACTTCCTTTTGGATCTGTTTGAGGGATCTCCAAGATCTTTACATGGTTCCCACAGGAAGTGAGCTAATCAGGGATTTCTTCCACACAGGCTTAATCCTCAATCATCATACTAGTTTACATTTAGATATATCTATTTTTGTAATCTAAATGAATTCATAACTTGTTGAATGTAGAAATTTGGTGTTATGTGCAAAAAGGTCAAATGCCATGTACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284617" ref_strand="+" ref_description="SGN-E284617 [cLES-3-H15]">
      <seq>aattccaatctaagaacactactaggtgatggttggatccgaaaacataattggaaattccaacatcatgcaatgagctatgagagagctacttggagctctatcctctctttcctcagagatgaagggctatataatccaggctcgaattctatctcgagaactcttctcaaggatagactaaacaacttttatctctcatttgaggatgtctacaagagccagacaggatggtctatcccagatagtcaacttcgtgaagatcttcgaatctcaacatcactcaaggttatccagggatacaggacatttgttggaagacacaccaaccatataagcgacaagcacataaagtatactgcggacgatttggagaacttccttttggatctgtttgagggatctccaagatctttacatggttcccacaggaagtgagctaatcagggatttcttccacacaggcttaatcctcaatcatcatactagtttacatttagatatatctatttttgtaatctaaatgaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="7963" stop="6831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7663" g_stop="7131" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E284617" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7663" e_stop="7131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCAATCTAAGAACACTACTAGGTGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCTCGAGAACTCTTCTCAAGGATAGACTAAACAACTTTTATCTCTCATTTGAGGATGTCTACAAGAGCCAGACAGGATGGTCTATCCCAGATAGTCAACTTCGTGAAGATCTTCGAATCTCAACATCACTCAAGGTTATCCAGGGATACAGGACATTTGTTGGAAGACACACCAACCATATAAGCGACAAGCACATAAAGTATACTGCGGACGATTTGGAGAACTTCCTTTTGGATCTGTTTGAGGGATCTCCAAGATCTTTACATGGTTCCCACAGGAAGTGAGCTAATCAGGGATTTCTTCCACACAGGCTTAATCCTCAATCATCATACTAGTTTACATTTAGATATATCTATTTTTGTAATCTAAATGAATTCAT</genome_strand>
        <mrna_strand>AATTCCAATCTAAGAACACTACTAGGTGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCTCGAGAACTCTTCTCAAGGATAGACTAAACAACTTTTATCTCTCATTTGAGGATGTCTACAAGAGCCAGACAGGATGGTCTATCCCAGATAGTCAACTTCGTGAAGATCTTCGAATCTCAACATCACTCAAGGTTATCCAGGGATACAGGACATTTGTTGGAAGACACACCAACCATATAAGCGACAAGCACATAAAGTATACTGCGGACGATTTGGAGAACTTCCTTTTGGATCTGTTTGAGGGATCTCCAAGATCTTTACATGGTTCCCACAGGAAGTGAGCTAATCAGGGATTTCTTCCACACAGGCTTAATCCTCAATCATCATACTAGTTTACATTTAGATATATCTATTTTTGTAATCTAAATGAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485876" ref_strand="+" ref_description="SGN-E485876 [cSTE-19-N10]">
      <seq>cgttagaagagagtgccaagacattcttagaagcttgggtgattgtgcaaaggcaacctttctggaatttgaaaatgctgttgcttccagcatatcagccaacccttttcctggtggcgggatacaccatctcacgaggtatgtcatgaactacatgaaaactcttattgattatagcaagacacttgatgagcttctgaagggccatgagaaggaagattcagtgaccattttaccagacatgacacctgatagagaagaagataacacagacagacgctgttacatttctccgctggctcaacattttcgatccttcacttcaattttggaatgcaaccttgaggataaggccaggttatacaaggatgagtcactaggtcaccttttcttaatgaataatattcattacatggctgaaaaggtgaagaattccaatctaagaacaatactaggcgatggttggatccgaaaacataattggaaattccaacatcatgcaatgagctatgagagagctacttggagctctatcctctctttcctcagagatgaagggctatataatccaggctcgaattctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="8393" stop="7207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8093" g_stop="7507" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E485876" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8093" e_stop="7507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGAATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAGACACTTGATGAGCTTCTGAAGGGCCATGAGAAGGAAGAATCAGTGCCCATTTTACCAGACATGACACCTGATAGAGAAGAAGAAAACACAGACAGACGCAGTCACATTTCTCCGCTGGCTCAACATTTTCGATCCTTCACTTCAATCTTGGAGTGCAACCTTGAGGATAAGGCCAGGTTATACAAGGATGAGTCACTAGGTCACCTTTTCTTAATGAATAATATTCATTACATGGCTGAGAAGGTGAAGAATTCCAATCTAAGAACACTACTAGGTGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCT</genome_strand>
        <mrna_strand>CGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGGATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAGACACTTGATGAGCTTCTGAAGGGCCATGAGAAGGAAGATTCAGTGACCATTTTACCAGACATGACACCTGATAGAGAAGAAGATAACACAGACAGACGCTGTTACATTTCTCCGCTGGCTCAACATTTTCGATCCTTCACTTCAATTTTGGAATGCAACCTTGAGGATAAGGCCAGGTTATACAAGGATGAGTCACTAGGTCACCTTTTCTTAATGAATAATATTCATTACATGGCTGAAAAGGTGAAGAATTCCAATCTAAGAACAATACTAGGCGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476362" ref_strand="+" ref_description="SGN-E476362 [cSTB-44-D19]">
      <seq>tgaagccatagctattggccctcatcaaccggagaaattgattcggattcttgacatgtatgaggtgcttgcagatcttatcccagatattgatgctatgtactctgatgaggtggggttatgcgttagaagagagtgccaagacattcttagaagcttgggtgattgtgcaaaggcaacctttctggaatttgaaaatgctgttgcttccagcatatcagccaacccttttcctggtggcgggatacaccatctcacgaggtatgtcatgaactacatgaaaactcttattgattatagcaagacacttgatgagcttctgaatggccatgagaaggaagattcagtgaccattttaccagacatgacacctgatagagaagaagattacacagacagacgctgttacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="8516" stop="7503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8216" g_stop="7803" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E476362" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8216" e_stop="7803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCGGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGGGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGAATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAGACACTTGATGAGCTTCTGAAGGGCCATGAGAAGGAAGAATCAGTGCCCATTTTACCAGACATGACACCTGATAGAGAAGAAGAAAACACAGACAGACGCAGTCACATTTC</genome_strand>
        <mrna_strand>TGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCAGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGTGGGGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGGATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAGACACTTGATGAGCTTCTGAATGGCCATGAGAAGGAAGATTCAGTGACCATTTTACCAGACATGACACCTGATAGAGAAGAAGATTACACAGACAGACGCTGTTACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560097" ref_strand="+" ref_description="SGN-E560097 [19697]">
      <seq>gttctcaagcatttatcaatgtcagaaacgatggcttgtatgattgcctcttcattcttgaagtagagaagttgagcattgaggatgtattgaagatggaatggaactcattgaactccaaaatcaggaggtggatacgggctatgaagatctttgtgcgcatttatcttgccagtgaaaaatggttaagtgatcaaatttttagtgagctggaagcagttggttcagtttgctttgctgaggcctcgaaagcttcaatcttgcagcttctgaactttggtgaagccatagctattggccctcatcaaccggagaaattgattcggattcttgacatgtatgaggtgcttgcagatcttatcccagatattgatgctatgtactctgatgaggtggggttatgcgttagaagagagtgccaagatattcttagaagcttgggtgattgtgcaaaggcaacctttctggaatttgaaaatgctgttgcttccagcatatcagccaacccttttcctggtggcgggatacaccatctcacgaggtatgtcatgaactacatgaaaactcttattgattatagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="8796" stop="7613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8496" g_stop="7913" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E560097" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8496" e_stop="7913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCGGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGGGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGAATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAG</genome_strand>
        <mrna_strand>GTTCTCAAGCATTTATCAATGTCAGAAACGATGGCTTGTATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATTGAGGATGTATTGAAGATGGAATGGAACTCATTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGTTAAGTGATCAAATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCAGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGTGGGGTTATGCGTTAGAAGAGAGTGCCAAGATATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGGATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272624" ref_strand="+" ref_description="SGN-E272624 [cLEM-21-P13]">
      <seq>gcagccttttgagccggagcatatgtcttttcgctccagtgaagatgatacgttggatgatggctcgattgtgtcgtttggggatgactcgattgaggatgtggttcaaagagatagcatgagtaggagttcaggggagtacatcattgaactggtgcatccagatgttattcctgacctaagatgcattgccaatttgatgtttgattcaaattatggccgggaatgttctcaagcatttatcaatgtcagaaaagatggcttggatgattgcctcttcattcttgaagtagagaagttgagcatcgaggatgtattgaagatggaatggaactcgttgaactccaaaatcaggaggtggatacgggctatgaagatctttgtgcgcatttatcttgccagtgaaaaatggctaagtgatcagatttttagtgagctggaagcagttggttcagtttgctttgctgaggcctcgaaagcttcaatcttgcagcttctgaactttggtgaagccatagctattggccctcatcaaccggagaaattgattcggattcttgacatgtatgaggtgcttgcggatcttatcccagatattgatgctatgtactctgatgaggcggngttatgcgttagaagagagtgccaagacattcttagaagcttgggtgattgtgcaaggcaacctttctggaattgaaaatgctgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="9023" stop="7709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8723" g_stop="8009" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E272624" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8723" e_stop="8009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCTTTTGAGCCGGAGCATATGTCTTTTCGCTCCAGTGAAGATGATACGTTGGATGATGGCTCGATTGTGTCGTTTGGGGATGACTCGATTGAGGATGTGGTTCAAAGAGATAGCATGAGTAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCGGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGGGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCT</genome_strand>
        <mrna_strand>GCAGCCTTTTGAGCCGGAGCATATGTCTTTTCGCTCCAGTGAAGATGATACGTTGGATGATGGCTCGATTGTGTCGTTTGGGGATGACTCGATTGAGGATGTGGTTCAAAGAGATAGCATGAGTAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCGGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGNGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGC-AAGGCAACCTTTCTGGAA-TTGAAAATGCTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604158" ref_strand="+" ref_description="SGN-E604158 [67350]">
      <seq>gttcaaagagatagcatgagcaggagttcaggggagtacatcattgaactggtgcatccagatgttattcctgacctaagatgcattgccaatttgatgtttgattcaaattatggccgggaatgttctcaagcatttatcaatgtcagaaaagatggcttggatgattgcctcttcattcttgaagtagagaagttgagcattgaggatgtattgaagatggaatggaactcgttgaactccaaaatcaggaggtggatacgggcaatgaagatctttgtgcgcatttatcttgccagtgaaaaatggctaagtgatcagatttttagcgagctggaagcagttggttcagtttgctttgctgaggcctcgaaagcttcaatcttgcagcttctgaactttggtgaagccatagctattggccctcatcaaccggagaaattgattcggattcttgacatgtatgaggtgcttgcagatcttatcccagatattgatgctatgtactctgatgaggcggggttatgcgttagaaaagagtgccaagacattcttagaagcttgggtgaatgtgcaaagggcaactttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="8920" stop="7728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8620" g_stop="8028" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E604158" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8620" e_stop="8028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGAGATAGCATGAGTAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCGGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGGGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGA</genome_strand>
        <mrna_strand>GTTCAAAGAGATAGCATGAGCAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATTGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCAATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGCGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCAGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGGGTTATGCGTTAGAAAAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGAATGTGCAAAGGGCAACTTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328401" ref_strand="+" ref_description="SGN-E328401 [cTOC-21-D17]">
      <seq>gcttatgagtatttgaggtatgtggatcaaggtcgaaaattgattgagagattggagagtttgaacttggttaaaggtagtaaagaagatgagcttctgcgtagggctactgatcttctgcaaacagcaatgaatcgtcttgaggaggagtttacgcatttgcttgttcacaacaggcagccttttgagccggagcatatgtcttttcgctccagtgaagatgatacgttggatgatggctcgattgtgtcgtttggggatgactcgattgaggatgtggttcaaagagatagcatgagtaggagttcaggggagtacatcattgaactggtgcatccagatgttattcctgacctaagatgcattgccaatttgatgtttgattcaaattatggccgggaatgttctcaagcatttatcaatgtcagaaaagatggcttggatgattgcctcttcattcttgaagtagagaagttgagcatcgaggatgtattgaagatggaatggaactcgttgaactccaaaatcaggaggtggatacgggctatgaagatctttgtgcgcatttatcttgccagtgaaaaatggctaagtgatcagatttttagtgagctggaagcagttggttcagtttgctttgctgaggcctcgaaagcttcatcttgcagcttctgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="9199" stop="7918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8899" g_stop="8218" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E328401" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8899" e_stop="8218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGAGTATTTGAGGTATGTGGATCAAGGTCGAAAATTGATTGAGAGATTGGAGAGTTTGAACTTGGTTAAAGGTAGTAAAGAAGATGAGCTTCTGCGTAGGGCTACTGATCTTCTGCAAACAGCAATGAATCGTCTTGAGGAGGAGTTTACGCATTTGCTTGTTCACAACAGGCAGCCTTTTGAGCCGGAGCATATGTCTTTTCGCTCCAGTGAAGATGATACGTTGGATGATGGCTCGATTGTGTCGTTTGGGGATGACTCGATTGAGGATGTGGTTCAAAGAGATAGCATGAGTAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTG</genome_strand>
        <mrna_strand>GCTTATGAGTATTTGAGGTATGTGGATCAAGGTCGAAAATTGATTGAGAGATTGGAGAGTTTGAACTTGGTTAAAGGTAGTAAAGAAGATGAGCTTCTGCGTAGGGCTACTGATCTTCTGCAAACAGCAATGAATCGTCTTGAGGAGGAGTTTACGCATTTGCTTGTTCACAACAGGCAGCCTTTTGAGCCGGAGCATATGTCTTTTCGCTCCAGTGAAGATGATACGTTGGATGATGGCTCGATTGTGTCGTTTGGGGATGACTCGATTGAGGATGTGGTTCAAAGAGATAGCATGAGTAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTC-ATCTTGCAGCTTCTGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737079" ref_strand="+" ref_description="SGN-E737079 [LC08BF08]">
      <seq>ctttccactgttaaaaaaagagtcagttcctctctgcttcatatatggatcttgtttgctgatttgttctctttctgcatattcaagatttgagctttgaggtttgtgcattttcactttcctctgtttcttgcttctacttctgaccagtgttttcttcatcctcaaatctcccactttagttaacctaaagtttgctgcttttgtcttcttatcttatacccagccgcctctttttttttttaaattgccctcaaaaggggtttgggttaactcttacagtagttgatctttgcaggggacaaataatatttcttggggaagttctttcttgattgaaatttcttgggaatttcgtaaaagttaaaaagttgcagtctttacctgtttaggattaagcttgagctagtttcttggtttttgaatttatatgggaaactgtgaatcttcagtccccttaatggaaaaaaaaaaaaaaaacctattacctgctgcacaaaaaattgtgaaagcgtgggggtcaaataggactttaacggatgatgctaggaaaattttagctgatctaggttcccaattgccttctataactaaagtgagtgaacccaaaaatgagggagctggtgaaactgaggaccaccttattgagctggaggaggacctaattttagtgcaaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="9935" stop="8655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9636" g_stop="8955" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E737079" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9636" e_stop="8955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCACTGTTAAAAAAAGAGTCAGTTCCTCTCTGCTTCATATATGGATCTTGTTTGCTGATTTGTTCTCTTTCTGCATATTCAAGATTTGAGCTTTGAGGTTTGTGCATTTTCACTTTCCTCTGTTTCTTGCTTCTACTTCTGACCAGTGTTTTCTTCATCCTCAAATCTCCCACTTTAGTTAACCTAAAGTTTGCTGCTTTTGTCTTCTTATCTTATACCCAGCCGCCTCTTTTTTTTTTTTAGATTGCCCTCGAAAGGGGTTTGGGTTAACTCTTACAGTAGTTGATCTTTGCAGGTGACAGATAATATTTCTTGGTGAAGTTCTTTCTTGATTGTAATTTCTTGGGTATTTCGTAGAAGTTAAAAAGTTGCAGTCTTTACCTGTTTAGGATTAAGCTTGAGCTAGTTTCTTGGTTTTTGAATTTATATGGGAGACTGTGAATCTTCAGTCCCCTTAATGGAAGAAGAAGAAGAAAACCTAATAGCTGCTGCACAGAAAATTGTGAAAGCGTTGGGGTCAAATAGGACTTTAACGGATGATGCTAGGAAAATTTTAGCTGATCTAGGTTCCCAATTGTCTTCTATAACTAGAGTGAGTGAACCCGAAGATGAGGGAGCTGGTGAAACTGAGGAGCAGCTTATTGAGCTGGAGGAGGAGCTGAATTTAGTGCAGAGTAA</genome_strand>
        <mrna_strand>CTTTCCACTGTTAAAAAAAGAGTCAGTTCCTCTCTGCTTCATATATGGATCTTGTTTGCTGATTTGTTCTCTTTCTGCATATTCAAGATTTGAGCTTTGAGGTTTGTGCATTTTCACTTTCCTCTGTTTCTTGCTTCTACTTCTGACCAGTGTTTTCTTCATCCTCAAATCTCCCACTTTAGTTAACCTAAAGTTTGCTGCTTTTGTCTTCTTATCTTATACCCAGCCGCCTC-TTTTTTTTTTTAAATTGCCCTCAAAAGGGGTTTGGGTTAACTCTTACAGTAGTTGATCTTTGCAGGGGACAAATAATATTTCTTGGGGAAGTTCTTTCTTGATTGAAATTTCTTGGGAATTTCGTAAAAGTTAAAAAGTTGCAGTCTTTACCTGTTTAGGATTAAGCTTGAGCTAGTTTCTTGGTTTTTGAATTTATATGGGAAACTGTGAATCTTCAGTCCCCTTAATGGAAAAAAAAAAAAAAAACCTATTACCTGCTGCACAAAAAATTGTGAAAGCGTGGGGGTCAAATAGGACTTTAACGGATGATGCTAGGAAAATTTTAGCTGATCTAGGTTCCCAATTGCCTTCTATAACTAAAGTGAGTGAACCCAAAAATGAGGGAGCTGGTGAAACTGAGGACCACCTTATTGAGCTGGAGGAGGACCTAATTTTAGTGCAAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734085" ref_strand="+" ref_description="SGN-E734085 [LB11DA03]">
      <seq>cttgcacggagaagtatgcagaaatttactacaacaggcctgatgtgcagaaagctatgcacgcgaatacaacaagaattccttataaatggacagcctgcagtgagacattgaatcgaaactggaatgatacagatgactcgattctcccaatctaccaggaactaattgctgctggattgagaatttgggttttcagtggtgatgtagactcagttgtacccgttaccgcgacaaggtattccctagcacagctcaagttatctaccacaactccatggtatccttggtatgtcaaaaaacaggttgggggctggacagaggtatacaaaggtctaacatttgcaacagtgagaggggcaggtcatgaagtgccattattcaagccaagggcagcttatcaactatttagatcatttttaaaaggagagccacttccaaagtcatgattgttgtgacattataaattatactattattagtattatgtatgcttcaaaaatgtcaattgtttctactcttaggctaagaattaaagagttgccaagttgaaagaaaagaattgtttcaacttttaaaagagaattgatggaaaaagggagattacaataggactttgggttggggaaaaaaaaaggtatcaatttgttgtaacaatattaggtaggtgtggtttgaagtctacctcacgtgttttaggaaaatgaattttctttatatttcgtatttcaataaaaagggattagaattcttattannnnanantaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="15143" stop="13553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14843" g_stop="14741" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14740" i_stop="14672" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14671" g_stop="14576" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="199" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14575" i_stop="14501" i_length="75">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14500" g_stop="14395" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="305" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14394" i_stop="14305" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14304" g_stop="13850" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="760" r_length="455" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13849" i_stop="13639" i_length="211">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.859" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13638" g_stop="13626" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="773" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E734085" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14843" e_stop="14741"/>
          <exon e_start="14671" e_stop="14576"/>
          <exon e_start="14500" e_stop="14395"/>
          <exon e_start="14304" e_stop="13850"/>
          <exon e_start="13638" e_stop="13626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCACGGAGAAGTATGCAGAAATTTACTACAACAGGCCTGATGTGCAGAAAGCTATGCACGCGAATACAACAAGAATTCCTTATAAATGGACAGCCTGCAGGTAAATAATTTGTCTTCCAAACTCCCACTATGTTGATTGATCTTACAACTGATTGATATATGTTTACAGTGAGACATTGAATCGAAACTGGAATGATACAGATGACTCGATTCTCCCAATCTACCAGGAACTAATTGCTGCTGGATTGAGAATTTGGGTTTTCAGGTATGTGACATTGAGTTGAAAACATTTTCCCAAAATTCCAGGGCAACTCCATTTGATCATTTTTTTGTTTTGCAGTGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCCCTAGCACAGCTCAAGTTATCTACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAGGTGAGTAATGTAAAAAAAAAACGAATTCTAGTTTTCCATGATCACTTATATTGATTAACAACTTAATTATTATGTTATGGTTATTGTAAGGTTGGGGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTGAGAGGGGCAGGTCATGAAGTGCCATTATTCAAGCCAAGGGCAGCTTATCAACTATTTAGATCATTTTTAAAAGGAGAGCCACTTCCAAAGTCATGATTGTTGTGACATTATAAATTATACTATTATTAGTATTATGTATGCTTCAAAAATGTCAATTGTTTCTACTCTTAGGCTAAGAATTAAAGAGTTGCCAAGTTGAAAGAAAAGAATTGTTTCAACTTTTAAAAGAGAATTGATGGAAAAAGGGAGATTACAATAGGACTTTGGGTTGGGGAAAAAAAAAGGTATCAATTTGTTGTAACAATATTAGGTAGGTGTGGTTTGAAGTCTACCTCACGTGTTTTAGGAAAATGAATTTTCTTTATATTTCGTATTTCAATAAAAAGGGATTAGAATTCTTATTAGTAGTATAATCTCTTCCATCCATCTTTATTTGTTTATATTCTATTTTATTTAATAAATATAATTTTACATTTATTCATTATAAATTATTTAAATAATATAATAATCTCTTAATAATTCAAATTCAAACTATAAAGAGAATATTGAATTTGGGTCTTCATCACAATGTGGACCCATTATAAATTAGAATAATTACACAAATGGTCCTTTTTTTAGGCCACTAACATAA</genome_strand>
        <mrna_strand>CTTGCACGGAGAAGTATGCAGAAATTTACTACAACAGGCCTGATGTGCAGAAAGCTATGCACGCGAATACAACAAGAATTCCTTATAAATGGACAGCCTGCAG.....................................................................TGAGACATTGAATCGAAACTGGAATGATACAGATGACTCGATTCTCCCAATCTACCAGGAACTAATTGCTGCTGGATTGAGAATTTGGGTTTTCAG...........................................................................TGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCCCTAGCACAGCTCAAGTTATCTACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAG..........................................................................................GTTGGGGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTGAGAGGGGCAGGTCATGAAGTGCCATTATTCAAGCCAAGGGCAGCTTATCAACTATTTAGATCATTTTTAAAAGGAGAGCCACTTCCAAAGTCATGATTGTTGTGACATTATAAATTATACTATTATTAGTATTATGTATGCTTCAAAAATGTCAATTGTTTCTACTCTTAGGCTAAGAATTAAAGAGTTGCCAAGTTGAAAGAAAAGAATTGTTTCAACTTTTAAAAGAGAATTGATGGAAAAAGGGAGATTACAATAGGACTTTGGGTTGGGGAAAAAAAAAGGTATCAATTTGTTGTAACAATATTAGGTAGGTGTGGTTTGAAGTCTACCTCACGTGTTTTAGGAAAATGAATTTTCTTTATATTTCGTATTTCAATAAAAAGGGATTAGAATTCTTATTANNN...................................................................................................................................................................................................................NANANTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411530" ref_strand="-" ref_description="SGN-E411530 [STM-14-H16]">
      <seq>agatgactcgattctcccaatctaccgggaactaattgctgctggattgagaatatgggttttcagtggtgatgtagactcagttgtacccgttaccgcgacaaggtattcactagcacagctcaagttatccaccacaactccatggtatccttggtatgtcaaaaaacaggtgggaggctggacagaggtatacaaaggtctaacatttgcaacagtaagaggggcaggtcatgaagtgccattattcaagccaagggcagcttatcaactatttagatcatttttaaaaggagagccacttcccaagtcatgatagttgtgacattataattattactatctatggttcaaaaatgtcaattgtttccactcttggctaagaattaaagagtgcaaagttgaaagaagaattgtttcaacttttaaaagagaattgatgggaaaaagggagattacaataggactttgggttgggaaaaaaaaaggtatcaatttgttgtaacaatattaggtagctgtggtttgaattctactcaacgtgtattaggaaaatgaattttctttatgtttcgtatttcaataaaaaggggttgaattcttattacttatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="14941" stop="13544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14641" g_stop="14576" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14575" i_stop="14501" i_length="75">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14500" g_stop="14395" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="172" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14394" i_stop="14305" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14304" g_stop="13853" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="607" r_length="435" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="628"/>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E411530" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411530" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14641" e_stop="14576"/>
          <exon e_start="14500" e_stop="14395"/>
          <exon e_start="14304" e_stop="13853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGACTCGATTCTCCCAATCTACCAGGAACTAATTGCTGCTGGATTGAGAATTTGGGTTTTCAGGTATGTGACATTGAGTTGAAAACATTTTCCCAAAATTCCAGGGCAACTCCATTTGATCATTTTTTTGTTTTGCAGTGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCCCTAGCACAGCTCAAGTTATCTACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAGGTGAGTAATGTAAAAAAAAAACGAATTCTAGTTTTCCATGATCACTTATATTGATTAACAACTTAATTATTATGTTATGGTTATTGTAAGGTTGGGGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTGAGAGGGGCAGGTCATGAAGTGCCATTATTCAAGCCAAGGGCAGCTTATCAACTATTTAGATCATTTTTAAAAGGAGAGCCACTTCCAAAGTCATGATTGTTGTGACATTATAAATTATACTATTATTAGTATTATGTATGCTTCAAAAATGTCAATTGTTTCTACTCTTAGGCTAAGAATTAAAGAGTTGCCAAGTTGAAAGAAAAGAATTGTTTCAACTTTTAAAAGAGAATTGAT-GGAAAAAGGGAGATTACAATAGGACTTTGGGTTGGGGAAAAAAAAAGGTATCAATTTGTTGTAACAATATTAGGTAGGTGTGGTTTGAAGTCTACCTCACGTGTTTTAGGAAAATGAATTTTCTTTATATTTCGTATTTCAATAAAAAGGGATTAGAATTCTTATTA</genome_strand>
        <mrna_strand>AGATGACTCGATTCTCCCAATCTACCGGGAACTAATTGCTGCTGGATTGAGAATATGGGTTTTCAG...........................................................................TGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCACTAGCACAGCTCAAGTTATCCACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAG..........................................................................................GTGGGAGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTAAGAGGGGCAGGTCATGAAGTGCCATTATTCAAGCCAAGGGCAGCTTATCAACTATTTAGATCATTTTTAAAAGGAGAGCCACTTCCCAAGTCATGATAGTTGTGACATTAT-AATTAT--TACTA-T-CTA-T--G---G-TTCAAAAATGTCAATTGTTTCCACTCTT-GGCTAAGAATTAAAGAG-TGCAAAGTTGAAAG--AAGAATTGTTTCAACTTTTAAAAGAGAATTGATGGGAAAAAGGGAGATTACAATAGGACTTTGGGTT-GGGAAAAAAAAAGGTATCAATTTGTTGTAACAATATTAGGTAGCTGTGGTTTGAATTCTACTCAACGTGTATTAGGAAAATGAATTTTCTTTATGTTTCGTATTTCAATAAAAAGGGGTT-GAATTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411529" ref_strand="+" ref_description="SGN-E411529 [STM-14-H16]">
      <seq>gaacacttgtgatttcaaacgccataaagaatcaaacgagtgtgaatcattgtactattacgcgatggatcaagaatttgggaacatcgatcagtacaatatttatgctcctccttgtaacaattctgatggtagcagttcaactaggcagaccatgaatttaccccaccgaccttacaagatgttcaagcagctatcaggttatgatccttgcacggagaagtatgcagaaatttactacaacaggcctgatgtgcagaaggctatgcacgcgaatacaacaggaattccttataaatggacagcctgcagtgagacattgaatcgaaactggaacgatacagatgactcgattctcccaatctaccgggaactaattgctgctggattgagaatatgggttttcagtggtgatgtagactcagttgtacccgttaccgcgacaaggtattcactagcacagctcaagttatccaccacaactccatggtatccttggtatgtcaaaaaacaggtgggaggctggacagaggtatacaaaggtctaacatttgcaacagtaagaggggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="15432" stop="13947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15133" g_stop="14953" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14952" i_stop="14872" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14871" g_stop="14741" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="312" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14740" i_stop="14672" i_length="69">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14671" g_stop="14576" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="408" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14575" i_stop="14501" i_length="75">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14500" g_stop="14395" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="514" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14394" i_stop="14305" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14304" g_stop="14247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="572" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E411529" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15133" e_stop="14953"/>
          <exon e_start="14871" e_stop="14741"/>
          <exon e_start="14671" e_stop="14576"/>
          <exon e_start="14500" e_stop="14395"/>
          <exon e_start="14304" e_stop="14247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTGTGATTTCAAACGCCATAAAGAATCAAACGAGTGTGAGTCATTGTACTACTATGCGATGGATCAAGAATTTGGGAACATCGATCAGTACAATATTTATGCTCCTCCTTGTAACAATTCTGATGGTAGCACTTCAACTAGACAGACCATGAATTTACCCCACCGACCTTACAAGGTACATATGTGTAACACAACATGAAAAATGCAACATTTTGTAATGTATACTAAAGAGATTTTTTGGATTTCCATCAATTAGATGTTTAAGCAGCTATCAGGTTATGATCCTTGCACGGAGAAGTATGCAGAAATTTACTACAACAGGCCTGATGTGCAGAAAGCTATGCACGCGAATACAACAAGAATTCCTTATAAATGGACAGCCTGCAGGTAAATAATTTGTCTTCCAAACTCCCACTATGTTGATTGATCTTACAACTGATTGATATATGTTTACAGTGAGACATTGAATCGAAACTGGAATGATACAGATGACTCGATTCTCCCAATCTACCAGGAACTAATTGCTGCTGGATTGAGAATTTGGGTTTTCAGGTATGTGACATTGAGTTGAAAACATTTTCCCAAAATTCCAGGGCAACTCCATTTGATCATTTTTTTGTTTTGCAGTGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCCCTAGCACAGCTCAAGTTATCTACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAGGTGAGTAATGTAAAAAAAAAACGAATTCTAGTTTTCCATGATCACTTATATTGATTAACAACTTAATTATTATGTTATGGTTATTGTAAGGTTGGGGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTGAGAGGGGCAG</genome_strand>
        <mrna_strand>GAACACTTGTGATTTCAAACGCCATAAAGAATCAAACGAGTGTGAATCATTGTACTATTACGCGATGGATCAAGAATTTGGGAACATCGATCAGTACAATATTTATGCTCCTCCTTGTAACAATTCTGATGGTAGCAGTTCAACTAGGCAGACCATGAATTTACCCCACCGACCTTACAAG.................................................................................ATGTTCAAGCAGCTATCAGGTTATGATCCTTGCACGGAGAAGTATGCAGAAATTTACTACAACAGGCCTGATGTGCAGAAGGCTATGCACGCGAATACAACAGGAATTCCTTATAAATGGACAGCCTGCAG.....................................................................TGAGACATTGAATCGAAACTGGAACGATACAGATGACTCGATTCTCCCAATCTACCGGGAACTAATTGCTGCTGGATTGAGAATATGGGTTTTCAG...........................................................................TGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCACTAGCACAGCTCAAGTTATCCACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAG..........................................................................................GTGGGAGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTAAGAGGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469010" ref_strand="+" ref_description="SGN-E469010 [cSTB-10-K11]">
      <seq>acacttgtgatttcaaaccgccataaagaatcaaacgagtgtgaatcattgtactattaccccgaggatcaagaatttgggaacatcgatcagtacaatatttatgctcctccttgtaacaattctgatggtagcagttcaactaggccgaccatgaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="15431" stop="14671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="14971" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E469010" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="14971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGTGATTTCAAA-CGCCATAAAGAATCAAACGAGTGTGAGTCATTGTACTACTATGCGATGGATCAAGAATTTGGGAACATCGATCAGTACAATATTTATGCTCCTCCTTGTAACAATTCTGATGGTAGCACTTCAACTAGACAGACCATGAATTTA</genome_strand>
        <mrna_strand>ACACTTGTGATTTCAAACCGCCATAAAGAATCAAACGAGTGTGAATCATTGTACTATTACCCCGAGGATCAAGAATTTGGGAACATCGATCAGTACAATATTTATGCTCCTCCTTGTAACAATTCTGATGGTAGCAGTTCAACTAGGCCGACCATGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326199" ref_strand="+" ref_description="SGN-E326199 [cTOC-16-F13]">
      <seq>tcatcacctcattgctattcacacacaaatagcaaatttctttatttctttcagtttctcaacaacaataatatggccaaacgaagattagctttgcttttgattttagcaacaattgtatgtgtgagtgctgcaaagttaaacaaatatcaggatgaagaagacgctgatagaataatatcgctgcctggacaacccaaagtttcgttccatcagtactcagggtatgtcactgtcaatcagtttgctggaagagctctattttactggcttactgaagctattgatgaaccacttactaagcctttggttatttggcttaatggaggtccaggatgctcttcagtggcctatggtgcatctgaagaaatagggccattcaggataaacaagacggcttcgggactgtatttgaataagttttcatggaacaaattggcaaatttactattccttgaaactccagcaggggttggattttcctacagcaataggtcctctgatctccttgacaccggggatattcgcactgctaaggactcacttcagttccttatccactggatgaatcggttcccacgctacagaaatcgtgaagtctacatcacaggggagagctatgctggtcattatgtccctcagctagccagagaaatagttcattacaatggcaactctnagaaccaatcaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="19468" stop="15043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19168" g_stop="18841" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18840" i_stop="16814" i_length="2027">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16610" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="532" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16609" i_stop="15507" i_length="1103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15506" g_stop="15343" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="695" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E326199" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19168" e_stop="18841"/>
          <exon e_start="16813" e_stop="16610"/>
          <exon e_start="15506" e_stop="15343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCTCATTGCTATTCACACACAAATAGCAAATTTCTTTATTTCTTTCAGTTTCTCAACAACAATAATATGGCCAAACGAAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAATGGAGGTCAGATCTCTCTTAAATTTCTACGTGAAAAGTTCCTTTCTATTTTTTTCTATGTTTGATTTTACTTGTTATATTTCATTTTTAGTGTATGATCGATCGTTAATTTTGATGAAAAAGTAAAAATGGAGGAGATAATAACTATTTTTGGCGCATACGCCCCGTATCCTCAAGGTCTAATGTCTGACACATACATAACTTCTTCGGGAAATGGAACACTAATTATGATTACGTGAACTTCTGGTTACTGTTCTATTCATCCTTCCTTTTCTTCTTTTTCCTGTGACTAAAAAGGACTTAAAAGAAAAGGTTTCTATTTCTTTTAACTATATGTTTCTGTTTAAAACAGCGATTATTCAATTTAGTTGGATTTTAATATGAAACTGAGATCGAGAGAAAAGTCTCACTCGTTATTGATTATGTGTTTTGACTCATACATACATTATGTGTTGTGCATTTAAAAGTCATTTTGTCGGTTAATTATTGAGGGTTTTTAGCTTAGGTATTTGATAGTTGAGTACTGGGAAAGGGGGGGCCGTTTAGTTTAGTCATGACTAAACTGTCGACTGATATGGTTCATTATCCATGAACAGATAAGACATTATCTTTGCCAGTTGCTATTTCTCTCTCTCTCTCTCTTCACATTAATATTTGCACGCAGTGAAAATCAATGCTGTTACAACCAACTCCTCATTTAATTTTTCAACTTCATTTCGTGCCCAGACTGGTCTAACATAGATGCCCACACCAATTACGCTTCCGCAACCACCTTCCCCATGTCAGCTACCTAACAGCCTCCTTAAAAACATATTCGAATTTTAAATTTCATAAGTTCAATCATTACCTCTCAAAACTATTGAATTCAGTTGAACTGTGTGATGCATTGGTTATGGGCATGATGCTCTTCGCACAGGACATAGGTTGGATCTTAATGACGAAGCCAATGATTTAAATAAGGGGATTGGATTCACAGAGTAATATAATTTTTATCTTTTTAAGTGTAAAATTATAGGTATTGAGCCTCACGCCCCCGAAATTTAGCCTGAAGGGAGAAGGATTACCAAGTTTTAAATGAGGTCATCCATGTGAGCCTTTTTAATTCGTTAACATATATTTCACGCCTAATGCTGGGCATCTGGTACAAAATTCGAGGCCCAACATCGAGTAAAATAAGTCATACTCTCTGCTACTTATAAAATTATGTATAGTACGTATTCATATTCCAAAAAAAGATTATACTAGCCTTATAAAGAGGTCCCATCTCATGTATAACTTTTTCATTCTTTTAAGGCAAGGATACTTTAACTAATGGATTTGAACAATTTTAATACATGCAAATAGATAATAGTAATATTTTATACCCTTATTTTCATCACTATTATAGTAATATTTCAACAAAGGAGTTCCGTTGCATCCCTGCCCCTGACCTCAGAAATAAGGTGTCTTCAAATGAGAATAGGAAAGATTCTTTACCGTGAATTATGTTGATAACATTAAATTGTAGCCAACTAAACTTAGTACTGTTTGGGATCTGTCGTCATTTTCTTATAAATGAGGTTTTAATTTCTTGACCATATTGTTCATTATTAGATACATGTGCTCATCTCAACTGTATGTGATAAAGGAGCTAGACACACTCTTCTGCGGGGACCCCTTATATTTTTTTAGTCCTAGTAATTTCTGCTACTACTTCAGATTTCTGGACTGACACTCTGATAAAAATTTTAACCATAGGTGAATTCAAGATGTACATGTGACGTCTTTAAACTTTAAAGTTTTCAATATTTAATTCATTCTACATTTGAAATTCTTCTAATGTAGCTAACCAACTGAGTTACTAAAAAATCATTACTTTAGAGCACCAAAAGCTTGGAATGACGAGAAACTTGAACTCATAAGTTTTAAATTTTAGTTCCGTCTCTGCTTTGTAATAAGCATGATCTACTGAAAAAACTGGATGATATAAATTGTTATAGATAATATTGTGCGGATTGTGTAAAAAACTGAGTAATTTATATTGGGAAAAACAGGTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTGGTACGAACATATTGTTGACTTTGATTAAGCCCTCTCTTTTATCTTGTTGCTAATTAAATTATTTTTTTTCTTAGCTTAGAAATGTCTCAAATCTGAAGACTGATTGACCATGGATTTGTAGTCATATTTGGGGTGCTTATTCTAACTCCTAATGTAGTAAACATGAAAGTGATGGATGCATACCTGCCCCTGAGTAAACGTGACAAATGAACAAGGTTTTTGGATTTAAATGGGTTAATTAATATATCATAACGCAATTCGCTCAATGTGTGACCCGACCTTCTCTCTTTTTCCCTGTTTGGATGGACTTATTTTAAGTGATTTTATGTTTAAATAGCGTTTAACCATTTTTTGTACAGTTTGTGAAAATTCAGGAAAGTATTCTTAAGCTGAATAATTACAAGTTAGTATTTTTAACTTATGACTTATATGCAATAGCCGTTTTTTGCTTATAAGTCATAAGCTATAAGTCTATCCAACCAGTTACATTAATCAAGTCAACGATTACGACTGGATCATAATGCAATCCATTTAAACTTGAACGGATGGAACATGTTAGTAAAACAAATTAATCATATTTGCTTGCTTATTCTCTAATAACTACTAATCTAGTATAAAACTGAAGTGATGGTGGCATGCTTGCTCATGACTTTTCCTCTGTGTAATCAATTGTGTCAAAAGTGCCCATTTTAGGAGCACATGAGAAAGTGCATTTTAGCACTCAATTGCAATGTGGCCTACTTTATGATTTTTGGAGTCAATGCTGCAAGTGTTAGCTACCTTACATGTTGCTATCTGGAGTCAATTTTACTATCACCACTATAGTACTATTCAATCAATCAAACAGCTAAATATTCGCCACTGAAACGAAAATCTTCTCCAAGTAATTGATTTGACTTAATCGTTGAAATATATTATGCGACTTGAGTGCTTGATCATATTAGTACTCTGTTCTGTCTTGTCCTATCGATTTGGAAAAACCTTATCCGCACCTGTTTTTTGCACTAACTTTGTTAATTTATTGTAGTTAAGTGATTAATTCATATGGGTATATACATGATTAATTTGAATGAGATGCTGACTCTTTTGTGTATTTTTATCAGCTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGTTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCCTCAGCTAGCCAGAGAAATAGTTCATTACAATGCCAACTCTAAGAACCCAATCAACCTC</genome_strand>
        <mrna_strand>TCATCACCTCATTGCTATTCACACACAAATAGCAAATTTCTTTATTTCTTTCAGTTTCTCAACAACAATAATATGGCCAAACGAAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGTTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCCTCAGCTAGCCAGAGAAATAGTTCATTACAATGGCAACTCTNAGAA-CCAATCAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314641" ref_strand="+" ref_description="SGN-E314641 [cTOA-20-P13]">
      <seq>taacactcccgcccttgatgacctatatcatcacctcattgctattcacacacaaatagcaaatttctttatttctttcagtttctcaacaacaataatatggccaaacgaagattagctttgcttttgattttagcaacaattgtatgtgtgagtgctgcaaagttaaacaaatatcaggatgaagaagacgctgatagaataatatcgctgcctggacaacccaaagtttcgttccatcagtactcagggtatgtcactgtcaatcagtttgctggaagagctctattttactggcttactgaagctattgatgaaccacttactaagcctttggttatttggcttaatggaggtccaggatgctcttcagtggcctatggtgcatctgaagaaatagggccattcaggataaacaagacggcttcgggactgtatttgaataagttttcatggaacaaattggcaaatttactattccttgaaactccagcaggggttggattttcctacagcaataggtcctctgatctccttgacaccggggatattcgcactgctaaggactcacttcagttccttatccactggatgaatcggttcccacgctacagaaatcgtgaagtctacatcacaggggagagctatgctggtcattatgtccctcagctagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="19495" stop="15091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19195" g_stop="18841" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18840" i_stop="16814" i_length="2027">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16610" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="559" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16609" i_stop="15507" i_length="1103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15506" g_stop="15391" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="675" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E314641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19195" e_stop="18841"/>
          <exon e_start="16813" e_stop="16610"/>
          <exon e_start="15506" e_stop="15391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCCCGCCCTTGATGACCTATATCATCACCTCATTGCTATTCACACACAAATAGCAAATTTCTTTATTTCTTTCAGTTTCTCAACAACAATAATATGGCCAAACGAAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAATGGAGGTCAGATCTCTCTTAAATTTCTACGTGAAAAGTTCCTTTCTATTTTTTTCTATGTTTGATTTTACTTGTTATATTTCATTTTTAGTGTATGATCGATCGTTAATTTTGATGAAAAAGTAAAAATGGAGGAGATAATAACTATTTTTGGCGCATACGCCCCGTATCCTCAAGGTCTAATGTCTGACACATACATAACTTCTTCGGGAAATGGAACACTAATTATGATTACGTGAACTTCTGGTTACTGTTCTATTCATCCTTCCTTTTCTTCTTTTTCCTGTGACTAAAAAGGACTTAAAAGAAAAGGTTTCTATTTCTTTTAACTATATGTTTCTGTTTAAAACAGCGATTATTCAATTTAGTTGGATTTTAATATGAAACTGAGATCGAGAGAAAAGTCTCACTCGTTATTGATTATGTGTTTTGACTCATACATACATTATGTGTTGTGCATTTAAAAGTCATTTTGTCGGTTAATTATTGAGGGTTTTTAGCTTAGGTATTTGATAGTTGAGTACTGGGAAAGGGGGGGCCGTTTAGTTTAGTCATGACTAAACTGTCGACTGATATGGTTCATTATCCATGAACAGATAAGACATTATCTTTGCCAGTTGCTATTTCTCTCTCTCTCTCTCTTCACATTAATATTTGCACGCAGTGAAAATCAATGCTGTTACAACCAACTCCTCATTTAATTTTTCAACTTCATTTCGTGCCCAGACTGGTCTAACATAGATGCCCACACCAATTACGCTTCCGCAACCACCTTCCCCATGTCAGCTACCTAACAGCCTCCTTAAAAACATATTCGAATTTTAAATTTCATAAGTTCAATCATTACCTCTCAAAACTATTGAATTCAGTTGAACTGTGTGATGCATTGGTTATGGGCATGATGCTCTTCGCACAGGACATAGGTTGGATCTTAATGACGAAGCCAATGATTTAAATAAGGGGATTGGATTCACAGAGTAATATAATTTTTATCTTTTTAAGTGTAAAATTATAGGTATTGAGCCTCACGCCCCCGAAATTTAGCCTGAAGGGAGAAGGATTACCAAGTTTTAAATGAGGTCATCCATGTGAGCCTTTTTAATTCGTTAACATATATTTCACGCCTAATGCTGGGCATCTGGTACAAAATTCGAGGCCCAACATCGAGTAAAATAAGTCATACTCTCTGCTACTTATAAAATTATGTATAGTACGTATTCATATTCCAAAAAAAGATTATACTAGCCTTATAAAGAGGTCCCATCTCATGTATAACTTTTTCATTCTTTTAAGGCAAGGATACTTTAACTAATGGATTTGAACAATTTTAATACATGCAAATAGATAATAGTAATATTTTATACCCTTATTTTCATCACTATTATAGTAATATTTCAACAAAGGAGTTCCGTTGCATCCCTGCCCCTGACCTCAGAAATAAGGTGTCTTCAAATGAGAATAGGAAAGATTCTTTACCGTGAATTATGTTGATAACATTAAATTGTAGCCAACTAAACTTAGTACTGTTTGGGATCTGTCGTCATTTTCTTATAAATGAGGTTTTAATTTCTTGACCATATTGTTCATTATTAGATACATGTGCTCATCTCAACTGTATGTGATAAAGGAGCTAGACACACTCTTCTGCGGGGACCCCTTATATTTTTTTAGTCCTAGTAATTTCTGCTACTACTTCAGATTTCTGGACTGACACTCTGATAAAAATTTTAACCATAGGTGAATTCAAGATGTACATGTGACGTCTTTAAACTTTAAAGTTTTCAATATTTAATTCATTCTACATTTGAAATTCTTCTAATGTAGCTAACCAACTGAGTTACTAAAAAATCATTACTTTAGAGCACCAAAAGCTTGGAATGACGAGAAACTTGAACTCATAAGTTTTAAATTTTAGTTCCGTCTCTGCTTTGTAATAAGCATGATCTACTGAAAAAACTGGATGATATAAATTGTTATAGATAATATTGTGCGGATTGTGTAAAAAACTGAGTAATTTATATTGGGAAAAACAGGTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTGGTACGAACATATTGTTGACTTTGATTAAGCCCTCTCTTTTATCTTGTTGCTAATTAAATTATTTTTTTTCTTAGCTTAGAAATGTCTCAAATCTGAAGACTGATTGACCATGGATTTGTAGTCATATTTGGGGTGCTTATTCTAACTCCTAATGTAGTAAACATGAAAGTGATGGATGCATACCTGCCCCTGAGTAAACGTGACAAATGAACAAGGTTTTTGGATTTAAATGGGTTAATTAATATATCATAACGCAATTCGCTCAATGTGTGACCCGACCTTCTCTCTTTTTCCCTGTTTGGATGGACTTATTTTAAGTGATTTTATGTTTAAATAGCGTTTAACCATTTTTTGTACAGTTTGTGAAAATTCAGGAAAGTATTCTTAAGCTGAATAATTACAAGTTAGTATTTTTAACTTATGACTTATATGCAATAGCCGTTTTTTGCTTATAAGTCATAAGCTATAAGTCTATCCAACCAGTTACATTAATCAAGTCAACGATTACGACTGGATCATAATGCAATCCATTTAAACTTGAACGGATGGAACATGTTAGTAAAACAAATTAATCATATTTGCTTGCTTATTCTCTAATAACTACTAATCTAGTATAAAACTGAAGTGATGGTGGCATGCTTGCTCATGACTTTTCCTCTGTGTAATCAATTGTGTCAAAAGTGCCCATTTTAGGAGCACATGAGAAAGTGCATTTTAGCACTCAATTGCAATGTGGCCTACTTTATGATTTTTGGAGTCAATGCTGCAAGTGTTAGCTACCTTACATGTTGCTATCTGGAGTCAATTTTACTATCACCACTATAGTACTATTCAATCAATCAAACAGCTAAATATTCGCCACTGAAACGAAAATCTTCTCCAAGTAATTGATTTGACTTAATCGTTGAAATATATTATGCGACTTGAGTGCTTGATCATATTAGTACTCTGTTCTGTCTTGTCCTATCGATTTGGAAAAACCTTATCCGCACCTGTTTTTTGCACTAACTTTGTTAATTTATTGTAGTTAAGTGATTAATTCATATGGGTATATACATGATTAATTTGAATGAGATGCTGACTCTTTTGTGTATTTTTATCAGCTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGTTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCCTCAGCTAGCC</genome_strand>
        <mrna_strand>TAACACTCCCGCCCTTGATGACCTATATCATCACCTCATTGCTATTCACACACAAATAGCAAATTTCTTTATTTCTTTCAGTTTCTCAACAACAATAATATGGCCAAACGAAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGTTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCCTCAGCTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344789" ref_strand="+" ref_description="SGN-E344789 [cTOF-21-H6]">
      <seq>aagattagctttgcttttgattttagcaacaattgtatgtgtgagtgctgcaaagttaaacaaatatcaggatgaagaagacgctgatagaataatatcgctgcctggacaacccaaagtttcgttccatcagtactcagggtatgtcactgtcaatcagtttgctggaagagctctattttactggcttactgaagctattgatgaaccacttactaagcctttggttatttggcttaatgggaggtccaggatgctcttcagtggcctatggtgcatctgaagaaatagggccattcaggataaacaagacggcttcgggactgtatttgaataagttttcatggaacaaattggcaaatttactattccttgaaactccagcaggggttggattttcctacagcaataggtcctctgatctccttgacaccggggatattcgcactgctaaggactcacttcagttccttatccactggatgaatcggntcccacgctacagaaatcgtgaagtctacatcacaggggagagctatgctggtcattatgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0060F16-YRsJr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0060F16.1" temp_strand="-" temp_description="C02SLe0060F16.1  AC226518.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0060F16 sequenced_by:kribb upload_account_name:korea">
        <position start="19385" stop="15101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19085" g_stop="18841" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18840" i_stop="16814" i_length="2027">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16610" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="450" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16609" i_stop="15507" i_length="1103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15506" g_stop="15401" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="556" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0060F16.1" gen_strand="-" ref_id="SGN-E344789" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0060F16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19085" e_stop="18841"/>
          <exon e_start="16813" e_stop="16610"/>
          <exon e_start="15506" e_stop="15401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAAT-GGAGGTCAGATCTCTCTTAAATTTCTACGTGAAAAGTTCCTTTCTATTTTTTTCTATGTTTGATTTTACTTGTTATATTTCATTTTTAGTGTATGATCGATCGTTAATTTTGATGAAAAAGTAAAAATGGAGGAGATAATAACTATTTTTGGCGCATACGCCCCGTATCCTCAAGGTCTAATGTCTGACACATACATAACTTCTTCGGGAAATGGAACACTAATTATGATTACGTGAACTTCTGGTTACTGTTCTATTCATCCTTCCTTTTCTTCTTTTTCCTGTGACTAAAAAGGACTTAAAAGAAAAGGTTTCTATTTCTTTTAACTATATGTTTCTGTTTAAAACAGCGATTATTCAATTTAGTTGGATTTTAATATGAAACTGAGATCGAGAGAAAAGTCTCACTCGTTATTGATTATGTGTTTTGACTCATACATACATTATGTGTTGTGCATTTAAAAGTCATTTTGTCGGTTAATTATTGAGGGTTTTTAGCTTAGGTATTTGATAGTTGAGTACTGGGAAAGGGGGGGCCGTTTAGTTTAGTCATGACTAAACTGTCGACTGATATGGTTCATTATCCATGAACAGATAAGACATTATCTTTGCCAGTTGCTATTTCTCTCTCTCTCTCTCTTCACATTAATATTTGCACGCAGTGAAAATCAATGCTGTTACAACCAACTCCTCATTTAATTTTTCAACTTCATTTCGTGCCCAGACTGGTCTAACATAGATGCCCACACCAATTACGCTTCCGCAACCACCTTCCCCATGTCAGCTACCTAACAGCCTCCTTAAAAACATATTCGAATTTTAAATTTCATAAGTTCAATCATTACCTCTCAAAACTATTGAATTCAGTTGAACTGTGTGATGCATTGGTTATGGGCATGATGCTCTTCGCACAGGACATAGGTTGGATCTTAATGACGAAGCCAATGATTTAAATAAGGGGATTGGATTCACAGAGTAATATAATTTTTATCTTTTTAAGTGTAAAATTATAGGTATTGAGCCTCACGCCCCCGAAATTTAGCCTGAAGGGAGAAGGATTACCAAGTTTTAAATGAGGTCATCCATGTGAGCCTTTTTAATTCGTTAACATATATTTCACGCCTAATGCTGGGCATCTGGTACAAAATTCGAGGCCCAACATCGAGTAAAATAAGTCATACTCTCTGCTACTTATAAAATTATGTATAGTACGTATTCATATTCCAAAAAAAGATTATACTAGCCTTATAAAGAGGTCCCATCTCATGTATAACTTTTTCATTCTTTTAAGGCAAGGATACTTTAACTAATGGATTTGAACAATTTTAATACATGCAAATAGATAATAGTAATATTTTATACCCTTATTTTCATCACTATTATAGTAATATTTCAACAAAGGAGTTCCGTTGCATCCCTGCCCCTGACCTCAGAAATAAGGTGTCTTCAAATGAGAATAGGAAAGATTCTTTACCGTGAATTATGTTGATAACATTAAATTGTAGCCAACTAAACTTAGTACTGTTTGGGATCTGTCGTCATTTTCTTATAAATGAGGTTTTAATTTCTTGACCATATTGTTCATTATTAGATACATGTGCTCATCTCAACTGTATGTGATAAAGGAGCTAGACACACTCTTCTGCGGGGACCCCTTATATTTTTTTAGTCCTAGTAATTTCTGCTACTACTTCAGATTTCTGGACTGACACTCTGATAAAAATTTTAACCATAGGTGAATTCAAGATGTACATGTGACGTCTTTAAACTTTAAAGTTTTCAATATTTAATTCATTCTACATTTGAAATTCTTCTAATGTAGCTAACCAACTGAGTTACTAAAAAATCATTACTTTAGAGCACCAAAAGCTTGGAATGACGAGAAACTTGAACTCATAAGTTTTAAATTTTAGTTCCGTCTCTGCTTTGTAATAAGCATGATCTACTGAAAAAACTGGATGATATAAATTGTTATAGATAATATTGTGCGGATTGTGTAAAAAACTGAGTAATTTATATTGGGAAAAACAGGTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTGGTACGAACATATTGTTGACTTTGATTAAGCCCTCTCTTTTATCTTGTTGCTAATTAAATTATTTTTTTTCTTAGCTTAGAAATGTCTCAAATCTGAAGACTGATTGACCATGGATTTGTAGTCATATTTGGGGTGCTTATTCTAACTCCTAATGTAGTAAACATGAAAGTGATGGATGCATACCTGCCCCTGAGTAAACGTGACAAATGAACAAGGTTTTTGGATTTAAATGGGTTAATTAATATATCATAACGCAATTCGCTCAATGTGTGACCCGACCTTCTCTCTTTTTCCCTGTTTGGATGGACTTATTTTAAGTGATTTTATGTTTAAATAGCGTTTAACCATTTTTTGTACAGTTTGTGAAAATTCAGGAAAGTATTCTTAAGCTGAATAATTACAAGTTAGTATTTTTAACTTATGACTTATATGCAATAGCCGTTTTTTGCTTATAAGTCATAAGCTATAAGTCTATCCAACCAGTTACATTAATCAAGTCAACGATTACGACTGGATCATAATGCAATCCATTTAAACTTGAACGGATGGAACATGTTAGTAAAACAAATTAATCATATTTGCTTGCTTATTCTCTAATAACTACTAATCTAGTATAAAACTGAAGTGATGGTGGCATGCTTGCTCATGACTTTTCCTCTGTGTAATCAATTGTGTCAAAAGTGCCCATTTTAGGAGCACATGAGAAAGTGCATTTTAGCACTCAATTGCAATGTGGCCTACTTTATGATTTTTGGAGTCAATGCTGCAAGTGTTAGCTACCTTACATGTTGCTATCTGGAGTCAATTTTACTATCACCACTATAGTACTATTCAATCAATCAAACAGCTAAATATTCGCCACTGAAACGAAAATCTTCTCCAAGTAATTGATTTGACTTAATCGTTGAAATATATTATGCGACTTGAGTGCTTGATCATATTAGTACTCTGTTCTGTCTTGTCCTATCGATTTGGAAAAACCTTATCCGCACCTGTTTTTTGCACTAACTTTGTTAATTTATTGTAGTTAAGTGATTAATTCATATGGGTATATACATGATTAATTTGAATGAGATGCTGACTCTTTTGTGTATTTTTATCAGCTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGTTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCC</genome_strand>
        <mrna_strand>AAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAATGGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGNTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3883" PGL_stop="4580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3883" e_stop="4580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3883" e_stop="4580" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3883" stop="4580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3884" stop="4439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAATCCACCACCGTAATTGTTGGTTTGGTAACCTCCAGAACCTGCAAAATTTCTGCCTTCCCCCCCGCCATAGTTATAGCCACTACTGCTACCGTAGCCACCTCCTCCAGCAGAATTGTAGCCACCTCCTCCAGGAGAATTGTA</gDNA_template>
            <first_frame> Q  M  H  V  A  N  I  A  S  T  N  *  P  I  Q  I  K  *  A  E  Y  Y  *  Y  L  K  R  K  H  Q  *  S  E  L  F  I  L  F  T  H  D  S  N  M  S  *  T  F  S  *  Y  Q  K  S  L  Q  L  L  V  L  A  *  S  F  G  S  S  S  S  S  L  *  F  P  S  D  V  S  S  P  R  C  S  F  T  D  *  I  P  *  S  A  L  T  C  S  W  L  P  L  Y  D  A  S  D  L  P  P  N  P  V  L  A  K  L  L  L  L  L  L  G  A  P  P  K  S  F  P  L  L  P  P  P  *  P  P  E  K  L  L  P  *  P  E  *  L  M  F  G  V  L  L  P  *  L  P  P  S  T  G  E  L  L  F  P  *  L  L  L  P  P  P  *  L  P  *  P  P  A  E  L  *  P  L  E  N  P  P  P  *  L  L  V  W  *  P  P  E  P  A  K  F  L  P  S  P  P  P  *  L  *  P  L  L  L  P  *  P  P  P  P  A  E  L  *  P  P  P  P  G  E  L   </first_frame>
            <second_frame>  K  C  T  L  Q  I  L  P  V  R  I  D  Q  F  K  L  N  K  L  S  T  I  D  T  *  K  G  N  I  N  S  Q  N  Y  L  S  Y  S  R  M  T  Q  T  C  P  R  H  F  L  D  T  K  N  H  F  S  S  W  C  W  R  N  P  L  V  R  H  R  H  P  C  S  S  L  L  M  F  P  L  R  D  V  H  L  Q  I  E  F  P  D  L  H  *  P  V  L  G  F  H  Y  M  M  L  Q  I  S  H  Q  I  P  C  *  R  S  Y  Y  Y  C  Y  *  E  L  H  Q  S  H  S  H  C  C  H  H  H  N  H  L  R  N  Y  C  L  D  Q  N  N  *  C  L  E  C  C  F  R  S  C  H  P  Q  Q  G  N  C  C  S  H  S  C  Y  Y  H  L  H  S  Y  R  S  L  Q  Q  N  C  D  H  *  K  I  H  H  R  N  C  W  F  G  N  L  Q  N  L  Q  N  F  C  L  P  P  R  H  S  Y  S  H  Y  C  Y  R  S  H  L  L  Q  Q  N  C  S  H  L  L  Q  E  N  C  </second_frame>
            <third_frame>   N  A  R  C  K  Y  C  Q  Y  E  L  T  N  S  N  *  I  S  *  V  L  L  I  L  E  K  E  T  S  I  V  R  I  I  Y  L  I  H  A  *  L  K  H  V  L  D  I  F  L  I  P  K  I  T  S  A  P  G  V  G  V  I  L  W  F  V  I  V  I  P  V  V  P  F  *  C  F  L  S  E  M  F  I  Y  R  L  N  S  L  I  C  T  N  L  F  L  A  S  I  I  *  C  F  R  S  P  T  K  S  R  V  S  E  A  I  I  I  V  T  R  S  S  T  K  V  I  P  T  V  A  T  T  I  T  T  *  E  T  T  A  L  T  R  I  I  D  V  W  S  A  A  S  V  V  A  T  L  N  R  G  T  V  V  P  I  A  A  T  T  T  S  I  A  T  V  A  S  S  R  T  V  T  T  R  K  S  T  T  V  I  V  G  L  V  T  S  R  T  C  K  I  S  A  F  P  P  A  I  V  I  A  T  T  A  T  V  A  T  S  S  S  R  I  V  A  T  S  S  R  R  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4293" stop="4580"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETTALTRIIDVWSAASVVATLNRGTVVPIAATTTSIATVASSRTVTTRKSTTVIVGLVTSRTCKISAFPPAIVIATTATVATSSSRIVATSSRRIV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3959" stop="4162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNINSQNYLSYSRMTQTCPRHFLDTKNHFSSWCWRNPLVRHRHPCSSLLMFPLRDVHLQIEFPDLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6037" PGL_stop="3935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6037" e_stop="5890"/>
            <exon e_start="5806" e_stop="5738"/>
            <exon e_start="5333" e_stop="5227"/>
            <exon e_start="4736" e_stop="4585"/>
            <exon e_start="4431" e_stop="3935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.049" e_score="1.000"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6037" e_stop="5890" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5889" i_stop="5807" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5806" e_stop="5738" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.879" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5737" i_stop="5334" i_length="404"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5333" e_stop="5227" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5226" i_stop="4737" i_length="490"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4736" e_stop="4585" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.049">
            <gDNA_intron_boundary i_start="4584" i_stop="4432" i_length="153"/>
          </intron>
          <exon e_serial="5" e_score="0.924">
            <gDNA_exon_boundary e_start="4431" e_stop="3935" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6037" stop="5890"/>
              <exon start="5806" stop="5738"/>
              <exon start="5333" stop="5227"/>
              <exon start="4736" stop="4593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6037" stop="5890"/>
              <exon start="5806" stop="5738"/>
              <exon start="5333" stop="5227"/>
              <exon start="4736" stop="4674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6013" stop="5890"/>
              <exon start="5806" stop="5738"/>
              <exon start="5333" stop="5227"/>
              <exon start="4736" stop="4641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4666" stop="4585"/>
              <exon start="4431" stop="3935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGATTAAAGATGGCTTTTGTCAATAAAATTGGGAATATTCTTAGACATGGTGTAGGCAAAAACGCAAACTTGGAACTCTCTGCCTCAAATGGTTCACTTTTCCAGACTATAAGAAGCATGTCTTCGTCTAAGCTTTTCGTTGGGG : GTCTCTCGTATGGCACTGATGAAAGTTCTCTGAAAGAGACATTCTCTCAATATGGTGAAGTAATCGAAG : CTAGAGTTATTCTGGATCGTGAAACTGGGAGGTCCAGAGGATTTGGTTTTATTAGTTTTCCATCAAGTGAAGAAGCAACAAGTGCCATGCAGGCCATGGATGGCCAG : GATCTTCATGGAAGACGGATAAAGGTGAATTATGCCACAGAAAAACGTCGTGATGGTTTTGGAGGTGGCTATGGTGGAGAAGGTGGAAACTTTGCAGGTGGTGGAGGTTATGCAGCCAGTAATTATGGAGGTGGAGGTGGTGGATTTTCTGG : TGGTCACAGTTCTGCTGGAGGCTACGGTAGCTATGGAGGTGGTAGTAGCAGCTATGGGAACAACAGTTCCCCTGTTGAGGGTGGCAACTACGGAAGCAGCACTCCAAACATCAATTATTCTGGTCAAGGCAGTAGTTTCTCAGGTGGTTATGGTGGTGGCAACAGTGGGAATGACTTTGGTGGAGCTCCTAGTAACAATAATAATAGCTTCGCTAACACGGGATTTGGTGGGAGATCTGAAGCATCATATAATGGAAGCCAAGAACAGGTTAGTGCAGATCAGGGAATTCAATCTGTAAATGAACATCTCGGAGAGGAAACATCAGAAGGGAACTACAGGGATGACGATGACGAACCAAAGGATTACGCCAACACCAGGAGCTGAAGTGATTTTTGGTATCAAGAAAATGTCTAGGACATGTTTGAGTCATGCGTGAATAAGATAAATAATTCTGACTATTGATGTTTCCTTTTCAAGTATCAATAGTACTCAGCTT</gDNA_template>
            <first_frame> V  G  L  K  M  A  F  V  N  K  I  G  N  I  L  R  H  G  V  G  K  N  A  N  L  E  L  S  A  S  N  G  S  L  F  Q  T  I  R  S  M  S  S  S  K  L  F  V  G   : G  L  S  Y  G  T  D  E  S  S  L  K  E  T  F  S  Q  Y  G  E  V  I  E   : A  R  V  I  L  D  R  E  T  G  R  S  R  G  F  G  F  I  S  F  P  S  S  E  E  A  T  S  A  M  Q  A  M  D  G  Q  :  D  L  H  G  R  R  I  K  V  N  Y  A  T  E  K  R  R  D  G  F  G  G  G  Y  G  G  E  G  G  N  F  A  G  G  G  G  Y  A  A  S  N  Y  G  G  G  G  G  G  F  S  G :   G  H  S  S  A  G  G  Y  G  S  Y  G  G  G  S  S  S  Y  G  N  N  S  S  P  V  E  G  G  N  Y  G  S  S  T  P  N  I  N  Y  S  G  Q  G  S  S  F  S  G  G  Y  G  G  G  N  S  G  N  D  F  G  G  A  P  S  N  N  N  N  S  F  A  N  T  G  F  G  G  R  S  E  A  S  Y  N  G  S  Q  E  Q  V  S  A  D  Q  G  I  Q  S  V  N  E  H  L  G  E  E  T  S  E  G  N  Y  R  D  D  D  D  E  P  K  D  Y  A  N  T  R  S  *  S  D  F  W  Y  Q  E  N  V  *  D  M  F  E  S  C  V  N  K  I  N  N  S  D  Y  *  C  F  L  F  K  Y  Q  *  Y  S  A  </first_frame>
            <second_frame>  L  D  *  R  W  L  L  S  I  K  L  G  I  F  L  D  M  V  *  A  K  T  Q  T  W  N  S  L  P  Q  M  V  H  F  S  R  L  *  E  A  C  L  R  L  S  F  S  L  G  :  V  S  R  M  A  L  M  K  V  L  *  K  R  H  S  L  N  M  V  K  *  S  K  :  L  E  L  F  W  I  V  K  L  G  G  P  E  D  L  V  L  L  V  F  H  Q  V  K  K  Q  Q  V  P  C  R  P  W  M  A  R :   I  F  M  E  D  G  *  R  *  I  M  P  Q  K  N  V  V  M  V  L  E  V  A  M  V  E  K  V  E  T  L  Q  V  V  E  V  M  Q  P  V  I  M  E  V  E  V  V  D  F  L   : V  V  T  V  L  L  E  A  T  V  A  M  E  V  V  V  A  A  M  G  T  T  V  P  L  L  R  V  A  T  T  E  A  A  L  Q  T  S  I  I  L  V  K  A  V  V  S  Q  V  V  M  V  V  A  T  V  G  M  T  L  V  E  L  L  V  T  I  I  I  A  S  L  T  R  D  L  V  G  D  L  K  H  H  I  M  E  A  K  N  R  L  V  Q  I  R  E  F  N  L  *  M  N  I  S  E  R  K  H  Q  K  G  T  T  G  M  T  M  T  N  Q  R  I  T  P  T  P  G  A  E  V  I  F  G  I  K  K  M  S  R  T  C  L  S  H  A  *  I  R  *  I  I  L  T  I  D  V  S  F  S  S  I  N  S  T  Q  L </second_frame>
            <third_frame>   W  I  K  D  G  F  C  Q  *  N  W  E  Y  S  *  T  W  C  R  Q  K  R  K  L  G  T  L  C  L  K  W  F  T  F  P  D  Y  K  K  H  V  F  V  *  A  F  R  W  G :   S  L  V  W  H  *  *  K  F  S  E  R  D  I  L  S  I  W  *  S  N  R  S :   *  S  Y  S  G  S  *  N  W  E  V  Q  R  I  W  F  Y  *  F  S  I  K  *  R  S  N  K  C  H  A  G  H  G  W  P   : G  S  S  W  K  T  D  K  G  E  L  C  H  R  K  T  S  *  W  F  W  R  W  L  W  W  R  R  W  K  L  C  R  W  W  R  L  C  S  Q  *  L  W  R  W  R  W  W  I  F  W  :  W  S  Q  F  C  W  R  L  R  *  L  W  R  W  *  *  Q  L  W  E  Q  Q  F  P  C  *  G  W  Q  L  R  K  Q  H  S  K  H  Q  L  F  W  S  R  Q  *  F  L  R  W  L  W  W  W  Q  Q  W  E  *  L  W  W  S  S  *  *  Q  *  *  *  L  R  *  H  G  I  W  W  E  I  *  S  I  I  *  W  K  P  R  T  G  *  C  R  S  G  N  S  I  C  K  *  T  S  R  R  G  N  I  R  R  E  L  Q  G  *  R  *  R  T  K  G  L  R  Q  H  Q  E  L  K  *  F  L  V  S  R  K  C  L  G  H  V  *  V  M  R  E  *  D  K  *  F  *  L  L  M  F  P  F  Q  V  S  I  V  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6037" stop="5890"/>
                    <exon start="5806" stop="5738"/>
                    <exon start="5333" stop="5227"/>
                    <exon start="4736" stop="4585"/>
                    <exon start="4431" stop="4047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLKMAFVNKIGNILRHGVGKNANLELSASNGSLFQTIRSMSSSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQAMDGQDLHGRRIKVNYATEKRRDGFGGGYGGEGGNFAGGGGYAASNYGGGGGGFSGGHSSAGGYGSYGGGSSSYGNNSSPVEGGNYGSSTPNINYSGQGSSFSGGYGGGNSGNDFGGAPSNNNNSFANTGFGGRSEASYNGSQEQVSADQGIQSVNEHLGEETSEGNYRDDDDEPKDYANTRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8899" PGL_stop="7071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8899" e_stop="7071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="8899" e_stop="7071" e_length="1829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8899" stop="8218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8723" stop="8009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8620" stop="8028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8496" stop="7913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8216" stop="7803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8093" stop="7507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7664" stop="7071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7663" stop="7131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTATGAGTATTTGAGGTATGTGGATCAAGGTCGAAAATTGATTGAGAGATTGGAGAGTTTGAACTTGGTTAAAGGTAGTAAAGAAGATGAGCTTCTGCGTAGGGCTACTGATCTTCTGCAAACAGCAATGAATCGTCTTGAGGAGGAGTTTACGCATTTGCTTGTTCACAACAGGCAGCCTTTTGAGCCGGAGCATATGTCTTTTCGCTCCAGTGAAGATGATACGTTGGATGATGGCTCGATTGTGTCGTTTGGGGATGACTCGATTGAGGATGTGGTTCAAAGAGATAGCATGAGTAGGAGTTCAGGGGAGTACATCATTGAACTGGTGCATCCAGATGTTATTCCTGACCTAAGATGCATTGCCAATTTGATGTTTGATTCAAATTATGGCCGGGAATGTTCTCAAGCATTTATCAATGTCAGAAAAGATGGCTTGGATGATTGCCTCTTCATTCTTGAAGTAGAGAAGTTGAGCATCGAGGATGTATTGAAGATGGAATGGAACTCGTTGAACTCCAAAATCAGGAGGTGGATACGGGCTATGAAGATCTTTGTGCGCATTTATCTTGCCAGTGAAAAATGGCTAAGTGATCAGATTTTTAGTGAGCTGGAAGCAGTTGGTTCAGTTTGCTTTGCTGAGGCCTCGAAAGCTTCAATCTTGCAGCTTCTGAACTTTGGTGAAGCCATAGCTATTGGCCCTCATCAACCGGAGAAATTGATTCGGATTCTTGACATGTATGAGGTGCTTGCGGATCTTATCCCAGATATTGATGCTATGTACTCTGATGAGGCGGGGTTATGCGTTAGAAGAGAGTGCCAAGACATTCTTAGAAGCTTGGGTGATTGTGCAAAGGCAACCTTTCTGGAATTTGAAAATGCTGTTGCTTCCAGCATATCAGCCAACCCTTTTCCTGGTGGCGGAATACACCATCTCACGAGGTATGTCATGAACTACATGAAAACTCTTATTGATTATAGCAAGACACTTGATGAGCTTCTGAAGGGCCATGAGAAGGAAGAATCAGTGCCCATTTTACCAGACATGACACCTGATAGAGAAGAAGAAAACACAGACAGACGCAGTCACATTTCTCCGCTGGCTCAACATTTTCGATCCTTCACTTCAATCTTGGAGTGCAACCTTGAGGATAAGGCCAGGTTATACAAGGATGAGTCACTAGGTCACCTTTTCTTAATGAATAATATTCATTACATGGCTGAGAAGGTGAAGAATTCCAATCTAAGAACACTACTAGGTGATGGTTGGATCCGAAAACATAATTGGAAATTCCAACATCATGCAATGAGCTATGAGAGAGCTACTTGGAGCTCTATCCTCTCTTTCCTCAGAGATGAAGGGCTATATAATCCAGGCTCGAATTCTATCTCGAGAACTCTTCTCAAGGATAGACTAAACAACTTTTATCTCTCATTTGAGGATGTCTACAAGAGCCAGACAGGATGGTCTATCCCAGATAGTCAACTTCGTGAAGATCTTCGAATCTCAACATCACTCAAGGTTATCCAGGGATACAGGACATTTGTTGGAAGACACACCAACCATATAAGCGACAAGCACATAAAGTATACTGCGGACGATTTGGAGAACTTCCTTTTGGATCTGTTTGAGGGATCTCCAAGATCTTTACATGGTTCCCACAGGAAGTGAGCTAATCAGGGATTTCTTCCACACAGGCTTAATCCTCAATCATCATACTAGTTTACATTTAGATATATCTATTTTTGTAATCTAAATGAATTCATAACTTGTTGAATGTAGAAATTTGGTGTTATGTGCAAAAAGGTCAAATGCCATGTACTTAT</gDNA_template>
            <first_frame> A  Y  E  Y  L  R  Y  V  D  Q  G  R  K  L  I  E  R  L  E  S  L  N  L  V  K  G  S  K  E  D  E  L  L  R  R  A  T  D  L  L  Q  T  A  M  N  R  L  E  E  E  F  T  H  L  L  V  H  N  R  Q  P  F  E  P  E  H  M  S  F  R  S  S  E  D  D  T  L  D  D  G  S  I  V  S  F  G  D  D  S  I  E  D  V  V  Q  R  D  S  M  S  R  S  S  G  E  Y  I  I  E  L  V  H  P  D  V  I  P  D  L  R  C  I  A  N  L  M  F  D  S  N  Y  G  R  E  C  S  Q  A  F  I  N  V  R  K  D  G  L  D  D  C  L  F  I  L  E  V  E  K  L  S  I  E  D  V  L  K  M  E  W  N  S  L  N  S  K  I  R  R  W  I  R  A  M  K  I  F  V  R  I  Y  L  A  S  E  K  W  L  S  D  Q  I  F  S  E  L  E  A  V  G  S  V  C  F  A  E  A  S  K  A  S  I  L  Q  L  L  N  F  G  E  A  I  A  I  G  P  H  Q  P  E  K  L  I  R  I  L  D  M  Y  E  V  L  A  D  L  I  P  D  I  D  A  M  Y  S  D  E  A  G  L  C  V  R  R  E  C  Q  D  I  L  R  S  L  G  D  C  A  K  A  T  F  L  E  F  E  N  A  V  A  S  S  I  S  A  N  P  F  P  G  G  G  I  H  H  L  T  R  Y  V  M  N  Y  M  K  T  L  I  D  Y  S  K  T  L  D  E  L  L  K  G  H  E  K  E  E  S  V  P  I  L  P  D  M  T  P  D  R  E  E  E  N  T  D  R  R  S  H  I  S  P  L  A  Q  H  F  R  S  F  T  S  I  L  E  C  N  L  E  D  K  A  R  L  Y  K  D  E  S  L  G  H  L  F  L  M  N  N  I  H  Y  M  A  E  K  V  K  N  S  N  L  R  T  L  L  G  D  G  W  I  R  K  H  N  W  K  F  Q  H  H  A  M  S  Y  E  R  A  T  W  S  S  I  L  S  F  L  R  D  E  G  L  Y  N  P  G  S  N  S  I  S  R  T  L  L  K  D  R  L  N  N  F  Y  L  S  F  E  D  V  Y  K  S  Q  T  G  W  S  I  P  D  S  Q  L  R  E  D  L  R  I  S  T  S  L  K  V  I  Q  G  Y  R  T  F  V  G  R  H  T  N  H  I  S  D  K  H  I  K  Y  T  A  D  D  L  E  N  F  L  L  D  L  F  E  G  S  P  R  S  L  H  G  S  H  R  K  *  A  N  Q  G  F  L  P  H  R  L  N  P  Q  S  S  Y  *  F  T  F  R  Y  I  Y  F  C  N  L  N  E  F  I  T  C  *  M  *  K  F  G  V  M  C  K  K  V  K  C  H  V  L   </first_frame>
            <second_frame>  L  M  S  I  *  G  M  W  I  K  V  E  N  *  L  R  D  W  R  V  *  T  W  L  K  V  V  K  K  M  S  F  C  V  G  L  L  I  F  C  K  Q  Q  *  I  V  L  R  R  S  L  R  I  C  L  F  T  T  G  S  L  L  S  R  S  I  C  L  F  A  P  V  K  M  I  R  W  M  M  A  R  L  C  R  L  G  M  T  R  L  R  M  W  F  K  E  I  A  *  V  G  V  Q  G  S  T  S  L  N  W  C  I  Q  M  L  F  L  T  *  D  A  L  P  I  *  C  L  I  Q  I  M  A  G  N  V  L  K  H  L  S  M  S  E  K  M  A  W  M  I  A  S  S  F  L  K  *  R  S  *  A  S  R  M  Y  *  R  W  N  G  T  R  *  T  P  K  S  G  G  G  Y  G  L  *  R  S  L  C  A  F  I  L  P  V  K  N  G  *  V  I  R  F  L  V  S  W  K  Q  L  V  Q  F  A  L  L  R  P  R  K  L  Q  S  C  S  F  *  T  L  V  K  P  *  L  L  A  L  I  N  R  R  N  *  F  G  F  L  T  C  M  R  C  L  R  I  L  S  Q  I  L  M  L  C  T  L  M  R  R  G  Y  A  L  E  E  S  A  K  T  F  L  E  A  W  V  I  V  Q  R  Q  P  F  W  N  L  K  M  L  L  L  P  A  Y  Q  P  T  L  F  L  V  A  E  Y  T  I  S  R  G  M  S  *  T  T  *  K  L  L  L  I  I  A  R  H  L  M  S  F  *  R  A  M  R  R  K  N  Q  C  P  F  Y  Q  T  *  H  L  I  E  K  K  K  T  Q  T  D  A  V  T  F  L  R  W  L  N  I  F  D  P  S  L  Q  S  W  S  A  T  L  R  I  R  P  G  Y  T  R  M  S  H  *  V  T  F  S  *  *  I  I  F  I  T  W  L  R  R  *  R  I  P  I  *  E  H  Y  *  V  M  V  G  S  E  N  I  I  G  N  S  N  I  M  Q  *  A  M  R  E  L  L  G  A  L  S  S  L  S  S  E  M  K  G  Y  I  I  Q  A  R  I  L  S  R  E  L  F  S  R  I  D  *  T  T  F  I  S  H  L  R  M  S  T  R  A  R  Q  D  G  L  S  Q  I  V  N  F  V  K  I  F  E  S  Q  H  H  S  R  L  S  R  D  T  G  H  L  L  E  D  T  P  T  I  *  A  T  S  T  *  S  I  L  R  T  I  W  R  T  S  F  W  I  C  L  R  D  L  Q  D  L  Y  M  V  P  T  G  S  E  L  I  R  D  F  F  H  T  G  L  I  L  N  H  H  T  S  L  H  L  D  I  S  I  F  V  I  *  M  N  S  *  L  V  E  C  R  N  L  V  L  C  A  K  R  S  N  A  M  Y  L  </second_frame>
            <third_frame>   L  *  V  F  E  V  C  G  S  R  S  K  I  D  *  E  I  G  E  F  E  L  G  *  R  *  *  R  R  *  A  S  A  *  G  Y  *  S  S  A  N  S  N  E  S  S  *  G  G  V  Y  A  F  A  C  S  Q  Q  A  A  F  *  A  G  A  Y  V  F  S  L  Q  *  R  *  Y  V  G  *  W  L  D  C  V  V  W  G  *  L  D  *  G  C  G  S  K  R  *  H  E  *  E  F  R  G  V  H  H  *  T  G  A  S  R  C  Y  S  *  P  K  M  H  C  Q  F  D  V  *  F  K  L  W  P  G  M  F  S  S  I  Y  Q  C  Q  K  R  W  L  G  *  L  P  L  H  S  *  S  R  E  V  E  H  R  G  C  I  E  D  G  M  E  L  V  E  L  Q  N  Q  E  V  D  T  G  Y  E  D  L  C  A  H  L  S  C  Q  *  K  M  A  K  *  S  D  F  *  *  A  G  S  S  W  F  S  L  L  C  *  G  L  E  S  F  N  L  A  A  S  E  L  W  *  S  H  S  Y  W  P  S  S  T  G  E  I  D  S  D  S  *  H  V  *  G  A  C  G  S  Y  P  R  Y  *  C  Y  V  L  *  *  G  G  V  M  R  *  K  R  V  P  R  H  S  *  K  L  G  *  L  C  K  G  N  L  S  G  I  *  K  C  C  C  F  Q  H  I  S  Q  P  F  S  W  W  R  N  T  P  S  H  E  V  C  H  E  L  H  E  N  S  Y  *  L  *  Q  D  T  *  *  A  S  E  G  P  *  E  G  R  I  S  A  H  F  T  R  H  D  T  *  *  R  R  R  K  H  R  Q  T  Q  S  H  F  S  A  G  S  T  F  S  I  L  H  F  N  L  G  V  Q  P  *  G  *  G  Q  V  I  Q  G  *  V  T  R  S  P  F  L  N  E  *  Y  S  L  H  G  *  E  G  E  E  F  Q  S  K  N  T  T  R  *  W  L  D  P  K  T  *  L  E  I  P  T  S  C  N  E  L  *  E  S  Y  L  E  L  Y  P  L  F  P  Q  R  *  R  A  I  *  S  R  L  E  F  Y  L  E  N  S  S  Q  G  *  T  K  Q  L  L  S  L  I  *  G  C  L  Q  E  P  D  R  M  V  Y  P  R  *  S  T  S  *  R  S  S  N  L  N  I  T  Q  G  Y  P  G  I  Q  D  I  C  W  K  T  H  Q  P  Y  K  R  Q  A  H  K  V  Y  C  G  R  F  G  E  L  P  F  G  S  V  *  G  I  S  K  I  F  T  W  F  P  Q  E  V  S  *  S  G  I  S  S  T  Q  A  *  S  S  I  I  I  L  V  Y  I  *  I  Y  L  F  L  *  S  K  *  I  H  N  L  L  N  V  E  I  W  C  Y  V  Q  K  G  Q  M  P  C  T  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8899" stop="7226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYEYLRYVDQGRKLIERLESLNLVKGSKEDELLRRATDLLQTAMNRLEEEFTHLLVHNRQPFEPEHMSFRSSEDDTLDDGSIVSFGDDSIEDVVQRDSMSRSSGEYIIELVHPDVIPDLRCIANLMFDSNYGRECSQAFINVRKDGLDDCLFILEVEKLSIEDVLKMEWNSLNSKIRRWIRAMKIFVRIYLASEKWLSDQIFSELEAVGSVCFAEASKASILQLLNFGEAIAIGPHQPEKLIRILDMYEVLADLIPDIDAMYSDEAGLCVRRECQDILRSLGDCAKATFLEFENAVASSISANPFPGGGIHHLTRYVMNYMKTLIDYSKTLDELLKGHEKEESVPILPDMTPDREEENTDRRSHISPLAQHFRSFTSILECNLEDKARLYKDESLGHLFLMNNIHYMAEKVKNSNLRTLLGDGWIRKHNWKFQHHAMSYERATWSSILSFLRDEGLYNPGSNSISRTLLKDRLNNFYLSFEDVYKSQTGWSIPDSQLREDLRISTSLKVIQGYRTFVGRHTNHISDKHIKYTADDLENFLLDLFEGSPRSLHGSHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9636" PGL_stop="8955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9636" e_stop="8955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="9636" e_stop="8955" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9636" stop="8955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCCACTGTTAAAAAAAGAGTCAGTTCCTCTCTGCTTCATATATGGATCTTGTTTGCTGATTTGTTCTCTTTCTGCATATTCAAGATTTGAGCTTTGAGGTTTGTGCATTTTCACTTTCCTCTGTTTCTTGCTTCTACTTCTGACCAGTGTTTTCTTCATCCTCAAATCTCCCACTTTAGTTAACCTAAAGTTTGCTGCTTTTGTCTTCTTATCTTATACCCAGCCGCCTCTTTTTTTTTTTTAGATTGCCCTCGAAAGGGGTTTGGGTTAACTCTTACAGTAGTTGATCTTTGCAGGTGACAGATAATATTTCTTGGTGAAGTTCTTTCTTGATTGTAATTTCTTGGGTATTTCGTAGAAGTTAAAAAGTTGCAGTCTTTACCTGTTTAGGATTAAGCTTGAGCTAGTTTCTTGGTTTTTGAATTTATATGGGAGACTGTGAATCTTCAGTCCCCTTAATGGAAGAAGAAGAAGAAAACCTAATAGCTGCTGCACAGAAAATTGTGAAAGCGTTGGGGTCAAATAGGACTTTAACGGATGATGCTAGGAAAATTTTAGCTGATCTAGGTTCCCAATTGTCTTCTATAACTAGAGTGAGTGAACCCGAAGATGAGGGAGCTGGTGAAACTGAGGAGCAGCTTATTGAGCTGGAGGAGGAGCTGAATTTAGTGCAGAGTAA</gDNA_template>
            <first_frame> I  A  T  V  K  K  R  V  S  S  S  L  L  H  I  W  I  L  F  A  D  L  F  S  F  C  I  F  K  I  *  A  L  R  F  V  H  F  H  F  P  L  F  L  A  S  T  S  D  Q  C  F  L  H  P  Q  I  S  H  F  S  *  P  K  V  C  C  F  C  L  L  I  L  Y  P  A  A  S  F  F  F  L  D  C  P  R  K  G  F  G  L  T  L  T  V  V  D  L  C  R  *  Q  I  I  F  L  G  E  V  L  S  *  L  *  F  L  G  Y  F  V  E  V  K  K  L  Q  S  L  P  V  *  D  *  A  *  A  S  F  L  V  F  E  F  I  W  E  T  V  N  L  Q  S  P  *  W  K  K  K  K  K  T  *  *  L  L  H  R  K  L  *  K  R  W  G  Q  I  G  L  *  R  M  M  L  G  K  F  *  L  I  *  V  P  N  C  L  L  *  L  E  *  V  N  P  K  M  R  E  L  V  K  L  R  S  S  L  L  S  W  R  R  S  *  I  *  C  R  V  </first_frame>
            <second_frame>  L  P  L  L  K  K  E  S  V  P  L  C  F  I  Y  G  S  C  L  L  I  C  S  L  S  A  Y  S  R  F  E  L  *  G  L  C  I  F  T  F  L  C  F  L  L  L  L  L  T  S  V  F  F  I  L  K  S  P  T  L  V  N  L  K  F  A  A  F  V  F  L  S  Y  T  Q  P  P  L  F  F  F  *  I  A  L  E  R  G  L  G  *  L  L  Q  *  L  I  F  A  G  D  R  *  Y  F  L  V  K  F  F  L  D  C  N  F  L  G  I  S  *  K  L  K  S  C  S  L  Y  L  F  R  I  K  L  E  L  V  S  W  F  L  N  L  Y  G  R  L  *  I  F  S  P  L  N  G  R  R  R  R  K  P  N  S  C  C  T  E  N  C  E  S  V  G  V  K  *  D  F  N  G  *  C  *  E  N  F  S  *  S  R  F  P  I  V  F  Y  N  *  S  E  *  T  R  R  *  G  S  W  *  N  *  G  A  A  Y  *  A  G  G  G  A  E  F  S  A  E  * </second_frame>
            <third_frame>   C  H  C  *  K  K  S  Q  F  L  S  A  S  Y  M  D  L  V  C  *  F  V  L  F  L  H  I  Q  D  L  S  F  E  V  C  A  F  S  L  S  S  V  S  C  F  Y  F  *  P  V  F  S  S  S  S  N  L  P  L  *  L  T  *  S  L  L  L  L  S  S  Y  L  I  P  S  R  L  F  F  F  F  R  L  P  S  K  G  V  W  V  N  S  Y  S  S  *  S  L  Q  V  T  D  N  I  S  W  *  S  S  F  L  I  V  I  S  W  V  F  R  R  S  *  K  V  A  V  F  T  C  L  G  L  S  L  S  *  F  L  G  F  *  I  Y  M  G  D  C  E  S  S  V  P  L  M  E  E  E  E  E  N  L  I  A  A  A  Q  K  I  V  K  A  L  G  S  N  R  T  L  T  D  D  A  R  K  I  L  A  D  L  G  S  Q  L  S  S  I  T  R  V  S  E  P  E  D  E  G  A  G  E  T  E  E  Q  L  I  E  L  E  E  E  L  N  L  V  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9211" stop="8957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYMGDCESSVPLMEEEEENLIAAAQKIVKALGSNRTLTDDARKILADLGSQLSSITRVSEPEDEGAGETEEQLIELEEELNLVQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15133" PGL_stop="13626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15133" e_stop="14953"/>
            <exon e_start="14871" e_stop="14741"/>
            <exon e_start="14671" e_stop="14576"/>
            <exon e_start="14500" e_stop="14395"/>
            <exon e_start="14304" e_stop="13850"/>
            <exon e_start="13638" e_stop="13626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="0.967"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.859" e_score="0.993"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="15133" e_stop="14953" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="14952" i_stop="14872" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14871" e_stop="14741" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14740" i_stop="14672" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14671" e_stop="14576" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14575" i_stop="14501" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14500" e_stop="14395" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14394" i_stop="14305" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="14304" e_stop="13850" e_length="455"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.859">
            <gDNA_intron_boundary i_start="13849" i_stop="13639" i_length="211"/>
          </intron>
          <exon e_serial="6" e_score="0.538">
            <gDNA_exon_boundary e_start="13638" e_stop="13626" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15133" stop="14953"/>
              <exon start="14871" stop="14741"/>
              <exon start="14671" stop="14576"/>
              <exon start="14500" stop="14395"/>
              <exon start="14304" stop="14247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15131" stop="14971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14843" stop="14741"/>
              <exon start="14671" stop="14576"/>
              <exon start="14500" stop="14395"/>
              <exon start="14304" stop="13850"/>
              <exon start="13638" stop="13626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14641" stop="14576"/>
              <exon start="14500" stop="14395"/>
              <exon start="14304" stop="13853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411530" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACACTTGTGATTTCAAACGCCATAAAGAATCAAACGAGTGTGAGTCATTGTACTACTATGCGATGGATCAAGAATTTGGGAACATCGATCAGTACAATATTTATGCTCCTCCTTGTAACAATTCTGATGGTAGCACTTCAACTAGACAGACCATGAATTTACCCCACCGACCTTACAAG : ATGTTTAAGCAGCTATCAGGTTATGATCCTTGCACGGAGAAGTATGCAGAAATTTACTACAACAGGCCTGATGTGCAGAAAGCTATGCACGCGAATACAACAAGAATTCCTTATAAATGGACAGCCTGCAG : TGAGACATTGAATCGAAACTGGAATGATACAGATGACTCGATTCTCCCAATCTACCAGGAACTAATTGCTGCTGGATTGAGAATTTGGGTTTTCAG : TGGTGATGTAGACTCAGTTGTACCCGTTACCGCGACAAGGTATTCCCTAGCACAGCTCAAGTTATCTACCACAACTCCATGGTATCCTTGGTATGTCAAAAAACAG : GTTGGGGGCTGGACAGAGGTATACAAAGGTCTAACATTTGCAACAGTGAGAGGGGCAGGTCATGAAGTGCCATTATTCAAGCCAAGGGCAGCTTATCAACTATTTAGATCATTTTTAAAAGGAGAGCCACTTCCAAAGTCATGATTGTTGTGACATTATAAATTATACTATTATTAGTATTATGTATGCTTCAAAAATGTCAATTGTTTCTACTCTTAGGCTAAGAATTAAAGAGTTGCCAAGTTGAAAGAAAAGAATTGTTTCAACTTTTAAAAGAGAATTGATGGAAAAAGGGAGATTACAATAGGACTTTGGGTTGGGGAAAAAAAAAGGTATCAATTTGTTGTAACAATATTAGGTAGGTGTGGTTTGAAGTCTACCTCACGTGTTTTAGGAAAATGAATTTTCTTTATATTTCGTATTTCAATAAAAAGGGATTAGAATTCTTATTAGTA : GCCACTAACATAA</gDNA_template>
            <first_frame> Q  H  L  *  F  Q  T  P  *  R  I  K  R  V  *  V  I  V  L  L  C  D  G  S  R  I  W  E  H  R  S  V  Q  Y  L  C  S  S  L  *  Q  F  *  W  *  H  F  N  *  T  D  H  E  F  T  P  P  T  L  Q   : D  V  *  A  A  I  R  L  *  S  L  H  G  E  V  C  R  N  L  L  Q  Q  A  *  C  A  E  S  Y  A  R  E  Y  N  K  N  S  L  *  M  D  S  L  Q  :  *  D  I  E  S  K  L  E  *  Y  R  *  L  D  S  P  N  L  P  G  T  N  C  C  W  I  E  N  L  G  F  Q  :  W  *  C  R  L  S  C  T  R  Y  R  D  K  V  F  P  S  T  A  Q  V  I  Y  H  N  S  M  V  S  L  V  C  Q  K  T   : G  W  G  L  D  R  G  I  Q  R  S  N  I  C  N  S  E  R  G  R  S  *  S  A  I  I  Q  A  K  G  S  L  S  T  I  *  I  I  F  K  R  R  A  T  S  K  V  M  I  V  V  T  L  *  I  I  L  L  L  V  L  C  M  L  Q  K  C  Q  L  F  L  L  L  G  *  E  L  K  S  C  Q  V  E  R  K  E  L  F  Q  L  L  K  E  N  *  W  K  K  G  D  Y  N  R  T  L  G  W  G  K  K  K  V  S  I  C  C  N  N  I  R  *  V  W  F  E  V  Y  L  T  C  F  R  K  M  N  F  L  Y  I  S  Y  F  N  K  K  G  L  E  F  L  L  V  :  A  T  N  I  </first_frame>
            <second_frame>  N  T  C  D  F  K  R  H  K  E  S  N  E  C  E  S  L  Y  Y  Y  A  M  D  Q  E  F  G  N  I  D  Q  Y  N  I  Y  A  P  P  C  N  N  S  D  G  S  T  S  T  R  Q  T  M  N  L  P  H  R  P  Y  K  :  M  F  K  Q  L  S  G  Y  D  P  C  T  E  K  Y  A  E  I  Y  Y  N  R  P  D  V  Q  K  A  M  H  A  N  T  T  R  I  P  Y  K  W  T  A  C  S :   E  T  L  N  R  N  W  N  D  T  D  D  S  I  L  P  I  Y  Q  E  L  I  A  A  G  L  R  I  W  V  F  S :   G  D  V  D  S  V  V  P  V  T  A  T  R  Y  S  L  A  Q  L  K  L  S  T  T  T  P  W  Y  P  W  Y  V  K  K  Q  :  V  G  G  W  T  E  V  Y  K  G  L  T  F  A  T  V  R  G  A  G  H  E  V  P  L  F  K  P  R  A  A  Y  Q  L  F  R  S  F  L  K  G  E  P  L  P  K  S  *  L  L  *  H  Y  K  L  Y  Y  Y  *  Y  Y  V  C  F  K  N  V  N  C  F  Y  S  *  A  K  N  *  R  V  A  K  L  K  E  K  N  C  F  N  F  *  K  R  I  D  G  K  R  E  I  T  I  G  L  W  V  G  E  K  K  R  Y  Q  F  V  V  T  I  L  G  R  C  G  L  K  S  T  S  R  V  L  G  K  *  I  F  F  I  F  R  I  S  I  K  R  D  *  N  S  Y  *  * :   P  L  T  * </second_frame>
            <third_frame>   T  L  V  I  S  N  A  I  K  N  Q  T  S  V  S  H  C  T  T  M  R  W  I  K  N  L  G  T  S  I  S  T  I  F  M  L  L  L  V  T  I  L  M  V  A  L  Q  L  D  R  P  *  I  Y  P  T  D  L  T  R :   C  L  S  S  Y  Q  V  M  I  L  A  R  R  S  M  Q  K  F  T  T  T  G  L  M  C  R  K  L  C  T  R  I  Q  Q  E  F  L  I  N  G  Q  P  A   : V  R  H  *  I  E  T  G  M  I  Q  M  T  R  F  S  Q  S  T  R  N  *  L  L  L  D  *  E  F  G  F  S   : V  V  M  *  T  Q  L  Y  P  L  P  R  Q  G  I  P  *  H  S  S  S  Y  L  P  Q  L  H  G  I  L  G  M  S  K  N  R :   L  G  A  G  Q  R  Y  T  K  V  *  H  L  Q  Q  *  E  G  Q  V  M  K  C  H  Y  S  S  Q  G  Q  L  I  N  Y  L  D  H  F  *  K  E  S  H  F  Q  S  H  D  C  C  D  I  I  N  Y  T  I  I  S  I  M  Y  A  S  K  M  S  I  V  S  T  L  R  L  R  I  K  E  L  P  S  *  K  K  R  I  V  S  T  F  K  R  E  L  M  E  K  G  R  L  Q  *  D  F  G  L  G  K  K  K  G  I  N  L  L  *  Q  Y  *  V  G  V  V  *  S  L  P  H  V  F  *  E  N  E  F  S  L  Y  F  V  F  Q  *  K  G  I  R  I  L  I  S   : S  H  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15132" stop="14953"/>
                    <exon start="14871" stop="14741"/>
                    <exon start="14671" stop="14576"/>
                    <exon start="14500" stop="14395"/>
                    <exon start="14304" stop="14161"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTCDFKRHKESNECESLYYYAMDQEFGNIDQYNIYAPPCNNSDGSTSTRQTMNLPHRPYKMFKQLSGYDPCTEKYAEIYYNRPDVQKAMHANTTRIPYKWTACSETLNRNWNDTDDSILPIYQELIAAGLRIWVFSGDVDSVVPVTATRYSLAQLKLSTTTPWYPWYVKKQVGGWTEVYKGLTFATVRGAGHEVPLFKPRAAYQLFRSFLKGEPLPKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19195" PGL_stop="15343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19195" e_stop="18841"/>
            <exon e_start="16813" e_stop="16610"/>
            <exon e_start="15506" e_stop="15343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19195" e_stop="18841" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="18840" i_stop="16814" i_length="2027"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16813" e_stop="16610" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16609" i_stop="15507" i_length="1103"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="15506" e_stop="15343" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19195" stop="18841"/>
              <exon start="16813" stop="16610"/>
              <exon start="15506" stop="15391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19168" stop="18841"/>
              <exon start="16813" stop="16610"/>
              <exon start="15506" stop="15343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19085" stop="18841"/>
              <exon start="16813" stop="16610"/>
              <exon start="15506" stop="15401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACACTCCCGCCCTTGATGACCTATATCATCACCTCATTGCTATTCACACACAAATAGCAAATTTCTTTATTTCTTTCAGTTTCTCAACAACAATAATATGGCCAAACGAAGATTAGCTTTGCTTTTGATTTTAGCAACAATTGTATGTGTGAGTGCTGCAAAGTTAAACAAATATCAGGATGAAGAAGACGCTGATAGAATAATATCGCTGCCTGGACAACCCAAAGTTTCGTTCCATCAGTACTCAGGGTATGTCACTGTCAATCAGTTTGCTGGAAGAGCTCTATTTTACTGGCTTACTGAAGCTATTGATGAACCACTTACTAAGCCTTTGGTTATTTGGCTTAATGGAG : GTCCAGGATGCTCTTCAGTGGCCTATGGTGCATCTGAAGAAATAGGGCCATTCAGGATAAACAAGACGGCTTCGGGACTGTATTTGAATAAGTTTTCATGGAACAAATTGGCAAATTTACTATTCCTTGAAACTCCAGCAGGGGTTGGATTTTCCTACAGCAATAGGTCCTCTGATCTCCTTGACACCGGGGATATTCGCACTG : CTAAGGACTCACTTCAGTTCCTTATCCACTGGATGAATCGGTTCCCACGCTACAGAAATCGTGAAGTCTACATCACAGGGGAGAGCTATGCTGGTCATTATGTCCCTCAGCTAGCCAGAGAAATAGTTCATTACAATGCCAACTCTAAGAACCCAATCAACCTC</gDNA_template>
            <first_frame> *  H  S  R  P  *  *  P  I  S  S  P  H  C  Y  S  H  T  N  S  K  F  L  Y  F  F  Q  F  L  N  N  N  N  M  A  K  R  R  L  A  L  L  L  I  L  A  T  I  V  C  V  S  A  A  K  L  N  K  Y  Q  D  E  E  D  A  D  R  I  I  S  L  P  G  Q  P  K  V  S  F  H  Q  Y  S  G  Y  V  T  V  N  Q  F  A  G  R  A  L  F  Y  W  L  T  E  A  I  D  E  P  L  T  K  P  L  V  I  W  L  N  G   : G  P  G  C  S  S  V  A  Y  G  A  S  E  E  I  G  P  F  R  I  N  K  T  A  S  G  L  Y  L  N  K  F  S  W  N  K  L  A  N  L  L  F  L  E  T  P  A  G  V  G  F  S  Y  S  N  R  S  S  D  L  L  D  T  G  D  I  R  T   : A  K  D  S  L  Q  F  L  I  H  W  M  N  R  F  P  R  Y  R  N  R  E  V  Y  I  T  G  E  S  Y  A  G  H  Y  V  P  Q  L  A  R  E  I  V  H  Y  N  A  N  S  K  N  P  I  N  L </first_frame>
            <second_frame>  N  T  P  A  L  D  D  L  Y  H  H  L  I  A  I  H  T  Q  I  A  N  F  F  I  S  F  S  F  S  T  T  I  I  W  P  N  E  D  *  L  C  F  *  F  *  Q  Q  L  Y  V  *  V  L  Q  S  *  T  N  I  R  M  K  K  T  L  I  E  *  Y  R  C  L  D  N  P  K  F  R  S  I  S  T  Q  G  M  S  L  S  I  S  L  L  E  E  L  Y  F  T  G  L  L  K  L  L  M  N  H  L  L  S  L  W  L  F  G  L  M  E  :  V  Q  D  A  L  Q  W  P  M  V  H  L  K  K  *  G  H  S  G  *  T  R  R  L  R  D  C  I  *  I  S  F  H  G  T  N  W  Q  I  Y  Y  S  L  K  L  Q  Q  G  L  D  F  P  T  A  I  G  P  L  I  S  L  T  P  G  I  F  A  L  :  L  R  T  H  F  S  S  L  S  T  G  *  I  G  S  H  A  T  E  I  V  K  S  T  S  Q  G  R  A  M  L  V  I  M  S  L  S  *  P  E  K  *  F  I  T  M  P  T  L  R  T  Q  S  T   </second_frame>
            <third_frame>   T  L  P  P  L  M  T  Y  I  I  T  S  L  L  F  T  H  K  *  Q  I  S  L  F  L  S  V  S  Q  Q  Q  *  Y  G  Q  T  K  I  S  F  A  F  D  F  S  N  N  C  M  C  E  C  C  K  V  K  Q  I  S  G  *  R  R  R  *  *  N  N  I  A  A  W  T  T  Q  S  F  V  P  S  V  L  R  V  C  H  C  Q  S  V  C  W  K  S  S  I  L  L  A  Y  *  S  Y  *  *  T  T  Y  *  A  F  G  Y  L  A  *  W  R :   S  R  M  L  F  S  G  L  W  C  I  *  R  N  R  A  I  Q  D  K  Q  D  G  F  G  T  V  F  E  *  V  F  M  E  Q  I  G  K  F  T  I  P  *  N  S  S  R  G  W  I  F  L  Q  Q  *  V  L  *  S  P  *  H  R  G  Y  S  H  C :   *  G  L  T  S  V  P  Y  P  L  D  E  S  V  P  T  L  Q  K  S  *  S  L  H  H  R  G  E  L  C  W  S  L  C  P  S  A  S  Q  R  N  S  S  L  Q  C  Q  L  *  E  P  N  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0060F16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19174" stop="18841"/>
                    <exon start="16813" stop="16610"/>
                    <exon start="15506" stop="15343"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISSPHCYSHTNSKFLYFFQFLNNNNMAKRRLALLLILATIVCVSAAKLNKYQDEEDADRIISLPGQPKVSFHQYSGYVTVNQFAGRALFYWLTEAIDEPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKFSWNKLANLLFLETPAGVGFSYSNRSSDLLDTGDIRTAKDSLQFLIHWMNRFPRYRNREVYITGESYAGHYVPQLAREIVHYNANSKNPINL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 45232 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2056 bytes was the average size of a spliced alignment
$ 11760 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1960 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:48:05
-->
