<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-29 04:42:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7586" ref_strand="+" ref_description="SGN-M7586 C2_At3g01920 [cosii_markers]">
      <seq>ctcattctttctcaataggatgattgtaggtgtggaagagatgtcattggaaactaaagcactgggacactgtggagttaccggagcagtgcctctctcattccgtcgctctctctcttcattccccactcgcctgtcgttccacactgccgttcctccccaaacccgccgattccaatccttggcggtggttaagagaagtcctaaacgcctcaaatactcggctcctcgcttaactaaggaagatggattgctctatgttcaagttgatcaatttggctcggattcctggaagttggatccagttgttgaacttcttaaaggaggagctgttggagtcattcccacagacactctgtacgcaatagtttgtgatctgaacagtcattcagccattgaacgtcttcgtagaataaaagagatagaaccttcaaagccccttagtatcatttgtcgatctttccgcgacatagatacatatacaactggatttccccgtggtaatgcccaaggtcttacagacatttttcgagcagtcaagcactgtctacccggtccttacactttcatcttaactgctagcaaacagctaccaaaacaatgcacgagatacgggactgcaacttccaaatatgcttcaaggaaacatgttggtgttcgtatacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="+" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="13586" stop="16408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13905" g_stop="14126" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="241" r_length="222" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14127" i_stop="14243" i_length="117">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14244" g_stop="14359" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="357" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14360" i_stop="15114" i_length="755">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15115" g_stop="15168" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15169" i_stop="15275" i_length="107">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.776" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15276" g_stop="15300" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="436" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15301" i_stop="15477" i_length="177">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15478" g_stop="15600" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="559" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15601" i_stop="15997" i_length="397">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15998" g_stop="16108" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="670" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="+" ref_id="SGN-M7586" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13905" e_stop="14126"/>
          <exon e_start="14244" e_stop="14359"/>
          <exon e_start="15115" e_stop="15168"/>
          <exon e_start="15276" e_stop="15300"/>
          <exon e_start="15478" e_stop="15600"/>
          <exon e_start="15998" e_stop="16108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGTAGGTGTGGAAGAGATGTCATTGGAAGCTAAAGCATTGGGACACTCTGGAATTGCCGGAGCAGTGCCTCTCTCATTCCGTCGCTCTTTTTCTTCATTCCCCACTCGTTTGTCGTTCCACACTGCCGTTCCTCCCCAAACCCGCCGATTCCAATCCTTGGCGGTTATTAAGAGAAGTCCTAAACGCCTCAAATACTCGGCTCCTCGCTTAACTAAGGTTTGAATCTCTCAATTTTAATATGCCCTGTTCCTTGCTTATAGTTAGCAAGTACTCCAACTACGCATGACTTATTACTATTCTCTTTCTTATGTACTAATACTCGAAACGTGGTAGGAAGATGGATTGCTCTATGTTCAAGTTGATCAATTTGGCTCGGATTCTTGGAAGTTGGATCCAGTTGTTGAACTTCTTAAAGGAGGAGCTGTTGGAGTCATTCCCACTGACACTCTGTATGTTTTATTTCTCTTCTTTTTTTATCAATTAGTTTGTGTTTATACCTGAACGGCTTCTCTTGATGGTTAATTATACTTATTACTCTATCCATATTAACAATTTTGGTTCAACTTCTGATTGAGTCATGTAAAAATGAAAATGCTAATATAACCTTCCATGTATCTCCAAGTTTATTTTCTGTTCTACTATTCAATCATTTCGGTATTACTTGATACTAGGACTTGCATATCAATATCTTGTGTTAGGACTTACTCCCTTTTTTCCTTCATACCTCCATTAGTCAAACTAGGTAATCATATTTTACCTTTTCATTCCTTTCCTCAACAATAAAGCCTGAATTTTAGGCTTTTAAATATTATAGACTTTAAGCATCAAACCTACTTCACTTAATGGATTTAAGCTTCGCTGGAAGTGTTGCAACATGGTCATCCGATAATGCAATGTTGTTTTGAGATTAGATAGAGTGAGGTTGACTTTAGTCCGCTAGGGAATATGAGTGATCATCATTTTTTCAATCAGATGGATAGTAAAATGGACATACTGCTGGAAGCCATTCCCAAACAGTGACATTTGGATGATAATCATCACGTTCCAATCACTGCAAGTATAAAGCATCTTAATTCTTTGCAATATGAAGTTGTGTTATATAAAAATGAATTGGAGGAGTATCAATTTGGTTAAGAAGTGTACTTTAAGCCTCGATCAGAATCTTTTATAGCCTGAATTCTGATATTTGACATCTTTCAAACAGGTATGCAATAGTTTGTGATCTGAGCAGTCATTCAGCCATTGAACGTCTTCGTAGGTTAGTTCTACTAAACCTCTCTGGTAGCGTAAATTAATGCTTTACATTTCTTTCTCGGGTCCCTTGATGACAATGTCCATTTCTTTTTTGTTTGTTCTTTTGGCCAGAATAAAAGAGATAGAACCTTCAAAGGCAAGTTGCATTTATGTTGCTGAACTGAACCATTGCATCAGATAAAGCAACCCAGTTGATGCTGGATCTGATTCAATGCCTTTATTTTTTGTTTCCTTCCCTGCCTATGTACCTCCATATTTGTCACTTGTACTGTCCTTTATGCTGTCTTCTTTACGATCTTCTACGATTTTACAGCCCCTAAGTATCATTTGTCGATCTTTCCGCGACATAGATACATATACAACTGGATTTCCCCGTGGTAATGCCCAAGGTCTTACAGACATTTTTCGAGCAGTCAAGCACTGTCTACCTGGTCCTGTAAGTATGTGTAACGTGTTCTATAGACGATTATTGTGCTGAAAATTGTTAACAAATTTTCCGATTTAGATTTTTAATAAATCTGGTATACGTATGTCGGGAGTGTAGGAAGTCTAGTGATACCCTAGAGTCGAATTTCTTCATCAGGTTTTGCGCTATGTGGTATGATAGTTTCTTTTGCTACTTAAATTCCTTGTTGGTTGTCGACTTACTTCATGCTTATTTTTTCCTTTATTCTTTACGTGCGGGGTGGGTGGGTGGGGTGGGGGTGCATGAGGTGACTTTAAGATTGTTTGACTCATTAAATCTTTGACATTTTGGGTACCCAGGTCTGAGTAGTCCTGTAGATATCTTGATACTGATAATGTACCTAAACTATTAATCACCTGTGTGGCAGTACACTTTCATCTTAACTGCTAGCAAACAGCTACCAAAACAATGCACGAGATACGGGTCTGCAACTTCCAAATATGCTTCAAGGAAAAATGTTGGTGTTCGTATACCTGAT</genome_strand>
        <mrna_strand>ATGATTGTAGGTGTGGAAGAGATGTCATTGGAAACTAAAGCACTGGGACACTGTGGAGTTACCGGAGCAGTGCCTCTCTCATTCCGTCGCTCTCTCTCTTCATTCCCCACTCGCCTGTCGTTCCACACTGCCGTTCCTCCCCAAACCCGCCGATTCCAATCCTTGGCGGTGGTTAAGAGAAGTCCTAAACGCCTCAAATACTCGGCTCCTCGCTTAACTAAG.....................................................................................................................GAAGATGGATTGCTCTATGTTCAAGTTGATCAATTTGGCTCGGATTCCTGGAAGTTGGATCCAGTTGTTGAACTTCTTAAAGGAGGAGCTGTTGGAGTCATTCCCACAGACACTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCAATAGTTTGTGATCTGAACAGTCATTCAGCCATTGAACGTCTTCGTAG...........................................................................................................AATAAAAGAGATAGAACCTTCAAAG.................................................................................................................................................................................CCCCTTAGTATCATTTGTCGATCTTTCCGCGACATAGATACATATACAACTGGATTTCCCCGTGGTAATGCCCAAGGTCTTACAGACATTTTTCGAGCAGTCAAGCACTGTCTACCCGGTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................TACACTTTCATCTTAACTGCTAGCAAACAGCTACCAAAACAATGCACGAGATACGGGACTGCAACTTCCAAATATGCTTCAAGGAAACATGTTGGTGTTCGTATACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1791" ref_strand="+" ref_description="SGN-M1791 T1142 [cos_markers]">
      <seq>ctagaatttcttatccaaaacaaaatatgcctcttatcccagaagagcctttgctggcctctaacccagatcgattctgtatgttcccaattcagtatccacagatttgggaaatgttcaagaaagccatggcatctttctggacggcagaagaagtcgatctctccaccgatactcgtcactgggaaaacctaacatccggcgaaaggcatttcatcactcatgttcttgccttttttgccgcctcagacggcatcgttttagagaacctcgctggatggttcatgaaagatgtccaggttgccgaggctcgtgctttctatgggttccaaatcgccattgagaatatccattccgagatgtacagtttgctgttggagtcgtacatcaaggattctgacgaatagagcaaattgttccgtgcaattgagacaatcccttgcgttgaaaagaaagcgaaatgggcccttcgttggatcgatgggtccgaaactttcgcggagcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="+" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="18607" stop="19713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18907" g_stop="19413" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="+" ref_id="SGN-M1791" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18907" e_stop="19413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAATTTCTTATCCAAAACAAAATATGCCTCTTATCCCAGAAGAGCCTTTGCTCGCCTCTAACCCAGATCGATTCTGTATGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGCGGAGCGTT</genome_strand>
        <mrna_strand>CTAGAATTTCTTATCCAAAACAAAATATGCCTCTTATCCCAGAAGAGCCTTTGCTGGCCTCTAACCCAGATCGATTCTGTATGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTTCAAGAAAGCCATGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCCGGCGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGATGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAATAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGCGTTGAAAAGAAAGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGCGGAGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8695" ref_strand="+" ref_description="SGN-M8695 C2_At5g14140 [cosii_markers]">
      <seq>tttgataggcaaatcgaattagggtttccgttctggagcccaactcgtcgacgttttggtcctgatgatcccttcttcgcttacggtaacattcaaagagagcttctcgctaagcaggttgcattggatttgactgaagaagagaaccagttagttcaaaatagtatcacagatgacgaaatcagcaatctcttctgtccaatcattggttgtggtgcacagatgaaaaatctggatgactttgaagaccactatgttacacgacatactgcatcttgttctgtatgctctcgagtttacccaacatcacgcctgctcagcatacatgtgtcagaggctcatgattccttttttcaggcaaaagctgctcgaggctttcccatgtatgagtgccttgtggaaggctgtgatatcaagttgaaaagctacaaaagcaggcagcaacatcttgttgacaagcataaatttccagcatcttatgagttcttcagaaaagctcgtccatcaaaaaaacagaggctgaagccgcatcataaacaagcatctaataagactcaggagaagtcaagtgcaatgcaagttgaggaagaaacaatagacaatctcgtttcagcggtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="-" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="24321" stop="20651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24021" g_stop="23905" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23904" i_stop="23821" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23820" g_stop="23753" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="185" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23752" i_stop="22519" i_length="1234">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22518" g_stop="22320" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="384" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22319" i_stop="21188" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21187" g_stop="20951" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="621" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="-" ref_id="SGN-M8695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24021" e_stop="23905"/>
          <exon e_start="23820" e_stop="23753"/>
          <exon e_start="22518" e_stop="22320"/>
          <exon e_start="21187" e_stop="20951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAGGCAAATCGAATTAGGGTTTCCGTTCTGGAGCCCAACTCGTCGACGTTTTGGTCCTGATGATCCCTTCTTCGCTTACGGTAACATTCAAAGAGAGCTTCTCGCTAAGCAGGTTCGTTCCTTTTCCCTCCTCTCTATCCTCTCCATAATTTGAACTAGCGATCTATCTGTTCACTCCCTTTTTCTTCATTTCCAGGTTGCATTGGATTTGACTGAAGAAGAGAACCAGTTAGTTCAAAATAGTATCACAGATGACGAAATCAGGTATACCTATTGAAGCTCTTCCATAGTTTATCGGATTTATATACTGAGAAACATCAGAAGACAGTGACATTAAACTATAATTTTGAAGGATATTTTAACAGAATTCAGGTTCACGTTCTTAATCAGCTGCTCTTCCCTTTTTGTTGAGATTGAGGAAATATGCACTTATCTATGTGTCTGCTAGTAGCCTCAAGTACAAAAGAGAAGTTGGAATAGTTAGGATATACGTTAGGACGTGGTTGCAAAATTCTAATTAAATATGTTTTGCTGTTTTTTGTGTTGCAAAGTCGAGTGAAAGATCAGAGCCTTGATTATAGATTAAGAATAGGTGAGAATCGTGAGATGTTGATCCTTAGATACTAATATCTTCATGATGTCAGCTGTCTTTACATGCTTTTTAATGCAGTAACCTGCGAAGGTTGCTGCAGTGACGAGTTTAATACTGGGCATTTCTTTATAGTTGAATGTTGTTGGCTTTTTATCAAACACCCTTACATACTCAAGCGAAGGGTATTAAACACTTCTTGGTATACAGATAAGTTGAGAGCTGCATCCGCACAAGGAAGGTTAGGTGCACAAGCAAAAGGAAGATGGTGACAGAACTGAAAGGGAAGAAAAATTCCCCAAAAGAGTGCTTAATGTCAGTATACTGATGAATTTTCTAATAAAAATAAGCTTAGGAAAGCGGGCAACGGCTACCTCTTTTTTTTCAGTTCTGTGGTCAGCCCAAAATCGAGAACGCAGAAGTTAAGGGCTGGATTAAATTGTATCTTTATGTCTAGATATTTACAGGAGCTGAGATAATAAAGAAGAAACTAGAGGCTAACTTTACCATATATCGGTTTCCACTTTCTGGTACTAGTCAGAATATTGATCTGCAGGAAGTTTTGCATAGATTGAATAATGACCTAGTTTTGTGTTTACTATGTGATACAATCACTGTATCACTTTCTCAGATCTTCTTGGCCTAGCCACAATATGCTATAGTGCTCATTTGCACCTGCATTTACTGGTGCTGAGGTCCATTTTTCTTCTTTATTACTGTAAATTATCAAGATCCTAATTATGTATTGTTTAACTTGTTTTTTTTTTTTTTAAATGGATGTCATGTTCTTAACTTGTTATTTTTCTGTCAATCTTGAGGTGATTTCTGGGTTTGTTTACTATAACAAATTTTAGGGGGATGTATTTATACATAACTAATTTCTGATAAAATTGATTAAATGCTTGACAGCAATCTCTTCTGTCCAATCATTGGTTGTGGTGCACAGATGAAAAATCTGGATGACTTTGAAGACCACTATGTTACACGACATACTGCATCTTGTTCTGTATGCTCTCGAGTTTACCCAACATCACGCCTGCTCAGCATACATGTGTCAGAGGCTCATGATTCCTTTTTTCAGGCAAAAGCTGCTCGAGGCTTTCCCATGGTAACATTTTATCTCATAGTTTTCTTTAGGGTGTCCCATAGAAAATGAGGCAAACCCCCTTACACTGTTTAAACGTATTAGGAATATATCTGAGAAGGAAGAAAGTTGAATCAGCAAAATCACACGATTAAACAACTGATGAATTGTTTGTTGTATCATCCAATTCGCGCTCGCTCTAAAAAATGGACTATCCATGCTATAAATAGATAATCATGAAGAACTGTCATTTTCTAGAAAACACTTCTTTCGGTAATAAATCAATCCTTGCACTAAAAAGAGATTTCTAAAACAAACAATGGCTGGAGAATTAAGACTGTACCGACTTTAAATCTGGTATAATTTTTTTCTTCTCTCTATTTCAAAGTAAAGTATAGTCTGAATTCTCCAGCCATTGTCTATTTCCGAAATCATTTTGAGGTAAGGAATTGATTTATTATTGAAAGAAGAGTTCTCTGGTAAATGACAGTTCTTGTTGATTCTCTATTTATATTGCGAATGACTTTTTAAGAGTGAGCATGAATTGGATGATTCAACAAACAGATTTTCAGTTGGTGAATCATGCCTTTTTGTTGATTCAACTTTCTTCCTTCTCATGCATATTCTAAATGTAGCATGCAGTTCCTGTTTGTTAAGGTAATAGCTGAAGGGATTGTGCAGGCACATACGTGAACAGTTTAGGTGCATCGTCTGGGTTAATGTGGGGGTTATACATAACCCATCCTGAATTTGCATCATCTTGCCCTGTCCCTTCCCAAGGAGATAGATGTTTGCATGTCTTTCCAAGTTTATAAGCTGCATGTTATCGGCTTTCTTGATCTTAGTGGTTTACTGGTTGAGGAGTTAACTTCTGACCACTAGGTCAAGTGTCAAGTCTGATAAACAGAACAAAACCAACAGGATAGGTGTTCTAAAATAAAATACTTTTAAAGCTTCTGTAAAATTGTAAATACATAAATAAATTATAAGCTGCATGAATCTTTGTTGCAGAATTGGCTCTCTGATTGTGGTTGGTCATGTATCTTGTATGTGTTTAGTCTGTTCAAAGAGAGTTATGTATGAGTAACAGTCTGTTTCAATCTTTTTTTAAAATGTCTGGATGTAGCTGTTTACTGGAATTCTTGTTGTCCTGTAGTATGAGTGCCTTGTGGAAGGCTGTGATATCAAGTTGAAAAGCTACAAAAGCAGGCAGCAACATCTTGTTGACAAGCATAAATTTCCAGCATCTTATGAGTTCTTCAGAAAAGCTCGTCCATCAAAAAAACAGAGGCTGAAGCCGCATCATAAACAAGCATCTAATAAGACTCAGGAGAAGTCAAGTGCAATGCAAGTTGAGGAAGAAACAATAGACAATCTCGTTTCAGCGGTATCG</genome_strand>
        <mrna_strand>TTTGATAGGCAAATCGAATTAGGGTTTCCGTTCTGGAGCCCAACTCGTCGACGTTTTGGTCCTGATGATCCCTTCTTCGCTTACGGTAACATTCAAAGAGAGCTTCTCGCTAAGCAG....................................................................................GTTGCATTGGATTTGACTGAAGAAGAGAACCAGTTAGTTCAAAATAGTATCACAGATGACGAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTCTTCTGTCCAATCATTGGTTGTGGTGCACAGATGAAAAATCTGGATGACTTTGAAGACCACTATGTTACACGACATACTGCATCTTGTTCTGTATGCTCTCGAGTTTACCCAACATCACGCCTGCTCAGCATACATGTGTCAGAGGCTCATGATTCCTTTTTTCAGGCAAAAGCTGCTCGAGGCTTTCCCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGTGCCTTGTGGAAGGCTGTGATATCAAGTTGAAAAGCTACAAAAGCAGGCAGCAACATCTTGTTGACAAGCATAAATTTCCAGCATCTTATGAGTTCTTCAGAAAAGCTCGTCCATCAAAAAAACAGAGGCTGAAGCCGCATCATAAACAAGCATCTAATAAGACTCAGGAGAAGTCAAGTGCAATGCAAGTTGAGGAAGAAACAATAGACAATCTCGTTTCAGCGGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2333" ref_strand="+" ref_description="SGN-M2333 T1874 [cos_markers]">
      <seq>ccatgtatcctggcttacctagtcgccttgagaaagaaattttggaccgctatcttgatgttgttctgaaggggaacaaagatggtttgaagaaattgcgcttacgaatagaagatccacccagaagaaagcatatggtgtatctcggtggtgcagttctggccggaattatgaaggatgcccctgagttttggatcaatagacaagattatttagaagagggagttgcatgcctaagcaagtgtggtcaggcatgatttctacatgtccatgaattgtttaagctctggctatcttttcaaagaaaagcttggaaatgtacagatcaagacgtgctggaaatgactctttaccattcaaatagaagttcttgtactgtattttgccaaaaaattctcaaagagacaggacgtgtcatacttgaatgtttttactgcatctgctttccatgagttgtttaaggcttgattttgaacttgtacagtccgtattgaagtaaaacattgctaattggaactgctttccgttcctactcttctgtgaagtattaaaatgtgtgctgaaacataagcagcttattccgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="+" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="59953" stop="63067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60253" g_stop="60277" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60278" i_stop="61149" i_length="872">
            <donor d_prob="0.870" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61150" g_stop="61216" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="92" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61217" i_stop="61575" i_length="359">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61576" g_stop="61659" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="176" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61660" i_stop="62357" i_length="698">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62358" g_stop="62775" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="594" r_length="418" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="+" ref_id="SGN-M2333" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60253" e_stop="60277"/>
          <exon e_start="61150" e_stop="61216"/>
          <exon e_start="61576" e_stop="61659"/>
          <exon e_start="62358" e_stop="62775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTATCCTGGCTTACCTAGTCGGTAACTTACTCAAAATACTCTTCCTTATTATAAAGCTTTGAGAACTTGGAGCTGAGTAGTGCAATTGTGCGTGGTTGATTCTAAATGCTACATTATTGTCATACAGACTAGGAAGTTTTAACGGGTGTGACAGTTTGCTTTGAGTTTATGAACCAAAGTATATCCTTGAATTATTTTTTCCTCAGGACTAATGTTTAATCAATCTGGCAGAGAAATTTGAACTGTAAAACTGTTATGCTATAACTTTGATAACACTCTTTTATTGTGCGAAGAACTCTAATTCACCTCCCTGTGGATTTTGAATTTTATGATTCTCCTCTTACGGTATCAAAATTTTGCTGATTCCCTCCTCCTGGTAGCAGTCAGCTTTGGTATATCTGACTGATGACTTATTCCTCATAGTTGTTCTATTTTTCTCCTGCTCATAAGTACCCTTCTGAAATTGTTAGTATCATAACGACCATGAAATGCATGAAGGCATATCTAAAAATGCAAATCAACGTGAAATATATATTCATTTTCACTACATACTATTTTAACTCTCATCTTGTTACGTATCATAAATTAGAGTATGAAATTCTATTCGAGAGGATATGAGTATTGTTTAGAAATGTGCTATATTAGGAAATTTAGGTATACACTTTAATGCATGAAGAATTTCTGTTAAGAATATCCGTGAGCTGTCATCAAGAAGGACTTTCATCTCTTTGTGATTTATTCCTTTGAACTTTACTTTTGCAGTTAACATTTCTTTTGGTTTACTGTGGGAATATAAGGAACGAAACTCTTTCTTACCCACCTCATGACCACACTCATCATATTCTTGTTTCCTTTAATAACAGCTATTTTCCCTTCTTTTTAAACATTGACAGCCTTGAGAAAGAAATTTTGGACCGCTATCTTGATGTTGTTCTGAAGGGGAACAAAGATGGTTTGAAGGTACTGTGTGACTCTTATTTGTTCTTTTCACAATTTCTTGAGGTTTTTGGTTTATGAATAAGGTTTATGCAACTAAGTTGCATTTATTCAAATAGTCTTACCCACAAACCACAATAAAATACCTCAATCTCACTGGTAGCTGCAGCTTATGGTGATTTCGGCTCTATATGAGGTCAAGTCAATCAAGAGATGGAGATAAGAAAGTAGTTGGAAAAGTACGAGTAGGGTTTAACATATCTAGGGAGTTGGATTGCATTGCCTACAATTGCTGTCTTTTATGATGCATTTCTTGGTTTTCTTTAAGTTGTTGAAATTTTCTCTATTTTTGAAAATTTTATTTTATATGTTTTCTGCAATAGAAATTGCGCTTACGAATAGAAGATCCACCCAGAAGAAAGCATATGGTGTATCTCGGTGGTGCAGTTCTGGCCGGAATTATGAAGGTATGGTGGTATCGATTTCCTCTCTGTAGCCCCATCTCTGCTCCTTGCTTTTTCATGCATATAAAAAAGAATTTATTCCCAGGAGAAACAAAAAGAAAGCTAATAAGATACATCCTTTTCTAATCTGTGTACACTTTTTCATAATTTTCTGGATTTGAATATTCTATTTCTGTCCTCCATTGAAGTGGTTGTGGCACATGTTGGATTATACTATTTTGATATGATTTAGGCCCGTGCAATCATCAGATTCAGGCACAAGGAAATTTGTGTTTCACATCCCTCCGATCCTTCTCTTTTTCTTGTTCTTCCTCTGCAATTGATCAAATAATCTGTGTATGAGAGATGTTCCTGTGGCTGAATGCAACTAAATTAAATAAAGTCCACTTAGTAGAGCAAGTAAAAGAATTTTATGCCGTAACTTAAATGTTTAATATTATGCTGAAATCATAGTGGCTGGTATATTTCCATGTTTAAATTATTCTTGCTGTCCTATTCTTCCAGTCAGGAAGCTCATTCACCTAAAAAAATAAATTCTCGTCATTCTTCTCCTTGAGCGTTCTTAAGTTTTTTCTTTTCATTATGCCAAAAAGGAAAAGGATTGCAATGAATCAATGCACACCCTAATTGAAGAGCATACAATTTGAAAGCAACATTATTATGTTAACAGAAATAAGTAGATAATTGAATAATTTCTGCAGGATGCCCCTGAGTTTTGGATCAATAGACAAGATTATTTAGAAGAGGGAGTTGCATGCCTAAGCAAGTGTGGTCAGGCATGATTTCTACATGTCCATGAATTGTTTAAGCTCTGGCTATCTTTTCAAAGAAAAGCTTGGAAATGTACAGATCAAGACGTGCTGGAAATGACTCTTTACCATTCAAATAGAAGTTCTTGTACTGTATTTTGCCAAAAAATTCTCAAAGAGACAGGACGTGTCATACTTGAATGTTTTTACTGCATCTGCTTTCCATGAGTTGTTTAAGGCTTGATTTTGAACTTGTACAGTCCGTATTGAAGTAAAACATTGCTAATTGGAACTGCTTTCCGTTCCTACTCTTCTGTGAAGTATTAAAATGTGTGCTGAAACATAAGCAGCTTATTCCGTAATCTGGTGC</genome_strand>
        <mrna_strand>CCATGTATCCTGGCTTACCTAGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGAGAAAGAAATTTTGGACCGCTATCTTGATGTTGTTCTGAAGGGGAACAAAGATGGTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................AAATTGCGCTTACGAATAGAAGATCCACCCAGAAGAAAGCATATGGTGTATCTCGGTGGTGCAGTTCTGGCCGGAATTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCCCTGAGTTTTGGATCAATAGACAAGATTATTTAGAAGAGGGAGTTGCATGCCTAAGCAAGTGTGGTCAGGCATGATTTCTACATGTCCATGAATTGTTTAAGCTCTGGCTATCTTTTCAAAGAAAAGCTTGGAAATGTACAGATCAAGACGTGCTGGAAATGACTCTTTACCATTCAAATAGAAGTTCTTGTACTGTATTTTGCCAAAAAATTCTCAAAGAGACAGGACGTGTCATACTTGAATGTTTTTACTGCATCTGCTTTCCATGAGTTGTTTAAGGCTTGATTTTGAACTTGTACAGTCCGTATTGAAGTAAAACATTGCTAATTGGAACTGCTTTCCGTTCCTACTCTTCTGTGAAGTATTAAAATGTGTGCTGAAACATAAGCAGCTTATTCCGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M100-R" ref_strand="+" ref_description="SGN-M100-R TG154-R [rflp_markers_reverse]">
      <seq>ctaccagtgagattgaggtattttattgtggtttgtgggtaagactatttgaataaatgcaacttagttgcataaaccttattcataaaccaaaaacctcaagaaattgtgaaaagaacaaataagagtcacacagtaccttcaaaccatctttgttccccttcagaacaacatcaagatagcggtccaaaatttctttctcaaggctgtcaatgtttaaaaagaagggaaaatagctgttattaaaggaaacaagaatatgatgagtgtggtcatgaggtgggtaagaaagagtttcgttccttatattcccacagtaaaccaaaagaaatgttaactgcaaaagtaaagttcaaaggaataaatcacaaagagatgaaagtccttcttgatgacagctcacggatattcttaacagaaattcttcatgcattaaagtgtatacctaaatttcctaatatagcacatttctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="-" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="61655" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61355" g_stop="60880" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="-" ref_id="SGN-M100-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M100-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61355" e_stop="60880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAGTGAGATTGAGGTATTTTATTGTGGTTTGTGGGTAAGACTATTTGAATAAATGCAACTTAGTTGCATAAACCTTATTCATAAACCAAAAACCTCAAGAAATTGTGAAAAGAACAAATAAGAGTCACACAGTACCTTCAAACCATCTTTGTTCCCCTTCAGAACAACATCAAGATAGCGGTCCAAAATTTCTTTCTCAAGGCTGTCAATGTTTAAAAAGAAGGGAAAATAGCTGTTATTAAAGGAAACAAGAATATGATGAGTGTGGTCATGAGGTGGGTAAGAAAGAGTTTCGTTCCTTATATTCCCACAGTAAACCAAAAGAAATGTTAACTGCAAAAGTAAAGTTCAAAGGAATAAATCACAAAGAGATGAAAGTCCTTCTTGATGACAGCTCACGGATATTCTTAACAGAAATTCTTCATGCATTAAAGTGTATACCTAAATTTCCTAATATAGCACATTTCTAAAC</genome_strand>
        <mrna_strand>CTACCAGTGAGATTGAGGTATTTTATTGTGGTTTGTGGGTAAGACTATTTGAATAAATGCAACTTAGTTGCATAAACCTTATTCATAAACCAAAAACCTCAAGAAATTGTGAAAAGAACAAATAAGAGTCACACAGTACCTTCAAACCATCTTTGTTCCCCTTCAGAACAACATCAAGATAGCGGTCCAAAATTTCTTTCTCAAGGCTGTCAATGTTTAAAAAGAAGGGAAAATAGCTGTTATTAAAGGAAACAAGAATATGATGAGTGTGGTCATGAGGTGGGTAAGAAAGAGTTTCGTTCCTTATATTCCCACAGTAAACCAAAAGAAATGTTAACTGCAAAAGTAAAGTTCAAAGGAATAAATCACAAAGAGATGAAAGTCCTTCTTGATGACAGCTCACGGATATTCTTAACAGAAATTCTTCATGCATTAAAGTGTATACCTAAATTTCCTAATATAGCACATTTCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M100-F" ref_strand="+" ref_description="SGN-M100-F TG154-F [rflp_markers_forward]">
      <seq>ctaccagtgagattgaggtattttattgtggtttgtgggtaagactatttgaataaatgcaacttagttgcataaaccttattcataaaccaaaaacctcaagaaattgtgaaaagaacaaataagagtcacacagtaccttcaaaccatctttgttccccttcagaacaacatcaagatagcggtccaaaatttctttctcaaggctgtcaatgtttaaaaagaagggaaaatagctgttattaaaggaaacaagaatatgatgagtgtggtcatgaggtgggtaagaaagagtttcgttccttatattcccacagtaaaccaaaagaaatgttaactgcaaaagtaaagttcaaaggaataaatcacaaagagatgaaagtccttcttgatgacagctcacggatattcttaacagaaattcttcatgcattaaagtgtatacctaaatttcctaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="-" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="61655" stop="60592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61355" g_stop="60892" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="-" ref_id="SGN-M100-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M100-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61355" e_stop="60892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAGTGAGATTGAGGTATTTTATTGTGGTTTGTGGGTAAGACTATTTGAATAAATGCAACTTAGTTGCATAAACCTTATTCATAAACCAAAAACCTCAAGAAATTGTGAAAAGAACAAATAAGAGTCACACAGTACCTTCAAACCATCTTTGTTCCCCTTCAGAACAACATCAAGATAGCGGTCCAAAATTTCTTTCTCAAGGCTGTCAATGTTTAAAAAGAAGGGAAAATAGCTGTTATTAAAGGAAACAAGAATATGATGAGTGTGGTCATGAGGTGGGTAAGAAAGAGTTTCGTTCCTTATATTCCCACAGTAAACCAAAAGAAATGTTAACTGCAAAAGTAAAGTTCAAAGGAATAAATCACAAAGAGATGAAAGTCCTTCTTGATGACAGCTCACGGATATTCTTAACAGAAATTCTTCATGCATTAAAGTGTATACCTAAATTTCCTAATATAGC</genome_strand>
        <mrna_strand>CTACCAGTGAGATTGAGGTATTTTATTGTGGTTTGTGGGTAAGACTATTTGAATAAATGCAACTTAGTTGCATAAACCTTATTCATAAACCAAAAACCTCAAGAAATTGTGAAAAGAACAAATAAGAGTCACACAGTACCTTCAAACCATCTTTGTTCCCCTTCAGAACAACATCAAGATAGCGGTCCAAAATTTCTTTCTCAAGGCTGTCAATGTTTAAAAAGAAGGGAAAATAGCTGTTATTAAAGGAAACAAGAATATGATGAGTGTGGTCATGAGGTGGGTAAGAAAGAGTTTCGTTCCTTATATTCCCACAGTAAACCAAAAGAAATGTTAACTGCAAAAGTAAAGTTCAAAGGAATAAATCACAAAGAGATGAAAGTCCTTCTTGATGACAGCTCACGGATATTCTTAACAGAAATTCTTCATGCATTAAAGTGTATACCTAAATTTCCTAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7894" ref_strand="+" ref_description="SGN-M7894 C2_At3g26990 [cosii_markers]">
      <seq>ttgtttcttacaattcccttcgccgctactcacttctgctgcattctggtttgtctttcttcttcctttttttgcccccaccttattctgattctagggttatatatatttttttaattcttgatttttcttgtttgcgagcttctttaaccctagaaacctaggaattgaactcacatgccaattctgatatgttagttttttttgtttttttttaaaaaaacttttccttctgttcttttttttttgtttagactttagagagaaacttataagtaaacataagtaatccaatgttcaaaggctaaacatccaatcttttcttaactggggcagcaaatagaccctatctgttttttcaaaattccaaaagagtgttcttttctcataaaggtctgcttgcggcttactagttgatgaatattgcttccgaaacaatggggagcacattcaatacgcaaattttggtggataagctggaaatgcttaatagttcacagcaaagcattgaaactttatcacattggtgtatttttcacatgaccaaagcaaaacaagttgtggaaacctgggcccagcaattccattgctcaccacgtgaacagagattgtcatttctttaccttgcaaatgacatccttcagaatagtcggagaaagggtgcagaatttgttgctgaattttggaaggttcttccagatgctcttcgtgatgttattgaaaatggaaatgagtttggaagaaacgctgctttgcggctgatcagtatctgggacgagagaaaagtctttggttctcgagggcagatcctgaaggaagagtttgctggaaagcatgttgggaatggaaagcatagtggaggcaaagtgagaaactcagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0061K08-HZI65/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0061K08.1" temp_strand="-" temp_description="C02SLe0061K08.1  AC215457.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0061K08 sequenced_by:kribb upload_account_name:korea">
        <position start="89987" stop="84403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89687" g_stop="89315" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89314" i_stop="88494" i_length="821">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88493" g_stop="88354" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="513" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88353" i_stop="87728" i_length="626">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87727" g_stop="87480" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="761" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87479" i_stop="84823" i_length="2657">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84822" g_stop="84715" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="869" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84714" i_stop="84601" i_length="114">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84600" g_stop="84587" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="883" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0061K08.1" gen_strand="-" ref_id="SGN-M7894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0061K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89687" e_stop="89315"/>
          <exon e_start="88493" e_stop="88354"/>
          <exon e_start="87727" e_stop="87480"/>
          <exon e_start="84822" e_stop="84715"/>
          <exon e_start="84600" e_stop="84587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTTACAATTCCCTTCGCCGCTACTCACTTCTGCTGCATTCTGGTTTGTCTTTCTTCTTCCTTTTTTTGCCCCCACCTTATTCTGATTCTAGGGTTATATATATTTTTTTAATTCTTGATTTTTCTTGTTTGCGAGCTTCTTTAACCCTAGAAACCTAGGAATTGAACTCACATGCCAATTCTGATATGTTAGTTTTTTTTGTTTTTTTTTAAAAAAACTTTTCCTTCTGTTCTTTTTTTTTTGTTTAGACTTTAGAGAGAAACTTATAAGTAAACATAAGTAATCCAATGTTCAAAGGCTAAACATCCAATCTTTTCTTAACTGGGGCAGCAAATAGACCCTATCTGTTTTTTCAAAATTCCAAAAGGTAGGATTGGGATGGCTGGTGATTAATTCTAACTTTTAGAAAGGGTACAATTGGACATTAAATGTTATTTCAACTATTAAGTTGATCAAAAGAATGGTATTTTAATTGTTAAAGCTTGTCTAAATTACAATTTTGATTTTTCAAAGATTCTTTGCAAGTTATGGGAGTGAATGTGTGTTAAATTGGTTCAGTTTGCTATATTTGCTCTAGTTAAACAGAGATGCACACAATGTGTGTATGGTATCTTTTTATCCTCGAAAAAAGCGTTAATGGTATAATAGAATGAATTGCAACTGCAAGCATGGAATATATTAGAGGGCAAACATTATAATACGTTTTACATCTATGTATCCTTTATGAGATCTGAAGAGCTATTCGGTAAATGAATCTTAGGGGAAATATTCAGCTGCCAGAAATCCAGAAATCATCCCCATACTCCGTTGGGAGATCCCCTTTTTTTTAAAAAAAATTTGGTAGCTTTTTAGGAACTACTTGTAAGGACTCATTTTTCAGGAGCTATCCTTAAGTGGTCAGGACACATAACAGGCATCCTGGAATGCAATTTGTGGACTATTCTATATTGTTAAGAGACTAACTGTAAACATAGACTACTTATTTGCTTCGAAACATTCTTGTCCGCTTCTTCAACATGGATCCTTTGACCCATAAAAGTGCTTCCTTTTTCTAAATTTGGCATCATTCTCATGTCTATACTTGTGATTTGACAGGATTTGTCCTACTAAATTATTATTATCTAGTCAAATTCTTTTTCTTCGCTCCCACAAAAGTGATATTGTGCTTATTTAGTTTGTTTATGGCAGAGTGTTCTTTTCTCATAAAGGTCTGCTTGCGGCTTACTAGTTGATGAATATTGCTTCCGAAACAATGGGGAGCACATTCAATACGCAAATTTTGGTGGATAAGCTGGAAATGCTTAATAGTTCACAGCAAAGCATTGAAAGTATCCATTAACTTCTACATGCTACTTAGATAATTGTTTGATCTTAAATTTTTTCTTTTTAAGTAAAATAATAATTTGATCTTATGGTATCCCCTCGATCCAGTTTTTCAGGAAACAAATTGGTGGGGCATGGAAATTAACTCCATGTTTGAAAACTAGGGAGAAACAAAGGAGATTATAATGAACAAAAAATAAGTTATTTTCTTTTTGTTTAATTTGGTGGATAAGAAAAAGATTGAGGACTAGTGTTGGACTTTCGTCATCCCTTCGGGGTGTCCTAGTGGTTTGGGCTTGGGACATACATGTTGGAGGGCTCAAGTTCGAAAACCCTTGCCGGCGAAAACATGGGGTTGTTTGTGTTTTGGGTTGAGCTCGTTGCATCAGACTTGCCTAGTACGGGTAACATCTCCTGTGTGGTTTGCGAGCTATTACATAGAACCAGAGGTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGTGACTTTTCCTTATCATAGAATATTGGACTTCCGTTCTCTTGAATTTGAATTTGTGGGTACAGTAGGAAAAAATATTCTCTCATTTATTTCTTTAGCAATTATTTATTTAACTAATGCTTGCTTTTGTAATCCTCAACTCCAACTAGCTTTATCACATTGGTGTATTTTTCACATGACCAAAGCAAAACAAGTTGTGGAAACCTGGGCCCAGCAATTCCATTGCTCACCACGTGAACAGAGATTGTCATTTCTTTACCTTGCAAATGACATCCTTCAGAATAGTCGGAGAAAGGGTGCAGAATTTGTTGCTGAATTTTGGAAGGTTCTTCCAGATGCTCTTCGTGATGTTATTGAAAATGGAAATGAGTTTGGAAGAAACGCTGCTTTGCGGCTGGTATGTTTCTCTAGCTCCTTATTTTTAGCTCCACTATGTAGCCATAAGGGGGTAAATGAGTTTGATTAGTTTTAGTTCACCCATTTGTGTGTAGCATTTGAGACACATATTTGTGGATGATTAGTATTCCGAGAGGAAGACCTATGCATCTAATTCTGAATTTCCTGACAAATCTCTTCTTTGAGTTGTTAAGATTCCCTAAGATTTCCCTATACATGGTGTTCTGATCAAGTAAATAGGTAACATTCAATCAAGAGGGAGGTGTATTTAGTTTCACTATACTAGATTGTAGATTTATCTGAGAGAGAAGCGATGATAGTACGATAGCATCAAATTAAGGAGAATACAAAAGGTGTATTGCTCAAATGATGAGTAATCATGAATATGTCACATGATACCCACAACAAGGTAAGAAAATAAATACAAGTCTACGTCAGACTACTTGCTACTTGAGAGATTGAACTTAGGAGCTTTGAGCCTTGAATCCTCATTGTCAAAGATATGCAAGCCCATTATTGAAGTGAAAAGCCTTATTACCCAGTTTGCAAGATATGAAACTAGAAAACTTCGGCTAAAAAAACTTAACCGAGTCTCCTATTTATTTTGTGATTTTTTTTCATTCTGAAATTGGCAACTGTTTCTATTTCTGTAAATCAGTACATGGTTGTATTGATATTTACACAAGGAACTCTGAGAGAACTGCCCTATCCCTATAATGAGTGTAAAACATCAATGATAGAGACCGTTTCATTAGAGTAAACCTGATTACACCAAAAATGCGAAGTCAGATTACAATTACCCTCACTCTCAGAAACTCTAAGCTAGCATTTGACCATAGATTTCCAAATATTTTTGGGAAATATTATTTGGGTGAAATTTCACTACGTATTTGGCCTATATTTCACCTTTTTAAGAAATATAATTTCTACTCATAAGTTTTAAAAACTACCAAAACTAACCATATGTTTGTATAACATAGCACATGACTTTGCTACCCTAAATGGATTGTTCATCATTTTCATCAACAACCACATCATCACTTTTATATTTACGGTATATTCCATCACTACTTTGATGTTCACGTAAAAGAATTATGTAAAACAACGAAAACAACTACTATAAAGGGTATTCTTGTAAAAGATAAAAGTCTGGTGTAGAATATGAATTATTAAAAGTTCCCAAATAATGAAACTTGACCCAAATACTAATTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGGTAAATTTTATGGACAAACACTATTTGCCAAATTTTCCCTCCAAATTTTATTTGGGAAGCCTATGGACAAACGGGCCCTAAGATTCCTCTCTGTCCATATAGTCCACCAAGTGTGCTTGGATTGTTTTTGTTGTAAGAAGTGGGACGAACCTTCATTTTTCTACAGATCTACGTGCAACAAAAATAACAACTACTTCTCAACTCCAAGCTAGTTGTGGTTGGCTACAGAAATCCTCTCTATCCATTTCACTCAATTGGGCCTTTCACTCCGATGATCAATAATTTGTTGTACTTTAATAATTATTGGTTTTCAGACTTTATTGGGATACAAATATCCAAACAGACTAATTCTTAGCATTTATTGAACTTAAGCTTAAATCACAACTAATTGGTATCGCCTATATGAATCTTATGTTCCCATTGTGTTAACTTCTTGAAAAGTTCACATGGAATTTAATAGATTATAGGTCTTTTTGGACAACTTCCTTTCCTTGTGATTTCAAGATTTATGTATCAACCTTTTATTTTATAAGCTGCTGGTCAAGTCTTAGCCATGAATAAGCAGGAATATGGTCAATGCTTTCTGATCATATGACATTGTCCTATCATATTGAGTGTCCTGCACGGTTTTGCACTAAGTTTTAGTAGTTCGATTTCTTTTTGGAGTAACATTTGTAAGAACAGTAGTTGTGGAAAATGGAAATTGAGTATGATTCTTATTACTGTTGTGTATCTAGGCAATGCGGCTGGGCTGCTCCTTTCAAAACAGTTATTGCCGGCTAAAAATGTGTGGAGTCGAAACAACACCTTTTTGTGCTTTATGATTGTTGGTCAGAGATGAAATAACAATTATTAGTAGATTTATCTGTTCTGGTAATTCGACAAATAAAGTAATTGTTCCCTGCATTCACATCTCTTACCCTTGAAATACTTGCGTTCAGGATGAAAGTTTCTTCAGGATAAACACGAACACTATTGTATGGATATGAGTTACACATCGAACGCCCTCCTGGTTTATCTTAGTTGACCTTGTTCTAGATCATAGATATAAGATGTTTGATTCCAGCACTTAGCTAAACTACATTTTCAAGGTGATTCCTATTGCATTTTCATCTTCAAGAGCCTACAAATATATTGAGGACTGACAAGATGTTCTTGAACTTATGATATGTACATGCATTGCGAGGCCTATACTATGGTTATACTGATTGCAATTCTTGTAGCCATGAGTTTTAATTTTGATTAGCCACTTATTTTGTAATTTGACCTGAATAGCATGAATAAATTAGATGCAAATTTTCTTTGATATCAAATCTTTTATCCTGGGTAGAGTTTATTCTGACTTGGCATTGTGGGACTGACATGCTGCCCGTCTTAATGCTCCATTTTATTCCTGATAACCACAGATCAGTATCTGGGACGAGAGAAAAGTCTTTGGTTCTCGAGGGCAGATCCTGAAGGAAGAGTTTGCTGGAAAGCATGTTGGGAATGGAAAGCATAGTGGAGGCAAAGTGGTAGATCTCGCTTTTCATCCTGGTCTTTTGTTCCTGATTTTTTTTAGCTGTTCATTCTATTTTCTATATATTTGAAGATGATAGTACCTTCTCATTGAACTCTTTGGTATGCAGAGAAACTCAGCTGG</genome_strand>
        <mrna_strand>TTGTTTCTTACAATTCCCTTCGCCGCTACTCACTTCTGCTGCATTCTGGTTTGTCTTTCTTCTTCCTTTTTTTGCCCCCACCTTATTCTGATTCTAGGGTTATATATATTTTTTTAATTCTTGATTTTTCTTGTTTGCGAGCTTCTTTAACCCTAGAAACCTAGGAATTGAACTCACATGCCAATTCTGATATGTTAGTTTTTTTTGTTTTTTTTTAAAAAAACTTTTCCTTCTGTTCTTTTTTTTTTGTTTAGACTTTAGAGAGAAACTTATAAGTAAACATAAGTAATCCAATGTTCAAAGGCTAAACATCCAATCTTTTCTTAACTGGGGCAGCAAATAGACCCTATCTGTTTTTTCAAAATTCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTCTTTTCTCATAAAGGTCTGCTTGCGGCTTACTAGTTGATGAATATTGCTTCCGAAACAATGGGGAGCACATTCAATACGCAAATTTTGGTGGATAAGCTGGAAATGCTTAATAGTTCACAGCAAAGCATTGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCACATTGGTGTATTTTTCACATGACCAAAGCAAAACAAGTTGTGGAAACCTGGGCCCAGCAATTCCATTGCTCACCACGTGAACAGAGATTGTCATTTCTTTACCTTGCAAATGACATCCTTCAGAATAGTCGGAGAAAGGGTGCAGAATTTGTTGCTGAATTTTGGAAGGTTCTTCCAGATGCTCTTCGTGATGTTATTGAAAATGGAAATGAGTTTGGAAGAAACGCTGCTTTGCGGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTATCTGGGACGAGAGAAAAGTCTTTGGTTCTCGAGGGCAGATCCTGAAGGAAGAGTTTGCTGGAAAGCATGTTGGGAATGGAAAGCATAGTGGAGGCAAAGTG..................................................................................................................AGAAACTCAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13905" PGL_stop="16108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13905" e_stop="14126"/>
            <exon e_start="14244" e_stop="14359"/>
            <exon e_start="15115" e_stop="15168"/>
            <exon e_start="15276" e_stop="15300"/>
            <exon e_start="15478" e_stop="15600"/>
            <exon e_start="15998" e_stop="16108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.901" e_score="0.950"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.983"/>
          <exon-intron don_prob="0.997" acc_prob="0.776" e_score="0.963"/>
          <exon-intron don_prob="0.927" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.955" e_score="0.984"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="13905" e_stop="14126" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.901">
            <gDNA_intron_boundary i_start="14127" i_stop="14243" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="14244" e_stop="14359" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14360" i_stop="15114" i_length="755"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="15115" e_stop="15168" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.776">
            <gDNA_intron_boundary i_start="15169" i_stop="15275" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15276" e_stop="15300" e_length="25"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.917">
            <gDNA_intron_boundary i_start="15301" i_stop="15477" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="15478" e_stop="15600" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.955">
            <gDNA_intron_boundary i_start="15601" i_stop="15997" i_length="397"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="15998" e_stop="16108" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13905" stop="14126"/>
              <exon start="14244" stop="14359"/>
              <exon start="15115" stop="15168"/>
              <exon start="15276" stop="15300"/>
              <exon start="15478" stop="15600"/>
              <exon start="15998" stop="16108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTGTAGGTGTGGAAGAGATGTCATTGGAAGCTAAAGCATTGGGACACTCTGGAATTGCCGGAGCAGTGCCTCTCTCATTCCGTCGCTCTTTTTCTTCATTCCCCACTCGTTTGTCGTTCCACACTGCCGTTCCTCCCCAAACCCGCCGATTCCAATCCTTGGCGGTTATTAAGAGAAGTCCTAAACGCCTCAAATACTCGGCTCCTCGCTTAACTAAG : GAAGATGGATTGCTCTATGTTCAAGTTGATCAATTTGGCTCGGATTCTTGGAAGTTGGATCCAGTTGTTGAACTTCTTAAAGGAGGAGCTGTTGGAGTCATTCCCACTGACACTCT : GTATGCAATAGTTTGTGATCTGAGCAGTCATTCAGCCATTGAACGTCTTCGTAG : AATAAAAGAGATAGAACCTTCAAAG : CCCCTAAGTATCATTTGTCGATCTTTCCGCGACATAGATACATATACAACTGGATTTCCCCGTGGTAATGCCCAAGGTCTTACAGACATTTTTCGAGCAGTCAAGCACTGTCTACCTGGTCCT : TACACTTTCATCTTAACTGCTAGCAAACAGCTACCAAAACAATGCACGAGATACGGGTCTGCAACTTCCAAATATGCTTCAAGGAAAAATGTTGGTGTTCGTATACCTGAT</gDNA_template>
            <first_frame> M  I  V  G  V  E  E  M  S  L  E  A  K  A  L  G  H  S  G  I  A  G  A  V  P  L  S  F  R  R  S  F  S  S  F  P  T  R  L  S  F  H  T  A  V  P  P  Q  T  R  R  F  Q  S  L  A  V  I  K  R  S  P  K  R  L  K  Y  S  A  P  R  L  T  K  :  E  D  G  L  L  Y  V  Q  V  D  Q  F  G  S  D  S  W  K  L  D  P  V  V  E  L  L  K  G  G  A  V  G  V  I  P  T  D  T  L :   Y  A  I  V  C  D  L  S  S  H  S  A  I  E  R  L  R  R :   I  K  E  I  E  P  S  K  :  P  L  S  I  I  C  R  S  F  R  D  I  D  T  Y  T  T  G  F  P  R  G  N  A  Q  G  L  T  D  I  F  R  A  V  K  H  C  L  P  G  P  :  Y  T  F  I  L  T  A  S  K  Q  L  P  K  Q  C  T  R  Y  G  S  A  T  S  K  Y  A  S  R  K  N  V  G  V  R  I  P  D </first_frame>
            <second_frame>  *  L  *  V  W  K  R  C  H  W  K  L  K  H  W  D  T  L  E  L  P  E  Q  C  L  S  H  S  V  A  L  F  L  H  S  P  L  V  C  R  S  T  L  P  F  L  P  K  P  A  D  S  N  P  W  R  L  L  R  E  V  L  N  A  S  N  T  R  L  L  A  *  L  R :   K  M  D  C  S  M  F  K  L  I  N  L  A  R  I  L  G  S  W  I  Q  L  L  N  F  L  K  E  E  L  L  E  S  F  P  L  T  L   : C  M  Q  *  F  V  I  *  A  V  I  Q  P  L  N  V  F  V   : E  *  K  R  *  N  L  Q  S :   P  *  V  S  F  V  D  L  S  A  T  *  I  H  I  Q  L  D  F  P  V  V  M  P  K  V  L  Q  T  F  F  E  Q  S  S  T  V  Y  L  V  L :   T  L  S  S  *  L  L  A  N  S  Y  Q  N  N  A  R  D  T  G  L  Q  L  P  N  M  L  Q  G  K  M  L  V  F  V  Y  L   </second_frame>
            <third_frame>   D  C  R  C  G  R  D  V  I  G  S  *  S  I  G  T  L  W  N  C  R  S  S  A  S  L  I  P  S  L  F  F  F  I  P  H  S  F  V  V  P  H  C  R  S  S  P  N  P  P  I  P  I  L  G  G  Y  *  E  K  S  *  T  P  Q  I  L  G  S  S  L  N  *   : G  R  W  I  A  L  C  S  S  *  S  I  W  L  G  F  L  E  V  G  S  S  C  *  T  S  *  R  R  S  C  W  S  H  S  H  *  H  S  :  V  C  N  S  L  *  S  E  Q  S  F  S  H  *  T  S  S  *  :  N  K  R  D  R  T  F  K   : A  P  K  Y  H  L  S  I  F  P  R  H  R  Y  I  Y  N  W  I  S  P  W  *  C  P  R  S  Y  R  H  F  S  S  S  Q  A  L  S  T  W  S   : L  H  F  H  L  N  C  *  Q  T  A  T  K  T  M  H  E  I  R  V  C  N  F  Q  I  C  F  K  E  K  C  W  C  S  Y  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13905" stop="14126"/>
                    <exon start="14244" stop="14359"/>
                    <exon start="15115" stop="15168"/>
                    <exon start="15276" stop="15300"/>
                    <exon start="15478" stop="15600"/>
                    <exon start="15998" stop="16108"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIVGVEEMSLEAKALGHSGIAGAVPLSFRRSFSSFPTRLSFHTAVPPQTRRFQSLAVIKRSPKRLKYSAPRLTKEDGLLYVQVDQFGSDSWKLDPVVELLKGGAVGVIPTDTLYAIVCDLSSHSAIERLRRIKEIEPSKPLSIICRSFRDIDTYTTGFPRGNAQGLTDIFRAVKHCLPGPYTFILTASKQLPKQCTRYGSATSKYASRKNVGVRIPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18907" PGL_stop="19413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18907" e_stop="19413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="18907" e_stop="19413" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18907" stop="19413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGAATTTCTTATCCAAAACAAAATATGCCTCTTATCCCAGAAGAGCCTTTGCTCGCCTCTAACCCAGATCGATTCTGTATGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGCGGAGCGTT</gDNA_template>
            <first_frame> L  E  F  L  I  Q  N  K  I  C  L  L  S  Q  K  S  L  C  S  P  L  T  Q  I  D  S  V  C  S  Q  F  S  I  H  R  F  G  K  C  T  R  K  P  W  H  L  S  G  R  Q  K  K  S  I  S  P  P  I  L  V  T  G  K  T  *  H  P  V  K  G  I  S  S  L  M  F  L  P  F  L  P  P  Q  T  A  S  F  *  R  T  S  L  E  G  S  *  K  M  S  R  L  P  R  L  V  L  S  M  G  S  K  S  P  L  R  I  S  I  P  R  C  T  V  C  C  W  S  R  T  S  R  I  L  T  K  R  A  N  C  S  V  Q  L  R  Q  S  L  V  L  K  R  R  R  N  G  P  F  V  G  S  M  G  P  K  L  S  R  S  V </first_frame>
            <second_frame>  *  N  F  L  S  K  T  K  Y  A  S  Y  P  R  R  A  F  A  R  L  *  P  R  S  I  L  Y  V  P  N  S  V  S  T  D  L  G  N  V  Q  E  S  H  G  I  F  L  D  G  R  R  S  R  S  L  H  R  Y  S  S  L  G  K  P  N  I  R  *  K  A  F  H  H  S  C  S  C  L  F  C  R  L  R  R  H  R  F  R  E  P  R  W  K  V  H  E  R  C  P  G  C  R  G  S  C  F  L  W  V  P  N  R  H  *  E  Y  P  F  R  D  V  Q  F  A  V  G  V  V  H  Q  G  F  *  R  K  E  Q  I  V  P  C  N  *  D  N  P  L  C  *  K  E  G  E  M  G  P  S  L  D  R  W  V  R  N  F  R  G  A   </second_frame>
            <third_frame>   R  I  S  Y  P  K  Q  N  M  P  L  I  P  E  E  P  L  L  A  S  N  P  D  R  F  C  M  F  P  I  Q  Y  P  Q  I  W  E  M  Y  K  K  A  M  A  S  F  W  T  A  E  E  V  D  L  S  T  D  T  R  H  W  E  N  L  T  S  G  E  R  H  F  I  T  H  V  L  A  F  F  A  A  S  D  G  I  V  L  E  N  L  A  G  R  F  M  K  D  V  Q  V  A  E  A  R  A  F  Y  G  F  Q  I  A  I  E  N  I  H  S  E  M  Y  S  L  L  L  E  S  Y  I  K  D  S  D  E  K  S  K  L  F  R  A  I  E  T  I  P  C  V  E  K  K  A  K  W  A  L  R  W  I  D  G  S  E  T  F  A  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18909" stop="19412"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RISYPKQNMPLIPEEPLLASNPDRFCMFPIQYPQIWEMYKKAMASFWTAEEVDLSTDTRHWENLTSGERHFITHVLAFFAASDGIVLENLAGRFMKDVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSKLFRAIETIPCVEKKAKWALRWIDGSETFAER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24021" PGL_stop="20951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24021" e_stop="23905"/>
            <exon e_start="23820" e_stop="23753"/>
            <exon e_start="22518" e_stop="22320"/>
            <exon e_start="21187" e_stop="20951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24021" e_stop="23905" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23904" i_stop="23821" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23820" e_stop="23753" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="23752" i_stop="22519" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22518" e_stop="22320" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="22319" i_stop="21188" i_length="1132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21187" e_stop="20951" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24021" stop="23905"/>
              <exon start="23820" stop="23753"/>
              <exon start="22518" stop="22320"/>
              <exon start="21187" stop="20951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATAGGCAAATCGAATTAGGGTTTCCGTTCTGGAGCCCAACTCGTCGACGTTTTGGTCCTGATGATCCCTTCTTCGCTTACGGTAACATTCAAAGAGAGCTTCTCGCTAAGCAG : GTTGCATTGGATTTGACTGAAGAAGAGAACCAGTTAGTTCAAAATAGTATCACAGATGACGAAATCAG : CAATCTCTTCTGTCCAATCATTGGTTGTGGTGCACAGATGAAAAATCTGGATGACTTTGAAGACCACTATGTTACACGACATACTGCATCTTGTTCTGTATGCTCTCGAGTTTACCCAACATCACGCCTGCTCAGCATACATGTGTCAGAGGCTCATGATTCCTTTTTTCAGGCAAAAGCTGCTCGAGGCTTTCCCATG : TATGAGTGCCTTGTGGAAGGCTGTGATATCAAGTTGAAAAGCTACAAAAGCAGGCAGCAACATCTTGTTGACAAGCATAAATTTCCAGCATCTTATGAGTTCTTCAGAAAAGCTCGTCCATCAAAAAAACAGAGGCTGAAGCCGCATCATAAACAAGCATCTAATAAGACTCAGGAGAAGTCAAGTGCAATGCAAGTTGAGGAAGAAACAATAGACAATCTCGTTTCAGCGGTATCG</gDNA_template>
            <first_frame> F  D  R  Q  I  E  L  G  F  P  F  W  S  P  T  R  R  R  F  G  P  D  D  P  F  F  A  Y  G  N  I  Q  R  E  L  L  A  K  Q  :  V  A  L  D  L  T  E  E  E  N  Q  L  V  Q  N  S  I  T  D  D  E  I  S :   N  L  F  C  P  I  I  G  C  G  A  Q  M  K  N  L  D  D  F  E  D  H  Y  V  T  R  H  T  A  S  C  S  V  C  S  R  V  Y  P  T  S  R  L  L  S  I  H  V  S  E  A  H  D  S  F  F  Q  A  K  A  A  R  G  F  P  M  :  Y  E  C  L  V  E  G  C  D  I  K  L  K  S  Y  K  S  R  Q  Q  H  L  V  D  K  H  K  F  P  A  S  Y  E  F  F  R  K  A  R  P  S  K  K  Q  R  L  K  P  H  H  K  Q  A  S  N  K  T  Q  E  K  S  S  A  M  Q  V  E  E  E  T  I  D  N  L  V  S  A  V  S </first_frame>
            <second_frame>  L  I  G  K  S  N  *  G  F  R  S  G  A  Q  L  V  D  V  L  V  L  M  I  P  S  S  L  T  V  T  F  K  E  S  F  S  L  S  R :   L  H  W  I  *  L  K  K  R  T  S  *  F  K  I  V  S  Q  M  T  K  S   : A  I  S  S  V  Q  S  L  V  V  V  H  R  *  K  I  W  M  T  L  K  T  T  M  L  H  D  I  L  H  L  V  L  Y  A  L  E  F  T  Q  H  H  A  C  S  A  Y  M  C  Q  R  L  M  I  P  F  F  R  Q  K  L  L  E  A  F  P  C :   M  S  A  L  W  K  A  V  I  S  S  *  K  A  T  K  A  G  S  N  I  L  L  T  S  I  N  F  Q  H  L  M  S  S  S  E  K  L  V  H  Q  K  N  R  G  *  S  R  I  I  N  K  H  L  I  R  L  R  R  S  Q  V  Q  C  K  L  R  K  K  Q  *  T  I  S  F  Q  R  Y   </second_frame>
            <third_frame>   *  *  A  N  R  I  R  V  S  V  L  E  P  N  S  S  T  F  W  S  *  *  S  L  L  R  L  R  *  H  S  K  R  A  S  R  *  A   : G  C  I  G  F  D  *  R  R  E  P  V  S  S  K  *  Y  H  R  *  R  N  Q  :  Q  S  L  L  S  N  H  W  L  W  C  T  D  E  K  S  G  *  L  *  R  P  L  C  Y  T  T  Y  C  I  L  F  C  M  L  S  S  L  P  N  I  T  P  A  Q  H  T  C  V  R  G  S  *  F  L  F  S  G  K  S  C  S  R  L  S  H   : V  *  V  P  C  G  R  L  *  Y  Q  V  E  K  L  Q  K  Q  A  A  T  S  C  *  Q  A  *  I  S  S  I  L  *  V  L  Q  K  S  S  S  I  K  K  T  E  A  E  A  A  S  *  T  S  I  *  *  D  S  G  E  V  K  C  N  A  S  *  G  R  N  N  R  Q  S  R  F  S  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24021" stop="23905"/>
                    <exon start="23820" stop="23753"/>
                    <exon start="22518" stop="22320"/>
                    <exon start="21187" stop="20951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDRQIELGFPFWSPTRRRFGPDDPFFAYGNIQRELLAKQVALDLTEEENQLVQNSITDDEISNLFCPIIGCGAQMKNLDDFEDHYVTRHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKAARGFPMYECLVEGCDIKLKSYKSRQQHLVDKHKFPASYEFFRKARPSKKQRLKPHHKQASNKTQEKSSAMQVEEETIDNLVSAVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="60253" PGL_stop="62775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60253" e_stop="60277"/>
            <exon e_start="61150" e_stop="61216"/>
            <exon e_start="61576" e_stop="61659"/>
            <exon e_start="62358" e_stop="62775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.870" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60253" e_stop="60277" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.870" acc_prob="0.969">
            <gDNA_intron_boundary i_start="60278" i_stop="61149" i_length="872"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61150" e_stop="61216" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61217" i_stop="61575" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61576" e_stop="61659" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61660" i_stop="62357" i_length="698"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="62358" e_stop="62775" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60253" stop="60277"/>
              <exon start="61150" stop="61216"/>
              <exon start="61576" stop="61659"/>
              <exon start="62358" stop="62775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATGTATCCTGGCTTACCTAGTCG : CCTTGAGAAAGAAATTTTGGACCGCTATCTTGATGTTGTTCTGAAGGGGAACAAAGATGGTTTGAAG : AAATTGCGCTTACGAATAGAAGATCCACCCAGAAGAAAGCATATGGTGTATCTCGGTGGTGCAGTTCTGGCCGGAATTATGAAG : GATGCCCCTGAGTTTTGGATCAATAGACAAGATTATTTAGAAGAGGGAGTTGCATGCCTAAGCAAGTGTGGTCAGGCATGATTTCTACATGTCCATGAATTGTTTAAGCTCTGGCTATCTTTTCAAAGAAAAGCTTGGAAATGTACAGATCAAGACGTGCTGGAAATGACTCTTTACCATTCAAATAGAAGTTCTTGTACTGTATTTTGCCAAAAAATTCTCAAAGAGACAGGACGTGTCATACTTGAATGTTTTTACTGCATCTGCTTTCCATGAGTTGTTTAAGGCTTGATTTTGAACTTGTACAGTCCGTATTGAAGTAAAACATTGCTAATTGGAACTGCTTTCCGTTCCTACTCTTCTGTGAAGTATTAAAATGTGTGCTGAAACATAAGCAGCTTATTCCGTAATCTGGTGC</gDNA_template>
            <first_frame> P  C  I  L  A  Y  L  V   : A  L  R  K  K  F  W  T  A  I  L  M  L  F  *  R  G  T  K  M  V  *  R :   N  C  A  Y  E  *  K  I  H  P  E  E  S  I  W  C  I  S  V  V  Q  F  W  P  E  L  *  R :   M  P  L  S  F  G  S  I  D  K  I  I  *  K  R  E  L  H  A  *  A  S  V  V  R  H  D  F  Y  M  S  M  N  C  L  S  S  G  Y  L  F  K  E  K  L  G  N  V  Q  I  K  T  C  W  K  *  L  F  T  I  Q  I  E  V  L  V  L  Y  F  A  K  K  F  S  K  R  Q  D  V  S  Y  L  N  V  F  T  A  S  A  F  H  E  L  F  K  A  *  F  *  T  C  T  V  R  I  E  V  K  H  C  *  L  E  L  L  S  V  P  T  L  L  *  S  I  K  M  C  A  E  T  *  A  A  Y  S  V  I  W  C </first_frame>
            <second_frame>  H  V  S  W  L  T  *  S  :  P  *  E  R  N  F  G  P  L  S  *  C  C  S  E  G  E  Q  R  W  F  E   : E  I  A  L  T  N  R  R  S  T  Q  K  K  A  Y  G  V  S  R  W  C  S  S  G  R  N  Y  E   : G  C  P  *  V  L  D  Q  *  T  R  L  F  R  R  G  S  C  M  P  K  Q  V  W  S  G  M  I  S  T  C  P  *  I  V  *  A  L  A  I  F  S  K  K  S  L  E  M  Y  R  S  R  R  A  G  N  D  S  L  P  F  K  *  K  F  L  Y  C  I  L  P  K  N  S  Q  R  D  R  T  C  H  T  *  M  F  L  L  H  L  L  S  M  S  C  L  R  L  D  F  E  L  V  Q  S  V  L  K  *  N  I  A  N  W  N  C  F  P  F  L  L  F  C  E  V  L  K  C  V  L  K  H  K  Q  L  I  P  *  S  G   </second_frame>
            <third_frame>   M  Y  P  G  L  P  S  R :   L  E  K  E  I  L  D  R  Y  L  D  V  V  L  K  G  N  K  D  G  L  K  :  K  L  R  L  R  I  E  D  P  P  R  R  K  H  M  V  Y  L  G  G  A  V  L  A  G  I  M  K  :  D  A  P  E  F  W  I  N  R  Q  D  Y  L  E  E  G  V  A  C  L  S  K  C  G  Q  A  *  F  L  H  V  H  E  L  F  K  L  W  L  S  F  Q  R  K  A  W  K  C  T  D  Q  D  V  L  E  M  T  L  Y  H  S  N  R  S  S  C  T  V  F  C  Q  K  I  L  K  E  T  G  R  V  I  L  E  C  F  Y  C  I  C  F  P  *  V  V  *  G  L  I  L  N  L  Y  S  P  Y  *  S  K  T  L  L  I  G  T  A  F  R  S  Y  S  S  V  K  Y  *  N  V  C  *  N  I  S  S  L  F  R  N  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60255" stop="60277"/>
                    <exon start="61150" stop="61216"/>
                    <exon start="61576" stop="61659"/>
                    <exon start="62358" stop="62438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYPGLPSRLEKEILDRYLDVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINRQDYLEEGVACLSKCGQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62439" stop="62633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHVHELFKLWLSFQRKAWKCTDQDVLEMTLYHSNRSSCTVFCQKILKETGRVILECFYCICFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="61355" PGL_stop="60880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61355" e_stop="60880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61355" e_stop="60880" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61355" stop="60880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M100-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61355" stop="60892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M100-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACCAGTGAGATTGAGGTATTTTATTGTGGTTTGTGGGTAAGACTATTTGAATAAATGCAACTTAGTTGCATAAACCTTATTCATAAACCAAAAACCTCAAGAAATTGTGAAAAGAACAAATAAGAGTCACACAGTACCTTCAAACCATCTTTGTTCCCCTTCAGAACAACATCAAGATAGCGGTCCAAAATTTCTTTCTCAAGGCTGTCAATGTTTAAAAAGAAGGGAAAATAGCTGTTATTAAAGGAAACAAGAATATGATGAGTGTGGTCATGAGGTGGGTAAGAAAGAGTTTCGTTCCTTATATTCCCACAGTAAACCAAAAGAAATGTTAACTGCAAAAGTAAAGTTCAAAGGAATAAATCACAAAGAGATGAAAGTCCTTCTTGATGACAGCTCACGGATATTCTTAACAGAAATTCTTCATGCATTAAAGTGTATACCTAAATTTCCTAATATAGCACATTTCTAAAC</gDNA_template>
            <first_frame> L  P  V  R  L  R  Y  F  I  V  V  C  G  *  D  Y  L  N  K  C  N  L  V  A  *  T  L  F  I  N  Q  K  P  Q  E  I  V  K  R  T  N  K  S  H  T  V  P  S  N  H  L  C  S  P  S  E  Q  H  Q  D  S  G  P  K  F  L  S  Q  G  C  Q  C  L  K  R  R  E  N  S  C  Y  *  R  K  Q  E  Y  D  E  C  G  H  E  V  G  K  K  E  F  R  S  L  Y  S  H  S  K  P  K  E  M  L  T  A  K  V  K  F  K  G  I  N  H  K  E  M  K  V  L  L  D  D  S  S  R  I  F  L  T  E  I  L  H  A  L  K  C  I  P  K  F  P  N  I  A  H  F  *   </first_frame>
            <second_frame>  Y  Q  *  D  *  G  I  L  L  W  F  V  G  K  T  I  *  I  N  A  T  *  L  H  K  P  Y  S  *  T  K  N  L  K  K  L  *  K  E  Q  I  R  V  T  Q  Y  L  Q  T  I  F  V  P  L  Q  N  N  I  K  I  A  V  Q  N  F  F  L  K  A  V  N  V  *  K  E  G  K  I  A  V  I  K  G  N  K  N  M  M  S  V  V  M  R  W  V  R  K  S  F  V  P  Y  I  P  T  V  N  Q  K  K  C  *  L  Q  K  *  S  S  K  E  *  I  T  K  R  *  K  S  F  L  M  T  A  H  G  Y  S  *  Q  K  F  F  M  H  *  S  V  Y  L  N  F  L  I  *  H  I  S  K  </second_frame>
            <third_frame>   T  S  E  I  E  V  F  Y  C  G  L  W  V  R  L  F  E  *  M  Q  L  S  C  I  N  L  I  H  K  P  K  T  S  R  N  C  E  K  N  K  *  E  S  H  S  T  F  K  P  S  L  F  P  F  R  T  T  S  R  *  R  S  K  I  S  F  S  R  L  S  M  F  K  K  K  G  K  *  L  L  L  K  E  T  R  I  *  *  V  W  S  *  G  G  *  E  R  V  S  F  L  I  F  P  Q  *  T  K  R  N  V  N  C  K  S  K  V  Q  R  N  K  S  Q  R  D  E  S  P  S  *  *  Q  L  T  D  I  L  N  R  N  S  S  C  I  K  V  Y  T  *  I  S  *  Y  S  T  F  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61109" stop="60882"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQEYDECGHEVGKKEFRSLYSHSKPKEMLTAKVKFKGINHKEMKVLLDDSSRIFLTEILHALKCIPKFPNIAHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="89687" PGL_stop="84587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89687" e_stop="89315"/>
            <exon e_start="88493" e_stop="88354"/>
            <exon e_start="87727" e_stop="87480"/>
            <exon e_start="84822" e_stop="84715"/>
            <exon e_start="84600" e_stop="84587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.642" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89687" e_stop="89315" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.642">
            <gDNA_intron_boundary i_start="89314" i_stop="88494" i_length="821"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88493" e_stop="88354" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88353" i_stop="87728" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87727" e_stop="87480" e_length="248"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87479" i_stop="84823" i_length="2657"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84822" e_stop="84715" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84714" i_stop="84601" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84600" e_stop="84587" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89687" stop="89315"/>
              <exon start="88493" stop="88354"/>
              <exon start="87727" stop="87480"/>
              <exon start="84822" stop="84715"/>
              <exon start="84600" stop="84587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCTTACAATTCCCTTCGCCGCTACTCACTTCTGCTGCATTCTGGTTTGTCTTTCTTCTTCCTTTTTTTGCCCCCACCTTATTCTGATTCTAGGGTTATATATATTTTTTTAATTCTTGATTTTTCTTGTTTGCGAGCTTCTTTAACCCTAGAAACCTAGGAATTGAACTCACATGCCAATTCTGATATGTTAGTTTTTTTTGTTTTTTTTTAAAAAAACTTTTCCTTCTGTTCTTTTTTTTTTGTTTAGACTTTAGAGAGAAACTTATAAGTAAACATAAGTAATCCAATGTTCAAAGGCTAAACATCCAATCTTTTCTTAACTGGGGCAGCAAATAGACCCTATCTGTTTTTTCAAAATTCCAAAAG : AGTGTTCTTTTCTCATAAAGGTCTGCTTGCGGCTTACTAGTTGATGAATATTGCTTCCGAAACAATGGGGAGCACATTCAATACGCAAATTTTGGTGGATAAGCTGGAAATGCTTAATAGTTCACAGCAAAGCATTGAAA : CTTTATCACATTGGTGTATTTTTCACATGACCAAAGCAAAACAAGTTGTGGAAACCTGGGCCCAGCAATTCCATTGCTCACCACGTGAACAGAGATTGTCATTTCTTTACCTTGCAAATGACATCCTTCAGAATAGTCGGAGAAAGGGTGCAGAATTTGTTGCTGAATTTTGGAAGGTTCTTCCAGATGCTCTTCGTGATGTTATTGAAAATGGAAATGAGTTTGGAAGAAACGCTGCTTTGCGGCTG : ATCAGTATCTGGGACGAGAGAAAAGTCTTTGGTTCTCGAGGGCAGATCCTGAAGGAAGAGTTTGCTGGAAAGCATGTTGGGAATGGAAAGCATAGTGGAGGCAAAGTG : AGAAACTCAGCTGG</gDNA_template>
            <first_frame> L  F  L  T  I  P  F  A  A  T  H  F  C  C  I  L  V  C  L  S  S  S  F  F  C  P  H  L  I  L  I  L  G  L  Y  I  F  F  *  F  L  I  F  L  V  C  E  L  L  *  P  *  K  P  R  N  *  T  H  M  P  I  L  I  C  *  F  F  L  F  F  F  K  K  T  F  P  S  V  L  F  F  L  F  R  L  *  R  E  T  Y  K  *  T  *  V  I  Q  C  S  K  A  K  H  P  I  F  S  *  L  G  Q  Q  I  D  P  I  C  F  F  K  I  P  K   : E  C  S  F  L  I  K  V  C  L  R  L  T  S  *  *  I  L  L  P  K  Q  W  G  A  H  S  I  R  K  F  W  W  I  S  W  K  C  L  I  V  H  S  K  A  L  K  :  L  Y  H  I  G  V  F  F  T  *  P  K  Q  N  K  L  W  K  P  G  P  S  N  S  I  A  H  H  V  N  R  D  C  H  F  F  T  L  Q  M  T  S  F  R  I  V  G  E  R  V  Q  N  L  L  L  N  F  G  R  F  F  Q  M  L  F  V  M  L  L  K  M  E  M  S  L  E  E  T  L  L  C  G  * :   S  V  S  G  T  R  E  K  S  L  V  L  E  G  R  S  *  R  K  S  L  L  E  S  M  L  G  M  E  S  I  V  E  A  K  * :   E  T  Q  L  </first_frame>
            <second_frame>  C  F  L  Q  F  P  S  P  L  L  T  S  A  A  F  W  F  V  F  L  L  P  F  F  A  P  T  L  F  *  F  *  G  Y  I  Y  F  F  N  S  *  F  F  L  F  A  S  F  F  N  P  R  N  L  G  I  E  L  T  C  Q  F  *  Y  V  S  F  F  C  F  F  L  K  K  L  F  L  L  F  F  F  F  C  L  D  F  R  E  K  L  I  S  K  H  K  *  S  N  V  Q  R  L  N  I  Q  S  F  L  N  W  G  S  K  *  T  L  S  V  F  S  K  F  Q  K  :  S  V  L  F  S  *  R  S  A  C  G  L  L  V  D  E  Y  C  F  R  N  N  G  E  H  I  Q  Y  A  N  F  G  G  *  A  G  N  A  *  *  F  T  A  K  H  *  N :   F  I  T  L  V  Y  F  S  H  D  Q  S  K  T  S  C  G  N  L  G  P  A  I  P  L  L  T  T  *  T  E  I  V  I  S  L  P  C  K  *  H  P  S  E  *  S  E  K  G  C  R  I  C  C  *  I  L  E  G  S  S  R  C  S  S  *  C  Y  *  K  W  K  *  V  W  K  K  R  C  F  A  A   : D  Q  Y  L  G  R  E  K  S  L  W  F  S  R  A  D  P  E  G  R  V  C  W  K  A  C  W  E  W  K  A  *  W  R  Q  S   : E  K  L  S  W </second_frame>
            <third_frame>   V  S  Y  N  S  L  R  R  Y  S  L  L  L  H  S  G  L  S  F  F  F  L  F  L  P  P  P  Y  S  D  S  R  V  I  Y  I  F  L  I  L  D  F  S  C  L  R  A  S  L  T  L  E  T  *  E  L  N  S  H  A  N  S  D  M  L  V  F  F  V  F  F  *  K  N  F  S  F  C  S  F  F  F  V  *  T  L  E  R  N  L  *  V  N  I  S  N  P  M  F  K  G  *  T  S  N  L  F  L  T  G  A  A  N  R  P  Y  L  F  F  Q  N  S  K  R :   V  F  F  S  H  K  G  L  L  A  A  Y  *  L  M  N  I  A  S  E  T  M  G  S  T  F  N  T  Q  I  L  V  D  K  L  E  M  L  N  S  S  Q  Q  S  I  E   : T  L  S  H  W  C  I  F  H  M  T  K  A  K  Q  V  V  E  T  W  A  Q  Q  F  H  C  S  P  R  E  Q  R  L  S  F  L  Y  L  A  N  D  I  L  Q  N  S  R  R  K  G  A  E  F  V  A  E  F  W  K  V  L  P  D  A  L  R  D  V  I  E  N  G  N  E  F  G  R  N  A  A  L  R  L  :  I  S  I  W  D  E  R  K  V  F  G  S  R  G  Q  I  L  K  E  E  F  A  G  K  H  V  G  N  G  K  H  S  G  G  K  V  :  R  N  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0061K08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88453" stop="88354"/>
                    <exon start="87727" stop="87480"/>
                    <exon start="84822" stop="84715"/>
                    <exon start="84600" stop="84589"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMNIASETMGSTFNTQILVDKLEMLNSSQQSIETLSHWCIFHMTKAKQVVETWAQQFHCSPREQRLSFLYLANDILQNSRRKGAEFVAEFWKVLPDALRDVIENGNEFGRNAALRLISIWDERKVFGSRGQILKEEFAGKHVGNGKHSGGKVRNSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 14472 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2067 bytes was the average size of a spliced alignment
$ 11888 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1981 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-29 04:42:18
-->
